Query psy14785
Match_columns 211
No_of_seqs 104 out of 203
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 20:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_C RPL4, ribosomal protein 99.9 5E-23 1.7E-27 188.9 4.4 85 1-86 289-373 (410)
2 3iz5_D 60S ribosomal protein L 99.9 4.4E-25 1.5E-29 202.0 -12.6 79 1-79 288-366 (405)
3 2wwb_H 60S ribosomal protein L 99.8 7.3E-23 2.5E-27 185.2 0.0 68 1-68 280-349 (362)
4 2zkr_c 60S ribosomal protein L 99.8 1.4E-22 4.9E-27 186.3 0.0 69 1-69 283-351 (421)
5 2vfx_A Mitotic spindle assembl 56.2 5.8 0.0002 32.6 2.3 46 125-191 25-70 (206)
6 4aez_B MAD2, mitotic spindle c 54.5 6.4 0.00022 32.8 2.3 45 126-191 24-68 (203)
7 1v9j_A BOLA-like protein riken 43.3 19 0.00066 27.8 3.3 38 167-204 9-69 (113)
8 3abd_A Mitotic spindle assembl 42.9 12 0.00042 31.2 2.3 46 125-191 39-84 (227)
9 2j23_A Thioredoxin; immune pro 18.8 90 0.0031 21.2 3.0 26 168-195 9-34 (121)
10 1e6y_A Methyl-coenzyme M reduc 18.6 79 0.0027 30.6 3.4 32 94-125 44-77 (569)
No 1
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=99.86 E-value=5e-23 Score=188.87 Aligned_cols=85 Identities=33% Similarity=0.486 Sum_probs=72.8
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVST 80 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~~~ 80 (211)
+|+|+||+|||||||||+||||+ +..+++++|+|||||+++|+||||||++++++++..++....+.+..+.+++++..
T Consensus 289 ~~~n~dl~r~i~s~eiq~~~~~~-~~~~~~~~k~npl~n~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (410)
T 4a17_C 289 LLANADIARIINSNEVQSVVKVA-GTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAK 367 (410)
T ss_dssp SCSCCCHHHHHHSHHHHHHCCCC-CCCCCCCCCCCTTTCHHHHHHHCTHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHhCCHHHHHHhcCc-cccccccccCCCchhHHHHHhcCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Confidence 69999999999999999999988 77778999999999999999999999999999998888777666666666665555
Q ss_pred Cccccc
Q psy14785 81 TSKSLL 86 (211)
Q Consensus 81 ~~kka~ 86 (211)
+.++.+
T Consensus 368 ~~~~~~ 373 (410)
T 4a17_C 368 THKKGS 373 (410)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 544443
No 2
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=99.85 E-value=4.4e-25 Score=202.02 Aligned_cols=79 Identities=35% Similarity=0.548 Sum_probs=59.6
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVS 79 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~~ 79 (211)
+|+|+||+|||||||||+|||||++.++++++|||||||+++|+||||||+++++++++.++++.++++++++++++..
T Consensus 288 ~~~n~dl~r~~~s~eiq~~~~~~~~~~~~~~~kknplkn~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (405)
T 3iz5_D 288 KMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366 (405)
T ss_dssp ---------------CCSCHHHHHHHSSTTHHHHHHHHCCCCSSTHHHHHHHHTCCCCSSCSSHHHHTCSHHHHHHHHH
T ss_pred cccchhHHHHhcCHHHHHHHhcccCCCCCCCcCCCchhhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6999999999999999999999998888999999999999999999999999999999999999999988888877643
No 3
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=99.84 E-value=7.3e-23 Score=185.17 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=0.0
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCc--cccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHH
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRR--ASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAR 68 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkR--r~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kK 68 (211)
+|+|+||+|||||||||+||||+++..++ .++|||||||+++|+||||||+++++++++.++++..++
T Consensus 280 ~m~n~dl~rii~S~eiq~~~r~~~~~~~~~~~~~k~npl~n~~~~~~lnpya~~~~~~~~~~~~~~~~~~ 349 (362)
T 2wwb_H 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGT 349 (362)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccchhHHHHHhccHHHHHHhcccccccccccccccCCcchhHHHHHhcCHHHHHHHHHHHHHHHhcccch
Confidence 69999999999999999999999887765 788999999999999999999999999998888755444
No 4
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.84 E-value=1.4e-22 Score=186.32 Aligned_cols=69 Identities=41% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHH
Q psy14785 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLARE 69 (211)
Q Consensus 1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa 69 (211)
+|+|+||+|||||||||+||||+++.++++++|+|||+|+++|+||||||+++++++++.++++..+++
T Consensus 283 ~~~n~dl~rii~s~eiq~~l~~~~~~~~~~~~k~npl~n~~~~~~lnpya~~~~~~~~~~~~~~~~~~~ 351 (421)
T 2zkr_c 283 KMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRM 351 (421)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccchhHHHHHhcCHHHHHHhcccccccccccccCCCchhHHHHHhcCHHHHHHHHHHHHHHHHhHHHHH
Confidence 699999999999999999999999888889999999999999999999999999999998888665544
No 5
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=56.22 E-value=5.8 Score=32.59 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=33.9
Q ss_pred hhhhhhhhhhhcCCccCCCCcccCchhhHHhhhhcCCCCcccccccCCCceeeeecccHHHHHHHHh
Q psy14785 125 ATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRAL 191 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
..+.+|+.||-|| |||+++-+.-.+-|-.-.+....++-..|+.++
T Consensus 25 l~~ain~ILY~Rg---------------------iYP~e~F~~~k~y~l~v~~sr~p~l~~YI~~~l 70 (206)
T 2vfx_A 25 FSFGINSILYQRG---------------------IYPSETFTRVQKYGLTLLVTTDLELIKYLNNVV 70 (206)
T ss_dssp HHHHHHHHHHHTT---------------------SSCGGGEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---------------------CCChHHhHHHHHcCceeeEecCHHHHHHHHHHH
Confidence 3578999999987 999999888877776655565555555555544
No 6
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.54 E-value=6.4 Score=32.79 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=34.2
Q ss_pred hhhhhhhhhhcCCccCCCCcccCchhhHHhhhhcCCCCcccccccCCCceeeeecccHHHHHHHHh
Q psy14785 126 TFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRAL 191 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
.+++|+.||-|| |||+++-+.-.+-|-.-.+....++-..|+.++
T Consensus 24 ~~aInsILY~Rg---------------------IYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l 68 (203)
T 4aez_B 24 EYAVNSILFQRG---------------------IYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIV 68 (203)
T ss_dssp HHHHHHHHHHTT---------------------SSCGGGEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhccc---------------------cCChHHchHhhhcCccceeecCHHHHHHHHHHH
Confidence 578999999987 999999888888777766666666555544443
No 7
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=43.34 E-value=19 Score=27.80 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=25.8
Q ss_pred ccccCCCceeeeeccc----------HHHHHHHHh-------------cCccceeeCCCCc
Q psy14785 167 DHHKTGNCKVWNVKNG----------IGKLLQRAL-------------GSETHFRVDPLTP 204 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~----------~~~~~~~~~-------------~~~~~~~~~~~~~ 204 (211)
.||..|...||.-..| |-.+|+.+| |.++||+|.-.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~m~~~~I~~~L~~~l~p~~l~V~DeS~~G~gsHF~v~IVS~ 69 (113)
T 1v9j_A 9 HHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSA 69 (113)
T ss_dssp SCCCCCCCCCSSCCCCSSSSSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECS
T ss_pred cccccccceeeccCcccccccCcHHHHHHHHHhhCCCcEEEEEeccCCCCCceEEEEEEch
Confidence 4677888888876655 667777776 5566777654443
No 8
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=42.94 E-value=12 Score=31.25 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=30.6
Q ss_pred hhhhhhhhhhhcCCccCCCCcccCchhhHHhhhhcCCCCcccccccCCCceeeeecccHHHHHHHHh
Q psy14785 125 ATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRAL 191 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
..+++|+.||-|| |||+++-+.-.+-|---.+....++-..|+.++
T Consensus 39 levainsILY~Rg---------------------VYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l 84 (227)
T 3abd_A 39 LEVAVHLILYVRE---------------------VYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTL 84 (227)
T ss_dssp HHHHHHHHHHHTT---------------------SSCGGGEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc---------------------cCChHHhhHHHhcCCceEEecCHHHHHHHHHHH
Confidence 3678999999987 999999777655554444444445544444443
No 9
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=18.81 E-value=90 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=14.4
Q ss_pred cccCCCceeeeecccHHHHHHHHhcCcc
Q psy14785 168 HHKTGNCKVWNVKNGIGKLLQRALGSET 195 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (211)
||..|-..+..+.+. .-++.++.+..
T Consensus 9 ~~~~~~~~~~~i~~~--~~f~~~l~~~k 34 (121)
T 2j23_A 9 HHLVPRGSVQVISSY--DQFKQVTGGDK 34 (121)
T ss_dssp CCCCCCCCEEECCSH--HHHHHHHSSSS
T ss_pred ccccCCcceEEcCCH--HHHHHHHcCCC
Confidence 556666677777663 23445554443
No 10
>1e6y_A Methyl-coenzyme M reductase subunit alpha; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=18.63 E-value=79 Score=30.59 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.3
Q ss_pred chHHHHHH-HHHHHHHhhhCCccccce-eeccCh
Q psy14785 94 ISEEKRKL-AREAKLAEKRGVSTTSKY-LVGVPA 125 (211)
Q Consensus 94 ~~~~~~k~-~r~~k~~~~~~~~~~~~~-~~~~~~ 125 (211)
|++.++.+ .-.+||+++||++.-.-+ ++|+|.
T Consensus 44 qs~rk~ef~~~~~~~~~~rg~~~ynp~~~~g~pl 77 (569)
T 1e6y_A 44 QDPRKVEMIKAGKEIAEKRGIAFYNPMMHSGAPL 77 (569)
T ss_dssp GSHHHHHHHHHHHHHHHHHTSCCCCGGGSSSSCS
T ss_pred cChHHHHHHHHHHHHHHhcCCCccCcccccCccc
Confidence 36666666 667899999999876654 588885
Done!