RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14778
(210 letters)
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 82.9 bits (203), Expect = 2e-19
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
+R+ + + KV FP+ LDM L + + +
Sbjct: 229 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNT 288
Query: 61 EDF---------------------NENYEYELIGVTVHTG-TADGGHYYSFIRDR-DKWL 97
D N Y+L V H G ++ GHY S+++ + D+W+
Sbjct: 289 SDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWI 348
Query: 98 LFNDAEVKHFDSSQLAAECFGGE 120
F+D +V + GG+
Sbjct: 349 KFDDDKVSIVTPEDILRLSGGGD 371
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 68.7 bits (166), Expect = 2e-14
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 64 NENYEYELIGVTVHTG-TADGGHYYSFIRDR---DKWLLFNDAEVKHFDSSQLAAECFGG 119
N + Y LIGV H G ++ GHY +FIRD +KW FND +V + ++ + GG
Sbjct: 323 NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 382
Query: 120 EMT 122
E
Sbjct: 383 ESD 385
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 63.2 bits (152), Expect = 2e-12
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
N +Y L V+ H G DGGHY ++ ++ R +W F+D EV S +
Sbjct: 282 GPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV 335
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 62.1 bits (149), Expect = 3e-12
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 64 NENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQL 112
+ Y L V+ H+GT GGHY ++ R +W FND+ V SSQ+
Sbjct: 273 TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV 323
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 51.6 bits (122), Expect = 1e-08
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 29/127 (22%)
Query: 1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
MR+ ++ T K+N F FP +L + +++K
Sbjct: 200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKD---------------------- 237
Query: 61 EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
Y L V VH+G GGHY ++ + KW F+D V + +G
Sbjct: 238 -----PANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYG 292
Query: 119 GEMTVLN 125
G L+
Sbjct: 293 GHDDDLS 299
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits
{Rhodospirillum molischianum [TaxId: 1083]}
Length = 56
Score = 25.1 bits (54), Expect = 1.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 166 LMLLPTSWYPSYRILIFVKAIGLHEAL 192
L++ P++W P I+ V AI +H A+
Sbjct: 11 LVINPSTWLPVIWIVATVVAIAVHAAV 37
>d1nova_ b.121.4.4 (A:) Alphanodavirus capsid protein {Nodamura
virus [TaxId: 12288]}
Length = 309
Score = 25.3 bits (55), Expect = 6.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 117 FGGEMTVLNACLKL-LSTAPQYIDATPPTSS 146
F G + V LK L++ Q + PPT+
Sbjct: 129 FAGSIQVYKIPLKQVLNSYSQTVATVPPTNL 159
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP
{Ectothiorhodospira halophila [TaxId: 1053]}
Length = 125
Score = 24.2 bits (51), Expect = 8.6
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 5/83 (6%)
Query: 15 VNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGV 74
N D + K+ E G + Y ++
Sbjct: 42 YNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMT 101
Query: 75 TVH-----TGTADGGHYYSFIRD 92
G Y+ F++
Sbjct: 102 PTKVKVHMKKALSGDSYWVFVKR 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.419
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,736
Number of extensions: 36013
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 10
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)