Query psy14785
Match_columns 211
No_of_seqs 104 out of 203
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 20:47:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14374 Ribos_L4_asso_C: 60S 100.0 2.1E-30 4.6E-35 194.1 -2.9 70 1-70 9-79 (80)
2 PLN00185 60S ribosomal protein 99.9 1E-23 2.2E-28 194.6 6.6 84 1-84 288-371 (405)
3 PTZ00428 60S ribosomal protein 99.9 1.4E-23 3.1E-28 192.3 3.5 78 1-78 282-360 (381)
4 KOG1475|consensus 99.5 4.6E-15 1E-19 135.2 0.5 62 1-62 282-345 (363)
5 PF08368 FAST_2: FAST kinase-l 69.7 3.5 7.5E-05 30.7 2.0 31 179-209 49-79 (93)
6 KOG2313|consensus 42.6 4.9 0.00011 32.3 -1.3 57 136-204 4-60 (100)
7 PF12559 Inhibitor_I10: Serine 40.2 12 0.00025 27.3 0.4 9 159-167 48-56 (56)
8 PF09807 DUF2348: Uncharacteri 29.2 24 0.00052 30.8 0.7 15 122-136 28-42 (249)
9 PF10372 YojJ: Bacterial membr 26.8 20 0.00044 26.9 -0.1 13 122-134 56-68 (70)
10 PF07098 DUF1360: Protein of u 24.6 23 0.00049 28.2 -0.2 20 4-23 6-25 (105)
11 KOG4723|consensus 24.3 29 0.00062 31.7 0.3 14 122-135 29-42 (248)
12 PRK00247 putative inner membra 21.2 82 0.0018 30.5 2.7 14 100-113 377-390 (429)
No 1
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=99.95 E-value=2.1e-30 Score=194.15 Aligned_cols=70 Identities=47% Similarity=0.755 Sum_probs=60.6
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCcc-ccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHH
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRA-SRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREA 70 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkRr-~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~ 70 (211)
+||||||+|||||||||+||||+++.++++ ++|+|||||+++|+||||||+++++++++.++.+..++++
T Consensus 9 ~MtN~Dl~RiInSdEIQsvlr~~~~~~~r~~~~kkNPLkN~~~m~rLNPya~~~kr~~~~~~~~~~~~k~~ 79 (80)
T PF14374_consen 9 KMTNADLSRIINSDEIQSVLRPPKKKPKRRSVQKKNPLKNLRAMLRLNPYAKVAKRAAILAQKKRKKKKAE 79 (80)
T ss_dssp S-S---HHHHHHSHHHHCCCHHHHHCSSCCHHHCCCCCC-HHHCCCHHCHHHHHHHHCHSHHSCHHHHCHS
T ss_pred hhccccHHHHhccHHHHHHHhcccccCcCCCCcCCCCcchHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999887 9999999999999999999999999999999887776654
No 2
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=99.89 E-value=1e-23 Score=194.56 Aligned_cols=84 Identities=39% Similarity=0.597 Sum_probs=77.7
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVST 80 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~~~ 80 (211)
+|||+||+|||||||||+||||++....++++|+|||||+++|+||||||+++++++++.++++..++++..++++....
T Consensus 288 ~m~n~dl~rii~S~eiq~~lr~~~~~~~~~~~kknplkn~~~~~~lnpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (405)
T PLN00185 288 KMVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVS 367 (405)
T ss_pred ccccccHHHHhccHHHHHHHhccCCccccchhhcCchHHHHHHHHhChHHHHHHHHHHHHHHHHHhcchhhHHHHhhhcc
Confidence 69999999999999999999999998889999999999999999999999999999999999999988888888887766
Q ss_pred Cccc
Q psy14785 81 TSKS 84 (211)
Q Consensus 81 ~~kk 84 (211)
++++
T Consensus 368 ~~~~ 371 (405)
T PLN00185 368 KEEA 371 (405)
T ss_pred hhhH
Confidence 6543
No 3
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=99.88 E-value=1.4e-23 Score=192.33 Aligned_cols=78 Identities=37% Similarity=0.595 Sum_probs=70.6
Q ss_pred CCcccchhhhcCcHHHHHHhcCCc-CCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPI-RGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGV 78 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppK-k~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~ 78 (211)
+|||+||+|||||||||+||||++ +...++++|+|||||+++|+||||||+++++++++.++++..++.+..++++..
T Consensus 282 ~m~n~Dl~rii~S~eiq~~l~~~~~~~~~~~~~k~nplkn~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (381)
T PTZ00428 282 LMTNADIARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRAR 360 (381)
T ss_pred ccccccHHHHhccHHHHHHhccccccccccchhhcCCchHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 699999999999999999999996 577889999999999999999999999999999999998888877777765543
No 4
>KOG1475|consensus
Probab=99.49 E-value=4.6e-15 Score=135.23 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=54.4
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCc--cccCCCccchHHHHhhcChHHHHHhHHHHHHHH
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRR--ASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEE 62 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkR--r~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qk 62 (211)
||+|+||+|||+|||||++++++.....+ .+.|||||+|.++|.+||||++.++++..+...
T Consensus 282 i~~n~Dl~rii~Sdevqa~~de~~~v~~k~~~v~kKn~lk~~~v~~rlnPya~k~~aatk~~~~ 345 (363)
T KOG1475|consen 282 IMSNADLSRIINSDELQAKSDEKGKVAGKKPVVGKKNKLKNKGVLKRLNPYAKKKAAATKKPAK 345 (363)
T ss_pred hhhhhHHHHHHHHHHHHhhcccccccccccceeccccchhHHHHHHhhchHhHHHHHhhccCcc
Confidence 69999999999999999999998866644 688999999999999999999998877654443
No 5
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=69.73 E-value=3.5 Score=30.72 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=27.0
Q ss_pred ecccHHHHHHHHhcCccceeeCCCCcccccc
Q psy14785 179 VKNGIGKLLQRALGSETHFRVDPLTPDCLEL 209 (211)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (211)
..+++...|+..||++.+|+.+..||-|..+
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~tp~gy~i 79 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVITPYGYTI 79 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccccCCCceE
Confidence 4567889999999999999999999987543
No 6
>KOG2313|consensus
Probab=42.64 E-value=4.9 Score=32.35 Aligned_cols=57 Identities=32% Similarity=0.492 Sum_probs=34.0
Q ss_pred cCCccCCCCcccCchhhHHhhhhcCCCCcccccccCCCceeeeecccHHHHHHHHhcCccceeeCCCCc
Q psy14785 136 RGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTP 204 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (211)
.-|+.|+|.+-=|.-|+.+++--.+---+|.--|+ |. ++-.| --|+||||||.-.++
T Consensus 4 ~~~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~ha-gH----~~~kg-------~~~~EtHFrv~vVS~ 60 (100)
T KOG2313|consen 4 PSGIYGPRESRIREKLFEALKPLNLELYNESHQHA-GH----AVPKG-------MDGAETHFRVEVVSS 60 (100)
T ss_pred cccccCcHHHHHHHHhHhhcCcceEEEeecccccc-cc----ccccC-------CCCCccEEEEEEech
Confidence 45788888888788888887754433222222211 11 11122 467999999976655
No 7
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=40.21 E-value=12 Score=27.31 Aligned_cols=9 Identities=67% Similarity=0.803 Sum_probs=3.8
Q ss_pred cCCCCcccc
Q psy14785 159 VYPSDSEED 167 (211)
Q Consensus 159 ~~~~~~~~~ 167 (211)
-||||+||+
T Consensus 48 KyPSD~ee~ 56 (56)
T PF12559_consen 48 KYPSDWEEY 56 (56)
T ss_dssp -SS-SS---
T ss_pred eCCCccccC
Confidence 499999985
No 8
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=29.19 E-value=24 Score=30.84 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.9
Q ss_pred ccChhhhhhhhhhhc
Q psy14785 122 GVPATFYLHHYLYTR 136 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (211)
+.|+.|.+||||+..
T Consensus 28 ~~dgsFLlh~~L~~~ 42 (249)
T PF09807_consen 28 ETDGSFLLHHFLSQY 42 (249)
T ss_pred CCCchhHHHHHHHHH
Confidence 789999999998643
No 9
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=26.75 E-value=20 Score=26.90 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.6
Q ss_pred ccChhhhhhhhhh
Q psy14785 122 GVPATFYLHHYLY 134 (211)
Q Consensus 122 ~~~~~~~~~~~~~ 134 (211)
++-|||||+.||.
T Consensus 56 ~~AssyYLq~YLs 68 (70)
T PF10372_consen 56 TLASSYYLQCYLS 68 (70)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc
Confidence 4558999999985
No 10
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=24.60 E-value=23 Score=28.16 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.1
Q ss_pred ccchhhhcCcHHHHHHhcCC
Q psy14785 4 NTDLARLLKSEEIKKVLRRP 23 (211)
Q Consensus 4 NADLsRIINSDEIQSVLRpp 23 (211)
-.=|+|+|+.|.|-+-||.|
T Consensus 6 ~~RlTRLi~~D~It~~lR~p 25 (105)
T PF07098_consen 6 VFRLTRLIVKDKITSPLRAP 25 (105)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 34589999999999999965
No 11
>KOG4723|consensus
Probab=24.28 E-value=29 Score=31.73 Aligned_cols=14 Identities=43% Similarity=0.973 Sum_probs=11.9
Q ss_pred ccChhhhhhhhhhh
Q psy14785 122 GVPATFYLHHYLYT 135 (211)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (211)
-.|.+|.+|||||-
T Consensus 29 eT~gsFl~H~~l~~ 42 (248)
T KOG4723|consen 29 ETPGSFLFHYYLYH 42 (248)
T ss_pred cCCceeeHHHHHHH
Confidence 46899999999984
No 12
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=21.15 E-value=82 Score=30.50 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhCC
Q psy14785 100 KLAREAKLAEKRGV 113 (211)
Q Consensus 100 k~~r~~k~~~~~~~ 113 (211)
+-.|++.-+.+.|.
T Consensus 377 ~~~~~~~~~~~~~~ 390 (429)
T PRK00247 377 RARRAAVKAKKKGL 390 (429)
T ss_pred HHHHHHHhhhhccc
Confidence 33444444444443
Done!