BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14782
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 405
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
Query: 1 MRNRRRIQRRGPLVVYGKD-RGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTE 59
MRNRR I R+GPL+VYG + + KAFRN+PGV++ +V +LNLL LAPGGH+GRFVIWTE
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTE 259
Query: 60 SAFKKLDALYGSWKTKAPLKKGYSLPQPKMANT 92
SAFKKL+ +YG+++ + KKG+ LP+PKMAN
Sbjct: 260 SAFKKLEEVYGTFEAPSLKKKGFILPRPKMANA 292
>pdb|4A17|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 410
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 1 MRNRRRIQRRGPLVVYGKDRG-LTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTE 59
+RNRR RRGPLVVYG ++ LT+A RNIPGV++ +V++LNLL+LAPGGHVGRF+IWTE
Sbjct: 201 LRNRRYKLRRGPLVVYGNEKSTLTRALRNIPGVDVCNVNRLNLLQLAPGGHVGRFIIWTE 260
Query: 60 SAFKKLDALYGSWKTKAPLKKGYSLPQPKMAN 91
SAFKKL+ ++G++ T K GY L +P +AN
Sbjct: 261 SAFKKLNEIFGTYSTTGVQKSGYQLQRPLLAN 292
>pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 421
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 11 GPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYG 70
GP ++Y +D G+ KAFR PG+ L++VSKLN+LKLAPGGHVGRF IWTESAF+KLD LYG
Sbjct: 206 GPCIIYNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYG 265
Query: 71 SWKTKAPLKKGYSLPQPKMANT 92
+W+ A LK Y+LP KM NT
Sbjct: 266 TWRKAASLKSNYNLPMHKMLNT 287
>pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|H Chain H, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
pdb|2WWB|H Chain H, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 362
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 2 RNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESA 61
RNRR QRRGPLVVY +D G+ KA RN+PGVE +V+ LNLL+LAPG H+GRFVIWTE+A
Sbjct: 195 RNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAA 254
Query: 62 FKKLDALYGSWKTKAPLKKGYSLP 85
F KLD ++GS +T A K GY+LP
Sbjct: 255 FTKLDQVWGS-ETVASSKVGYTLP 277
>pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|C Chain C, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|C Chain C, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|C Chain C, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 362
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 2 RNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESA 61
RNRR QRRGPLVVY +D G+ KA RN+PGVE +V+ LNLL+LAPG H+GRFVIWTE+A
Sbjct: 195 RNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAA 254
Query: 62 FKKLDALYGSWKTKAPLKKGYSLP 85
F KLD ++GS +T A K GY+LP
Sbjct: 255 FTKLDQVWGS-ETVASSKVGYTLP 277
>pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 361
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 2 RNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESA 61
RNRR QRRGPLVVY +D G+ KA RN+PGVE +V+ LNLL+LAPG H+GRFVIWTE+A
Sbjct: 194 RNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAA 253
Query: 62 FKKLDALYGSWKTKAPLKKGYSLP 85
F KLD ++GS +T A K GY+LP
Sbjct: 254 FTKLDQVWGS-ETVASSKVGYTLP 276
>pdb|3ZF7|RR Chain r, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 374
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 75/98 (76%), Gaps = 2/98 (2%)
Query: 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTES 60
MRNRR + RRGP++V ++G T+AFRNI G++L +V+ LNLL LAPGGHVGRF+IWT+S
Sbjct: 195 MRNRRYVARRGPMLVMPDNKG-TRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIWTKS 253
Query: 61 AFKKLDALYGSWKTKAPLKKGYSLPQPKMANTK-QRVM 97
AF+KLD ++G++ + +K G+ LP P + +T R+M
Sbjct: 254 AFEKLDKIFGTFTEPSTVKSGFMLPAPMLTSTDVTRIM 291
>pdb|3JYW|D Chain D, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 257
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 2 RNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESA 61
RNRR QRRGPLVVY +D G+ KA RN+PGVE +V+ LNLL+LAPG H+GRFVIWTE+A
Sbjct: 191 RNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAA 250
Query: 62 FKKLD 66
F KLD
Sbjct: 251 FTKLD 255
>pdb|3J21|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 255
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTES 60
MR RR + +GPL+V GK+ G+ RN PGV+++ V L + LAPG H GR +WT S
Sbjct: 186 MRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVS 245
Query: 61 AFKKLDALYG 70
A ++L LYG
Sbjct: 246 AIERLRELYG 255
>pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|C Chain C, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|C Chain C, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|C Chain C, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|C Chain C, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|C Chain C, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|C Chain C, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|C Chain C, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|C Chain C, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|C Chain C, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|C Chain C, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|C Chain C, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 246
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 23 TKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKL 65
+ A RN+ G ++ + S++N LAPGG GR ++TESA ++
Sbjct: 201 STAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|C Chain C, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|E Chain E, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|E Chain E, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|E Chain E, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|E Chain E, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|E Chain E, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|E Chain E, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|E Chain E, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|E Chain E, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|E Chain E, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|E Chain E, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|E Chain E, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|E Chain E, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|C Chain C, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|C Chain C, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|C Chain C, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|C Chain C, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|C Chain C, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|C Chain C, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|C Chain C, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|C Chain C, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|C Chain C, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|C Chain C, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|C Chain C, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|C Chain C, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|C Chain C, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|C Chain C, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|C Chain C, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|C Chain C, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|C Chain C, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|C Chain C, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|C Chain C, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|C Chain C, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|C Chain C, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|C Chain C, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|C Chain C, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|C Chain C, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|C Chain C, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|C Chain C, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|C Chain C, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|C Chain C, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3OW2|C Chain C, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 246
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 23 TKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKL 65
+ A RN+ G ++ + S++N LAPGG GR ++TESA ++
Sbjct: 201 STAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|FF Chain f, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 246
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 23 TKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKL 65
+ A RN+ G ++ + S++N LAPGG GR ++TESA ++
Sbjct: 201 STAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>pdb|3FSX|A Chain A, Structure Of Tetrahydrodipicolinate N-Succinyltransferase
(Rv1201c; Dapd) From Mycobacterium Tuberculosis
pdb|3FSX|B Chain B, Structure Of Tetrahydrodipicolinate N-Succinyltransferase
(Rv1201c; Dapd) From Mycobacterium Tuberculosis
pdb|3FSX|C Chain C, Structure Of Tetrahydrodipicolinate N-Succinyltransferase
(Rv1201c; Dapd) From Mycobacterium Tuberculosis
pdb|3FSX|D Chain D, Structure Of Tetrahydrodipicolinate N-Succinyltransferase
(Rv1201c; Dapd) From Mycobacterium Tuberculosis
pdb|3FSX|E Chain E, Structure Of Tetrahydrodipicolinate N-Succinyltransferase
(Rv1201c; Dapd) From Mycobacterium Tuberculosis
pdb|3FSY|A Chain A, Structure Of Tetrahydrodipicolinate N-succinyltransferase
(rv1201c;dapd) In Complex With Succinyl-coa From
Mycobacterium Tuberculosis
pdb|3FSY|B Chain B, Structure Of Tetrahydrodipicolinate N-succinyltransferase
(rv1201c;dapd) In Complex With Succinyl-coa From
Mycobacterium Tuberculosis
pdb|3FSY|C Chain C, Structure Of Tetrahydrodipicolinate N-succinyltransferase
(rv1201c;dapd) In Complex With Succinyl-coa From
Mycobacterium Tuberculosis
pdb|3FSY|D Chain D, Structure Of Tetrahydrodipicolinate N-succinyltransferase
(rv1201c;dapd) In Complex With Succinyl-coa From
Mycobacterium Tuberculosis
pdb|3FSY|E Chain E, Structure Of Tetrahydrodipicolinate N-succinyltransferase
(rv1201c;dapd) In Complex With Succinyl-coa From
Mycobacterium Tuberculosis
Length = 332
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 4 RRRIQRRGPLVVYGKDRGLTKAFRNIP-GVELISVSKLNL-LKLAPGGHV 51
R R++RRGP+ VYG D+ +P GV + ++ L LAPG V
Sbjct: 133 RARLRRRGPVTVYGVDKFPRMVDYVVPTGVRIADADRVRLGAHLAPGTTV 182
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 51 VGRFVIWTESAFKKLD----ALYGSWKTKA 76
+GRFV W +A K++D GSW KA
Sbjct: 201 IGRFVNWQAAAIKEVDPGAMVTVGSWNMKA 230
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 7 IQRRG-PLVVYGKDRGLTKAFRNIPGVELISVSKLN-------LLKLAPGGHVGRFVI 56
+Q +G L+V+G+D G +A + PGV L+S +++ L++ P G F I
Sbjct: 18 MQHKGLQLMVHGRDIGRMEAALDYPGVRLVSTTRVPNANYLFVDLEIGPEAQPGSFDI 75
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 235 IDGEELVKIGKLNLVDLAGSENIGR 259
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 241 IDGEELVKIGKLNLVDLAGSENIGR 265
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 249 IDGEELVKIGKLNLVDLAGSENIGR 273
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGR 274
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGR 274
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGR 274
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 7 IQRRG-PLVVYGKDRGLTKAFRNIPGVELIS---VSKLNL----LKLAPGGHVGRFVI 56
+Q +G L+V+G+D G +A + PGV L+S V N L++ P G F I
Sbjct: 18 MQHKGLQLMVHGRDIGRMEAALDYPGVRLVSPTRVPNANYLFVDLEIGPEAQPGSFDI 75
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 7 IQRRG-PLVVYGKDRGLTKAFRNIPGVELIS---VSKLNL----LKLAPGGHVGRFVI 56
+Q +G L+V+G+D G +A + PGV L+S V N L++ P G F I
Sbjct: 18 MQHKGLQLMVHGRDIGRMEAALDYPGVRLVSPTRVPNANYLFVDLEIGPEAQPGSFDI 75
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGR 274
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 252 IDGEELVKIGKLNLVDLAGSENIGR 276
>pdb|3U55|A Chain A, Crystal Structure (Type-2) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 70 GSWKTKAPLKKGYSLPQP 87
GS K + PL +GY LP+P
Sbjct: 98 GSLKKRLPLPEGYELPEP 115
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 29 IPGVELISVSKLNLLKLAPGGHVGR 53
I G EL+ + KLNL+ LA ++GR
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGR 274
>pdb|3U54|A Chain A, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
pdb|3U54|B Chain B, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 70 GSWKTKAPLKKGYSLPQP 87
GS K + PL +GY LP+P
Sbjct: 98 GSLKKRLPLPEGYELPEP 115
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 39 KLNLLKLAPGGHVGRFVIWTESAFKKLDALYGS 71
+LN +K +PG + + +S FKKLD+ S
Sbjct: 195 ELNFVKTSPGYELTSTTLNKDSTFKKLDSFLHS 227
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92:
From Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92:
From Dna Sequence To Protein Structure
Length = 601
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 LVVYGKDRGLTKAFRNIPGVELISVSKL 40
L V+G+D G +A + PGV L+S +++
Sbjct: 25 LXVHGRDIGRXEAALDYPGVRLVSTTRV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,630
Number of Sequences: 62578
Number of extensions: 101614
Number of successful extensions: 272
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 31
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)