BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14785
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2
SV=2
Length = 401
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
MANTDL+RLLKSEEI+KVLR P + V R+ R+LNPLTN R +++LNP+A+V R A ++
Sbjct: 287 MANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAA 346
Query: 62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEK 98
EKR +A+ A+K+ V V A + K
Sbjct: 347 EKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAK 383
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1
Length = 386
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+RLLKS+EI+ LR P + R +K NPL N R+M+RLNPFA +A E
Sbjct: 283 MTNTDLSRLLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPFAGAQKAAAKAVE 342
Query: 62 EKRKLAREAKLAEKRGVST 80
++R ++AKL +KRG++T
Sbjct: 343 QRRLKEKQAKLDQKRGIAT 361
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2
Length = 396
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL R+LKS+EI++ LR P + V+R K NPL N R+M+RLNP+A+ R AI+ +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347
Query: 62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREA 105
+ A+E K + G K L + +++ K++ AREA
Sbjct: 348 LENIKAKEKKPDD--GKPKAKKPLDAKTKMIKLAKAKKRQAREA 389
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis GN=rpl4-b PE=2 SV=2
Length = 401
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL R+LKS+EI++ LR P + V+R K NPL N R+M+RLNP+A+ R AI+ +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347
Query: 62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAR-EAKLAE 109
+ A+E K + G K L + +++ K++ AR EAK AE
Sbjct: 348 LENIKAKEKKPDD--GKPKAKKPLDAKTKMIKLAKAKKRQARAEAKTAE 394
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3
Length = 422
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKL 107
+ R K A + K + G + ++ +++K + KL
Sbjct: 344 ARNHKIRMDKAAAALEAKSDQKGVQG--KKPVVGNKEKKAVGDKKL 387
>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3
Length = 421
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EK 63
+
Sbjct: 344 AR 345
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3
Length = 419
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EK 63
+
Sbjct: 344 AR 345
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5
Length = 427
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EK 63
+
Sbjct: 344 AR 345
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1
Length = 427
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EK 63
+
Sbjct: 344 AR 345
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1
Length = 427
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LKS EI++ LR P + + R K NPL N R+ML+LNP+A+ T+R I
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAK-TMRWNTILR 342
Query: 62 EKR 64
+ R
Sbjct: 343 QAR 345
>sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2
SV=1
Length = 406
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M N DLAR++ S+EI+ V+ + +RA K NPL N +ML+LNP+A+ R ++++E
Sbjct: 290 MVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAE 349
Query: 62 EKR 64
+R
Sbjct: 350 AQR 352
>sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1
SV=2
Length = 407
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIR-GVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIIS 60
M N DLAR++ S+E++ V+ PI+ G +RA K NPL N +M +LNP+A+ R ++++
Sbjct: 291 MVNADLARIINSDEVQSVV-NPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLA 349
Query: 61 EEKR 64
E R
Sbjct: 350 EASR 353
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2
Length = 421
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M NTDL+R+LK + LR P + + R K NPL N R+ML+LNP+A+ R+ I+ +
Sbjct: 284 MLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62 EKRKLAREAKLA 73
K R K A
Sbjct: 344 AKNHKLRMDKAA 355
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1
Length = 408
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M N DLAR++ S+E++ V+ G +RA K NPL ML+LNP+A+ R ++++E
Sbjct: 292 MVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAE 351
Query: 62 EKR 64
+R
Sbjct: 352 AER 354
>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1
SV=1
Length = 369
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 11/67 (16%)
Query: 1 MMANTDLARLLKSEEI-------KKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVT 53
M+AN D+ RL+ S+EI K V++RP VRR+ NPL N R M++LNP A T
Sbjct: 282 MIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRS----NPLKNLRAMIKLNPAAVST 337
Query: 54 IRSAIIS 60
R+ + S
Sbjct: 338 RRTQVKS 344
>sp|P0DJ55|RL4_TETTS 60S ribosomal protein L4 OS=Tetrahymena thermophila (strain SB210)
GN=RPL4 PE=1 SV=1
Length = 410
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRA-SRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
++AN D+AR++ S E++ V++ + G RK NPLTN + +LNP A++ A
Sbjct: 289 LLANADIARIINSNEVQSVVK--VAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKK 346
Query: 60 SEEKRKLAREAKLAEKRGVSTTSK 83
+ E K R+A L R + T K
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHK 370
>sp|Q9P784|RL4B_SCHPO 60S ribosomal protein L4-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4b PE=3 SV=1
Length = 363
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 1 MMANTDLARLLKSEEIKKVLRR--PIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAI 58
+++N D+ RL+ S+EI+ +++ P R R +K NPL NK ++ RLNP+A+ +
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYKANVK 342
Query: 59 ISEEK 63
I+ EK
Sbjct: 343 INSEK 347
>sp|P35679|RL4A_SCHPO 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4a PE=1 SV=2
Length = 363
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 1 MMANTDLARLLKSEEIKKVLRR--PIRGVRRASRKLNPLTNKRMMLRLNPFAQ 51
+++N D+ RL+ S+EI+ +++ P R R +K NPL NK ++ RLNP+A+
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAK 335
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1
SV=3
Length = 345
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQV 52
+MAN+D +R+++SEE+ K +R P + NPL + ++ +LNP+A +
Sbjct: 283 IMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASI 334
>sp|P49626|RL4B_YEAST 60S ribosomal protein L4-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4B PE=1 SV=2
Length = 362
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKL--NPLTNKRMMLRLNPFAQV 52
+++ +D+ R++ S EI+ +R + ++ + L NPL NK+++LRLNP+A+V
Sbjct: 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 333
>sp|P10664|RL4A_YEAST 60S ribosomal protein L4-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4A PE=1 SV=4
Length = 362
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKL--NPLTNKRMMLRLNPFAQV 52
+++ +D+ R++ S EI+ +R + ++ + L NPL NK+++LRLNP+A+V
Sbjct: 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 333
>sp|P14117|RL4_XENTR 60S ribosomal protein L4 (Fragment) OS=Xenopus tropicalis GN=rpl4
PE=3 SV=1
Length = 96
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTN 39
M NTDL R+LKS+EI++ LR P + V+R K NPL N
Sbjct: 58 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKN 95
>sp|Q59199|G3P_BACFR Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis
(strain YCH46) GN=gap PE=3 SV=2
Length = 333
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 26 GVRRASRKLNPLTNKR---MMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTS 82
G +A K+ P+ N + M R+ P + V++ + EK E A K
Sbjct: 211 GAAKAVGKVLPVLNGKLTGMAFRV-PTSDVSVVDLTVVLEKAATMAEINAAMKEASEGEL 269
Query: 83 KSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTR 136
K +LG A++S + R A + K G+S S + V ++Y + + Y+
Sbjct: 270 KGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVV--SWYDNEWGYSN 321
>sp|Q3UEI1|PDE4C_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase 4C OS=Mus musculus
GN=Pde4c PE=1 SV=1
Length = 686
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 11 LKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREA 70
+ S + K++L R + + SR N ++ L+ A+V + ++ +A
Sbjct: 234 MASNKFKRMLNRELSYLSETSRSGNQVSEYISQTFLDQQAEVELPQPPTEDDPWPMA--- 290
Query: 71 KLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGV 113
++ E R S TS +PR + ++++ +LA+E + K G+
Sbjct: 291 QITELRRSSHTSLPTAAIPRFGVQTDQEEQLAKELEDTNKWGL 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,435,365
Number of Sequences: 539616
Number of extensions: 2976578
Number of successful extensions: 7959
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7910
Number of HSP's gapped (non-prelim): 62
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)