RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14778
(210 letters)
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 153 bits (388), Expect = 2e-45
Identities = 54/124 (43%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
R+ F+ TM++ K+N F FP+ LDM Y EK L + EK SE
Sbjct: 201 KRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSE------------ 248
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
+Y YEL GV VH+G A GGHYYS+I+DR KW FND V FD + ECFG
Sbjct: 249 -----SYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFG 303
Query: 119 GEMT 122
GE T
Sbjct: 304 GEET 307
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 82.5 bits (204), Expect = 3e-19
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 26/114 (22%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
R++FN KEK+NT SFP+ LD+S Y+ +
Sbjct: 148 KRFSFNE-DGTKEKLNTKVSFPLELDLSPYLSEGEKDS---------------------- 184
Query: 61 EDFNENYEYELIGVTVHTGT-ADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQ 111
+ N +Y+YEL+ V VH+GT AD GHY ++++D KW FND +V +
Sbjct: 185 DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEE 238
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 71.7 bits (176), Expect = 6e-15
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 30/106 (28%)
Query: 3 YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
FN T +K++ FP+ LD+S Y+E+ L +
Sbjct: 218 EDFNRETE--KKISDRVEFPLELDLSSYLEEELEGE------------------------ 251
Query: 63 FNENYEYELIGVTVHTG-TADGGHYYSFIR--DRDKWLLFNDAEVK 105
+YEL+ V VH+G + GGHY ++I+ +++KW+ F+D +V
Sbjct: 252 -EPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVS 296
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 67.0 bits (164), Expect = 3e-13
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 13 EKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELI 72
K++T+ FP+ L+M+ Y + + + + +Y Y+L
Sbjct: 236 RKIDTYVQFPLELNMTPY-----TSSSIGDTQDSNS--------------LDPDYTYDLF 276
Query: 73 GVTVHTGTADGGHYYSFIRDR-DKWLLFNDAEVKHFDSSQ-LAAECF 117
V VH GT D GHY ++ R +W F+DA + + L ++ +
Sbjct: 277 AVVVHKGTLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAY 323
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 66.7 bits (163), Expect = 3e-13
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 31/115 (26%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
+R+ F+ T K+K+N SFP LDM Y L
Sbjct: 206 LRFVFDRKTGAKKKLNASISFPEILDMGEY----LAESDEG------------------- 242
Query: 61 EDFNENYEYELIGVTVHTGT-ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
+Y YEL GV +H G A GHY + I+D +W FND +V+ L
Sbjct: 243 -----SYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPL 292
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 62.6 bits (152), Expect = 1e-11
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R+ ++ + K+N + FP+ +D+ ++++ + KSE
Sbjct: 388 RFEYDFERDMMVKINDRYEFPLEIDLLPFLDR---------DADKSE------------- 425
Query: 62 DFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFGG 119
N + Y L GV VH+G GHYY+ ++ +W F+D V ++ E FGG
Sbjct: 426 --NSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGG 483
Query: 120 E 120
+
Sbjct: 484 D 484
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 56.9 bits (138), Expect = 5e-10
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 5 FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
F+ K+ T +FP+ LD++ YV+ F
Sbjct: 136 FSFSRGSTRKLTTPVTFPLNDLDLTPYVD---------------------------TRSF 168
Query: 64 NENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSS 110
++Y+L V H G+ +GGHY ++ ++ + W F+D+ V S
Sbjct: 169 TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 54.2 bits (131), Expect = 6e-09
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 32/109 (29%)
Query: 5 FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
F+ K+N SFP LD+S Y+ + P
Sbjct: 214 FSNFRG--GKINKQISFPETLDLSPYMSQ---PND------------------------- 243
Query: 65 ENYEYELIGVTVHTGT-ADGGHYYSFIRDRD-KWLLFNDAEVKHFDSSQ 111
+Y+L V VH+G GHYY +++ + KW +D++V
Sbjct: 244 GPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIET 292
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 50.4 bits (121), Expect = 1e-07
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 69 YELIGVTVHTG-TADGGHYYSFIR--DRDKWLLFNDAEV 104
YEL+ V H G +AD GHY +++R + KW+ F+D +V
Sbjct: 241 YELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 47.6 bits (113), Expect = 9e-07
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 69 YELIGVTVHTGTADGGHYYSFI--RDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
YEL V VH G A+ GHY+++I + R +W +ND V ++ + FGG
Sbjct: 164 YELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAY 223
Query: 127 CL 128
CL
Sbjct: 224 CL 225
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 45.5 bits (108), Expect = 6e-06
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 23/82 (28%)
Query: 14 KVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIG 73
KV+ H SFP LD++ + P+ E + Y L G
Sbjct: 170 KVSRHVSFPEILDLAPF----CDPKCNSSED-------------------KSSVLYRLYG 206
Query: 74 VTVHTGTADGGHYYSFIRDRDK 95
V H+GT GHY ++++ R
Sbjct: 207 VVEHSGTMRSGHYVAYVKVRPP 228
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 45.2 bits (107), Expect = 7e-06
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 32/134 (23%)
Query: 2 RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
R++++ T ++EK+ + S L + VE ++++ +S GE
Sbjct: 185 RFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVT------ 238
Query: 62 DFNENYEYELIGVTVHTGTA-DGGHYYSFIRD----------------------RDKWLL 98
Y L V VH+G + + GHY+++ RD W L
Sbjct: 239 ---RQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYL 295
Query: 99 FNDAEVKHFDSSQL 112
FND+ V +
Sbjct: 296 FNDSRVTFSSFESV 309
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 43.1 bits (102), Expect = 4e-05
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 69 YELIGVTVHTGT-ADGGHYYSFIR----DRDKWLLFNDAEV 104
YELI H GT GHY + I+ KW+LFND +V
Sbjct: 252 YELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKV 292
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 42.7 bits (101), Expect = 5e-05
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 62 DFNENYE--YELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
D EN + YEL+ V VH G + GHY S ++ WLLF+D V+ D + +
Sbjct: 228 DDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAV 281
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 40.9 bits (96), Expect = 2e-04
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 60 GEDFNENYEYELIGVTVHTG-TADGGHYYSFIR----DRDKWLLFND 101
+ N++YEL GV H G + GH SFIR + D+W LFND
Sbjct: 247 EGPLSGNFKYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFND 293
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 39.6 bits (92), Expect = 7e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 69 YELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVK 105
Y L+GV H GT +GGHY+S ++ W +++D++V+
Sbjct: 357 YSLLGVVCHNGTLNGGHYFSEVKRSGTWNVYDDSQVR 393
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 39.0 bits (91), Expect = 9e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 66 NYEYELIGVTVHTGTADGGHYYSFIRDRDK--WLLFNDAEVKHFDSS 110
+Y Y L V +H G A GHY+ +I+D ++ W +ND V +S
Sbjct: 278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPAS 324
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 37.2 bits (86), Expect = 0.003
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 58 EGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVK 105
E +N Y L V +H+G T GHY +++R WLLF+D+EVK
Sbjct: 261 EEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVK 305
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 36.4 bits (84), Expect = 0.008
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 69 YELIGVTVHTGTADGGHYYSFIRDRD--KWLLFNDAEVKHFDSSQLAAE 115
Y+L V H G GGHY ++ R+ W LF+D+ + D
Sbjct: 764 YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTS 812
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 34.8 bits (80), Expect = 0.022
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 61 EDFNENYEYELIGVTVHTGTAD-GGHYYSFIR------DRDKWLLFND 101
Y+YEL+G + G H F+ +W LFND
Sbjct: 205 RGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFND 252
>gnl|CDD|192646 pfam10626, TraO, Conjugative transposon protein TraO. This is a
family of conjugative transposon proteins.
Length = 168
Score = 33.5 bits (77), Expect = 0.034
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 59 GGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFN 100
GGE +NY Y + V T +GG+YY+F+ D K +
Sbjct: 47 GGEYLQKNYPYRDTRIPVSQFTGEGGYYYNFLSDAGKNFFLS 88
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 34.3 bits (78), Expect = 0.037
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 60 GEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD----RDKWLLFNDAEVKHFDS 109
++ Y L V H G + GHY FIR + KW+L ND + S
Sbjct: 679 DLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSS 733
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 31.6 bits (72), Expect = 0.24
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 22/73 (30%)
Query: 67 YEYELIGVTVHTGTADGGHYYSFIRDR----------------------DKWLLFNDAEV 104
Y L V VH G+ GHY + R W +D V
Sbjct: 161 VLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTV 220
Query: 105 KHFDSSQLAAECF 117
K S++ +
Sbjct: 221 KEVSESEVLEQKS 233
>gnl|CDD|176557 cd08620, PI-PLCXDc_like_1, Catalytic domain of uncharacterized
hypothetical proteins similar to eukaryotic
phosphatidylinositol-specific phospholipase C, X domain
containing proteins. This subfamily corresponds to the
catalytic domain present in a group of uncharacterized
hypothetical proteins found in bacteria and fungi, which
are similar to eukaryotic phosphatidylinositol-specific
phospholipase C, X domain containing proteins
(PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, eukaryotic PI-PLCXDs
contain a single TIM-barrel type catalytic domain, X
domain, and are more closely related to bacterial
PI-PLCs, which participate in Ca2+-independent PI
metabolism, hydrolyzing the membrane lipid
phosphatidylinositol (PI) to produce phosphorylated
myo-inositol and diacylglycerol (DAG). Although the
biological function of eukaryotic PI-PLCXDs still
remains unclear, it may distinct from that of typical
eukaryotic PI-PLCs.
Length = 281
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 83 GGHYYSFIRDRDKWLLFNDAE--VKHFDSSQLAAECFG-GEMTVLNACLKLLSTA 134
G + +F++D +L N E V H +C V+ A + L++A
Sbjct: 76 GQGFDTFLQDVVTFLKANPTEIVVVHITWDGFDNDCARPSAQEVVEALAQALASA 130
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system
protein KefB; Provisional.
Length = 601
Score = 28.1 bits (63), Expect = 3.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 18 HFSFPMRLDMSGYVEKHLMPQHYQEEKLKS---EARGEGE 54
HF RLDM + + LMPQH + S EAR E E
Sbjct: 547 HFR---RLDMR--MLRELMPQHNGDVVQISRAKEARRELE 581
>gnl|CDD|184261 PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional.
Length = 388
Score = 27.6 bits (61), Expect = 4.9
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 143 PTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILI--FVKAIG 187
PT + L Y + L +F M R+ + + P RIL+ + + G
Sbjct: 263 PTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG 309
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 27.3 bits (61), Expect = 5.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 179 ILIFVKAIGLHEALPLLTRK 198
+++ VKA L EALP L
Sbjct: 71 VIVTVKAYQLEEALPSLAPL 90
>gnl|CDD|226921 COG4548, NorD, Nitric oxide reductase activation protein [Inorganic
ion transport and metabolism].
Length = 637
Score = 27.5 bits (61), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 83 GGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECF---GGEMTV 123
G ++ I ++ FND V D +++ +CF GGE+ V
Sbjct: 12 GRAWHRLIGMTGSFIKFNDEAVDLEDLARVLTKCFRALGGEIGV 55
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 27.3 bits (61), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 11 LKEKVNTHFSFPMRLDMSGYVEKH 34
L E++ H +R DMS Y+EKH
Sbjct: 503 LAEELGVHL---LRFDMSEYMEKH 523
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 27.3 bits (61), Expect = 6.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 24 RLDMSGYVEKH 34
RLDMS Y+EKH
Sbjct: 572 RLDMSEYMEKH 582
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 27.2 bits (61), Expect = 6.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 24 RLDMSGYVEKH 34
R+DMS Y+EKH
Sbjct: 628 RIDMSEYMEKH 638
>gnl|CDD|184152 PRK13571, PRK13571, anthranilate synthase component I; Provisional.
Length = 506
Score = 27.3 bits (61), Expect = 7.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 118 GGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKL 166
G + L A L+LL+T + PP + +V + L Y ++ R E+L
Sbjct: 97 GDPLAALRATLELLATPR--LPGLPPLTGGMVGF---LGYDAVRRLERL 140
>gnl|CDD|223056 PHA03362, PHA03362, single-stranded binding protein UL29;
Provisional.
Length = 1189
Score = 26.9 bits (60), Expect = 9.6
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 111 QLAAECFGGEMTVLNACLKLLST---APQYIDATPPTSSRLVQYF---TVLNYFS 159
QL A E A +K + A +I+ TP L Q++ +L Y
Sbjct: 847 QLPASLLSKEDIETIAFVKRFTDEYAAINFINLTPNNIGELAQFYFANLILKYCD 901
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,820,431
Number of extensions: 995547
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 37
Length of query: 210
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 117
Effective length of database: 6,812,680
Effective search space: 797083560
Effective search space used: 797083560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)