Query psy14785
Match_columns 211
No_of_seqs 104 out of 203
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 20:48:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14785.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14785hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1go4a_ d.135.1.1 (A:) The spi 21.7 23 0.0016 26.6 2.3 41 126-187 18-58 (196)
2 d1e6va2 d.58.31.2 (A:8-272) Al 19.7 35 0.0026 28.0 3.3 30 95-125 30-60 (265)
3 d1hbna2 d.58.31.2 (A:2-269) Al 19.6 35 0.0026 28.1 3.3 30 95-125 33-63 (268)
4 d1e6ya2 d.58.31.2 (A:1002-1283 16.4 49 0.0036 27.3 3.4 25 94-118 44-69 (282)
5 d1q8ha_ g.32.1.1 (A:) Osteocal 15.9 26 0.0019 21.3 1.2 19 35-53 2-20 (37)
6 d1p22a2 b.69.4.1 (A:253-545) F 14.6 28 0.002 22.8 1.2 13 170-182 33-45 (293)
7 d2fr5a1 c.97.1.1 (A:11-146) mo 12.4 73 0.0053 22.6 3.0 28 96-123 3-30 (136)
8 d2masa_ c.70.1.1 (A:) Inosine- 12.1 32 0.0023 26.7 1.0 16 34-49 125-140 (313)
9 d1q8fa_ c.70.1.1 (A:) Pyrimidi 12.0 34 0.0025 26.5 1.1 17 33-49 121-137 (308)
10 d1r2za3 g.39.1.8 (A:229-274) D 11.9 36 0.0026 20.5 1.0 21 122-142 2-22 (46)
No 1
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.74 E-value=23 Score=26.63 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=29.1
Q ss_pred hhhhhhhhhhcCCccCCCCcccCchhhHHhhhhcCCCCcccccccCCCceeeeecccHHHHH
Q psy14785 126 TFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLL 187 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.+.+|.-||-|| +||.++-++-.+-|-+-.+....++-..|
T Consensus 18 ~~ai~~ILY~Rg---------------------iyP~~~F~~~~~~~l~v~~~~~~~l~~yi 58 (196)
T d1go4a_ 18 SFGINSILYQRG---------------------IYPSETFTRVQKYGLTLLVTTDLELIKYL 58 (196)
T ss_dssp HHHHHHHHHHTT---------------------SSCGGGEEEEEETTEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHcc---------------------CCChHHchhheECCeeEEEecCHHHHHHH
Confidence 457889999876 89999999988877665554444443333
No 2
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=19.70 E-value=35 Score=28.03 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=21.5
Q ss_pred hHHHHHH-HHHHHHHhhhCCccccceeeccCh
Q psy14785 95 SEEKRKL-AREAKLAEKRGVSTTSKYLVGVPA 125 (211)
Q Consensus 95 ~~~~~k~-~r~~k~~~~~~~~~~~~~~~~~~~ 125 (211)
++.++.+ .-.+|++++||++--.-. +|+|.
T Consensus 30 s~RK~Ef~~~~~ki~~~Rgi~~YnP~-~G~Pl 60 (265)
T d1e6va2 30 SERKKEFKEWADKIVEERGVPHYNPD-IGVPL 60 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCTT-SSCCS
T ss_pred ChHHHHHHHHHHHHHHhcCCCCcCCC-CCCcc
Confidence 6666665 566789999999765543 37775
No 3
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.57 E-value=35 Score=28.06 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=21.7
Q ss_pred hHHHHHH-HHHHHHHhhhCCccccceeeccCh
Q psy14785 95 SEEKRKL-AREAKLAEKRGVSTTSKYLVGVPA 125 (211)
Q Consensus 95 ~~~~~k~-~r~~k~~~~~~~~~~~~~~~~~~~ 125 (211)
++.++.+ .-.+|++++||++.-.-. +|+|.
T Consensus 33 s~RK~Ef~~~~~ki~~~Rgi~~YnP~-~G~Pl 63 (268)
T d1hbna2 33 SERKTEFVNAGKEVAAKRGIPQYNPD-IGTPL 63 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCCCTT-SSSCS
T ss_pred ChHHHHHHHHHHHHHHhcCCCCcCCC-CCCcc
Confidence 6666666 566789999999765543 37775
No 4
>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=16.38 E-value=49 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.9
Q ss_pred chHHHHHH-HHHHHHHhhhCCccccc
Q psy14785 94 ISEEKRKL-AREAKLAEKRGVSTTSK 118 (211)
Q Consensus 94 ~~~~~~k~-~r~~k~~~~~~~~~~~~ 118 (211)
|++.++.+ .-.+|++++||++.-.-
T Consensus 44 Qs~RK~EF~~~~~ki~~~Rgi~~YnP 69 (282)
T d1e6ya2 44 QDPRKVEMIKAGKEIAEKRGIAFYNP 69 (282)
T ss_dssp GSHHHHHHHHHHHHHHHHHTSCCCCG
T ss_pred cChHHHHHHHHHHHHHHhcCCCccCC
Confidence 37777776 56678999999987443
No 5
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.92 E-value=26 Score=21.34 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.9
Q ss_pred CccchHHHHhhcChHHHHH
Q psy14785 35 NPLTNKRMMLRLNPFAQVT 53 (211)
Q Consensus 35 NPLKN~~aMLRLNPYAKv~ 53 (211)
+||-..+..+.|||----+
T Consensus 2 dple~krevcelnpdcdel 20 (37)
T d1q8ha_ 2 DPLEPRREVCELNPDCDEL 20 (37)
T ss_dssp CTTHHHHHHHHHSHHHHHH
T ss_pred CcccchhhhHhcCCCHHHH
Confidence 7999999999999965443
No 6
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.62 E-value=28 Score=22.81 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=10.4
Q ss_pred cCCCceeeeeccc
Q psy14785 170 KTGNCKVWNVKNG 182 (211)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (211)
..|.++|||+.+|
T Consensus 33 ~Dg~i~vWd~~~~ 45 (293)
T d1p22a2 33 RDNTIKIWDKNTL 45 (293)
T ss_dssp SSSCEEEEESSSC
T ss_pred CCCeEEEEECCCC
Confidence 3578999999875
No 7
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.38 E-value=73 Score=22.62 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhCCccccceeecc
Q psy14785 96 EEKRKLAREAKLAEKRGVSTTSKYLVGV 123 (211)
Q Consensus 96 ~~~~k~~r~~k~~~~~~~~~~~~~~~~~ 123 (211)
|+-.+|..+|+-+.++-.+..|+|-||.
T Consensus 3 ~~~~~l~~~A~~a~~~AyaPYS~f~VGA 30 (136)
T d2fr5a1 3 EHVQRLLLSSREAKKSAYCPYSRFPVGA 30 (136)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCccCCcEEE
Confidence 3456888899999999999999999985
No 8
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]}
Probab=12.11 E-value=32 Score=26.66 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=14.5
Q ss_pred CCccchHHHHhhcChH
Q psy14785 34 LNPLTNKRMMLRLNPF 49 (211)
Q Consensus 34 KNPLKN~~aMLRLNPY 49 (211)
.=||+|++..+++.|-
T Consensus 125 ~GPLTNlA~al~~~P~ 140 (313)
T d2masa_ 125 TGGLTNIAMAARLEPR 140 (313)
T ss_dssp CSCSHHHHHHHHHCTH
T ss_pred cCCchHHHHHHHhhhh
Confidence 4799999999999995
No 9
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
Probab=12.04 E-value=34 Score=26.46 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=14.7
Q ss_pred CCCccchHHHHhhcChH
Q psy14785 33 KLNPLTNKRMMLRLNPF 49 (211)
Q Consensus 33 KKNPLKN~~aMLRLNPY 49 (211)
=.=||+|++.++++.|-
T Consensus 121 a~GPLTNiA~al~~~P~ 137 (308)
T d1q8fa_ 121 PVGPLSNIAVAMRMQPA 137 (308)
T ss_dssp ECSCSHHHHHHHHHCGG
T ss_pred ecccchHHHHHHHhChH
Confidence 34799999999999994
No 10
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.92 E-value=36 Score=20.54 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=16.7
Q ss_pred ccChhhhhhhhhhhcCCccCC
Q psy14785 122 GVPATFYLHHYLYTRGGQTGN 142 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ 142 (211)
|.+..|-.+|+.|.|.|+.=.
T Consensus 2 G~~G~fq~~~~VYgR~g~~C~ 22 (46)
T d1r2za3 2 GEAGTFQHHLYVYGRQGNPCK 22 (46)
T ss_dssp SCCCSGGGGCSSTTCTTSBCT
T ss_pred CCcccCcceeEEeCCCCCccC
Confidence 567788889999999887644
Done!