BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14787
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 917 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 950
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 921 MHLFHQVCVDQWLITNKKCPICRVDIDTQL 950
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 922 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 955
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 926 MHLFHQVCVDQWLITNKKCPICRVDIDTQL 955
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 930 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 963
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 934 MHLFHQVCVDQWLITNKKCPICRVDIDTQL 963
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 952 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 985
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 956 MHLFHQVCVDQWLITNKKCPICRVDIEAQL 985
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 6/62 (9%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
++++C IC +E +D+ RLPCMHLFH CVDQWL+ +K+CPICRVDIET L
Sbjct: 290 TDEKCTICLSMLED--GEDV----RRLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 343
Query: 75 KD 76
D
Sbjct: 344 AD 345
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
MHLFH CVDQWL+ +K+CPICRVDIET L D
Sbjct: 313 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGAD 345
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 949 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 982
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 953 MHLFHQVCVDQWLITNKKCPICRVDIEAQL 982
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 6/62 (9%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
++++C IC +E +D+ RLPCMHLFH CVDQWL+ +K+CPICRVDIET L
Sbjct: 291 TDEKCTICLSMLED--GEDV----RRLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 344
Query: 75 KD 76
D
Sbjct: 345 AD 346
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
MHLFH CVDQWL+ +K+CPICRVDIET L D
Sbjct: 314 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGAD 346
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 957 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 990
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 961 MHLFHQVCVDQWLITNKKCPICRVDIEAQL 990
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
RLPCMHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 886 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 919
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHL 30
MHLFH CVDQWL +NK+CPICRVDI+T L
Sbjct: 890 MHLFHQVCVDQWLITNKKCPICRVDIDTQL 919
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
D +N+ C ICR+D E ++DL+ LPC H +H EC++ WL NK CP+C ++
Sbjct: 279 DNQNGTNESCVICRLDYED--DEDLIL----LPCKHSYHSECINNWLKINKVCPVCSAEV 332
Query: 70 ET 71
T
Sbjct: 333 ST 334
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H +H EC++ WL NK CP+C ++ T
Sbjct: 308 HSYHSECINNWLKINKVCPVCSAEVST 334
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 21 ICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
IC V I ++ + L+ +LPCMH FH+ C+D+WLS N CPICR
Sbjct: 631 ICSVCISDYVTGNKLR---QLPCMHEFHIHCIDRWLSENCTCPICR 673
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 1 MHLFHVECVDQWLSSNKRCPICR 23
MH FH+ C+D+WLS N CPICR
Sbjct: 651 MHEFHIHCIDRWLSENCTCPICR 673
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 21 ICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
+C V I ++ + L+ +LPC+H FH+ C+D+WLS N CP+CR
Sbjct: 613 VCSVCISDYVAGNKLR---QLPCLHEFHIHCIDRWLSENCTCPVCR 655
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 1 MHLFHVECVDQWLSSNKRCPICR 23
+H FH+ C+D+WLS N CP+CR
Sbjct: 633 LHEFHIHCIDRWLSENCTCPVCR 655
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
K C +C I + + L+ +LPC H +HV C+D+WLS N CPICR + + N++
Sbjct: 544 KTCSVC---ITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
H +HV C+D+WLS N CPICR + + N++
Sbjct: 566 HEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE + KDL++ LPC H+FH C+D WL ++ CP+C++D+
Sbjct: 264 CAVCIENYKTKDLVRI---LPCKHIFHRLCIDPWLIEHRTCPMCKLDV 308
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+D WL ++ CP+C++D+
Sbjct: 284 HIFHRLCIDPWLIEHRTCPMCKLDV 308
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
K C +C I + + L+ +LPC H +HV C+D+WLS N CPICR + N++
Sbjct: 568 KTCSVC---ITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
H +HV C+D+WLS N CPICR + N++
Sbjct: 590 HEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
K C +C I + + L+ +LPC H +HV C+D+WLS N CPICR
Sbjct: 583 KTCSVC---ITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENSTCPICR 626
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
H +HV C+D+WLS N CPICR
Sbjct: 605 HEYHVHCIDRWLSENSTCPICR 626
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
K C +C I + + L+ +LPC H +H+ C+D+WLS N CPICR + N++
Sbjct: 566 KTCSVC---ITEYTEGNKLR---KLPCSHEYHIHCIDRWLSENSTCPICRRAVLVASNRE 619
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
H +H+ C+D+WLS N CPICR + N++
Sbjct: 588 HEYHIHCIDRWLSENSTCPICRRAVLVASNRE 619
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
K C +C I + + L+ +LPC H +H+ C+D+WLS N CPICR
Sbjct: 701 KTCSVC---ITEYTEGNKLR---KLPCSHEYHIHCIDRWLSENSTCPICR 744
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
H +H+ C+D+WLS N CPICR
Sbjct: 723 HEYHIHCIDRWLSENSTCPICR 744
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
D S C +C D E + LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 371 DSHQSEQTLCVVCFSDFEA---RQLLRV---LPCNHEFHTKCVDKWLKANRTCPICRAD 423
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVD 25
H FH +CVD+WL +N+ CPICR D
Sbjct: 400 HEFHTKCVDKWLKANRTCPICRAD 423
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
S+ C ICR D+ H K LPC H+FH C+ W + CP CR++I
Sbjct: 285 SDNICIICREDMVNHSKK--------LPCGHIFHTTCLRSWFQRQQTCPTCRLNI 331
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR++I
Sbjct: 307 HIFHTTCLRSWFQRQQTCPTCRLNI 331
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE++ D+++ LPC H+FH CVD WLS + CP+C+++I
Sbjct: 264 CAVCIESYKQNDVVRV---LPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMH--LFHVECVDQWLSSN 59
H+FH CVD WLS + CP+C+++I L + P LPC F +E + + + N
Sbjct: 284 HVFHKSCVDPWLSEHCTCPMCKLNILKALG---IVPN--LPCTDNVAFDMERLTRTQAVN 338
Query: 60 KRCPI 64
+R +
Sbjct: 339 RRAAL 343
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICR 66
D LSS C IC +ET+ N D+ + C H FH C+DQWL++ N CP+CR
Sbjct: 757 DASLSSADSCLIC---LETYTNGDICRKLQ--ACKHFFHQACIDQWLTTGNNSCPLCR 809
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 2 HLFHVECVDQWLSS-NKRCPICR 23
H FH C+DQWL++ N CP+CR
Sbjct: 787 HFFHQACIDQWLTTGNNSCPLCR 809
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE KD+++ LPC H+FH C+D WL ++ CP+C++D+
Sbjct: 269 CAVCIENFKVKDIIRI---LPCKHIFHRICIDPWLLDHRTCPMCKLDV 313
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+D WL ++ CP+C++D+
Sbjct: 289 HIFHRICIDPWLLDHRTCPMCKLDV 313
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE++ D+++ LPC H+FH CVD WLS + CP+C+++I
Sbjct: 264 CAVCIESYKQNDVVRV---LPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH CVD WLS + CP+C+++I
Sbjct: 284 HVFHKSCVDPWLSEHCTCPMCKLNI 308
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C IC + E +++ L+ W PC H FH C+D WLSS CP+CR ++
Sbjct: 123 CAICLSEFE---DQETLR--WMPPCSHTFHANCIDVWLSSWSTCPVCRANL 168
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH C+D WLSS CP+CR ++
Sbjct: 144 HTFHANCIDVWLSSWSTCPVCRANL 168
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE KD+++ LPC H+FH C+D WL ++ CP+C++D+
Sbjct: 265 CAVCIENFKVKDVIRI---LPCKHIFHRICIDPWLLDHRTCPMCKLDV 309
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+D WL ++ CP+C++D+
Sbjct: 285 HIFHRICIDPWLLDHRTCPMCKLDV 309
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE++ D+++ LPC H+FH CVD WLS + CP+C+++I
Sbjct: 264 CAVCIESYKQNDVVRI---LPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH CVD WLS + CP+C+++I
Sbjct: 284 HVFHKSCVDPWLSEHCTCPMCKLNI 308
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
+ +RC IC+ L + + LPC H++H EC+ +WLS NK CP+C ++
Sbjct: 193 AGERCVICQ------LKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H++H EC+ +WLS NK CP+C ++
Sbjct: 217 HVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C IC + ++K+ L+ W PC H FH C+D WLSS CP CR ++
Sbjct: 123 CAIC---LSEFVDKETLR--WMPPCSHTFHANCIDVWLSSQSTCPACRANL 168
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH C+D WLSS CP CR ++
Sbjct: 144 HTFHANCIDVWLSSQSTCPACRANL 168
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCP 63
F V D+ + + C ICR ++ + RLPC H+FH C+ W + CP
Sbjct: 277 FPVVSNDELSAMDATCIICREEMTVESSPK------RLPCSHVFHAHCLRSWFQRQQTCP 330
Query: 64 ICRVDI 69
CR DI
Sbjct: 331 TCRTDI 336
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR DI
Sbjct: 312 HVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 19 CPICRVDIETHLNKDLLQPTWRL--PCMHLFHVECVDQWLSSNKRCPICRVDI 69
C +C + E T RL PC H+FH +CVD WLS + CP+CR D+
Sbjct: 135 CAVCLCEFED-------DETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH +CVD WLS + CP+CR D+
Sbjct: 156 HVFHADCVDVWLSEHSTCPLCRADL 180
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
D S C +C D E + LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 289 DSHQSEQTLCVVCFSDFEV---RQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRAD 341
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVD 25
H FH +CVD+WL +N+ CPICR D
Sbjct: 318 HEFHAKCVDKWLKANRTCPICRAD 341
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C ICR ++++ RLPC H+FH C+ W + CP CR+D+
Sbjct: 285 CIICR--------EEMVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 327
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR+D+
Sbjct: 303 HIFHTSCLRSWFQRQQTCPTCRMDV 327
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 6 VECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
++ ++ + S CP+C+ D + +LPC HLFH +C+ WL + CP+C
Sbjct: 214 IQITEEHVGSGLECPVCKEDYTVG------ESVRQLPCNHLFHNDCIIPWLEQHDTCPVC 267
Query: 66 R 66
R
Sbjct: 268 R 268
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
HLFH +C+ WL + CP+CR
Sbjct: 247 HLFHNDCIIPWLEQHDTCPVCR 268
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
D S C +C D E + LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 346 DSHQSEQTLCVVCFSDFEV---RQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRADA 399
Query: 70 E 70
Sbjct: 400 S 400
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIE 27
H FH +CVD+WL +N+ CPICR D
Sbjct: 375 HEFHAKCVDKWLKANRTCPICRADAS 400
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCP 63
F V + + + C ICR ++ + RLPC H+FH C+ W + CP
Sbjct: 277 FPVVSAEDLAAMDATCIICREEMTVDASPK------RLPCSHVFHAHCLRSWFQRQQTCP 330
Query: 64 ICRVDI 69
CR DI
Sbjct: 331 TCRTDI 336
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR DI
Sbjct: 312 HVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C ICR ++++ RLPC H+FH C+ W + CP CR+D+
Sbjct: 291 CIICR--------EEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 333
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR+D+
Sbjct: 309 HIFHTSCLRSWFQRQQTCPTCRMDV 333
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
S C +C D E+ + LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 391 SEQTLCVVCFSDFES---RQLLR---VLPCNHEFHAKCVDKWLKTNRTCPICRAD 439
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVD 25
H FH +CVD+WL +N+ CPICR D
Sbjct: 416 HEFHAKCVDKWLKTNRTCPICRAD 439
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI-ETHLNKD 76
C +C D E+ + LL+ LPC H FH +CVD+WL +N+ CPICR D E H + +
Sbjct: 463 CVVCMCDFES---RQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE 515
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI-ETHLNKD 33
H FH +CVD+WL +N+ CPICR D E H + +
Sbjct: 483 HEFHAKCVDKWLKANRTCPICRADASEVHRDSE 515
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C ICR ++++ RLPC H+FH C+ W + CP CR+D+
Sbjct: 291 CIICR--------EEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 333
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR+D+
Sbjct: 309 HIFHTSCLRSWFQRQQTCPTCRMDV 333
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 10 DQWLSSNKRCPICRVDI----ETHLNKDLLQP--------TWRLPCMHLFHVECVDQWLS 57
+Q +S++ C ICR ++ N D ++P RLPC H+ H C+ WL
Sbjct: 283 EQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLE 342
Query: 58 SNKRCPICR 66
+ CPICR
Sbjct: 343 RQQTCPICR 351
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
H+ H C+ WL + CPICR
Sbjct: 330 HILHFHCLRNWLERQQTCPICR 351
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 41 LPCMHLFHVECVDQWLSSNKRCPICRVDI 69
LPC H FHVEC+DQWL N +CP CR +
Sbjct: 251 LPCAHNFHVECIDQWLRLNVKCPRCRCSV 279
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FHVEC+DQWL N +CP CR +
Sbjct: 255 HNFHVECIDQWLRLNVKCPRCRCSV 279
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI-ETHLNKD 76
C +C D E+ + LL+ LPC H FH +CVD+WL N+ CPICR D E H + +
Sbjct: 466 CVVCMCDFES---RQLLR---VLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE 518
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI-ETHLNKD 33
H FH +CVD+WL N+ CPICR D E H + +
Sbjct: 486 HEFHAKCVDKWLKGNRTCPICRADASEVHRDSE 518
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
CP+C + E + LL C H FH+ C+D WLSS+ CP+CR I
Sbjct: 177 CPVCLNEFEEDESLRLLPK-----CNHAFHISCIDTWLSSHTNCPLCRAGI 222
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH+ C+D WLSS+ CP+CR I
Sbjct: 198 HAFHISCIDTWLSSHTNCPLCRAGI 222
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C ICR ++++ RLPC H+FH C+ W + CP CR+D+
Sbjct: 285 CIICR--------EEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 327
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR+D+
Sbjct: 303 HIFHTSCLRSWFQRQQTCPTCRMDV 327
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
+++ C ICR ++ T K LPC H+FH C+ W + CP CR+D+
Sbjct: 286 ATDNVCIICREEMVTGAKK--------LPCNHIFHSSCLRSWFQRQQTCPTCRMDV 333
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+FH C+ W + CP CR+D+
Sbjct: 309 HIFHSSCLRSWFQRQQTCPTCRMDV 333
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 22 CRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C V IE + D+++ LPC HLFH CVD WL ++ CP+C+++I
Sbjct: 278 CAVCIEGYKPNDVVRI---LPCRHLFHKSCVDPWLLDHRTCPMCKMNI 322
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
HLFH CVD WL ++ CP+C+++I
Sbjct: 298 HLFHKSCVDPWLLDHRTCPMCKMNI 322
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 39 WRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT 81
W PC H FH C+D+WLSS CP+CR ++ P+
Sbjct: 135 WMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPS 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT 38
H FH C+D+WLSS CP+CR ++ P+
Sbjct: 141 HTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPS 177
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 6 VECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
++ ++ + S CP+C+ D + +LPC HLFH +C+ WL + CP+C
Sbjct: 215 IQITEEHVGSGLECPVCKEDYTVG------ECVRQLPCNHLFHNDCIIPWLEQHDTCPVC 268
Query: 66 R 66
R
Sbjct: 269 R 269
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
HLFH +C+ WL + CP+CR
Sbjct: 248 HLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 6 VECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
V ++ + S CP+C+ D L + +LPC HLFH C+ WL + CP+C
Sbjct: 218 VPVTEEHVGSGLECPVCKEDYA------LGESVRQLPCNHLFHDSCIVPWLEQHDSCPVC 271
Query: 66 R 66
R
Sbjct: 272 R 272
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
HLFH C+ WL + CP+CR
Sbjct: 251 HLFHDSCIVPWLEQHDSCPVCR 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.504
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,726,729
Number of Sequences: 539616
Number of extensions: 1110383
Number of successful extensions: 3693
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 2733
Number of HSP's gapped (non-prelim): 1151
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)