Query psy14778
Match_columns 210
No_of_seqs 235 out of 1492
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:23:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nb8_A Ubiquitin carboxyl-term 99.9 1E-26 3.5E-31 206.3 9.0 115 1-146 200-316 (353)
2 1vjv_A Ubiquitin carboxyl-term 99.9 5.1E-26 1.7E-30 205.0 12.6 133 1-145 231-414 (415)
3 2ayn_A Ubiquitin carboxyl-term 99.9 5.1E-26 1.8E-30 203.4 10.2 138 1-150 239-399 (404)
4 2f1z_A Ubiquitin carboxyl-term 99.9 6.9E-25 2.4E-29 203.9 10.3 115 1-146 369-485 (522)
5 2y6e_A Ubiquitin carboxyl-term 99.9 4.1E-24 1.4E-28 189.5 9.2 99 1-148 261-362 (367)
6 3i3t_A Ubiquitin carboxyl-term 99.9 1.6E-23 5.4E-28 183.0 8.6 95 1-145 256-351 (355)
7 3nhe_A Ubiquitin carboxyl-term 99.9 1.6E-23 5.6E-28 182.5 7.8 96 1-146 246-344 (348)
8 2gfo_A Ubiquitin carboxyl-term 99.9 4.2E-23 1.4E-27 185.9 9.9 96 1-145 298-396 (396)
9 3mhs_A Ubiquitin carboxyl-term 99.9 6.3E-23 2.1E-27 188.0 10.4 105 1-144 368-473 (476)
10 3ihp_A Ubiquitin carboxyl-term 99.8 1.5E-20 5.3E-25 184.3 10.4 62 63-145 791-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.1 1.7E-10 5.7E-15 103.2 6.3 88 10-101 178-308 (374)
12 3mp2_A Non-structural protein 52.2 16 0.00054 29.9 4.4 34 73-108 162-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 41.6 27 0.00094 30.2 4.4 35 74-109 262-296 (315)
14 1qmy_A Protease, leader protea 39.1 14 0.00049 28.6 2.0 28 82-109 117-144 (167)
15 2ww6_A Fibritin, T4 fibritin; 36.6 20 0.00068 19.6 1.7 14 88-101 12-25 (27)
16 3o65_A Putative ataxin-3-like 25.6 68 0.0023 25.7 3.9 32 71-106 110-141 (191)
17 2f1z_A Ubiquitin carboxyl-term 25.0 17 0.00058 32.9 0.3 12 124-135 474-485 (522)
No 1
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.93 E-value=1e-26 Score=206.28 Aligned_cols=115 Identities=27% Similarity=0.495 Sum_probs=88.0
Q ss_pred CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT 80 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs 80 (210)
|||.|+..++...|+++.|.||+.|||++|+... ....+..|+|+|||+|.|+
T Consensus 200 kRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~---------------------------~~~~~~~Y~L~avv~H~G~ 252 (353)
T 1nb8_A 200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT---------------------------DPKDPANYILHAVLVHSGD 252 (353)
T ss_dssp CCCC--------CCCCCCCBCCSEEECGGGBSSC---------------------------CTTSCCEEEEEEEEEEESS
T ss_pred ecEEEecccCceEecCcEEECCCeeehhhhhccc---------------------------CCCCCceEEEEEEEEEeCC
Confidence 7999998778889999999999999999999753 1134578999999999999
Q ss_pred CCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778 81 ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS 146 (210)
Q Consensus 81 ~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~ 146 (210)
+++|||+||+|. +++||.|||+.|+.+++++|++.++||...... .....+||||||+|.+.
T Consensus 253 ~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~----~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 253 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLS----VRHCTNAYMLVYIRESK 316 (353)
T ss_dssp TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-----------CCEEEEEEEEEETTT
T ss_pred CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccc----cCcCCeEEEEEEEECch
Confidence 899999999996 889999999999999999999999998754211 12345688888887764
No 2
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.93 E-value=5.1e-26 Score=205.00 Aligned_cols=133 Identities=28% Similarity=0.453 Sum_probs=97.0
Q ss_pred CccEEecCCceeeecceeeEeCcEEecCcccccccCchhh------hHH-hhhhhh-----cCC----------------
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHY------QEE-KLKSEA-----RGE---------------- 52 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~------~~~-~~~~~~-----~~~---------------- 52 (210)
|||.|+..++...|+++.|.||.+|||++|+......... .+. ....+. ++.
T Consensus 231 kRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e 310 (415)
T 1vjv_A 231 VRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQY 310 (415)
T ss_dssp CCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH
T ss_pred EEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhh
Confidence 7999999888999999999999999999999865321100 000 000000 000
Q ss_pred -------------------CCCCCCCCCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee---CCcEEEecCCceeeeCH
Q psy14778 53 -------------------GEVGGEGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD---RDKWLLFNDAEVKHFDS 109 (210)
Q Consensus 53 -------------------~~~~~~~~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~---~~~W~~fdDs~Vs~v~~ 109 (210)
.+..+..+........|+|+|||+|.| ++++|||+||+|. +++||+|||+.|+.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~ 390 (415)
T 1vjv_A 311 ETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEK 390 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECH
T ss_pred hhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCH
Confidence 000000112234568999999999999 8999999999998 89999999999999999
Q ss_pred HHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778 110 SQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS 145 (210)
Q Consensus 110 ~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~ 145 (210)
++|.+..+||.+ .+||||||+|.+
T Consensus 391 ~~v~~~~~g~~~------------~~aYiLfY~r~~ 414 (415)
T 1vjv_A 391 EKIESLAGGGES------------DSALILMYKGFG 414 (415)
T ss_dssp HHHHGGGCCTTS------------CEEEEEEEEETT
T ss_pred HHHhhhcCCCCc------------ceEEEEEEEecC
Confidence 999998888754 348888888754
No 3
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.93 E-value=5.1e-26 Score=203.40 Aligned_cols=138 Identities=21% Similarity=0.361 Sum_probs=96.5
Q ss_pred CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHh-------hhhhh---c-CCC----------CCCCCC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEK-------LKSEA---R-GEG----------EVGGEG 59 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~-------~~~~~---~-~~~----------~~~~~~ 59 (210)
|||.|+..++...|+++.|.||+.|||.+|+............. ...+. + .+. ......
T Consensus 239 kRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (404)
T 2ayn_A 239 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFAD 318 (404)
T ss_dssp ECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSC
T ss_pred EEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhcccccccccccccccccccc
Confidence 79999988888899999999999999999998642110000000 00000 0 000 000001
Q ss_pred CCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee-CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcc
Q psy14778 60 GEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD-RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQY 137 (210)
Q Consensus 60 ~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~-~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY 137 (210)
+........|+|+|||+|.| ++++|||+||+|. +++||+|||+.|+.+++++|++..+||.+ .+||
T Consensus 319 ~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~------------~~aY 386 (404)
T 2ayn_A 319 DIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDW------------HIAY 386 (404)
T ss_dssp TTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSS------------CEEE
T ss_pred ccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCC------------ceEE
Confidence 11234568999999999999 7999999999999 99999999999999999999988888754 4589
Q ss_pred eeeecCCCCCccc
Q psy14778 138 IDATPPTSSRLVQ 150 (210)
Q Consensus 138 ~lfy~r~~~~~~~ 150 (210)
||||+|.+...++
T Consensus 387 iLfY~r~~~~~~~ 399 (404)
T 2ayn_A 387 VLLYGPRRVEIME 399 (404)
T ss_dssp EEEEECC------
T ss_pred EEEEEecCCCCCC
Confidence 9999988765444
No 4
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.91 E-value=6.9e-25 Score=203.89 Aligned_cols=115 Identities=27% Similarity=0.492 Sum_probs=94.8
Q ss_pred CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT 80 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs 80 (210)
|||.|+..++...|+++.|+||+.|||++|+... ....+..|+|+|||+|.|+
T Consensus 369 kRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~---------------------------~~~~~~~Y~L~avv~H~G~ 421 (522)
T 2f1z_A 369 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT---------------------------DPKDPANYILHAVLVHSGD 421 (522)
T ss_dssp CCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC---------------------------CTTSCCEEEEEEEEEEECS
T ss_pred EeEEEcccCCcceEcCcEEeCCCeecchhhhccc---------------------------cCCCCcEEEEEEEEEeccc
Confidence 7999998888899999999999999999999753 1134578999999999999
Q ss_pred CCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778 81 ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS 146 (210)
Q Consensus 81 ~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~ 146 (210)
+++|||+||+|. +++||+|||+.|+.+++++|+..+|||..... -..+..+||||||+|.+.
T Consensus 422 ~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~----~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 422 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL----SVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC------------CEEEEEEEEEETTS
T ss_pred CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc----ccCcCCceEEEEEEECCc
Confidence 899999999996 88999999999999999999999999875421 122345688888888763
No 5
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=189.46 Aligned_cols=99 Identities=27% Similarity=0.563 Sum_probs=84.3
Q ss_pred CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG 79 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G 79 (210)
|||.|+. ....|+++.|.||. .|||++|+... ......|+|+|||+|.|
T Consensus 261 kRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~----------------------------~~~~~~Y~L~avv~H~G 310 (367)
T 2y6e_A 261 KRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL----------------------------SARPYVYDLIAVSNHYG 310 (367)
T ss_dssp ECEEECS--SCEEECCCCEECCSSCEECGGGBSCS----------------------------SSCCCEEEEEEEEEEEC
T ss_pred eCeeecC--ccceecCceEEecCCcCChhhhccCC----------------------------CCCCceEEEEEEeecCC
Confidence 7999985 46789999999998 59999999753 12457999999999999
Q ss_pred CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCCCc
Q psy14778 80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRL 148 (210)
Q Consensus 80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~~~ 148 (210)
++++|||+||+|. +++||+|||+.|+.+++++|.+ ..||||||+|.+...
T Consensus 311 ~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVT-------------------KAAYVLFYQRRDDEF 362 (367)
T ss_dssp SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSS-------------------TTEEEEEEEECCC--
T ss_pred CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCC-------------------CCcEEEEEEEcCCCC
Confidence 9999999999999 6899999999999999988853 358999999887543
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.89 E-value=1.6e-23 Score=183.02 Aligned_cols=95 Identities=21% Similarity=0.413 Sum_probs=81.0
Q ss_pred CccEEecCCceeeecceeeEeCcE-EecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG 79 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~-LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G 79 (210)
|||.++. +...|+++.|.||.+ |||.+|+... .....|+|+|||+|.|
T Consensus 256 kRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~-----------------------------~~~~~Y~L~avv~H~G 304 (355)
T 3i3t_A 256 NRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDK-----------------------------AGSPVYQLYALCNHSG 304 (355)
T ss_dssp CCEECCS--SCCEECCCCCBCCSSCEECGGGBC---------------------------------CCEEEEEEEEEEEE
T ss_pred hheecCC--CCceECCcceeCCccccCchhhccCC-----------------------------CCCcceEEEEEEEecC
Confidence 7998874 677899999999965 9999998643 2346899999999999
Q ss_pred CCCCceeEEEEeeCCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778 80 TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS 145 (210)
Q Consensus 80 s~~sGHY~ayvr~~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~ 145 (210)
++++|||+||+|..+.|++|||+.|+++++++|.+ .+||||||+|.+
T Consensus 305 ~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~ 351 (355)
T 3i3t_A 305 SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVAS-------------------SEGYVLFYQLMQ 351 (355)
T ss_dssp ETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHT-------------------SCCSEEEEEEC-
T ss_pred CCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCC-------------------CCcEEEEEEecc
Confidence 99999999999998899999999999999999975 248999998875
No 7
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.89 E-value=1.6e-23 Score=182.51 Aligned_cols=96 Identities=29% Similarity=0.552 Sum_probs=82.4
Q ss_pred CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG 79 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G 79 (210)
|||.++. +...|+++.|+||. .|||++|+... .....|+|+|||+|.|
T Consensus 246 kRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~-----------------------------~~~~~Y~L~avv~H~G 294 (348)
T 3nhe_A 246 KRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN-----------------------------TNHAVYNLYAVSNHSG 294 (348)
T ss_dssp CCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT-----------------------------CCCCEEEEEEEEEEEE
T ss_pred EcccccC--CceeecCcceeccCCcCCHhhhcCCC-----------------------------CCCCcEEEEEEEEccC
Confidence 7988764 67889999999996 59999998653 2346899999999999
Q ss_pred CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778 80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS 146 (210)
Q Consensus 80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~ 146 (210)
++.+|||+||+|. +++|++|||+.|+++++++|.+ .+||||||+|.+.
T Consensus 295 ~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 295 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT-------------------SDAYLLFYELASP 344 (348)
T ss_dssp CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCC-------------------TTEEEEEEEECC-
T ss_pred CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCC-------------------CCceEEEEEecCC
Confidence 9999999999999 7899999999999999998843 3589999988764
No 8
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.88 E-value=4.2e-23 Score=185.87 Aligned_cols=96 Identities=32% Similarity=0.614 Sum_probs=81.6
Q ss_pred CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG 79 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G 79 (210)
|||.|+. ....|+++.|.||. .|||++|+..+ ......|+|+|||+|.|
T Consensus 298 kRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~----------------------------~~~~~~Y~L~avv~H~G 347 (396)
T 2gfo_A 298 KRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP----------------------------KNNLKKYNLFSVSNHYG 347 (396)
T ss_dssp CCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC----------------------------CSSCCCBEEEEEEEEES
T ss_pred cceeccC--ccceecCceEecchhhccccccccCC----------------------------CCCCceEEEEEEEEecC
Confidence 7999985 35689999999996 59999999753 12346899999999999
Q ss_pred CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778 80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS 145 (210)
Q Consensus 80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~ 145 (210)
++++|||+||+|. +++||.|||+.|+.+++++|.. ..||||||+|.+
T Consensus 348 ~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~ 396 (396)
T 2gfo_A 348 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKS-------------------SAAYILFYTSLG 396 (396)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSC-------------------TTEEEEEEECC-
T ss_pred CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCC-------------------CCceEEEEEEcC
Confidence 9999999999998 5899999999999999998853 358888888753
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.88 E-value=6.3e-23 Score=187.95 Aligned_cols=105 Identities=24% Similarity=0.448 Sum_probs=86.5
Q ss_pred CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT 80 (210)
Q Consensus 1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs 80 (210)
|||.|+. ++...|+++.|.||++|||++|+....... ...........|+|+|||+|.|+
T Consensus 368 kRF~~~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~-------------------~~~~~~~~~~~Y~L~avv~H~G~ 427 (476)
T 3mhs_A 368 KRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDK-------------------HSENGKVPDIIYELIGIVSHKGT 427 (476)
T ss_dssp CCEEECT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC---------------------CCCBCCCEEEEEEEEEEEEEC
T ss_pred eeccccC-CCCeEECCEEEcCCCeeechhhcCcccccc-------------------cccccCCCCCcEEEEEEEEeCCC
Confidence 7999986 467889999999999999999998652110 00112345689999999999999
Q ss_pred CCCceeEEEEee-CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCC
Q psy14778 81 ADGGHYYSFIRD-RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPT 144 (210)
Q Consensus 81 ~~sGHY~ayvr~-~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~ 144 (210)
+++|||+||+|. +++||+|||+.|+++++++|.+ ..||||||+|.
T Consensus 428 ~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~ 473 (476)
T 3mhs_A 428 VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLK-------------------EQAYLLFYTIR 473 (476)
T ss_dssp SSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTT-------------------SCEEEEEEEEE
T ss_pred CCCCceEEEEECCCCcEEEEeCCceEECCHHHhcc-------------------CCcEEEEEEEe
Confidence 999999999998 8899999999999999999975 24788888765
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=184.30 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=52.6
Q ss_pred CCCCeeEEEeEEEEeeC-CCCCceeEEEEeeCCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeee
Q psy14778 63 FNENYEYELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDAT 141 (210)
Q Consensus 63 ~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy 141 (210)
...+..|+|+|||+|.| ++++|||+||+|.+++|++|||+.|+.+.+ . ....||||||
T Consensus 791 ~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~--~-------------------~~~~aYilfY 849 (854)
T 3ihp_A 791 RDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEK--P-------------------PKDLGYIYFY 849 (854)
T ss_dssp CCCCSEEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEECSS--C-------------------CTTSCSEEEE
T ss_pred CCCCceEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEccc--c-------------------CCCcceEEEE
Confidence 34556899999999999 888999999999999999999999999732 1 2236999999
Q ss_pred cCCC
Q psy14778 142 PPTS 145 (210)
Q Consensus 142 ~r~~ 145 (210)
+|.+
T Consensus 850 ~R~~ 853 (854)
T 3ihp_A 850 QRVA 853 (854)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=103.23 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=54.6
Q ss_pred ceeeecceeeEeCcEEecCcccccccCchhhhH----------------Hh-------hh--hh------hcCCCCC--C
Q psy14778 10 MLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQE----------------EK-------LK--SE------ARGEGEV--G 56 (210)
Q Consensus 10 ~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~----------------~~-------~~--~~------~~~~~~~--~ 56 (210)
+...||-..|.||++||+.++|+++...-.... .. .. .+ ....... .
T Consensus 178 gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (374)
T 2vhf_A 178 GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVS 257 (374)
T ss_dssp SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECC
T ss_pred CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccc
Confidence 567799999999999999999998754210000 00 00 00 0000000 0
Q ss_pred C----C---CCCCCCCCeeEEEeEEEEeeCCCCCceeEEEEee---CCcEEEecC
Q psy14778 57 G----E---GGEDFNENYEYELIGVTVHTGTADGGHYYSFIRD---RDKWLLFND 101 (210)
Q Consensus 57 ~----~---~~~~~~~~~~Y~L~aVV~H~Gs~~sGHY~ayvr~---~~~W~~fdD 101 (210)
. . .+........|+|+|||+ +++|||+||||. +++|+.||-
T Consensus 258 ~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 258 LPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp C----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred cCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 0 0 123344558999999999 899999999998 799999974
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=52.21 E-value=16 Score=29.88 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.4
Q ss_pred EEEEeeCCCCCceeEEEEeeCCcEEEecCCceeeeC
Q psy14778 73 GVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFD 108 (210)
Q Consensus 73 aVV~H~Gs~~sGHY~ayvr~~~~W~~fdDs~Vs~v~ 108 (210)
+-++-.|+.++|||+.+....+ +.+|-..+..++
T Consensus 162 ~~~vF~G~~~~GHY~~~~~~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGTTQNGHYMVDDIEHG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESCTTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred eEEEEEcCCCCceEEEEecccc--eEEeCCceeEcc
Confidence 4445599999999999976644 788888888775
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=41.57 E-value=27 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.9
Q ss_pred EEEeeCCCCCceeEEEEeeCCcEEEecCCceeeeCH
Q psy14778 74 VTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDS 109 (210)
Q Consensus 74 VV~H~Gs~~sGHY~ayvr~~~~W~~fdDs~Vs~v~~ 109 (210)
..+-.|+..+|||+.+.-.... +.+|-..+.+++.
T Consensus 262 a~vF~G~~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 262 ANEYTGNYQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EEEEESCGGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEECCCCccceEEEecCCce-eEEeCCcceeccc
Confidence 3345898889999998875444 7899888888764
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=39.11 E-value=14 Score=28.57 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=24.6
Q ss_pred CCceeEEEEeeCCcEEEecCCceeeeCH
Q psy14778 82 DGGHYYSFIRDRDKWLLFNDAEVKHFDS 109 (210)
Q Consensus 82 ~sGHY~ayvr~~~~W~~fdDs~Vs~v~~ 109 (210)
..+|-+-++-.+..||.+||+...+.++
T Consensus 117 g~eHAVFa~~TS~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 117 GQEHAVFACVTSNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp TTTEEEEEECCTTSSEEEETTEEEECCC
T ss_pred CCCceEEEEEccCceEEecccccccCCC
Confidence 4589998988899999999999998776
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=36.56 E-value=20 Score=19.61 Aligned_cols=14 Identities=21% Similarity=0.845 Sum_probs=11.7
Q ss_pred EEEeeCCcEEEecC
Q psy14778 88 SFIRDRDKWLLFND 101 (210)
Q Consensus 88 ayvr~~~~W~~fdD 101 (210)
+|+|.++.|+..++
T Consensus 12 ~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKFGEWVLLST 25 (27)
T ss_dssp EEEEETTEEEEGGG
T ss_pred eeEEEcCeEEEccc
Confidence 58999999998764
No 16
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=25.56 E-value=68 Score=25.66 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=25.5
Q ss_pred EeEEEEeeCCCCCceeEEEEeeCCcEEEecCCceee
Q psy14778 71 LIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKH 106 (210)
Q Consensus 71 L~aVV~H~Gs~~sGHY~ayvr~~~~W~~fdDs~Vs~ 106 (210)
..|.|++. .-|.+|..|.++.||.+|-..-.+
T Consensus 110 ~~~FI~N~----~~HWfaiRkigg~WyNLdS~l~~P 141 (191)
T 3o65_A 110 ERSFICNY----KQHWFTIRKFGKHWFNLNSLLAGP 141 (191)
T ss_dssp CCEEEEEE----SSCEEEEEEETTEEEECCTTSSSC
T ss_pred hhhhhhcc----ccceeeEEecCCEEEEccCCCCCC
Confidence 45788886 489999999999999998754333
No 17
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=25.02 E-value=17 Score=32.85 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=6.8
Q ss_pred ceeeeeeccCCC
Q psy14778 124 LNACLKLLSTAP 135 (210)
Q Consensus 124 ~~~~L~y~~~~~ 135 (210)
.+|+|||.+...
T Consensus 474 ~aYiLfY~r~~~ 485 (522)
T 2f1z_A 474 NAYMLVYIRESK 485 (522)
T ss_dssp EEEEEEEEETTS
T ss_pred ceEEEEEEECCc
Confidence 455666665544
Done!