Query psy14782
Match_columns 97
No_of_seqs 104 out of 877
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_C RPL4, ribosomal protein 99.9 1.2E-25 4.1E-30 182.4 8.6 93 1-93 201-294 (410)
2 3iz5_D 60S ribosomal protein L 99.9 6.9E-26 2.4E-30 183.7 1.6 93 1-93 200-293 (405)
3 2zkr_c 60S ribosomal protein L 99.9 3.4E-25 1.2E-29 180.2 3.8 93 1-93 196-288 (421)
4 2wwb_H 60S ribosomal protein L 99.9 1.1E-24 3.8E-29 174.6 4.3 92 1-93 194-285 (362)
5 3j21_D 50S ribosomal protein L 99.8 4.9E-21 1.7E-25 147.5 4.3 70 1-70 186-255 (255)
6 1vq8_C 50S ribosomal protein L 99.8 2.4E-19 8.1E-24 137.5 3.4 66 1-68 181-246 (246)
7 3r8s_E 50S ribosomal protein L 99.6 6E-16 2.1E-20 115.4 5.3 57 10-70 144-201 (201)
8 3v2d_F 50S ribosomal protein L 99.6 1.2E-15 4.1E-20 114.4 4.9 58 9-71 151-208 (210)
9 2ftc_D Mitochondrial ribosomal 99.6 2.6E-15 9E-20 109.8 4.7 55 9-67 117-175 (175)
10 1dmg_A Ribosomal protein L4; a 99.5 1.2E-14 3.9E-19 110.0 5.9 57 10-70 150-225 (225)
11 3bbo_G Ribosomal protein L4; l 99.5 6.3E-15 2.1E-19 115.5 1.9 58 10-71 203-261 (293)
12 2zjr_C 50S ribosomal protein L 99.5 2E-15 6.7E-20 112.7 -1.9 57 10-71 146-202 (205)
13 1eik_A RNA polymerase subunit 30.8 94 0.0032 19.4 4.5 28 52-87 12-39 (77)
14 3iz5_X 60S ribosomal protein L 22.7 34 0.0011 24.2 1.4 26 36-67 63-88 (152)
15 3u5e_X 60S ribosomal protein L 21.3 31 0.0011 24.1 1.0 26 36-67 53-78 (142)
No 1
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=99.92 E-value=1.2e-25 Score=182.43 Aligned_cols=93 Identities=60% Similarity=1.079 Sum_probs=88.6
Q ss_pred CCCcccccCCccEEEEeC-CchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcccccccCcc
Q psy14782 1 MRNRRRIQRRGPLVVYGK-DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGSWKTKAPLK 79 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e-~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~~~~~~~~~ 79 (97)
||||||++.+++|||+++ ++++++|+||||+|+++++++||+|||++++++++.+|||++|++.|+++|+.|......|
T Consensus 201 mRgRry~~~k~~LIV~~~~d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~~~gR~vV~TksAl~~Lee~~~~~~~~s~~k 280 (410)
T 4a17_C 201 LRNRRYKLRRGPLVVYGNEKSTLTRALRNIPGVDVCNVNRLNLLQLAPGGHVGRFIIWTESAFKKLNEIFGTYSTTGVQK 280 (410)
T ss_dssp GGTCCEEECCCCEEEECCTTCSHHHHHTTSTTCEEEETTSCCHHHHSGGGCCCCCEEECHHHHHHHHHHHCBTTBCCTTT
T ss_pred cccccccCCCceEEEECCCchHHHHHHhCCCCcEEEEeCCccHHHHhCCCCCCceEEEEHHHHHHHHHHHccccchhhhc
Confidence 799999999999999966 5799999999999999999999999999999888999999999999999999988888899
Q ss_pred CCCCCCCCccccCC
Q psy14782 80 KGYSLPQPKMANTK 93 (97)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (97)
++|+||+++|+|+-
T Consensus 281 ~~~~lp~~~~~n~d 294 (410)
T 4a17_C 281 SGYQLQRPLLANAD 294 (410)
T ss_dssp TSCCCCCCSCSCCC
T ss_pred cCCcCCcccccccc
Confidence 99999999999974
No 2
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=99.91 E-value=6.9e-26 Score=183.71 Aligned_cols=93 Identities=62% Similarity=1.141 Sum_probs=66.1
Q ss_pred CCCcccccCCccEEEEeC-CchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcccccccCcc
Q psy14782 1 MRNRRRIQRRGPLVVYGK-DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGSWKTKAPLK 79 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e-~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~~~~~~~~~ 79 (97)
||||||++.+++|||+++ ++++++|+||||+|+++++++||+|||++++++++.+|||++|++.|+++|+.|......|
T Consensus 200 mRgRry~~~k~~LIV~~~~d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~~~gr~vV~T~sAl~~Lee~~~~~~~~s~~k 279 (405)
T 3iz5_D 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKK 279 (405)
T ss_dssp GTTCSEECCCCCEEEECCTTTCCCHHHHTSTTCEEEEGGGCCHHHHSGGGCCCCCEEEEHHHHTTSTTCC----------
T ss_pred cccccccccCceEEEECCCchHHHHHHhCCCCcEEEecCCccHHHHhcCCCCCceEEEEHHHHHHHHHHHccccchhhhc
Confidence 799999999999999966 5799999999999999999999999999999778899999999999999999988888899
Q ss_pred CCCCCCCCccccCC
Q psy14782 80 KGYSLPQPKMANTK 93 (97)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (97)
++|+||+|+|+|+-
T Consensus 280 ~~~~lp~~~~~n~d 293 (405)
T 3iz5_D 280 KGFILPRPKMANAD 293 (405)
T ss_dssp --------------
T ss_pred cCCcCCcccccchh
Confidence 99999999999974
No 3
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.90 E-value=3.4e-25 Score=180.24 Aligned_cols=93 Identities=68% Similarity=1.202 Sum_probs=66.6
Q ss_pred CCCcccccCCccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcccccccCccC
Q psy14782 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGSWKTKAPLKK 80 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~~~~~~~~~~ 80 (97)
||||||++.+++|||+++++++++|+||||+|+++++++||+|||++++++|+.+|||++|++.|+++|+.|.....+|+
T Consensus 196 mRgRry~~~kg~LiV~~~d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~h~GR~vV~T~sAle~Lee~~~t~~~~s~~k~ 275 (421)
T 2zkr_c 196 MRNRRRIQRRGPCIIYNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKS 275 (421)
T ss_dssp TTTCCEECCCCCEEEESSSSCCCHHHHTSTTCEEEEGGGCCHHHHSGGGCCCCCEEEEHHHHHHHTTC------------
T ss_pred ccccccccCcceEEEECCChhHHHHHhCCCCcEEEeeCCccHHHHhcCCCCCcEEEEEhHHHHHHHHHHhcccccccccc
Confidence 89999999999999998888999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCccccCC
Q psy14782 81 GYSLPQPKMANTK 93 (97)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (97)
+|.||+++|.|+-
T Consensus 276 ~~~lp~~~~~n~d 288 (421)
T 2zkr_c 276 NYNLPMHKMLNTD 288 (421)
T ss_dssp -------------
T ss_pred CCcCCccccchhH
Confidence 9999999999874
No 4
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=99.90 E-value=1.1e-24 Score=174.64 Aligned_cols=92 Identities=60% Similarity=1.029 Sum_probs=72.1
Q ss_pred CCCcccccCCccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcccccccCccC
Q psy14782 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGSWKTKAPLKK 80 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~~~~~~~~~~ 80 (97)
||||||++.+++|||+++++++++|+||||+|+++++++||+|||++++++++.+|||++|+++|+++|+. ......|+
T Consensus 194 mRgRry~~~k~~LiV~~~d~~l~~A~RNipgV~v~~v~~LNv~dLl~~~~~gr~vV~T~sAl~~Le~~~~~-~~~s~~k~ 272 (362)
T 2wwb_H 194 YRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVASSKV 272 (362)
T ss_dssp TTSCCSCCCCCCEEEESSSCCCCTTTSCSSSCEEEESSSCCHHHHSTTSCCCCCEECCTTHHHHHHCCSSC-CCCCC---
T ss_pred ccccccccCCceEEEEcCChhHHHHHhcCCCCcEEeeCCccHHHHhcccCcCCEEEEEHHHHHHHHHHHcc-CCcchhcc
Confidence 89999999999999998778999999999999999999999999999998899999999999999999988 66667899
Q ss_pred CCCCCCCccccCC
Q psy14782 81 GYSLPQPKMANTK 93 (97)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (97)
+|.||+++|.|+-
T Consensus 273 ~~~lp~~~m~n~d 285 (362)
T 2wwb_H 273 GYTLPSHIISTSD 285 (362)
T ss_dssp -------------
T ss_pred cCcCCccccchhH
Confidence 9999999999974
No 5
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=4.9e-21 Score=147.52 Aligned_cols=70 Identities=47% Similarity=0.884 Sum_probs=66.3
Q ss_pred CCCcccccCCccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhc
Q psy14782 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYG 70 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~ 70 (97)
||||||++.+++|||+++++++++|+||||+|+++++++||+|||++++++++.+|||++|++.|+++|+
T Consensus 186 ~r~rr~~~~~~~LiV~~~~~~~~~a~RNip~V~v~~~~~LNv~~Ll~~~~~gr~~V~T~~A~~~lee~~g 255 (255)
T 3j21_D 186 MRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLRELYG 255 (255)
T ss_dssp GGSCCSCCCCCCEEEESSSSSSCSSSSSSTTCEEEETTTCCHHHHSTTSCCCCCEEEEHHHHHHHHSCCC
T ss_pred cccccccCCCceEEEECCCcHHHHHHhCCCCcEEEecCCccHHHHhCCCCCCceEEEEHHHHHHHHHHhC
Confidence 7999999999999999886559999999999999999999999999999888899999999999999874
No 6
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=99.75 E-value=2.4e-19 Score=137.49 Aligned_cols=66 Identities=32% Similarity=0.508 Sum_probs=62.5
Q ss_pred CCCcccccCCccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHH
Q psy14782 1 MRNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDAL 68 (97)
Q Consensus 1 ~~~~~~~~~~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~ 68 (97)
||||||++.+++|||++++ +++|+||||+|+++++++||+|||++++++|+.+|||++|+++|+++
T Consensus 181 ~r~rr~~~~~~~LiV~~~~--~~~a~RNip~V~v~~~~~lnv~dll~~~~~gr~~v~T~~Al~~l~e~ 246 (246)
T 1vq8_C 181 ARGRKYRRPASILFVTSDE--PSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER 246 (246)
T ss_dssp GGTCCEECCCCCEEEESSS--CCTTTTTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHHHHHGGGC
T ss_pred ccccccccCCcEEEEECcH--HHHHHcCCCCcEEEeeCCeeHHHHhccCCCCCeEEEEHHHHHHHhhC
Confidence 7999999999999999855 99999999999999999999999999998889999999999999873
No 7
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=99.60 E-value=6e-16 Score=115.45 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=53.2
Q ss_pred CccEEEEeC-CchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhc
Q psy14782 10 RGPLVVYGK-DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYG 70 (97)
Q Consensus 10 ~k~LIV~~e-~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~ 70 (97)
+++|||+++ ++++++|+||||+|+++++++||+||||+++ .+|||++|+++||++|+
T Consensus 144 ~~~LiV~~~~~~~~~~a~RNip~v~v~~~~~lnv~dll~~~----~~v~t~~Al~~lee~l~ 201 (201)
T 3r8s_E 144 EDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFD----KVVMTADAVKQVEEMLA 201 (201)
T ss_dssp SSEEEEESSCCHHHHHTTSSCSSEEEEEGGGCCHHHHHHSS----EEEECHHHHHHHHHHHC
T ss_pred CceEEEECCCchHHHHHHhCCCCceEEeeCCCcHHHHhCCC----CEEEEHHHHHHHHHHhC
Confidence 578999987 5699999999999999999999999999986 79999999999999985
No 8
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=99.58 E-value=1.2e-15 Score=114.43 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcc
Q psy14782 9 RRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGS 71 (97)
Q Consensus 9 ~~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~ 71 (97)
.+++|||++ ++++++|+||||+|+++++++||+||||+++ .+|||++|+++|+++|+.
T Consensus 151 ~~~~LiV~~-~~~~~~a~RNip~v~v~~~~~lnv~dll~~~----~vv~t~~Al~~l~e~~~~ 208 (210)
T 3v2d_F 151 SESVLLVTG-NELVRRAARNLPWVVTLAPEGLNVYDIVRTE----RLVMDLDAWEVFQNRIGG 208 (210)
T ss_dssp SSCEEEECS-CHHHHHHHTTCTTEEEECGGGCCHHHHHHSS----EEEEEHHHHHHHHHHHC-
T ss_pred CCceEEEeC-ChhHHHHHhCcCCceEEeeCCccHHHHhCCC----CEEEEHHHHHHHHHHhcc
Confidence 468999998 7899999999999999999999999999986 799999999999999973
No 9
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=99.55 E-value=2.6e-15 Score=109.81 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=50.5
Q ss_pred CCccEEEEeC----CchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHH
Q psy14782 9 RRGPLVVYGK----DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDA 67 (97)
Q Consensus 9 ~~k~LIV~~e----~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee 67 (97)
++++|||+++ ++++++|+||||+|+++++++||+||||+++ .||||++|+++|||
T Consensus 117 ~~~~LiV~~~~~~~~~~~~~a~RNip~v~v~~~~~lnv~dll~~~----~lv~t~~Al~~lee 175 (175)
T 2ftc_D 117 GDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQ----TLVLTLPTVAFLED 175 (175)
T ss_pred CCceEEEECCCccCCHHHHHHHhCCCCcEEEeeCCEeHHHHhCCC----CEEEEHHHHHHHhC
Confidence 3579999976 5699999999999999999999999999997 69999999999985
No 10
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=99.52 E-value=1.2e-14 Score=110.00 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=53.1
Q ss_pred CccEEEEeC-Cc---hHHHhhcCCCCceEEeeCC---------------CccccccCCCCCCceEEEcHHHHHHHHHHhc
Q psy14782 10 RGPLVVYGK-DR---GLTKAFRNIPGVELISVSK---------------LNLLKLAPGGHVGRFVIWTESAFKKLDALYG 70 (97)
Q Consensus 10 ~k~LIV~~e-~~---nl~lSaRNLp~V~v~~a~~---------------LNvyDLL~~d~~~~~VI~TesAl~~lee~l~ 70 (97)
+++|||+++ ++ ++++|+||||+|+++++++ ||+||||+++ .||||++|+++||++|+
T Consensus 150 ~~~LiV~~~~~~~~~n~~~a~RNip~v~v~~~~~~~~~~~~~~~~~~~~lNv~dll~~~----~lv~t~~Al~~lee~l~ 225 (225)
T 1dmg_A 150 KKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYD----YLVLTRDMVSKIEEVLG 225 (225)
T ss_dssp SCEEEEECCCSHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSS----EEEEEHHHHHHHHHHHC
T ss_pred CCEEEEECCCccchHHHHHHHhCCCCCEEEecCCcccccccccccCcCcEEHHHHhCCC----cEEEeHHHHHHHHHHhC
Confidence 679999977 47 9999999999999999999 9999999996 89999999999999984
No 11
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.48 E-value=6.3e-15 Score=115.48 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=53.7
Q ss_pred CccEEEEeC-CchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcc
Q psy14782 10 RGPLVVYGK-DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGS 71 (97)
Q Consensus 10 ~k~LIV~~e-~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~ 71 (97)
+++|||+++ ++++++|+||||+|+++++++||+||||+++ .||||++|+++|+++|+.
T Consensus 203 ~k~LlV~~~~d~nl~~A~RNIp~V~v~~v~~LNvydLl~~~----~lViT~~Al~~Lee~l~~ 261 (293)
T 3bbo_G 203 EKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAE----KLVFTEGTIQYLNQRYGV 261 (293)
T ss_dssp SSSCCEECCCSSSCCTTTSSSSSCEECCSSCCCHHHHHHSS----CEECCTTHHHHHHHHSCC
T ss_pred CceEEEEcCCChhHHHHHhCCCCcEEEeeCceeHHHhhCCC----cEEEEHHHHHHHHHHhcc
Confidence 568888866 5799999999999999999999999999996 799999999999999984
No 12
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=99.46 E-value=2e-15 Score=112.70 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=50.4
Q ss_pred CccEEEEeCCchHHHhhcCCCCceEEeeCCCccccccCCCCCCceEEEcHHHHHHHHHHhcc
Q psy14782 10 RGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYGS 71 (97)
Q Consensus 10 ~k~LIV~~e~~nl~lSaRNLp~V~v~~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee~l~~ 71 (97)
+++|||+ +++++++|+||||+|+++++++||+||||+++ .+|||++|+++|+++|+.
T Consensus 146 ~~~LiV~-~~~~~~~a~RNip~v~v~~~~~lnv~dll~~~----~~v~t~~Al~~lee~~~~ 202 (205)
T 2zjr_C 146 EKVLLVT-DDENTRRAARNVSWVSVLPVAGVNVYDILRHD----RLVIDAAALEIVEEEAGE 202 (205)
T ss_dssp SCEEEEC-CCHHHHTSCCCSSSEEEEGGGCCCHHHHHHSS----EEECBCTTTSSCCC----
T ss_pred CCEEEEE-cCccHHHHHhCCCCceEEeeCceeHHHHhCCC----cEEEEHHHHHHHHHHHhh
Confidence 6799999 77899999999999999999999999999987 799999999999999864
No 13
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=30.76 E-value=94 Score=19.44 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.4
Q ss_pred CceEEEcHHHHHHHHHHhcccccccCccCCCCCCCC
Q psy14782 52 GRFVIWTESAFKKLDALYGSWKTKAPLKKGYSLPQP 87 (97)
Q Consensus 52 ~~~VI~TesAl~~lee~l~~~~~~~~~~~~~~~~~~ 87 (97)
+...++|++-.+.|-+.++- +..|||+=
T Consensus 12 PkH~iLs~eEk~~lL~~y~i--------~~~qLP~I 39 (77)
T 1eik_A 12 PEHVILNESEAKRVLKELDA--------HPEQLPKI 39 (77)
T ss_dssp CEEEEECHHHHHHHHHHTTC--------CTTTSCCC
T ss_pred CCEEEcCHHHHHHHHHHcCC--------CHHHCCee
Confidence 34799999999999999997 67788863
No 14
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.68 E-value=34 Score=24.20 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.1
Q ss_pred eeCCCccccccCCCCCCceEEEcHHHHHHHHH
Q psy14782 36 SVSKLNLLKLAPGGHVGRFVIWTESAFKKLDA 67 (97)
Q Consensus 36 ~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee 67 (97)
.-+.++.||++.+ -++||.|...+|+
T Consensus 63 ~~~kmd~~~IIk~------PliTEKa~~~~E~ 88 (152)
T 3iz5_X 63 GRNKLDQYQILKY------PLTTESAMKKIED 88 (152)
T ss_dssp CCCCCCCCCSEEE------ECCSHHHHHHHHH
T ss_pred CCCcCcHHHHHhh------CCcCHHHHHHHHh
Confidence 3468899999975 7899999999986
No 15
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.35 E-value=31 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.1
Q ss_pred eeCCCccccccCCCCCCceEEEcHHHHHHHHH
Q psy14782 36 SVSKLNLLKLAPGGHVGRFVIWTESAFKKLDA 67 (97)
Q Consensus 36 ~a~~LNvyDLL~~d~~~~~VI~TesAl~~lee 67 (97)
.-+.++.||++.+ -++||.|...+|+
T Consensus 53 ~~~kld~~~IIk~------PliTEKa~~~~E~ 78 (142)
T 3u5e_X 53 HYNRLDSYKVIEQ------PITSETAMKKVED 78 (142)
T ss_dssp CCCTTCHHHHEEE------ECCCHHHHHHHHH
T ss_pred CCCCCCHHHhhhc------CCcCHHHHHHHHh
Confidence 3467899999985 7899999999986
Done!