RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14782
         (97 letters)



>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 246

 Score = 71.3 bits (174), Expect = 3e-17
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 2   RNRRRIQRRGPLVVYGKDRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESA 61
             R R  RR   +++      + A RN+ G ++ + S++N   LAPGG  GR  ++TESA
Sbjct: 180 SARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESA 239

Query: 62  FKKLD 66
             ++ 
Sbjct: 240 LAEVA 244


>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 225

 Score = 37.9 bits (87), Expect = 4e-05
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 11/63 (17%)

Query: 19  DRGLTKAFRNIPGVELISVSKLNLLKLAPGGHVGRF-----------VIWTESAFKKLDA 67
              +  + RN+P V++I     N  K                     ++ T     K++ 
Sbjct: 163 YMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEE 222

Query: 68  LYG 70
           + G
Sbjct: 223 VLG 225


>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 208

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 22  LTKAFRNIPGVELISVSKLNLLKLAPGGHVGRFVIWTESAFKKLDALYG 70
           + +A RN+P V  ++   LN+  +         ++    A++      G
Sbjct: 163 VRRAARNLPWVVTLAPEGLNVYDIVRTER----LVMDLDAWEVFQNRIG 207


>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
           [TaxId: 562]}
          Length = 198

 Score = 30.8 bits (69), Expect = 0.016
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 10/51 (19%)

Query: 18  KDRGLTKAFRNIPGVELISVSKLN---LLKLAPGGHVGRFVIWTESAFKKL 65
            D  L  A RN+  V++   + ++   L+           V+ T  A K++
Sbjct: 153 LDENLFLAARNLHKVDVRDATGIDPVSLIAF-------DKVVMTADAVKQV 196


>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
          protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
          Length = 175

 Score = 24.3 bits (52), Expect = 2.8
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 2  RNRRRIQRRG--PLVVYGKDRGLT-----KAFRNIPGVELISVSKLNLLKLAPGGHVGRF 54
          R  ++         V Y K+  ++     KAF         S + L  + +  G      
Sbjct: 8  RTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRA--FRQQSTTGLFDITVEGGETFPAL 65

Query: 55 VIWTESAFKKLDALYGSWKTKAPLKK 80
          V   +   +K   ++  +      + 
Sbjct: 66 VKAVQMDKRKRAPIHVDFYMVTYGEP 91


>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 97

 Score = 22.5 bits (48), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 26 FRNIPGVELISVSKLNLLKLAPGG 49
          F+NI G EL  ++K +  +L P  
Sbjct: 56 FQNIDGKELCKMTKDDFQRLTPSY 79


>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain
          {Flavobacterium sp. 92 [TaxId: 197856]}
          Length = 93

 Score = 22.4 bits (48), Expect = 10.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 13 LVVYGKDRGLTKAFRNIPGVELISVSKL 40
          L+V+G+D G  +A  + PGV L+S +++
Sbjct: 23 LMVHGRDIGRMEAALDYPGVRLVSTTRV 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,514
Number of extensions: 14209
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 10
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)