BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14778
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34
PE=1 SV=3
Length = 3582
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 96/131 (73%), Gaps = 17/131 (12%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E LM + ++E K +VG
Sbjct: 2126 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFK-------DVGDRSK 2178
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
+ E+YEY+LIGVTVHTGTADGGHYYSFIRD +KW LFNDAEVK FDS+QL
Sbjct: 2179 D--TESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2236
Query: 113 AAECFGGEMTV 123
A+ECFGGEMT
Sbjct: 2237 ASECFGGEMTT 2247
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 123 VLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLM 167
V N L LLS A Y+DA +++LV Y + + Y +++ EKLM
Sbjct: 2764 VYNVLLGLLSRAKLYVDAAVHGTTKLVPYLSFMTYCLISKTEKLM 2808
>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34
PE=1 SV=2
Length = 3546
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 96/131 (73%), Gaps = 17/131 (12%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E LM + ++E K EV
Sbjct: 2089 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSERKEGFK-------EVSDHSK 2141
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
+ +E+YEY+LIGVTVHTGTADGGHYYSFIRD +KW LFNDAEVK FDS+QL
Sbjct: 2142 D--SESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2199
Query: 113 AAECFGGEMTV 123
A+ECFGGEMT
Sbjct: 2200 ASECFGGEMTT 2210
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 123 VLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLM 167
V N L LLS A Y+DA +++LV YF+ + Y +++ EKLM
Sbjct: 2727 VYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLM 2771
>sp|B1AY13|UBP24_MOUSE Ubiquitin carboxyl-terminal hydrolase 24 OS=Mus musculus GN=Usp24
PE=1 SV=1
Length = 2617
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MR+ F+ + K + FP L+M Y + Q E ++ + GG
Sbjct: 1883 MRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVAGMARQDSSSEVGENGRNMDQGGGGSPR 1942
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRDRD-----KWLLFNDAEVKHFD--SSQLA 113
+ YEL+GV VH+G A GHYYSFI+DR KW FND ++ FD L
Sbjct: 1943 KKVALTENYELVGVIVHSGQAHAGHYYSFIKDRRGCGKGKWYKFNDTVIEEFDLNDETLE 2002
Query: 114 AECFGGE 120
ECFGGE
Sbjct: 2003 YECFGGE 2009
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24
PE=1 SV=3
Length = 2620
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MR+ F+ + K + FP L+M Y + Q E ++ + GG
Sbjct: 1886 MRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVSGMARQDSSSEVGENGRSVDQGGGGSPR 1945
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRDRD-----KWLLFNDAEVKHFD--SSQLA 113
+ YEL+GV VH+G A GHYYSFI+DR KW FND ++ FD L
Sbjct: 1946 KKVALTENYELVGVIVHSGQAHAGHYYSFIKDRRGCGKGKWYKFNDTVIEEFDLNDETLE 2005
Query: 114 AECFGGE 120
ECFGGE
Sbjct: 2006 YECFGGE 2012
>sp|P55824|FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF OS=Drosophila
melanogaster GN=faf PE=1 SV=2
Length = 2778
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 26/131 (19%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R+ ++ + K N +F FP LDM Y L A+ EGEV E G+
Sbjct: 1914 RFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGL-------------AKLEGEVV-EVGD 1959
Query: 62 DFNENYE---YELIGVTVHTGTADGGHYYSFIRDRD------KWLLFNDAEV---KHFDS 109
+ N E YEL G+ VH+G A GGHY+S+I ++ +W F+D EV K +
Sbjct: 1960 NCQTNVETTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHED 2019
Query: 110 SQLAAECFGGE 120
++ AECFGGE
Sbjct: 2020 EEMKAECFGGE 2030
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
GN=USP9Y PE=1 SV=2
Length = 2555
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEK---HLMPQHYQEEKLKSEARGEGEVGGE 58
R+ ++ K N +F FP LDM Y +L + E E + + +
Sbjct: 1801 RFDYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNVNSENELIEQKEQSDNETA 1860
Query: 59 GGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-------DKWLLFNDAEV---KHFD 108
GG +Y L+GV VH+G A GGHYYS+I R D W F+D +V K D
Sbjct: 1861 GGT------KYRLVGVLVHSGQASGGHYYSYIIQRNGKDDQTDHWYKFDDGDVTECKMDD 1914
Query: 109 SSQLAAECFGGE 120
++ +CFGGE
Sbjct: 1915 DEEMKNQCFGGE 1926
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens
GN=USP9X PE=1 SV=3
Length = 2570
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMP-----QHYQEEKLKSEARGEGEVG 56
R+ ++ K N +F FP LDM Y + + + + ++ + E E
Sbjct: 1799 RFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQSEQSESETA 1858
Query: 57 GEGGEDFNENYEYELIGVTVHTGTADGGHYYSFI-------RDRDKWLLFNDAEV---KH 106
G + +Y L+GV VH+G A GGHYYS+I +R++W F+D +V K
Sbjct: 1859 G--------STKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGERNRWYKFDDGDVTECKM 1910
Query: 107 FDSSQLAAECFGGE 120
D ++ +CFGGE
Sbjct: 1911 DDDEEMKNQCFGGE 1924
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus
GN=Usp9x PE=1 SV=2
Length = 2559
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMP-----QHYQEEKLKSEARGEGEVG 56
R+ ++ K N +F FP LDM Y + + + + ++ + E E
Sbjct: 1799 RFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQNEQSESEKA 1858
Query: 57 GEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-------DKWLLFNDAEV---KH 106
G + +Y L+GV VH+G A GGHYYS+I R ++W F+D +V K
Sbjct: 1859 G--------STKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKM 1910
Query: 107 FDSSQLAAECFGGE 120
D ++ +CFGGE
Sbjct: 1911 DDDEEMKNQCFGGE 1924
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 3 YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
Y FN M+K VN + FP +D+S +V+K ++ ++ L SE + +
Sbjct: 402 YDFNYDQMVK--VNDKYEFPETIDLSPFVDKDVL-----KKTLDSENKDKNP-------- 446
Query: 63 FNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFG 118
Y Y L GV VH+G GHYY+ I+ D+W F+D V Q+ E FG
Sbjct: 447 ----YVYNLHGVLVHSGDISTGHYYTLIKPGVEDQWYRFDDERVWRVTKKQVFQENFG 500
>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47
PE=1 SV=2
Length = 1376
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
R+ F+ TM + K+N SFP LDMS +++ E S A EG +
Sbjct: 392 RFDFDYTTMHRIKLNDRMSFPEELDMSTFIDIEDEKSPQTESCTDSGAENEGSCHSDQMS 451
Query: 61 EDFNENYE---------------------------YELIGVTVHTGTADGGHYYSFIR-- 91
DF+ + YEL V VH+G+A GGHYY+ I+
Sbjct: 452 NDFSTDDAVDEGICLESSSGSEKISKPGLEKNSLMYELFSVMVHSGSAAGGHYYACIKSF 511
Query: 92 DRDKWLLFNDAEVKHF 107
D+W FND V
Sbjct: 512 SDDQWYSFNDQHVSRI 527
>sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27
PE=2 SV=2
Length = 438
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 12 KEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYEL 71
+ K+ T+ SFP+ LDM+ ++ E R G++ NEN +Y L
Sbjct: 320 RRKITTYISFPLELDMTPFMAS------------SKETRVNGQLQLPTNSANNEN-KYSL 366
Query: 72 IGVTVHTGTADGGHYYSFIR-DRDKWLLFNDAEV 104
V H GT + GHY SFIR RD+W +DA +
Sbjct: 367 FAVVNHQGTLESGHYTSFIRHHRDQWFKCDDAVI 400
>sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22
PE=2 SV=1
Length = 514
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM+ ++ E+R G+ + + N
Sbjct: 401 FEHSAKLRRKITTYVSFPLELDMTPFMAS------------SKESRMNGQYQ-QPTDSLN 447
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+ +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 448 NDNKYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAII 488
>sp|Q6GNI6|UB22A_XENLA Ubiquitin carboxyl-terminal hydrolase 22-A OS=Xenopus laevis
GN=usp22-a PE=2 SV=1
Length = 523
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM+ ++ E+R G+ N
Sbjct: 410 FEHSAKLRRKITTYVSFPLELDMTPFMAS------------SKESRMNGQYQQPSDSLHN 457
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+N +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 458 DN-KYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAII 497
>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47
PE=3 SV=1
Length = 1375
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
R+ F+ TM + K+N +FP LDMS +++ E S A EG +
Sbjct: 391 RFDFDYTTMHRIKLNDRMTFPEELDMSIFIDVEDEKSPQTESCTDSGAENEGSCHSDQMS 450
Query: 61 EDFNEN---------------------------YEYELIGVTVHTGTADGGHYYSFIR-- 91
DF+ + YEL V VH+G+A GGHYY+ I+
Sbjct: 451 NDFSNDDGVDEGICLESNSAAERIAKVGSEKNSLLYELFSVMVHSGSAAGGHYYACIKSF 510
Query: 92 DRDKWLLFNDAEV 104
D+W FND V
Sbjct: 511 SDDQWYSFNDQHV 523
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22
PE=1 SV=2
Length = 525
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM+ ++ E+R G+ + + N
Sbjct: 412 FEHSAKLRRKITTYVSFPLELDMTPFMAS------------SKESRMNGQYQ-QPTDSLN 458
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+ +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 459 NDNKYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAII 499
>sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22
PE=2 SV=2
Length = 525
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM+ ++ E+R G+ + + N
Sbjct: 412 FEHSAKLRRKITTYVSFPLELDMTPFMAS------------SKESRMNGQYQ-QPLDSLN 458
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+ +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 459 NDNKYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAII 499
>sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X
PE=2 SV=3
Length = 438
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F + K+ T+ SFP+ LDM+ ++ E+R G++ N
Sbjct: 313 FEHSAKQRRKITTYISFPLELDMTPFMAS------------SKESRMNGQLQLPTNSGNN 360
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIR-DRDKWLLFNDAEV 104
EN +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 361 EN-KYSLFAVVNHQGTLESGHYTSFIRHHKDQWFKCDDAVI 400
>sp|Q5U252|UBP47_XENLA Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis GN=usp47
PE=2 SV=1
Length = 1350
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
R+ F+ +M + K+N +FP LDMS +++ + S A EG +
Sbjct: 377 RFDFDYTSMHRIKLNDRMTFPDELDMSPFIDMEDEKSPQTDSCTDSGAENEGSCHSDQMS 436
Query: 61 EDF--------------NENYE------------YELIGVTVHTGTADGGHYYSFIRD-- 92
DF N N E YEL V VH+G+A GGHYY+ I+
Sbjct: 437 NDFSTDDAVDEGICLETNSNIEKLNKSVAEKNSLYELFSVMVHSGSAAGGHYYACIKSFA 496
Query: 93 RDKWLLFNDAEVKHFDSSQLAAECFGG 119
+W FND V + + +GG
Sbjct: 497 DGQWYSFNDQHVSRITQEDI-KKTYGG 522
>sp|Q6DCJ1|UB22B_XENLA Ubiquitin carboxyl-terminal hydrolase 22-B OS=Xenopus laevis
GN=usp22-b PE=2 SV=2
Length = 523
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM ++ E+R G+ N
Sbjct: 410 FEHSAKLRRKITTYVSFPLELDMMPFMAS------------SKESRMNGQYQQPSDSLHN 457
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+N +Y L V H GT + GHY SFIR +D+W +DA +
Sbjct: 458 DN-KYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAII 497
>sp|A1A5G2|UBP47_XENTR Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis
GN=usp47 PE=2 SV=1
Length = 1354
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
R+ F+ +M + K+N +FP LDMS +++ + S A EG +
Sbjct: 378 RFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVEDEKSPQTDSCTDSGAENEGSCHSDQMS 437
Query: 61 EDF--------------NENYE------------YELIGVTVHTGTADGGHYYSFIRD-- 92
DF N N E YEL V VH+G+A GGHYY+ I+
Sbjct: 438 NDFSTDDAVDEGICLETNSNIEKLNKSVSEKNSLYELFSVMVHSGSAAGGHYYACIKSFA 497
Query: 93 RDKWLLFNDAEVKHFDSSQLAAECFGG 119
+W FND V + + +GG
Sbjct: 498 DGQWYSFNDQHVSRITQEDI-KKTYGG 523
>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47
PE=1 SV=3
Length = 1375
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
R+ F+ TM + K+N +FP LDMS +++ E S A EG +
Sbjct: 392 RFDFDYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMS 451
Query: 61 EDF--------------NENYE-------------YELIGVTVHTGTADGGHYYSFIR-- 91
DF N E YEL V VH+G+A GGHYY+ I+
Sbjct: 452 NDFSNDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSF 511
Query: 92 DRDKWLLFNDAEVKHF 107
++W FND V
Sbjct: 512 SDEQWYSFNDQHVSRI 527
>sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22
PE=2 SV=1
Length = 506
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F L+ K+ T+ SFP+ LDM+ ++ E+R G+ + + N
Sbjct: 393 FEHSAKLRRKITTYVSFPLELDMTPFMAS------------SKESRMNGQYQ-QPVDSLN 439
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRD-RDKWLLFNDAEV 104
+ +Y L V H GT + GHY +FIR +D+W +DA +
Sbjct: 440 NDNKYSLFAVVNHQGTLESGHYTTFIRQHKDQWFKCDDAII 480
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 26/120 (21%)
Query: 3 YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
Y F TM+K +N + FP+ LD+ K+L P D
Sbjct: 397 YDFMRDTMVK--INDRYEFPLELDLDREDGKYLSP----------------------DAD 432
Query: 63 FNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGE 120
+ Y L V VH+G GGHYY+FIR D+W F+D V D + E +GGE
Sbjct: 433 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGE 492
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 26/120 (21%)
Query: 3 YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
Y F TM+K +N + FP++LD+ ++L P D
Sbjct: 396 YDFMRDTMVK--INDRYEFPLQLDLDREDGRYLSP----------------------DAD 431
Query: 63 FNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGE 120
+ Y L V VH+G GGHYY+FIR D+W F+D V D + E +GGE
Sbjct: 432 KSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGE 491
>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila
melanogaster GN=Ubp64E PE=1 SV=2
Length = 1556
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 28 SGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGTADGGHYY 87
SG V QH + + E + + + Y YEL + +H+G+A GGHYY
Sbjct: 663 SGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYY 722
Query: 88 SFIRDRD--KWLLFNDAEVKHFDSSQLAAECFGG 119
++I+D D +W FND V + FGG
Sbjct: 723 AYIKDFDNNEWFCFNDQNVTSITQEDI-QRSFGG 755
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51
PE=2 SV=1
Length = 711
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF- 63
F V + K+NT SFP+ LDM+ ++ +E ++K G+ D
Sbjct: 599 FEHVGKQRRKINTFISFPLELDMTPFLAS------TKESRMKE---------GQPPTDCV 643
Query: 64 -NENYEYELIGVTVHTGTADGGHYYSFIR-DRDKWLLFNDA 102
NEN +Y L V H GT + GHY SFIR +D+W +DA
Sbjct: 644 PNEN-KYSLFAVINHHGTLESGHYTSFIRQQKDQWFSCDDA 683
>sp|Q5ZID5|UBP28_CHICK Ubiquitin carboxyl-terminal hydrolase 28 OS=Gallus gallus GN=USP28
PE=2 SV=1
Length = 1047
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 69 YELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A+ GHY++FI D R WL +ND V +L + FGG
Sbjct: 585 YHLHAVLVHEGQANAGHYWAFIYDQPRKSWLKYNDISVTESSWEELERDSFGGLRNASAY 644
Query: 127 CLKLLSTAPQYIDATPPTSSRLVQY 151
CL +S ++ A S + Q+
Sbjct: 645 CLMYISDKVSHVVAGEGDGSEVGQF 669
>sp|Q9LEW0|UBP22_ARATH Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana
GN=UBP22 PE=2 SV=1
Length = 557
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R+ ++ K++++ +P RL+MS Y+ ++ + + + GEGE +
Sbjct: 412 RFEHSLTRKTSRKIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFD--GEGEY--DSSS 467
Query: 62 DFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL-AAEC---F 117
+ + E+E+ V H G + GHY +++R + W +DA + + + EC F
Sbjct: 468 SSSPSAEFEIFAVVTHKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCECYMLF 527
Query: 118 GGEMTVLNACLKLLS 132
+ TV+ K LS
Sbjct: 528 YAQETVIQKAHKELS 542
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 28/121 (23%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R+ ++M+ + K+N FP+ +D+ Y+ +
Sbjct: 424 RFDYDMLRDMMVKINDRHEFPLEIDLEPYLSE--------------------------TA 457
Query: 62 DFNENYEYELIGVTVHTGTADGGHYYSFIR-DRD-KWLLFNDAEVKHFDSSQLAAECFGG 119
D +E++ Y L GV VH G GGHYY+ I+ ++D W F+D V ++ + +GG
Sbjct: 458 DKSESHVYVLHGVLVHGGDLHGGHYYALIKPEKDSNWFKFDDDRVTRATIKEVLEDNYGG 517
Query: 120 E 120
E
Sbjct: 518 E 518
>sp|Q9UHP3|UBP25_HUMAN Ubiquitin carboxyl-terminal hydrolase 25 OS=Homo sapiens GN=USP25
PE=1 SV=4
Length = 1055
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 69 YELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A+ GHY+++I D +W+ +ND V +L + FGG
Sbjct: 591 YRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAY 650
Query: 127 CLKLLSTAPQYI 138
CL ++ Q++
Sbjct: 651 CLMYINDKAQFL 662
>sp|Q96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase 28 OS=Homo sapiens GN=USP28
PE=1 SV=1
Length = 1077
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 69 YELIGVTVHTGTADGGHYYSFI--RDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A+ GHY+++I + R WL +ND V ++ + +GG V
Sbjct: 584 YRLHAVLVHEGQANAGHYWAYIYNQPRQSWLKYNDISVTESSWEEVERDSYGGLRNVSAY 643
Query: 127 CLKLLSTAPQYIDA-TPPTSS 146
CL ++ Y +A PT S
Sbjct: 644 CLMYINDKLPYFNAEAAPTES 664
>sp|P57080|UBP25_MOUSE Ubiquitin carboxyl-terminal hydrolase 25 OS=Mus musculus GN=Usp25
PE=1 SV=2
Length = 1055
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 69 YELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A+ GHY+++I D +W+ +ND V +L + FGG
Sbjct: 592 YRLHAVLVHEGQANAGHYWAYIFDHRESRWMKYNDIAVTKSSWEELVRDSFGGYRNASAY 651
Query: 127 CLKLLSTAPQYI 138
CL + Q++
Sbjct: 652 CLMYIDDKAQFL 663
>sp|Q86UV5|UBP48_HUMAN Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48
PE=1 SV=1
Length = 1035
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 32/115 (27%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MR+ F+ T K+K+NT+ F LDM YVE +GG
Sbjct: 297 MRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEH------------------------KGG 332
Query: 61 EDFNENYEYELIGVTVHTG-TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
+Y YEL V +H G +A GHY + ++D +W FND +++ + +L
Sbjct: 333 -----SYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKL 382
>sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP6 PE=1 SV=1
Length = 499
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 58 EGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRDR---DKWLLFNDAEVKHFDSSQLA 113
E GE N + Y LIGV H G ++ GHY +FIRD +KW FND +V + ++
Sbjct: 421 EKGE--NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIE 478
Query: 114 AECFGGE 120
+ GGE
Sbjct: 479 SLAGGGE 485
>sp|Q9UMW8|UBP18_HUMAN Ubl carboxyl-terminal hydrolase 18 OS=Homo sapiens GN=USP18 PE=1
SV=1
Length = 372
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F++ K+ FP LD S ++P + E + GG+
Sbjct: 259 FSIRNSQTRKICHSLYFPQSLDFS-----QILPMK------RESCDAEEQSGGQ------ 301
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEV 104
YEL V H G AD GHY +IR+ KW FND+ +
Sbjct: 302 ----YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNI 339
>sp|Q3LFD5|UBP41_HUMAN Putative ubiquitin carboxyl-terminal hydrolase 41 OS=Homo sapiens
GN=USP41 PE=2 SV=2
Length = 358
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F++ K+ FP LD S ++P + E + GG+
Sbjct: 259 FSIRNSQTRKICHSLYFPQSLDFS-----QILPMK------RESCDAEEQSGGQ------ 301
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEV 104
YEL V H G AD GHY +IR+ KW FND+ +
Sbjct: 302 ----YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNI 339
>sp|Q5I043|UBP28_MOUSE Ubiquitin carboxyl-terminal hydrolase 28 OS=Mus musculus GN=Usp28
PE=2 SV=1
Length = 1051
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 69 YELIGVTVHTGTADGGHYYSFI--RDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A GHY+++I + R WL +ND V +L + +GG V
Sbjct: 589 YRLHAVLVHEGQASAGHYWAYIYNQPRQTWLKYNDISVTESSWEELERDSYGGLRNVSAY 648
Query: 127 CL 128
CL
Sbjct: 649 CL 650
>sp|Q9WTV6|UBP18_MOUSE Ubl carboxyl-terminal hydrolase 18 OS=Mus musculus GN=Usp18 PE=2
SV=2
Length = 368
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 13 EKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELI 72
EK+ +FP LD S ++P EE L + + + E+ YEL
Sbjct: 263 EKICHSVNFPQSLDFS-----QVLPT---EEDL-GDTKEQSEI------------HYELF 301
Query: 73 GVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEV 104
V H G AD GHY ++IR+ KW FND+ V
Sbjct: 302 AVIAHVGMADFGHYCAYIRNPVDGKWFCFNDSHV 335
>sp|O75317|UBP12_HUMAN Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12
PE=1 SV=2
Length = 370
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N + Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 290 SGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 344
>sp|Q52KZ6|UB12A_XENLA Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis
GN=usp12-a PE=2 SV=1
Length = 370
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N + Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 290 SGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 344
>sp|Q5M981|UB12B_XENLA Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis
GN=usp12-b PE=2 SV=2
Length = 370
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N + Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 290 SGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 344
>sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48
PE=2 SV=1
Length = 1033
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 32/115 (27%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MR+ F+ T K+K+NT+ F LDM ++E+
Sbjct: 295 MRFVFDRQTGHKKKLNTYIGFSELLDMEPFMEQK-------------------------- 328
Query: 61 EDFNENYEYELIGVTVHTG-TADGGHYYSFIRDRD--KWLLFNDAEVKHFDSSQL 112
N Y YEL V +H G +A GHY + ++D +W FND +++ + +L
Sbjct: 329 ---NGVYVYELSAVLIHRGVSAYSGHYIAHVKDPQTGEWYKFNDEDIEKMEGKKL 380
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12
PE=2 SV=1
Length = 369
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N + Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 289 SGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 343
>sp|D3ZJ96|UBP28_RAT Ubiquitin carboxyl-terminal hydrolase 28 OS=Rattus norvegicus
GN=Usp28 PE=2 SV=2
Length = 1083
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 69 YELIGVTVHTGTADGGHYYSFI--RDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
Y L V VH G A GHY+++I + R WL +ND V +L + +GG V
Sbjct: 590 YRLHAVLVHEGQASAGHYWAYIYNQPRQIWLKYNDISVTESSWEELERDSYGGLRNVSAY 649
Query: 127 CL 128
CL
Sbjct: 650 CL 651
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12
PE=2 SV=2
Length = 370
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N + Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 290 SGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 344
>sp|Q7JKC3|UBP7_CAEEL Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis elegans
GN=usp-7 PE=2 SV=1
Length = 1135
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 11 LKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYE 70
+++K+N FSFP +++++ E L P +E+ + Y
Sbjct: 393 VEQKINERFSFPEKMNLASCCE--LGPMLTEEDCV-----------------------YS 427
Query: 71 LIGVTVHTGTADGGHYYSFIR-----------DRDKWLLFNDAEVKHFDSSQLAAECFGG 119
L V VH+G GGHY ++I KW F+D V + FGG
Sbjct: 428 LHAVLVHSGEFHGGHYVTYINVNLHESAVDPTSSAKWCKFDDDVVSRTTTDDAIVSNFGG 487
Query: 120 EMTVLNACLKLLSTAPQYIDA--TPPTSSRLVQYFTVLNYFSMTR 162
E T+ ++ L+ ID P S++ Q +V F M R
Sbjct: 488 EKTMNSSAYMLVYVRDNAIDQFLAPIPDSQIPQ--SVSRTFEMER 530
>sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp5 PE=3 SV=3
Length = 1108
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 28/121 (23%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R+ ++ + K+N + FP+ D + L EA
Sbjct: 407 RFEYDFERDMMIKINDRYEFPLEFDAKAF--------------LSPEA------------ 440
Query: 62 DFNENYEYELIGVTVHTGTADGGHYYSFIR-DRD-KWLLFNDAEVKHFDSSQLAAECFGG 119
D ++N EY L GV VH+G GHYY+ ++ ++D W ++D V ++ E +GG
Sbjct: 441 DQSQNCEYVLYGVLVHSGDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLEENYGG 500
Query: 120 E 120
+
Sbjct: 501 D 501
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12
PE=2 SV=1
Length = 372
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 292 SGDATNPERLYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 346
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 59 GGEDFNENYEYELIGVTVHTGTA-DGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
G+ N Y+L+ V VH G+ + GHY + ++ D WLLF+D V+ D+ +
Sbjct: 291 SGDATNPERLYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAI 345
>sp|Q5RE63|UBP18_PONAB Ubl carboxyl-terminal hydrolase 18 OS=Pongo abelii GN=USP18 PE=2
SV=1
Length = 375
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F++ K+ FP LD S ++P K KS E + GG+
Sbjct: 262 FSIRNSQTRKICHSLYFPQSLDFS-----QVLP-----TKQKS-CDAEEQPGGQ------ 304
Query: 65 ENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEV 104
+EL V H G AD GHY +IR+ KW FND+ +
Sbjct: 305 ----FELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNI 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,262,891
Number of Sequences: 539616
Number of extensions: 3629988
Number of successful extensions: 7758
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 7552
Number of HSP's gapped (non-prelim): 252
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)