RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14785
(211 letters)
>gnl|CDD|222716 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal
domain. This family is found at the very C-terminal of
60 ribosomal L4 proteins.
Length = 80
Score = 88.8 bits (221), Expect = 2e-23
Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGV-RRASRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
MAN DL+RL+ S+EI+ VLR P + RR +K NPL N + ML+LNP+A+V R+A++
Sbjct: 9 KMANADLSRLINSDEIQSVLRAPKKKAKRRVVQKKNPLKNLQAMLKLNPYAKVARRAALL 68
Query: 60 SEEKRKLAREAK 71
+E+KRK A+ K
Sbjct: 69 AEKKRKKAKAEK 80
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 81.8 bits (202), Expect = 3e-18
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
M N DLAR++ S+E++ V+ + V+RA K NPL N ML+LNP+A+ R A+++E
Sbjct: 289 MVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAE 348
Query: 62 EKRKLAREAKLAEKR 76
R A++ KLA+KR
Sbjct: 349 AARVKAKKEKLAKKR 363
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 71.6 bits (176), Expect = 8e-15
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 1 MMANTDLARLLKSEEIKKVLR-RPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
+M N D+AR++ SEE++ VLR + +R +K NPL N+R+ LRLNP A+ + A++
Sbjct: 282 LMTNADIARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVL 341
Query: 60 SEEKRKLAREAKLAEKRGVSTTSKSLL 86
++EK K+ +R K+ L
Sbjct: 342 AQEKATAKGAQKVKNRRARKKAKKARL 368
>gnl|CDD|224942 COG2031, AtoE, Short chain fatty acids transporter [Lipid
metabolism].
Length = 446
Score = 31.2 bits (71), Expect = 0.42
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 72 LAEKRG-VSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLH 130
+A +G LLG + L ++ AE+ S L+ + YL
Sbjct: 210 MAPSKGETVEIDPKLLGDDVK----TAAKLLEKDRTPAERLENSRLLAILLVILGFGYLG 265
Query: 131 HYLYTRGG 138
+Y T+G
Sbjct: 266 YYFSTKGF 273
>gnl|CDD|199864 cd06240, M14-like_1_3, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 274
Score = 29.6 bits (67), Expect = 0.95
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 21/56 (37%)
Query: 57 AIISEEK--RKL----AREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAK 106
A IS + KL A KLA+ RG+S E+ RKLA E K
Sbjct: 17 AAISSPENLAKLDHYKAILRKLADPRGLSE---------------EQARKLAAEGK 57
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family. The
universal stress protein Usp is a small cytoplasmic
bacterial protein whose expression is enhanced when the
cell is exposed to stress agents. Usp enhances the rate
of cell survival during prolonged exposure to such
conditions, and may provide a general "stress endurance"
activity. The crystal structure of Haemophilus
influenzae Usp reveals an alpha/beta fold similar to
that of the Methanococcus jannaschii MJ0577 protein,
which binds ATP, athough Usp lacks ATP-binding activity.
Length = 130
Score = 28.1 bits (63), Expect = 1.7
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 60 SEEKRKLAREA-KLAEKRG-------VSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKR 111
SEE + R A +LA + G V S + E + L + +
Sbjct: 9 SEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEA 68
Query: 112 GVSTTSKYLVGVPA 125
GV + L G PA
Sbjct: 69 GVKVETVVLEGDPA 82
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 48 PFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKR 99
P + + + E + L + + GV + L G P AI+ +
Sbjct: 40 PSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEE 91
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 27.8 bits (61), Expect = 3.8
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 38 TNKRMMLRLNPFAQVTIRSAIISEEKRKLA-REAKLAEKRGVSTTSKSLLGVPRSAIISE 96
T K + + F +R+ E RK A R+ A K G+ +K LL V S I
Sbjct: 48 TIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDS-IEQA 106
Query: 97 EKRKLAREAKLAEKRGVSTTSKYLVGV 123
K ++ E +A K G+ T+K LV +
Sbjct: 107 LKHEVKLEEAIAMKEGIELTAKMLVDI 133
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 27.6 bits (62), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 70 AKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVST 115
A+LA + ++ K+L VP A+ SE+ + R +L + G+ST
Sbjct: 56 AELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGIST 101
>gnl|CDD|188684 cd08729, RGS_PX, Regulator of G protein signaling domain. These
uncharacterized RGS-like domains are found in proteins
that also contain one or more PX domains. The RGS domain
is an essential part of the Regulator of G-protein
Signaling (RGS) protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
role as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. As a major
G-protein regulator, the RGS domain containing proteins
that are involves in many crucial cellular processes.
RGS proteins regulate intracellular trafficking and
provide vital support for signal transduction. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, others RGS
proteins play important role in neuronal signals
modulation. Some RGS proteins are the principal elements
needed for proper vision.
Length = 136
Score = 26.3 bits (58), Expect = 7.1
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIIS 60
M+ T + S + K R PIR A +P R R A + + A+
Sbjct: 63 MIYETYFSDPSPSLNVPKASRDPIRLFLNAGVNASPNEQYRKARR----AVLMAQRAVYE 118
Query: 61 EEKRK 65
E + +
Sbjct: 119 EMEEE 123
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 26.8 bits (60), Expect = 8.8
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 71 KLAEKRGVSTTSKS------LLGVPRSAIISEEKRKLAREAKLAEKRGVSTT 116
+ G+ + S L G E L ++AEK GV+
Sbjct: 186 PYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPA 237
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 27.0 bits (59), Expect = 9.9
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 12 KSEEIKKV--LRRPIRGVRRASR-KLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAR 68
K+E +KK ++ ++A + N K R+ FA+ ++AI +EE RK
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR--QAAIKAEEARKADE 1282
Query: 69 EAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEK 110
K EK+ K+ ++E +K A EAK A++
Sbjct: 1283 LKKAEEKKKADEAKKA-----EEKKKADEAKKKAEEAKKADE 1319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,751,961
Number of extensions: 998295
Number of successful extensions: 1110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 26
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)