BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14787
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 32 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 36 MHLFHQVCVDQWLITNKKCPICRVDIEAQL 65
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
C +C D E+ + LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 26 CVVCMCDFES---RQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRAD 69
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVD 25
H FH +CVD+WL +N+ CPICR D
Sbjct: 46 HEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 9 VDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
++ + S CP+C+ D L + +LPC HLFH C+ WL + CP+CR
Sbjct: 8 TEEHVGSGLECPVCKEDYA------LGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 69 I 69
+
Sbjct: 62 L 62
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
HLFH C+ WL + CP+CR +
Sbjct: 38 HLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
+ C +C ++E D + + C H FH ECVD WL S+ CP+CR+ +
Sbjct: 2 MDDGVECAVCLAELE-----DGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH ECVD WL S+ CP+CR+ +
Sbjct: 29 HGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
+RCPIC D + + LPC+H F C+ +W+ N CP+C+V +E+
Sbjct: 6 ERCPICLEDPSNY--------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28
+H F C+ +W+ N CP+C+V +E+
Sbjct: 25 LHAFCYVCITRWIRQNPTCPLCKVPVES 52
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
S + CPIC DI H ++ + LPC HL H C ++ L RCP+C
Sbjct: 3 SGSSGCPICLEDI--HTSRVVAH---VLPCGHLLHRTCYEEMLKEGYRCPLC 49
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 2 HLFHVECVDQWLSSNKRCPIC 22
HL H C ++ L RCP+C
Sbjct: 29 HLLHRTCYEEMLKEGYRCPLC 49
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
CPIC ++ D+ LPC H FH CV WL + CP+CR
Sbjct: 43 CPIC---CSEYVKGDV---ATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
H FH CV WL + CP+CR
Sbjct: 63 HYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
S + CPIC DI H ++ + LPC HL H C ++ L RCP+C
Sbjct: 4 SQQNCPICLEDI--HTSRVV---AHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 2 HLFHVECVDQWLSSNKRCPIC 22
HL H C ++ L RCP+C
Sbjct: 29 HLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 41 LPCMHLFHVECVDQWLSSNKRCPICRVDI 69
LPC H F +C+D+W ++ CPICR+ +
Sbjct: 30 LPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDI 26
H F +C+D+W ++ CPICR+ +
Sbjct: 33 AHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 41 LPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
L C H F C+++W+ CPICR DI++
Sbjct: 69 LNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H F C+++W+ CPICR DI++
Sbjct: 73 HSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 41 LPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
L C H F C+++W+ CPICR DI++
Sbjct: 80 LNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H F C+++W+ CPICR DI++
Sbjct: 84 HSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 41 LPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
L C H F C+++W+ CPICR DI++
Sbjct: 69 LNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H F C+++W+ CPICR DI++
Sbjct: 73 HSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 42 PCMHLFHVECVDQWLSSNKRCPICRVDI 69
PC H FH +C+ +WL K CP+C + +
Sbjct: 35 PCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH +C+ +WL K CP+C + +
Sbjct: 38 HAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 34 LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 79
+ T + C+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 21 FIDATTIIECLHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 64
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 36
+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 31 LHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 64
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 34 LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 79
+ T + C+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 25 FIDATTIIECLHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 68
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 36
+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 35 LHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 68
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 34 LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 79
+ T + C+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 25 FIDATTIIECLHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 68
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQ 36
+H F C+ ++L ++K CPIC D++ H + LL
Sbjct: 35 LHSFCKTCIVRYLETSKYCPIC--DVQVHKTRPLLN 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWLSSNKR-CPICRVDIE 70
PC HL C+ W S+ + CP CR +I+
Sbjct: 355 PCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 19 CPICRVDI-------ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
C ICRV + + ++ W C H FH C+ W+ N RCP+C+ D
Sbjct: 18 CAICRVQVMDACLRCQAENKQEDCVVVWG-ECNHSFHNCCMSLWVKQNNRCPLCQQD 73
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVD 25
H FH C+ W+ N RCP+C+ D
Sbjct: 50 HSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 86 HAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 77 HAFHFHCISRWLKTRQVCPL 96
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 75 HAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 67 HAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 75 HAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 69 HAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 43 CMHLFHVECVDQWLSSNKRCPI 64
C H FH C+ +WL + + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPI 21
H FH C+ +WL + + CP+
Sbjct: 59 HAFHFHCISRWLKTRQVCPL 78
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 42 PCMHLFHVECVDQWLSSNKR-CPICRVDIET 71
PC HL C+ W S+ + CP CR +I+
Sbjct: 43 PCGHLMCTSCLTAWQESDGQGCPFCRCEIKG 73
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL-SSNKRCPICRVDIETHLNKD 76
CPIC D+L+ T C+H F +C+ L S NK CP CR + ++K
Sbjct: 57 CPICL---------DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL---VSKR 104
Query: 77 LLQP 80
L+P
Sbjct: 105 SLRP 108
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 41 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 44 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL-SSNKRCPICR 66
L S CPIC D+L+ T C+H F +C+ L S NK CP CR
Sbjct: 31 LHSELMCPICL---------DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCR 77
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL-SSNKRCPICR 66
L S CPIC D+L+ T C+H F +C+ L S NK CP CR
Sbjct: 50 LHSELMCPICL---------DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCR 96
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 349 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 351 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 349 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 42 PCMHLFHVECVDQWL-SSNKRCPICRVDIE 70
PC HL C+ W S + CP CR +I+
Sbjct: 351 PCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 40 RLPCMHLFHVECVD--QWLSSNKRCPICRVDI 69
LPC H+F CV WL KRC +CR +I
Sbjct: 30 SLPCKHVFCYLCVKGASWL--GKRCALCRQEI 59
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 14 SSNKRCPICRVDI-ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
S CPIC E N L+ T C H+F +C+ L + CP CR I
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 28/94 (29%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI-------------------------ETHLNKDLLQ 36
H+F +C+ L + CP CR I E N L+
Sbjct: 34 HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIV 93
Query: 37 PTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
T C H+F +C+ L + CP CR I
Sbjct: 94 ST---ECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 14 SSNKRCPICRVDI-ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
S CPIC E N L+ T C H+F +C+ L + CP CR I
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVST---ECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 14 SSNKRCPICRVDI-ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
S CPIC E N L+ T C H+F +C+ L + CP CR I
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 19 CPICRVDI-ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
CPIC E N L+ T C H+F +C+ L + CP CR I
Sbjct: 6 CPICMDGYSEIVQNGRLIVST---ECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN---KRCPICRVDIETH 72
CPIC D+LQ + C H F ++C+ Q ++ +CP+C+ + +
Sbjct: 23 CPICL---------DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.504
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,637,185
Number of Sequences: 62578
Number of extensions: 91645
Number of successful extensions: 231
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 91
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)