RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14777
         (158 letters)



>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 66

 Score = 97.4 bits (243), Expect = 3e-28
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 86  DPIQQLFLDKLSEYKSKS-TGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG     DM  FPNF
Sbjct: 2   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK---ADMNTFPNF 58

Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 59  TFEDPKFE 66


>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 68

 Score = 26.4 bits (58), Expect = 0.43
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 12/42 (28%)

Query: 112 TPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
            PEIE    A  ++  K+YGGD          F F  P+I P
Sbjct: 1   CPEIE----AQGNECLKEYGGD--------VGFGFCAPRIFP 30


>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3
           {Escherichia coli [TaxId: 562]}
          Length = 65

 Score = 25.4 bits (56), Expect = 1.1
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 105 GGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           GG +   T +  + +       A +    G   +T    FQF     +
Sbjct: 8   GGVI---TTKQWQAI-DKF---AGENTIYGSIRLTNRQTFQFHGILKK 48


>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
           {Escherichia coli [TaxId: 562]}
          Length = 261

 Score = 26.8 bits (58), Expect = 1.2
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 88  IQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFP 147
           IQ + +        +  G K+    P+++++L  D       +      D    P  +  
Sbjct: 41  IQHINVQHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVL 100

Query: 148 EPKIEPQV 155
           +P+IE ++
Sbjct: 101 QPRIEAEI 108


>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
          Length = 101

 Score = 24.7 bits (54), Expect = 3.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 27 VALKNASDPIQQLFLDKLSE 46
          +ALK ASD +++     +S+
Sbjct: 29 LALKGASDELKEKIFKNMSK 48



 Score = 24.7 bits (54), Expect = 3.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 79 VALKNASDPIQQLFLDKLSE 98
          +ALK ASD +++     +S+
Sbjct: 29 LALKGASDELKEKIFKNMSK 48


>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
           (Homo sapiens), liver isozyme [TaxId: 9606]}
          Length = 360

 Score = 25.0 bits (54), Expect = 4.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 113 PEIERELKADLSKTAKQYGGDGK 135
           P + +E K +LS+ A+    +GK
Sbjct: 5   PALTQEQKKELSEIAQSIVANGK 27


>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2
           [TaxId: 9913]}
          Length = 150

 Score = 24.0 bits (51), Expect = 7.8
 Identities = 6/68 (8%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 76  TSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGK 135
            +   +  + + +     +   E  +K T  + +        E      +   + G    
Sbjct: 80  NTLEVIHVSENMLVTYVENYDGERITKMT--EGLAKGTSFTPEELEKYQQLNSERGVP-N 136

Query: 136 EDMTKFPN 143
           E++     
Sbjct: 137 ENIENLIK 144


>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
           {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 153

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 127 AKQYGGDGKEDMTKFPNFQFPEPKIE 152
            K+YG DG  D+T   N+Q     + 
Sbjct: 108 IKKYGKDGCADVTTRQNWQIRGVVLP 133


>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
           {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
           9986]}
          Length = 363

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 113 PEIERELKADLSKTAKQYGGDGK 135
           P +  E K +LS  A +    GK
Sbjct: 5   PALTPEQKKELSDIAHRIVAPGK 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,605
Number of extensions: 20628
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 14
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)