RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14785
         (211 letters)



>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 41  RMMLRL----NPFAQVTIRSAIISEEKRKLAREA 70
           R+   +    NP+A   +   +  +E R LAREA
Sbjct: 351 RVKFTMGLFENPYADPAMAEQLGKQEHRDLAREA 384


>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
           formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 146

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 10  LLKSEEIKKVLRRPIRGVRRASRKLNPLTN-KRMMLRLNPF--AQVT--IRSAIISEEKR 64
           LL + E    +   +R   R   +   L   + +   L+    AQV+  +    ++    
Sbjct: 9   LLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHT 68

Query: 65  KLAREAKLAEKRGVSTTSKSLLG-VPRSAII-------SEEKRKLAREAKLAEK 110
                 + A++  +      L+G VP  A++        +E   L ++      
Sbjct: 69  VFEETCREAQELSLPVVGSQLVGLVPLKALLDAAAFYCEKENLFLLQDEHRIRL 122


>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 389

 Score = 26.3 bits (56), Expect = 2.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)

Query: 82  SKSLLGVPRSAIISEEKRKLAREAKLAEKRGV 113
           S  +L    S I     RKL   A++A+KRGV
Sbjct: 2   SDRVLLTEESPI-----RKLVPFAEMAKKRGV 28


>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 25.0 bits (54), Expect = 5.7
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 96  EEKRKLAREAKLAEKRGVSTTSKYLVGVPA-----TFYLHHYLYTRGGQTG-----NRGS 145
           E  ++L   ++ A+K      S++ VG          +    +       G         
Sbjct: 3   EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQ 62

Query: 146 HHRNRGYAAIRKQVYPSDSEEDHH 169
              + GY   R     SD +E+  
Sbjct: 63  KAISEGYKDFRAIAISSDLQEEFI 86


>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase
          alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId:
          47881]}
          Length = 62

 Score = 23.1 bits (50), Expect = 8.3
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 8/46 (17%)

Query: 48 PFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAI 93
          P     +R     E+KR L+          +        G PR  I
Sbjct: 1  PMISCDMRYGRTDEQKRALSAG--------LLRVISEATGEPRENI 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0373    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 759,241
Number of extensions: 33815
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.4 bits)