Query psy14787
Match_columns 81
No_of_seqs 132 out of 1397
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:50:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.6 1.1E-16 3.7E-21 78.7 3.6 52 13-70 2-54 (55)
2 2kiz_A E3 ubiquitin-protein li 99.6 2.2E-16 7.7E-21 80.8 3.4 55 14-74 12-66 (69)
3 2ect_A Ring finger protein 126 99.6 4.9E-16 1.7E-20 81.2 3.4 56 13-74 12-67 (78)
4 1x4j_A Ring finger protein 38; 99.6 1.9E-16 6.6E-21 82.3 1.7 53 14-72 21-73 (75)
5 2l0b_A E3 ubiquitin-protein li 99.6 3.5E-16 1.2E-20 84.2 2.5 52 14-71 38-89 (91)
6 2ep4_A Ring finger protein 24; 99.6 5.7E-16 1.9E-20 80.3 2.9 55 13-73 12-66 (74)
7 3ng2_A RNF4, snurf, ring finge 99.6 5.3E-16 1.8E-20 79.6 2.5 61 14-76 8-68 (71)
8 2ecl_A Ring-box protein 2; RNF 99.6 9.2E-16 3.1E-20 81.0 3.2 62 11-72 10-77 (81)
9 2xeu_A Ring finger protein 4; 99.6 1.1E-15 3.7E-20 76.9 2.1 60 15-76 2-61 (64)
10 3dpl_R Ring-box protein 1; ubi 99.6 2.3E-15 7.8E-20 83.2 3.5 61 12-72 33-102 (106)
11 2djb_A Polycomb group ring fin 99.6 2.7E-15 9.3E-20 77.4 3.6 56 13-77 12-68 (72)
12 2ecm_A Ring finger and CHY zin 99.5 2.5E-15 8.4E-20 73.7 2.9 51 15-70 4-54 (55)
13 4ap4_A E3 ubiquitin ligase RNF 99.5 3.7E-15 1.3E-19 84.2 3.9 75 2-76 34-130 (133)
14 2ea6_A Ring finger protein 4; 99.5 1.9E-15 6.6E-20 77.0 2.2 58 12-71 11-68 (69)
15 4ayc_A E3 ubiquitin-protein li 99.5 2.8E-15 9.6E-20 86.0 2.8 52 12-72 49-100 (138)
16 2d8t_A Dactylidin, ring finger 99.5 2.3E-15 7.9E-20 77.5 1.7 51 14-73 13-63 (71)
17 1v87_A Deltex protein 2; ring- 99.5 8E-15 2.7E-19 81.5 4.0 58 16-73 25-96 (114)
18 2ecy_A TNF receptor-associated 99.5 1.7E-14 5.9E-19 73.2 4.2 52 12-72 11-63 (66)
19 1chc_A Equine herpes virus-1 r 99.5 1.4E-14 4.7E-19 73.8 3.5 50 15-72 4-53 (68)
20 2egp_A Tripartite motif-contai 99.5 9.2E-15 3.1E-19 76.3 2.6 53 12-73 8-67 (79)
21 1t1h_A Gspef-atpub14, armadill 99.5 1.6E-14 5.4E-19 75.4 3.3 51 13-72 5-56 (78)
22 2ysl_A Tripartite motif-contai 99.5 2.3E-14 7.8E-19 73.8 3.5 52 12-72 16-70 (73)
23 2ecv_A Tripartite motif-contai 99.5 4E-14 1.4E-18 74.5 4.1 53 12-73 15-73 (85)
24 3lrq_A E3 ubiquitin-protein li 99.5 1.3E-14 4.5E-19 79.2 2.1 53 11-72 17-71 (100)
25 2ecw_A Tripartite motif-contai 99.5 4.4E-14 1.5E-18 74.4 3.9 51 13-72 16-72 (85)
26 2yur_A Retinoblastoma-binding 99.5 2.5E-14 8.5E-19 74.2 2.7 49 13-70 12-63 (74)
27 2csy_A Zinc finger protein 183 99.5 2.6E-14 8.8E-19 75.2 2.7 48 14-70 13-60 (81)
28 4a0k_B E3 ubiquitin-protein li 99.5 5.2E-15 1.8E-19 83.0 -0.2 60 12-71 44-112 (117)
29 2ct2_A Tripartite motif protei 99.4 5.4E-14 1.9E-18 74.6 3.5 56 12-72 11-69 (88)
30 2y43_A E3 ubiquitin-protein li 99.4 3.7E-14 1.3E-18 77.1 2.8 52 12-72 18-70 (99)
31 2ckl_A Polycomb group ring fin 99.4 4.1E-14 1.4E-18 78.0 2.7 53 11-72 10-63 (108)
32 4ap4_A E3 ubiquitin ligase RNF 99.4 4.9E-14 1.7E-18 79.5 2.8 59 14-74 5-63 (133)
33 2ysj_A Tripartite motif-contai 99.4 1.2E-13 4.2E-18 69.4 3.9 46 11-65 15-63 (63)
34 1jm7_A BRCA1, breast cancer ty 99.4 1.3E-13 4.4E-18 76.1 4.3 54 11-73 16-72 (112)
35 3fl2_A E3 ubiquitin-protein li 99.4 5.9E-14 2E-18 79.1 3.0 52 11-71 47-99 (124)
36 3knv_A TNF receptor-associated 99.4 3.4E-14 1.2E-18 81.9 1.4 60 2-70 17-77 (141)
37 2ecn_A Ring finger protein 141 99.4 3.5E-14 1.2E-18 72.7 1.2 51 13-73 12-62 (70)
38 2ecj_A Tripartite motif-contai 99.4 2.2E-13 7.6E-18 67.2 3.8 45 12-65 11-58 (58)
39 1g25_A CDK-activating kinase a 99.4 2E-13 6.8E-18 69.0 3.5 57 15-76 2-60 (65)
40 3ztg_A E3 ubiquitin-protein li 99.4 1.6E-13 5.5E-18 73.5 3.0 49 12-69 9-60 (92)
41 3hct_A TNF receptor-associated 99.4 5.3E-14 1.8E-18 78.7 0.9 54 10-72 12-66 (118)
42 1z6u_A NP95-like ring finger p 99.4 3E-13 1E-17 78.6 2.8 51 13-72 75-126 (150)
43 2ct0_A Non-SMC element 1 homol 99.4 5.4E-13 1.8E-17 69.3 3.3 53 13-73 12-66 (74)
44 1rmd_A RAG1; V(D)J recombinati 99.3 3.3E-13 1.1E-17 75.2 2.4 52 13-73 20-72 (116)
45 2d8s_A Cellular modulator of i 99.3 5.4E-13 1.9E-17 70.3 2.9 53 14-73 13-72 (80)
46 2ckl_B Ubiquitin ligase protei 99.3 3.6E-13 1.2E-17 79.1 1.6 49 14-71 52-102 (165)
47 2kr4_A Ubiquitin conjugation f 99.3 1.2E-12 4.2E-17 69.5 3.0 52 12-72 10-61 (85)
48 3l11_A E3 ubiquitin-protein li 99.3 2E-13 6.7E-18 76.0 -0.3 49 14-71 13-62 (115)
49 1jm7_B BARD1, BRCA1-associated 99.3 1.1E-12 3.8E-17 73.2 2.3 51 10-71 16-67 (117)
50 2kre_A Ubiquitin conjugation f 99.3 2E-12 6.8E-17 70.7 2.8 51 13-72 26-76 (100)
51 1wgm_A Ubiquitin conjugation f 99.3 3.2E-12 1.1E-16 69.6 3.3 51 13-72 19-70 (98)
52 1e4u_A Transcriptional repress 99.3 7E-12 2.4E-16 65.7 4.3 53 13-72 8-63 (78)
53 1bor_A Transcription factor PM 99.2 2.3E-12 7.9E-17 63.5 2.1 47 15-73 5-51 (56)
54 3hcs_A TNF receptor-associated 99.2 1.7E-12 5.9E-17 76.4 0.8 59 4-72 7-66 (170)
55 2vje_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 63.9 2.2 49 15-72 7-58 (64)
56 2y1n_A E3 ubiquitin-protein li 99.2 1.6E-11 5.6E-16 80.4 4.6 51 14-73 330-381 (389)
57 2vje_B MDM4 protein; proto-onc 99.2 1.1E-11 3.8E-16 62.4 2.1 50 14-72 5-57 (63)
58 4ic3_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 65.0 1.2 49 11-72 19-68 (74)
59 2c2l_A CHIP, carboxy terminus 99.1 3.7E-11 1.3E-15 74.7 2.8 50 14-72 206-256 (281)
60 2ecg_A Baculoviral IAP repeat- 99.1 7.8E-11 2.7E-15 61.0 2.8 49 11-72 20-69 (75)
61 2yu4_A E3 SUMO-protein ligase 99.1 4.6E-11 1.6E-15 64.4 1.7 48 14-70 5-62 (94)
62 2f42_A STIP1 homology and U-bo 99.0 2.2E-10 7.6E-15 68.3 2.9 50 14-72 104-154 (179)
63 3k1l_B Fancl; UBC, ring, RWD, 98.9 2.8E-10 9.7E-15 73.6 1.9 59 15-75 307-377 (381)
64 2yho_A E3 ubiquitin-protein li 98.9 1.6E-10 5.5E-15 60.6 0.0 48 12-72 14-62 (79)
65 2ea5_A Cell growth regulator w 98.8 1.5E-09 5.1E-14 55.3 2.5 46 14-72 13-59 (68)
66 1wim_A KIAA0161 protein; ring 98.8 9.4E-10 3.2E-14 59.1 0.7 53 15-73 4-68 (94)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.8 5.1E-09 1.7E-13 52.2 3.3 48 15-71 5-59 (60)
68 3t6p_A Baculoviral IAP repeat- 98.8 8.9E-10 3E-14 71.4 0.6 49 11-72 290-339 (345)
69 3htk_C E3 SUMO-protein ligase 98.7 2.4E-09 8.2E-14 67.0 1.6 51 13-72 178-233 (267)
70 2bay_A PRE-mRNA splicing facto 98.7 5.8E-09 2E-13 52.1 1.4 51 16-75 3-54 (61)
71 3nw0_A Non-structural maintena 98.4 4.1E-07 1.4E-11 56.3 4.1 49 16-72 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 49.7 2.2 47 18-72 3-50 (101)
73 2d8s_A Cellular modulator of i 97.6 2.3E-05 7.9E-10 40.8 1.8 28 1-28 41-70 (80)
74 2ecl_A Ring-box protein 2; RNF 97.6 3.5E-05 1.2E-09 40.0 2.0 28 1-28 49-76 (81)
75 1iym_A EL5; ring-H2 finger, ub 97.3 0.0001 3.5E-09 35.1 1.7 26 1-26 28-53 (55)
76 3dpl_R Ring-box protein 1; ubi 97.3 0.00011 3.9E-09 40.1 2.0 26 2-27 75-100 (106)
77 1x4j_A Ring finger protein 38; 97.1 0.00014 4.7E-09 36.9 0.8 27 2-28 46-72 (75)
78 2kiz_A E3 ubiquitin-protein li 97.1 0.00025 8.4E-09 35.3 1.7 28 1-28 36-63 (69)
79 2l0b_A E3 ubiquitin-protein li 97.0 0.00028 9.5E-09 37.2 1.9 28 1-28 62-89 (91)
80 1v87_A Deltex protein 2; ring- 97.0 0.00032 1.1E-08 38.2 2.2 28 1-28 62-94 (114)
81 2ecm_A Ring finger and CHY zin 97.0 0.00017 5.7E-09 34.3 0.9 26 1-26 28-53 (55)
82 2ko5_A Ring finger protein Z; 97.0 0.00036 1.2E-08 37.3 2.1 49 15-74 27-76 (99)
83 2ea6_A Ring finger protein 4; 97.0 0.00024 8.4E-09 35.1 1.1 27 1-27 41-67 (69)
84 2ecn_A Ring finger protein 141 96.9 0.00039 1.3E-08 34.6 1.8 28 1-28 33-60 (70)
85 2ep4_A Ring finger protein 24; 96.9 0.0005 1.7E-08 34.6 2.2 28 1-28 37-64 (74)
86 2ect_A Ring finger protein 126 96.9 0.00028 9.6E-09 35.9 1.2 28 1-28 37-64 (78)
87 3ng2_A RNF4, snurf, ring finge 96.9 0.00034 1.2E-08 34.8 1.2 27 2-28 37-63 (71)
88 2xeu_A Ring finger protein 4; 96.8 0.00039 1.3E-08 33.8 1.2 28 1-28 29-56 (64)
89 2ct0_A Non-SMC element 1 homol 96.8 0.0012 4.3E-08 33.8 2.9 27 2-28 36-64 (74)
90 4a0k_B E3 ubiquitin-protein li 96.8 0.00021 7.3E-09 39.7 0.0 26 2-27 86-111 (117)
91 2d8t_A Dactylidin, ring finger 96.7 0.00064 2.2E-08 34.0 1.5 28 1-28 34-61 (71)
92 2djb_A Polycomb group ring fin 96.6 0.0014 4.9E-08 32.8 2.4 28 1-28 35-62 (72)
93 1chc_A Equine herpes virus-1 r 96.5 0.00071 2.4E-08 33.4 0.9 28 1-28 25-52 (68)
94 1wil_A KIAA1045 protein; ring 96.3 0.013 4.6E-07 30.7 5.2 35 14-55 13-47 (89)
95 2ecy_A TNF receptor-associated 96.1 0.0038 1.3E-07 30.6 2.2 28 1-28 34-62 (66)
96 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.0021 7.3E-08 31.5 1.2 26 2-27 31-58 (60)
97 4ayc_A E3 ubiquitin-protein li 96.0 0.0034 1.1E-07 35.4 2.0 27 1-27 72-98 (138)
98 2csy_A Zinc finger protein 183 96.0 0.0024 8.1E-08 32.6 1.1 27 1-27 34-60 (81)
99 2y43_A E3 ubiquitin-protein li 95.9 0.0045 1.5E-07 32.7 2.1 28 1-28 42-69 (99)
100 1t1h_A Gspef-atpub14, armadill 95.8 0.0048 1.6E-07 31.1 1.9 27 2-28 28-55 (78)
101 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0043 1.5E-07 33.0 1.6 34 15-54 2-35 (101)
102 2ysl_A Tripartite motif-contai 95.5 0.0075 2.6E-07 29.9 1.9 28 1-28 39-69 (73)
103 2ct2_A Tripartite motif protei 95.4 0.0051 1.7E-07 31.6 1.2 28 1-28 38-68 (88)
104 2ckl_A Polycomb group ring fin 95.4 0.0079 2.7E-07 32.3 2.0 28 1-28 35-62 (108)
105 3lrq_A E3 ubiquitin-protein li 95.2 0.0067 2.3E-07 32.3 1.3 28 1-28 42-70 (100)
106 2yur_A Retinoblastoma-binding 95.1 0.0066 2.3E-07 30.5 1.0 27 1-27 35-63 (74)
107 2ecj_A Tripartite motif-contai 95.1 0.012 4E-07 27.8 1.8 22 1-22 34-58 (58)
108 2lri_C Autoimmune regulator; Z 95.0 0.016 5.5E-07 28.9 2.3 46 15-69 11-60 (66)
109 1g25_A CDK-activating kinase a 95.0 0.014 4.9E-07 28.4 2.0 28 1-28 27-55 (65)
110 2ecw_A Tripartite motif-contai 94.9 0.01 3.6E-07 30.0 1.4 28 1-28 38-71 (85)
111 2egp_A Tripartite motif-contai 94.8 0.0086 2.9E-07 30.1 1.0 28 1-28 31-65 (79)
112 1wgm_A Ubiquitin conjugation f 94.8 0.016 5.6E-07 30.9 2.0 27 2-28 43-69 (98)
113 2ysj_A Tripartite motif-contai 94.7 0.015 5E-07 28.1 1.5 22 1-22 39-63 (63)
114 2kre_A Ubiquitin conjugation f 94.5 0.019 6.4E-07 30.8 1.9 27 2-28 49-75 (100)
115 2ecv_A Tripartite motif-contai 94.5 0.012 4.3E-07 29.7 1.1 28 1-28 38-71 (85)
116 2kr4_A Ubiquitin conjugation f 94.5 0.014 4.7E-07 30.3 1.3 27 2-28 34-60 (85)
117 2ckl_B Ubiquitin ligase protei 94.4 0.018 6.1E-07 33.2 1.7 27 1-27 74-101 (165)
118 1fp0_A KAP-1 corepressor; PHD 94.4 0.0073 2.5E-07 31.9 0.0 49 15-72 24-76 (88)
119 3fl2_A E3 ubiquitin-protein li 94.3 0.02 7E-07 31.4 1.8 28 1-28 71-99 (124)
120 1jm7_A BRCA1, breast cancer ty 94.1 0.024 8E-07 30.4 1.7 28 1-28 40-70 (112)
121 3v43_A Histone acetyltransfera 93.8 0.11 3.8E-06 28.2 4.1 39 15-53 4-42 (112)
122 1rmd_A RAG1; V(D)J recombinati 93.6 0.026 8.8E-07 30.6 1.3 28 1-28 42-70 (116)
123 2bay_A PRE-mRNA splicing facto 93.3 0.023 7.8E-07 27.7 0.7 27 2-28 24-50 (61)
124 1z6u_A NP95-like ring finger p 93.1 0.044 1.5E-06 31.3 1.8 28 1-28 97-125 (150)
125 3hct_A TNF receptor-associated 93.1 0.027 9.2E-07 30.7 0.8 27 2-28 38-65 (118)
126 3l11_A E3 ubiquitin-protein li 92.8 0.031 1.1E-06 30.2 0.9 27 1-27 34-61 (115)
127 3ztg_A E3 ubiquitin-protein li 92.7 0.04 1.4E-06 28.5 1.2 26 1-26 33-60 (92)
128 3m62_A Ubiquitin conjugation f 92.7 0.1 3.5E-06 38.1 3.4 51 14-73 889-940 (968)
129 2l5u_A Chromodomain-helicase-D 91.5 0.076 2.6E-06 25.8 1.3 44 15-67 10-57 (61)
130 1f62_A Transcription factor WS 91.5 0.089 3E-06 24.5 1.5 44 18-67 2-49 (51)
131 1jm7_B BARD1, BRCA1-associated 90.2 0.11 3.8E-06 28.1 1.3 25 1-27 42-66 (117)
132 1mm2_A MI2-beta; PHD, zinc fin 90.1 0.074 2.5E-06 25.9 0.4 45 15-68 8-56 (61)
133 3o36_A Transcription intermedi 89.8 0.066 2.2E-06 31.5 0.1 46 15-69 3-52 (184)
134 2y1n_A E3 ubiquitin-protein li 89.6 0.16 5.6E-06 33.5 1.9 28 1-28 351-379 (389)
135 1e4u_A Transcriptional repress 89.5 0.25 8.7E-06 25.1 2.2 27 2-28 35-62 (78)
136 1weo_A Cellulose synthase, cat 89.4 1.4 4.9E-05 23.2 6.0 53 16-70 16-69 (93)
137 3knv_A TNF receptor-associated 89.0 0.22 7.5E-06 28.1 1.9 25 2-26 51-76 (141)
138 2ro1_A Transcription intermedi 88.5 0.17 5.8E-06 30.0 1.3 44 16-68 2-49 (189)
139 2k16_A Transcription initiatio 88.3 0.07 2.4E-06 26.9 -0.4 49 16-70 18-70 (75)
140 2cs3_A Protein C14ORF4, MY039 87.4 0.64 2.2E-05 24.1 2.9 38 15-58 14-52 (93)
141 2puy_A PHD finger protein 21A; 87.1 0.034 1.1E-06 27.0 -2.0 46 15-69 4-53 (60)
142 2c2l_A CHIP, carboxy terminus 86.5 0.22 7.4E-06 30.4 0.9 27 2-28 228-255 (281)
143 3k1l_B Fancl; UBC, ring, RWD, 86.2 0.14 4.9E-06 33.6 0.0 27 2-28 336-373 (381)
144 2ysm_A Myeloid/lymphoid or mix 86.0 0.19 6.5E-06 27.1 0.5 37 15-57 6-42 (111)
145 2kwj_A Zinc finger protein DPF 85.3 0.58 2E-05 25.4 2.2 38 17-54 2-40 (114)
146 2yql_A PHD finger protein 21A; 84.7 0.055 1.9E-06 25.8 -1.9 43 15-66 8-54 (56)
147 1xwh_A Autoimmune regulator; P 84.6 0.082 2.8E-06 26.1 -1.3 45 15-68 7-55 (66)
148 3u5n_A E3 ubiquitin-protein li 84.5 0.17 5.9E-06 30.3 -0.2 46 15-69 6-55 (207)
149 3hcs_A TNF receptor-associated 83.8 0.33 1.1E-05 27.9 0.8 27 2-28 38-65 (170)
150 2lbm_A Transcriptional regulat 83.5 1.1 3.7E-05 25.5 2.9 43 16-67 63-116 (142)
151 1vfy_A Phosphatidylinositol-3- 83.4 0.46 1.6E-05 23.8 1.2 42 7-54 3-44 (73)
152 1z60_A TFIIH basal transcripti 82.8 0.57 1.9E-05 22.8 1.3 43 17-65 16-58 (59)
153 2f42_A STIP1 homology and U-bo 82.6 0.49 1.7E-05 27.9 1.3 27 2-28 126-153 (179)
154 2lv9_A Histone-lysine N-methyl 79.2 0.4 1.4E-05 25.5 0.0 26 42-67 47-75 (98)
155 2ko5_A Ring finger protein Z; 78.9 0.92 3.1E-05 24.2 1.4 27 2-28 47-73 (99)
156 3htk_C E3 SUMO-protein ligase 77.8 1 3.5E-05 28.3 1.6 27 2-28 202-232 (267)
157 3nw0_A Non-structural maintena 77.6 2.2 7.6E-05 26.1 3.0 27 2-28 201-229 (238)
158 4fo9_A E3 SUMO-protein ligase 77.2 1.2 4.2E-05 29.1 1.9 47 17-71 216-266 (360)
159 2e6r_A Jumonji/ARID domain-con 76.8 0.12 4.1E-06 27.2 -2.4 48 15-68 15-66 (92)
160 1wev_A Riken cDNA 1110020M19; 75.9 0.46 1.6E-05 24.7 -0.3 52 16-71 16-75 (88)
161 3i2d_A E3 SUMO-protein ligase 75.2 1.5 5E-05 28.9 1.8 46 17-70 250-299 (371)
162 3mjh_B Early endosome antigen 74.3 0.56 1.9E-05 20.2 -0.2 14 15-28 4-17 (34)
163 2vpb_A Hpygo1, pygopus homolog 72.5 2.5 8.4E-05 20.7 1.9 32 16-53 8-41 (65)
164 2yw8_A RUN and FYVE domain-con 71.8 2 6.8E-05 21.9 1.5 40 11-55 12-53 (82)
165 3ql9_A Transcriptional regulat 71.6 4.6 0.00016 22.6 3.1 27 42-68 74-111 (129)
166 1we9_A PHD finger family prote 70.6 1.5 5.3E-05 21.0 0.9 49 15-68 5-58 (64)
167 2gmg_A Hypothetical protein PF 70.0 1.4 4.7E-05 23.9 0.7 29 38-71 68-96 (105)
168 3shb_A E3 ubiquitin-protein li 70.0 0.42 1.4E-05 24.4 -1.3 26 42-67 46-76 (77)
169 3asl_A E3 ubiquitin-protein li 69.6 0.65 2.2E-05 23.1 -0.6 26 42-67 38-68 (70)
170 1x62_A C-terminal LIM domain p 68.8 2.1 7.2E-05 21.2 1.2 39 15-70 14-52 (79)
171 2yt5_A Metal-response element- 67.9 1.3 4.4E-05 21.4 0.3 50 15-68 5-61 (66)
172 2ku3_A Bromodomain-containing 67.8 1.8 6.1E-05 21.6 0.8 53 11-67 11-65 (71)
173 3zyq_A Hepatocyte growth facto 67.0 1 3.6E-05 27.3 -0.2 41 9-55 158-198 (226)
174 2e6s_A E3 ubiquitin-protein li 66.0 0.81 2.8E-05 23.3 -0.7 26 42-67 46-76 (77)
175 1wig_A KIAA1808 protein; LIM d 64.2 3.2 0.00011 20.2 1.4 37 17-70 6-42 (73)
176 1zfo_A LAsp-1; LIM domain, zin 64.2 5.5 0.00019 16.3 1.9 27 17-51 4-30 (31)
177 3lqh_A Histone-lysine N-methyl 64.0 2.5 8.7E-05 24.9 1.1 53 16-70 2-65 (183)
178 3ask_A E3 ubiquitin-protein li 62.7 1.5 5E-05 26.9 -0.1 26 42-67 194-224 (226)
179 1m3v_A FLIN4, fusion of the LI 62.6 12 0.00042 20.0 3.7 30 43-72 53-82 (122)
180 2xb1_A Pygopus homolog 2, B-ce 62.3 3.1 0.00011 22.2 1.2 50 16-70 3-63 (105)
181 1x64_A Alpha-actinin-2 associa 62.2 3.4 0.00011 20.9 1.2 39 16-71 25-63 (89)
182 1dvp_A HRS, hepatocyte growth 61.4 1.8 6.1E-05 26.0 0.1 39 10-54 156-194 (220)
183 2d8x_A Protein pinch; LIM doma 61.3 2.3 7.7E-05 20.4 0.5 39 16-71 5-43 (70)
184 2cor_A Pinch protein; LIM doma 61.2 4.8 0.00016 19.9 1.7 39 16-71 15-53 (79)
185 1joc_A EEA1, early endosomal a 61.1 4.6 0.00016 22.2 1.7 40 11-55 62-103 (125)
186 1z2q_A LM5-1; membrane protein 60.0 5.1 0.00018 20.4 1.7 41 10-55 13-55 (84)
187 2l43_A N-teminal domain from h 59.1 5.4 0.00018 20.6 1.7 52 14-69 23-76 (88)
188 1x4u_A Zinc finger, FYVE domai 59.0 4 0.00014 20.7 1.2 40 10-54 6-47 (84)
189 3t7l_A Zinc finger FYVE domain 58.9 5.5 0.00019 20.6 1.7 41 10-55 12-54 (90)
190 1nyp_A Pinch protein; LIM doma 58.4 2.9 9.9E-05 19.8 0.6 38 17-71 6-43 (66)
191 1r79_A Diacylglycerol kinase, 58.0 13 0.00046 19.0 3.1 37 16-55 38-74 (84)
192 2kgg_A Histone demethylase jar 57.7 2.7 9.3E-05 19.4 0.4 25 42-66 24-52 (52)
193 2d8z_A Four and A half LIM dom 57.5 3.3 0.00011 19.8 0.7 37 17-70 6-42 (70)
194 1x6a_A LIMK-2, LIM domain kina 57.0 4.1 0.00014 20.1 1.0 37 17-70 16-52 (81)
195 2zet_C Melanophilin; complex, 57.0 6.2 0.00021 22.6 1.9 48 15-67 67-116 (153)
196 1wfk_A Zinc finger, FYVE domai 55.8 4.4 0.00015 20.9 1.0 34 16-54 9-42 (88)
197 2co8_A NEDD9 interacting prote 55.8 6.1 0.00021 19.7 1.6 41 15-71 14-54 (82)
198 2dar_A PDZ and LIM domain prot 55.4 2.2 7.7E-05 21.7 -0.2 38 16-70 25-62 (90)
199 2o35_A Hypothetical protein DU 55.3 5.4 0.00019 21.4 1.3 11 47-57 43-53 (105)
200 3fyb_A Protein of unknown func 55.2 5.5 0.00019 21.4 1.3 11 47-57 42-52 (104)
201 1wyh_A SLIM 2, skeletal muscle 55.0 4 0.00014 19.6 0.7 40 17-71 6-45 (72)
202 1wd2_A Ariadne-1 protein homol 54.9 3 0.0001 20.1 0.2 40 16-58 6-47 (60)
203 2jrp_A Putative cytoplasmic pr 54.6 0.63 2.1E-05 24.1 -2.4 12 17-28 3-14 (81)
204 2cur_A Skeletal muscle LIM-pro 53.6 3.5 0.00012 19.7 0.4 37 17-70 6-42 (69)
205 2xjy_A Rhombotin-2; oncoprotei 53.1 8.2 0.00028 20.8 1.9 51 14-70 27-77 (131)
206 2jne_A Hypothetical protein YF 52.4 0.47 1.6E-05 25.4 -3.1 43 16-72 32-74 (101)
207 3ro3_B Minsc, peptide of prote 52.0 4.2 0.00014 15.5 0.4 15 1-15 2-16 (22)
208 2d8v_A Zinc finger FYVE domain 51.2 4.5 0.00015 20.0 0.6 29 17-55 9-38 (67)
209 1zbd_B Rabphilin-3A; G protein 51.0 4.8 0.00017 22.5 0.7 36 15-54 54-89 (134)
210 1wen_A Inhibitor of growth fam 50.9 5.2 0.00018 19.8 0.8 25 43-69 37-66 (71)
211 2cuq_A Four and A half LIM dom 50.6 5.4 0.00019 19.5 0.8 37 17-70 16-52 (80)
212 1wep_A PHF8; structural genomi 50.6 6.9 0.00024 19.6 1.2 29 42-70 32-65 (79)
213 1x63_A Skeletal muscle LIM-pro 49.0 5.8 0.0002 19.5 0.8 40 17-71 16-55 (82)
214 2dlo_A Thyroid receptor-intera 48.6 3.7 0.00013 20.3 0.0 38 16-70 15-52 (81)
215 2ehe_A Four and A half LIM dom 47.5 8.3 0.00028 18.9 1.3 39 17-70 16-54 (82)
216 1v6g_A Actin binding LIM prote 47.2 4.2 0.00015 20.1 0.1 37 17-70 16-52 (81)
217 2cu8_A Cysteine-rich protein 2 46.9 3.6 0.00012 20.0 -0.2 40 16-71 9-48 (76)
218 1wem_A Death associated transc 46.4 10 0.00035 18.7 1.5 27 42-68 35-70 (76)
219 3o70_A PHD finger protein 13; 45.2 5.6 0.00019 19.5 0.4 46 15-67 18-66 (68)
220 1iml_A CRIP, cysteine rich int 44.7 2.5 8.6E-05 20.7 -1.0 45 14-68 25-70 (76)
221 2dj7_A Actin-binding LIM prote 44.5 6.2 0.00021 19.6 0.5 40 15-70 14-53 (80)
222 1y02_A CARP2, FYVE-ring finger 44.5 8.4 0.00029 21.2 1.0 48 16-68 19-66 (120)
223 2lq6_A Bromodomain-containing 44.4 12 0.00041 19.2 1.6 34 16-55 17-51 (87)
224 1x3h_A Leupaxin; paxillin fami 44.3 4.7 0.00016 19.8 0.0 38 17-71 16-53 (80)
225 2jmo_A Parkin; IBR, E3 ligase, 44.1 1.6 5.6E-05 22.1 -1.8 14 42-55 55-68 (80)
226 2jvx_A NF-kappa-B essential mo 43.1 8.2 0.00028 15.7 0.6 12 60-71 4-15 (28)
227 4gne_A Histone-lysine N-methyl 42.2 9 0.00031 20.6 0.9 31 14-53 13-45 (107)
228 1x4l_A Skeletal muscle LIM-pro 41.2 15 0.00051 17.4 1.6 42 16-70 5-46 (72)
229 1g47_A Pinch protein; LIM doma 40.8 8.5 0.00029 18.6 0.6 41 16-71 11-51 (77)
230 1x4k_A Skeletal muscle LIM-pro 40.5 6.1 0.00021 18.8 0.1 40 17-71 6-45 (72)
231 3a1b_A DNA (cytosine-5)-methyl 40.4 17 0.00059 21.0 2.0 17 42-58 98-114 (159)
232 2d8y_A Eplin protein; LIM doma 40.3 12 0.00041 18.8 1.2 12 16-27 15-26 (91)
233 1weu_A Inhibitor of growth fam 39.9 9.5 0.00032 19.9 0.8 27 43-69 57-86 (91)
234 2pv0_B DNA (cytosine-5)-methyl 39.3 20 0.00068 23.7 2.3 26 42-67 112-147 (386)
235 2l3k_A Rhombotin-2, linker, LI 38.9 12 0.00041 20.1 1.1 10 18-27 10-19 (123)
236 2vnf_A ING 4, P29ING4, inhibit 37.7 3.3 0.00011 19.8 -1.2 23 43-67 31-58 (60)
237 1l8d_A DNA double-strand break 37.6 9.2 0.00032 20.2 0.5 13 59-71 47-59 (112)
238 2fiy_A Protein FDHE homolog; F 37.1 4.1 0.00014 26.0 -1.1 52 14-68 180-231 (309)
239 3vhs_A ATPase wrnip1; zinc fin 36.1 13 0.00044 14.8 0.7 12 61-72 8-19 (29)
240 2a20_A Regulating synaptic mem 36.0 17 0.00059 17.6 1.3 12 14-25 7-18 (62)
241 1j2o_A FLIN2, fusion of rhombo 33.8 15 0.00051 19.4 1.0 15 44-58 52-66 (114)
242 2csz_A Synaptotagmin-like prot 33.3 22 0.00076 18.0 1.5 34 15-52 24-57 (76)
243 2jny_A Uncharacterized BCR; st 33.2 14 0.00047 18.2 0.7 16 57-72 8-23 (67)
244 1a7i_A QCRP2 (LIM1); LIM domai 32.9 5.7 0.0002 19.5 -0.8 12 16-27 7-18 (81)
245 3mpx_A FYVE, rhogef and PH dom 32.1 9.6 0.00033 24.7 0.0 55 10-69 367-430 (434)
246 2hf1_A Tetraacyldisaccharide-1 31.5 15 0.00053 18.0 0.7 12 61-72 10-21 (68)
247 2jr6_A UPF0434 protein NMA0874 31.2 17 0.00057 17.9 0.8 13 60-72 9-21 (68)
248 3f6q_B LIM and senescent cell 30.8 11 0.00036 17.8 0.0 42 16-72 11-52 (72)
249 4ayb_P DNA-directed RNA polyme 29.9 9.4 0.00032 17.6 -0.2 32 40-73 6-37 (48)
250 2js4_A UPF0434 protein BB2007; 29.5 17 0.00058 18.0 0.6 14 60-73 9-22 (70)
251 1rut_X Flinc4, fusion protein 28.3 13 0.00044 21.5 0.1 27 44-70 54-80 (188)
252 1x68_A FHL5 protein; four-and- 28.0 15 0.00053 17.7 0.4 41 17-70 6-46 (76)
253 2pk7_A Uncharacterized protein 27.5 15 0.0005 18.2 0.2 10 61-70 10-19 (69)
254 2xqn_T Testin, TESS; metal-bin 26.8 39 0.0013 17.8 1.9 27 43-71 49-75 (126)
255 2ct7_A Ring finger protein 31; 26.8 3.4 0.00012 21.1 -2.3 34 19-55 28-61 (86)
256 2kpi_A Uncharacterized protein 26.7 23 0.00079 16.6 0.8 13 60-72 11-23 (56)
257 2ri7_A Nucleosome-remodeling f 26.5 23 0.00079 20.1 1.0 48 15-68 7-59 (174)
258 1x4i_A Inhibitor of growth pro 25.9 5.2 0.00018 19.7 -1.7 27 45-71 30-58 (70)
259 2kdx_A HYPA, hydrogenase/ureas 24.7 40 0.0014 18.0 1.7 26 39-70 75-101 (119)
260 2iyb_E Testin, TESS, TES; LIM 23.0 11 0.00039 17.6 -0.7 38 18-70 4-43 (65)
261 2lcq_A Putative toxin VAPC6; P 22.4 21 0.00072 20.2 0.3 25 40-70 135-159 (165)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.65 E-value=1.1e-16 Score=78.67 Aligned_cols=52 Identities=38% Similarity=0.951 Sum_probs=43.9
Q ss_pred hcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
+.++..|+||++.+.. ...+..++ |+|.||..|+.+|+..+.+||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~------~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELED------GEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCT------TSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccC------CCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567789999999876 44566676 9999999999999999889999998764
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=80.80 Aligned_cols=55 Identities=56% Similarity=1.148 Sum_probs=46.0
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
.++..|+||++.+.. ...+..++|+|.||..||..|+..+..||+||..+.....
T Consensus 12 ~~~~~C~IC~~~~~~------~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEE------GEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCS------SSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccC------CCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 446679999998865 4456778999999999999999888899999999876543
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=4.9e-16 Score=81.23 Aligned_cols=56 Identities=34% Similarity=0.882 Sum_probs=46.2
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
..++..|+||++.+.. ...+..++|+|.||..||.+|+..+..||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~------~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYAL------GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCT------TSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccC------CCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 4557789999999865 3444567899999999999999988899999999876543
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=82.32 Aligned_cols=53 Identities=45% Similarity=0.970 Sum_probs=44.7
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.++..|+||++.+.. ...+..++|+|.||..||.+|+..+..||+||..+...
T Consensus 21 ~~~~~C~IC~~~~~~------~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES------RQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCB------TCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCC------CCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456789999999876 44456789999999999999998888999999987653
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-16 Score=84.20 Aligned_cols=52 Identities=35% Similarity=0.820 Sum_probs=44.0
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
.++..|+||++.+.. ...+..++|+|.||..||..|+..+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~------~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK------GDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCT------TCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcC------CCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345679999998866 4456678999999999999999988899999998764
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.7e-16 Score=80.25 Aligned_cols=55 Identities=29% Similarity=0.713 Sum_probs=45.0
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
+.++..|+||++.+.. ......++|+|.||..||.+|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~------~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP------RDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCS------SSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCC------CCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3456789999999876 334455689999999999999988889999999886543
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.58 E-value=5.3e-16 Score=79.62 Aligned_cols=61 Identities=25% Similarity=0.496 Sum_probs=47.1
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
.++..|+||++.+..... ....+..++|||.||..|+.+|+..+..||+||..+......+
T Consensus 8 ~~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHT--TTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhcccc--ccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 456789999999865210 1123367889999999999999988889999999987655443
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.2e-16 Score=81.03 Aligned_cols=62 Identities=29% Similarity=0.663 Sum_probs=45.2
Q ss_pred hhhcCCccccccccccccccc-----cCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLN-----KDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~-----~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+|..++..|+||++.+..... ....+.+..+ +|+|.||..||.+|+..+.+||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 10 SWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred eecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 444567889999999865210 0012223344 5999999999999999999999999988654
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=76.92 Aligned_cols=60 Identities=23% Similarity=0.481 Sum_probs=46.2
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (81)
++..|+||++.+..... ....+..++|||.||..|+.+|+..+..||+||..+......+
T Consensus 2 ~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHH--TTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccc--cCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 46789999999865210 0123367889999999999999988889999999987655443
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=2.3e-15 Score=83.24 Aligned_cols=61 Identities=26% Similarity=0.520 Sum_probs=45.5
Q ss_pred hhcCCccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
|-.++..|+||++.|....... .......++|+|.||..||..|+..+.+||+||..+...
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 3456788999999987632100 011235578999999999999999999999999987543
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=77.42 Aligned_cols=56 Identities=21% Similarity=0.521 Sum_probs=45.6
Q ss_pred hcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDL 77 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 77 (81)
+.+...|+||++.+.. +..+ +|+|.||..||..|+.....||+||..+.......+
T Consensus 12 ~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLID---------ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSS---------CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHC---------cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 4556789999998865 5554 899999999999999888899999999876544433
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.55 E-value=2.5e-15 Score=73.67 Aligned_cols=51 Identities=37% Similarity=0.776 Sum_probs=42.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
++..|+||++.+... ...+..++|+|.||..|+.+|+..+..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~-----~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-----RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTT-----TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCC-----CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999988541 234567889999999999999988899999998764
No 13
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.54 E-value=3.7e-15 Score=84.18 Aligned_cols=75 Identities=25% Similarity=0.581 Sum_probs=58.5
Q ss_pred cccchhhHHhhhcCCccccccccccccccccCc----------------------CCCCcccCCCCcccHhhHHHHHhCC
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDL----------------------LQPTWRLPCMHLFHVECVDQWLSSN 59 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~----------------------~~~~~~~~C~h~fh~~Ci~~~~~~~ 59 (81)
|.|+..|+.+|+.....||+|...+........ ......++|||.||..|+.+|+...
T Consensus 34 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 113 (133)
T 4ap4_A 34 HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 113 (133)
T ss_dssp CEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC
T ss_pred ChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC
Confidence 899999999999888899999988764221000 1112456899999999999999999
Q ss_pred CCCCCCccccccccccc
Q psy14787 60 KRCPICRVDIETHLNKD 76 (81)
Q Consensus 60 ~~CP~Cr~~~~~~~~~~ 76 (81)
++||+||..+......+
T Consensus 114 ~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 114 NTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCcCChhccee
Confidence 99999999987665443
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=77.00 Aligned_cols=58 Identities=26% Similarity=0.517 Sum_probs=44.7
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
.+.+...|+||++.+..... ....+..++|||.||..||..|+.....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTT--TTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCcccccccc--ccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567789999999875210 11223678899999999999999888899999998753
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.53 E-value=2.8e-15 Score=86.00 Aligned_cols=52 Identities=33% Similarity=0.783 Sum_probs=44.5
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+.++..|+||++.+.. ++.++|||.||..||..|+..+..||+||..+...
T Consensus 49 ~~~~~~~C~iC~~~~~~---------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 49 VLENELQCIICSEYFIE---------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHHHSBCTTTCSBCSS---------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred hccccCCCcccCcccCC---------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34556789999999865 67789999999999999999889999999988643
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-15 Score=77.51 Aligned_cols=51 Identities=31% Similarity=0.623 Sum_probs=43.7
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
.++..|+||++.+.. +..++|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~---------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---------PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSS---------EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCC---------CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 446789999998865 567899999999999999998889999999987543
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.52 E-value=8e-15 Score=81.46 Aligned_cols=58 Identities=19% Similarity=0.423 Sum_probs=41.7
Q ss_pred CccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHh-----CCCCCCCCcccccccc
Q psy14787 16 NKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLS-----SNKRCPICRVDIETHL 73 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 73 (81)
+..|+||++.|....... .......++|+|.||..||..|+. ....||+||..+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 468999999986532100 011222678999999999999993 4567999999886553
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=73.19 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=42.8
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~ 72 (81)
.+.+...|+||++.+.. +..++|||.||..|+.+|+. ....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS---------PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESS---------CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcC---------eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34567889999998865 55689999999999999995 456799999987653
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=1.4e-14 Score=73.81 Aligned_cols=50 Identities=38% Similarity=0.994 Sum_probs=42.1
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
++..|+||++.+.. .+..++|||.||..|+.+|+..+..||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--------CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 46689999998754 236788999999999999998888999999988643
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.49 E-value=9.2e-15 Score=76.33 Aligned_cols=53 Identities=21% Similarity=0.502 Sum_probs=44.0
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-------CCCCCCCcccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-------NKRCPICRVDIETHL 73 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-------~~~CP~Cr~~~~~~~ 73 (81)
.+.++..|+||++.+.. +..++|||.||..|+..|+.. ...||.||..+....
T Consensus 8 ~~~~~~~C~IC~~~~~~---------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSS---------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCC---------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 35667889999999865 667899999999999999976 457999999987543
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.49 E-value=1.6e-14 Score=75.43 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=43.6
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~ 72 (81)
+.++..|+||++.+.. +..++|||.||..||.+|+.. ...||+|+..+...
T Consensus 5 ~~~~~~C~IC~~~~~~---------Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---------CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4567889999999866 667899999999999999987 66799999988644
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=73.84 Aligned_cols=52 Identities=25% Similarity=0.619 Sum_probs=42.9
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~Cr~~~~~~ 72 (81)
.+.++..|+||++.+.. +..++|||.||..|+..|+. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~---------~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---------PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---------EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCC---------eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34567889999998865 66779999999999999996 345799999988654
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=74.53 Aligned_cols=53 Identities=25% Similarity=0.594 Sum_probs=44.2
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC------CCCCCCCcccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS------NKRCPICRVDIETHL 73 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 73 (81)
.+.+...|+||++.+.. +..++|||.||..|+..|+.. ...||.||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCC---------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567889999998865 667899999999999999876 667999999987543
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=79.19 Aligned_cols=53 Identities=25% Similarity=0.661 Sum_probs=44.8
Q ss_pred hhhcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSN-KRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~ 72 (81)
..+.++..|+||++.+.. +.. ++|||.||..||..|+... ..||.||..+...
T Consensus 17 ~~l~~~~~C~IC~~~~~~---------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRD---------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHHHTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCccCCccccC---------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 455667889999999865 556 8999999999999999877 6899999998654
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=4.4e-14 Score=74.39 Aligned_cols=51 Identities=27% Similarity=0.608 Sum_probs=43.2
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC------CCCCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS------NKRCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~------~~~CP~Cr~~~~~~ 72 (81)
+.++..|+||++.+.. +..++|+|.||..|+..|+.. ...||.||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS---------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc---------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567789999998865 567899999999999999976 55799999998754
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=74.19 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=41.2
Q ss_pred hcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC--CCCCCCccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN--KRCPICRVDIE 70 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~ 70 (81)
+.++..|+||++.+.. ++.++ |||.||..||..|+... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTT---------CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhC---------CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4556789999999866 67788 99999999999999754 57999999754
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=75.17 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=41.9
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
.+...|+||++.+.. +..++|||.||..|+.+|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---------PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---------EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---------eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 446689999999865 567899999999999999988889999999875
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.45 E-value=5.2e-15 Score=83.02 Aligned_cols=60 Identities=27% Similarity=0.529 Sum_probs=2.6
Q ss_pred hhcCCccccccccccccccccCc---------CCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDL---------LQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~---------~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
|-.++..|+||++.|........ ...+..++|+|.||..||.+|+..+.+||+||..+..
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ECCCC----------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 34557789999999875321110 1123346899999999999999999999999998754
No 29
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.4e-14 Score=74.65 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=44.1
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC---CCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN---KRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~~~~ 72 (81)
.+.+...|+||++.+... ...+..++|||.||..|+..|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~-----~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEE-----QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTT-----SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCcccccc-----CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 445677899999988651 1125677999999999999999765 6799999987654
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.44 E-value=3.7e-14 Score=77.08 Aligned_cols=52 Identities=25% Similarity=0.582 Sum_probs=43.4
Q ss_pred hhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+.+...|+||++.+.. +..+ +|||.||..|+..|+..+..||+||..+...
T Consensus 18 ~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNI---------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHHHTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred hCCCCCCcccCChhhCC---------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 34556789999999865 4455 8999999999999999888999999988753
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.44 E-value=4.1e-14 Score=78.04 Aligned_cols=53 Identities=26% Similarity=0.642 Sum_probs=45.3
Q ss_pred hhhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+.++..|+||++.+.. +..+ +|||.||..||..|+..+..||.||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFID---------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHHGGGTBCTTTSSBCSS---------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred hccCCcCCCccCChHHhC---------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456778899999999865 5565 9999999999999999888999999988753
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.43 E-value=4.9e-14 Score=79.55 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=46.1
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
.++..|+||++.+..+. .....+..++|||.||..||.+|+..+..||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHH--HTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCcc--ccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 45778999999987610 001223678999999999999999998999999998875544
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=69.37 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=38.4
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCC
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPIC 65 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~C 65 (81)
+.+.++..|+||++.+.. +..++|||.||..||.+|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK---------PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS---------CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC---------eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345667889999998865 67789999999999999997 44579987
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=1.3e-13 Score=76.15 Aligned_cols=54 Identities=30% Similarity=0.628 Sum_probs=44.1
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRVDIETHL 73 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~~~~~~~ 73 (81)
+.+.+...|+||++.+.. +..++|||.||..|+..|+..+. .||.||..+....
T Consensus 16 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 16 NAMQKILECPICLELIKE---------PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHHHHHTSCSSSCCCCSS---------CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred HhccCCCCCcccChhhcC---------eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 344557789999998865 66789999999999999997653 7999999887543
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.43 E-value=5.9e-14 Score=79.06 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=43.5
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIET 71 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~ 71 (81)
..+.++..|+||++.+.. +..++|||.||..||..|+..+. .||.||..+..
T Consensus 47 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFR---------PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHTBCTTTSSBCSS---------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HhCccCCCCCcCChHHcC---------cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 344566789999999866 66789999999999999997554 79999998865
No 36
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.42 E-value=3.4e-14 Score=81.95 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=50.7
Q ss_pred cccchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIE 70 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~ 70 (81)
.+|+.+.+.+.+.+...|+||++.+.. ++.++|||.||..||..|+..+. .||+||..+.
T Consensus 17 ~g~~~~~~~~~l~~~~~C~IC~~~~~~---------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 17 PGFSKTLLGTKLEAKYLCSACRNVLRR---------PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CSBCGGGTGGGCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcchhhhhccCCcCcCCCCCChhhcC---------cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 467777777888889999999999866 56789999999999999997665 7999999753
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-14 Score=72.70 Aligned_cols=51 Identities=33% Similarity=0.862 Sum_probs=42.6
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
+.++..|+||++.+. . ..++|+|.||..|+.+|+.....||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~--------~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRA--------D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCC--------S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCcc--------C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345678999998863 2 57889999999999999998889999999887543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=67.17 Aligned_cols=45 Identities=24% Similarity=0.719 Sum_probs=36.9
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCC
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPIC 65 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~C 65 (81)
.+.+...|+||++.+.. +..++|||.||..||.+|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE---------PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS---------CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc---------cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567789999999866 56789999999999999954 45679987
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=2e-13 Score=69.01 Aligned_cols=57 Identities=19% Similarity=0.426 Sum_probs=42.1
Q ss_pred CCcccccccc-ccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccccccc
Q psy14787 15 SNKRCPICRV-DIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETHLNKD 76 (81)
Q Consensus 15 ~~~~C~iC~~-~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~ 76 (81)
++..|+||++ .+..+ ......++|||.||..|+.+|+..+ ..||+||..+.......
T Consensus 2 ~~~~C~IC~~~~~~~~-----~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP-----SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCS-----SCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCC-----ccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 4678999999 66551 1111357899999999999997654 57999999987655443
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=73.55 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=41.3
Q ss_pred hhcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC--CCCCCCcccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN--KRCPICRVDI 69 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~ 69 (81)
.+.++..|+||++.+.. +..++ |||.||..||..|+... ..||.||..+
T Consensus 9 ~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSS---------CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcC---------ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34567889999999866 77888 99999999999998643 5799999986
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.39 E-value=5.3e-14 Score=78.74 Aligned_cols=54 Identities=26% Similarity=0.565 Sum_probs=44.9
Q ss_pred HhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH 72 (81)
Q Consensus 10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~ 72 (81)
.+.+.+...|+||++.+.. ++.++|||.||..||..|+..+. .||+||..+...
T Consensus 12 ~~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 12 DPPLESKYECPICLMALRE---------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcCChhhcC---------eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3455667889999999866 56779999999999999997665 899999988754
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=78.63 Aligned_cols=51 Identities=22% Similarity=0.540 Sum_probs=43.3
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~ 72 (81)
+.+...|+||++.+.. +..++|||.||..||..|+..+. .||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~---------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQ---------PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSS---------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcC---------CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4456789999998866 66789999999999999998765 799999998755
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=69.34 Aligned_cols=53 Identities=28% Similarity=0.494 Sum_probs=41.9
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCcccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRVDIETHL 73 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 73 (81)
......|+||.+.+.. .. ....|+|.||..||.+|+++. .+||+|+..|....
T Consensus 12 ~~~i~~C~IC~~~i~~------g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ------GQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSSCBCSSSCCBCSS------SE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred cCCCCcCcchhhHccc------CC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3455789999999864 21 233799999999999999877 78999999987543
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=3.3e-13 Score=75.16 Aligned_cols=52 Identities=25% Similarity=0.497 Sum_probs=43.3
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETHL 73 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 73 (81)
+.++..|+||++.+.. +..++|||.||..||.+|+.. +..||+||..+....
T Consensus 20 ~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHILAD---------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHhcC---------cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4456789999999865 566899999999999999976 668999999987543
No 45
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=70.30 Aligned_cols=53 Identities=28% Similarity=0.744 Sum_probs=41.4
Q ss_pred cCCccccccccccccccccCcCCCCcccCCC-----CcccHhhHHHHHhCC--CCCCCCcccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCM-----HLFHVECVDQWLSSN--KRCPICRVDIETHL 73 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-----h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 73 (81)
.++..|.||++.++. .. ...+||+ |.||..||.+|+..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~------~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDD------ES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCS------SS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccC------CC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 345689999988764 23 3467886 999999999999765 47999999987544
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=3.6e-13 Score=79.08 Aligned_cols=49 Identities=37% Similarity=0.767 Sum_probs=40.3
Q ss_pred cCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhC-CCCCCCCcccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSS-NKRCPICRVDIET 71 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~ 71 (81)
.+...|+||++.+.. +..+ +|||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS---------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC---------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345689999999865 4454 89999999999999987 6679999998853
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.30 E-value=1.2e-12 Score=69.53 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=45.2
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+.+...|+||++.|.. ++.++|||+|+..||..|+....+||+|+..+...
T Consensus 10 ~~p~~~~CpI~~~~m~d---------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD---------PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcC---------CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34567889999999877 77889999999999999998778899999988654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=2e-13 Score=75.97 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=41.5
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIET 71 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~ 71 (81)
.++..|+||++.+.. +..++|||.||..||..|+.. ...||.||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---------CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---------eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 446789999999865 677899999999999999976 5579999998864
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.1e-12 Score=73.22 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=42.9
Q ss_pred HhhhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
.+.+.+...|+||++.+.. +..+ +|||.||..||..|+. ..||+||..+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~---------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILRE---------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSS---------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred HHhchhCCCCCCCChHhhC---------ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 3455678899999999865 6677 8999999999999987 779999998854
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=2e-12 Score=70.67 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=44.6
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+...|+||++.|.. ++.++|||+|+..||..|+....+||.|+..+...
T Consensus 26 ~p~~~~CpI~~~~m~d---------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---------PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSS---------EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccC---------CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3557789999999877 77889999999999999998888899999988754
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=3.2e-12 Score=69.63 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=44.8
Q ss_pred hcCCccccccccccccccccCcCCCCcccCCC-CcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCM-HLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+...|+||++.|.. ++.++|| |+|+..||..|+....+||+|+..+...
T Consensus 19 ~p~~~~CpI~~~~m~d---------PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---------PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccC---------CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4567889999999877 7788999 9999999999998888899999988754
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.25 E-value=7e-12 Score=65.71 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=40.1
Q ss_pred hcCCccccccccccccccccCcCCCCccc--CCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWRL--PCMHLFHVECVDQWLSS-NKRCPICRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~ 72 (81)
+.++..|+||++.+.. ..+..+ +|||.||..|+.+++.. ...||.||..+...
T Consensus 8 ~~~~~~CpICle~~~~-------~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI-------DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCT-------TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCcc-------ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4667889999997743 113333 49999999999998743 45799999988654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=63.48 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=39.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
+...|+||++.+.. +..++|||.||..|+..| ...||+||..+....
T Consensus 5 ~~~~C~IC~~~~~~---------p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC---------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC---------eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 46779999999866 678899999999999773 567999999887543
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=1.7e-12 Score=76.42 Aligned_cols=59 Identities=27% Similarity=0.589 Sum_probs=46.8
Q ss_pred cchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787 4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH 72 (81)
Q Consensus 4 ~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~ 72 (81)
|+.+ +...+.+...|+||++.+.. ++.++|||.|+..||.+|+..+. .||.||..+...
T Consensus 7 ~~~~-~~~~~~~~~~C~IC~~~~~~---------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 7 YDVE-FDPPLESKYECPICLMALRE---------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp BCSE-ESSCCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CChh-hccCCCCCCCCCCCChhhcC---------cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4444 33455677899999999866 56789999999999999997644 899999988754
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.21 E-value=5e-12 Score=63.91 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=40.4
Q ss_pred CCccccccccccccccccCcCCCCccc--CCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRL--PCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
++..|.||++.... +..+ ||||. |+..|+..|...+..||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~---------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKN---------GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSC---------EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCC---------EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 45679999987644 4444 99999 89999999998888999999988643
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.19 E-value=1.6e-11 Score=80.38 Aligned_cols=51 Identities=29% Similarity=0.707 Sum_probs=43.1
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCcccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETHL 73 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 73 (81)
.....|+||++.+.. +..++|||.||..|+..|+. ....||+||..+....
T Consensus 330 ~~~~~C~ICle~~~~---------pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDKD---------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBCC---------EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCCCC---------eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 334689999998755 67889999999999999998 6778999999887653
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.16 E-value=1.1e-11 Score=62.40 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=40.4
Q ss_pred cCCccccccccccccccccCcCCCCccc--CCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRL--PCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
..+..|.||++.... +..+ ||||. |+..|+.+|...+..||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~---------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---------GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSC---------EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCC---------eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 345679999987543 3344 99998 99999999998888999999988643
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.15 E-value=6.8e-12 Score=64.99 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=40.7
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+.++..|+||++.+.. +..++|||. ||..|+..| ..||+||..+...
T Consensus 19 ~~~~~~~~C~iC~~~~~~---------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIA---------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHHHHHTBCTTTSSSBCC---------EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred hcCccCCCCCCCCCCCCC---------EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 344567789999998755 678899999 999999988 7799999988754
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=3.7e-11 Score=74.73 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=42.2
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETH 72 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~ 72 (81)
.+...|+||++.|.. |+.++|||+|+..||..|+..+ ..||+|+.++...
T Consensus 206 ~~~~~c~i~~~~~~d---------Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---------PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSS---------EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcC---------CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 346779999999876 7788999999999999999754 4599999998654
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7.8e-11 Score=61.03 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=39.3
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+.++..|+||++.+.. +..++|||. ||..|+... ..||+||..+...
T Consensus 20 ~~~~~~~~C~IC~~~~~~---------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIA---------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHHSCSSSCSSCCC---------BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred HcCCCCCCCCcCCCCCCC---------EEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 444556789999998755 677899999 999999653 6799999988653
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.6e-11 Score=64.44 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=39.4
Q ss_pred cCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC------CCCCC--Cccc-cc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN------KRCPI--CRVD-IE 70 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~------~~CP~--Cr~~-~~ 70 (81)
.+...|+||++.|.. ++.++ |||+|+..||..|+..+ ..||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~d---------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSS---------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcC---------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 456789999999876 77785 99999999999999653 47999 8755 44
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=2.2e-10 Score=68.27 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=42.4
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETH 72 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~ 72 (81)
.+...|+||++.|.. |+.++|||+|+..||..|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~D---------PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE---------PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC---------CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 456789999999876 7788999999999999999764 4699999988654
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.92 E-value=2.8e-10 Score=73.63 Aligned_cols=59 Identities=20% Similarity=0.536 Sum_probs=41.5
Q ss_pred CCccccccccccccccccCcCCC-CcccCCCCcccHhhHHHHHhCC-----------CCCCCCcccccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQP-TWRLPCMHLFHVECVDQWLSSN-----------KRCPICRVDIETHLNK 75 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~-~~~~~C~h~fh~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 75 (81)
+...|+||++.+... +..... -...+|+|.||..|+.+|+.+. +.||.|+.++..+.+.
T Consensus 307 ~~~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 307 EELRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp SCCSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred CCccCcccceeecCC--CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 345799999987641 111111 1235799999999999999642 3599999999877654
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.90 E-value=1.6e-10 Score=60.56 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=39.3
Q ss_pred hhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+.++..|+||++.+.. +..+||||. |+..|+..| ..||+||..+...
T Consensus 14 ~l~~~~~C~IC~~~~~~---------~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEIN---------STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHTBCTTTSSSBCC---------EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred cCCCCCEeEEeCcccCc---------EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 44556789999988655 778899999 999999876 3899999988754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=55.31 Aligned_cols=46 Identities=28% Similarity=0.662 Sum_probs=37.8
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
.+...|.||++.... +..+||||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---------~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---------WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---------CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---------EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 446789999987644 778999999 99999984 36799999988754
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=9.4e-10 Score=59.07 Aligned_cols=53 Identities=21% Similarity=0.477 Sum_probs=37.9
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----C----CCCCC--Cccc--ccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----N----KRCPI--CRVD--IETHL 73 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~----~~CP~--Cr~~--~~~~~ 73 (81)
+...|+||++.+.. .......+|||.||..|+..++.. + ..||. |+.. +....
T Consensus 4 ~~~~C~IC~~~~~~------~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 4 GSSGCKLCLGEYPV------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp SBCCCSSSCCCCBG------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CCcCCcccCccccc------ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 45689999998765 111122369999999999999853 1 25999 9988 65443
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.78 E-value=5.1e-09 Score=52.18 Aligned_cols=48 Identities=29% Similarity=0.600 Sum_probs=35.2
Q ss_pred CCccccccccccccccccCcCCCCcccCCC--C---cccHhhHHHHHhC--CCCCCCCcccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCM--H---LFHVECVDQWLSS--NKRCPICRVDIET 71 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~--h---~fh~~Ci~~~~~~--~~~CP~Cr~~~~~ 71 (81)
+...|.||++.... ...+||. + .||..|+.+|+.. +..||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~---------~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGN---------ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSC---------CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCC---------ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45679999886321 2356754 4 8999999999964 4679999988653
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.78 E-value=8.9e-10 Score=71.37 Aligned_cols=49 Identities=31% Similarity=0.689 Sum_probs=41.2
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+.+.++..|+||++.+.. +..++|||. ||..|+..| ..||+||..+...
T Consensus 290 ~~l~~~~~C~IC~~~~~~---------~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVS---------VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HHHHTTCBCTTTSSSBCC---------EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred HhCcCCCCCCccCCcCCc---------eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 445667889999998765 778899999 999999987 6799999988754
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.4e-09 Score=67.01 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=41.0
Q ss_pred hcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCC--CCCCC--Cccccccc
Q psy14787 13 LSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSN--KRCPI--CRVDIETH 72 (81)
Q Consensus 13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~--~~CP~--Cr~~~~~~ 72 (81)
......||||++.|.. |+. ..|||+|+..||..|+..+ ..||+ |+..+...
T Consensus 178 ~~~el~CPIcl~~f~D---------PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEA---------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSS---------EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccC---------CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3456789999999876 555 4899999999999998764 35999 99877543
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.67 E-value=5.8e-09 Score=52.11 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=42.4
Q ss_pred CccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK 75 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 75 (81)
...|+|+++.+.+ ++.. ++||+|...+|.+|+..+.+||+.+..+......
T Consensus 3 ~~~CpIs~~~m~d---------PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRR---------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSS---------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCC---------CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 3579999999866 6676 8999999999999998778899999988765443
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.36 E-value=4.1e-07 Score=56.30 Aligned_cols=49 Identities=29% Similarity=0.503 Sum_probs=38.5
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC--CCCCCccccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK--RCPICRVDIETH 72 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~--~CP~Cr~~~~~~ 72 (81)
...|.||.+.+.. + .....|++.||..|+..|++... .||.|+..|...
T Consensus 180 i~~C~iC~~iv~~------g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQ------G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSS------C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhC------C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5679999998754 1 22334999999999999997654 799999998755
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.29 E-value=3.2e-07 Score=49.70 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=35.8
Q ss_pred cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETH 72 (81)
Q Consensus 18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~ 72 (81)
.|.+|.-.+.. ..+..||+|+|+.+|+..|.+ ..+.||.|+..+...
T Consensus 3 fC~~C~~Pi~i--------ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--------YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--------EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--------EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47777665532 245679999999999999975 457899999987644
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.3e-05 Score=40.84 Aligned_cols=28 Identities=29% Similarity=0.955 Sum_probs=24.0
Q ss_pred CcccchhhHHhhhcCC--cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN--KRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~C~iC~~~~~~ 28 (81)
+|+||.+||.+|+... ..|++|...+..
T Consensus 41 ~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 5999999999999654 589999998854
No 74
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=3.5e-05 Score=39.97 Aligned_cols=28 Identities=39% Similarity=0.969 Sum_probs=25.1
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.||.+||.+|+.....||+|+..+..
T Consensus 49 ~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 49 NHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 3899999999999999999999988754
No 75
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.30 E-value=0.0001 Score=35.09 Aligned_cols=26 Identities=54% Similarity=1.258 Sum_probs=23.4
Q ss_pred CcccchhhHHhhhcCCcccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDI 26 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~ 26 (81)
.|.||..|+.+|+.....||+|+..+
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 38999999999999999999998765
No 76
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.29 E-value=0.00011 Score=40.09 Aligned_cols=26 Identities=35% Similarity=0.974 Sum_probs=24.2
Q ss_pred cccchhhHHhhhcCCccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
|.||..||..|+.....||+|+..+.
T Consensus 75 H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 75 HAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred cEECHHHHHHHHHcCCcCcCCCCcce
Confidence 89999999999999999999998864
No 77
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00014 Score=36.91 Aligned_cols=27 Identities=56% Similarity=1.305 Sum_probs=24.3
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.||..|+.+|+.....||+|+..+..
T Consensus 46 H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 46 HEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp EEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 899999999999888899999987754
No 78
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.05 E-value=0.00025 Score=35.28 Aligned_cols=28 Identities=79% Similarity=1.538 Sum_probs=24.8
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.||..|+.+|+.....||+|+..+..
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3899999999999888899999988754
No 79
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00028 Score=37.21 Aligned_cols=28 Identities=39% Similarity=0.988 Sum_probs=24.7
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.||..|+..|+.....||+|...+..
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 62 HHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3899999999999999999999987643
No 80
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.03 E-value=0.00032 Score=38.17 Aligned_cols=28 Identities=25% Similarity=0.605 Sum_probs=24.0
Q ss_pred CcccchhhHHhhh-----cCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWL-----SSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~-----~~~~~C~iC~~~~~~ 28 (81)
-|.||.+||..|+ .....||+|+..+..
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 62 SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3899999999999 456789999998865
No 81
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.03 E-value=0.00017 Score=34.25 Aligned_cols=26 Identities=35% Similarity=0.781 Sum_probs=23.2
Q ss_pred CcccchhhHHhhhcCCcccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDI 26 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~ 26 (81)
.|.||.+|+.+|+.....||+|...+
T Consensus 28 gH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 38999999999998889999998765
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.02 E-value=0.00036 Score=37.34 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=36.7
Q ss_pred CCccccccccccccccccCcCCCCcccCC-CCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPC-MHLFHVECVDQWLSSNKRCPICRVDIETHLN 74 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C-~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 74 (81)
+...|-.|+-.... .+.| .|.+|..|+...+..+..||+|+.++...+.
T Consensus 27 G~~nCKsCWf~~k~-----------LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----------LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCSS-----------EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred CcccChhhccccCC-----------eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 34556677654322 4446 5899999999999999999999999876654
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00024 Score=35.08 Aligned_cols=27 Identities=33% Similarity=0.802 Sum_probs=23.9
Q ss_pred CcccchhhHHhhhcCCccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
-|.|+.+|+.+|+.....||+|...+.
T Consensus 41 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 41 GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 389999999999988889999988764
No 84
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00039 Score=34.64 Aligned_cols=28 Identities=36% Similarity=1.062 Sum_probs=25.2
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+.+|+.+|+.....||+|+..+..
T Consensus 33 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 33 AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3899999999999989999999988765
No 85
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0005 Score=34.58 Aligned_cols=28 Identities=36% Similarity=0.956 Sum_probs=24.8
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.||..|+.+|+.....||+|+..+..
T Consensus 37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 37 KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3899999999999888899999988754
No 86
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.92 E-value=0.00028 Score=35.91 Aligned_cols=28 Identities=39% Similarity=1.053 Sum_probs=25.2
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.||..|+.+|+.....||+|+..+..
T Consensus 37 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 37 NHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3899999999999988999999998765
No 87
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.87 E-value=0.00034 Score=34.84 Aligned_cols=27 Identities=33% Similarity=0.842 Sum_probs=24.6
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.|+.+|+.+|+.....||+|...+..
T Consensus 37 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 37 HVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred ChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 899999999999888999999998754
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.81 E-value=0.00039 Score=33.80 Aligned_cols=28 Identities=32% Similarity=0.770 Sum_probs=24.8
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+.+|+.+|+.....||+|...+..
T Consensus 29 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 29 GHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 3899999999999888899999988754
No 89
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.0012 Score=33.77 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=23.9
Q ss_pred cccchhhHHhhhcCC--cccccccccccc
Q psy14787 2 HLFHVECVDQWLSSN--KRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~C~iC~~~~~~ 28 (81)
|.||..||.+|+... ..||+|...+..
T Consensus 36 h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 36 IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 889999999999876 789999988754
No 90
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.77 E-value=0.00021 Score=39.71 Aligned_cols=26 Identities=35% Similarity=0.974 Sum_probs=0.0
Q ss_pred cccchhhHHhhhcCCccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
|.||..||.+|+.....||+|+..+.
T Consensus 86 H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 86 HAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp --------------------------
T ss_pred ceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 89999999999999999999998764
No 91
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.00064 Score=34.02 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=25.1
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.....|++|+..+..
T Consensus 34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 34 KHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3899999999999988999999998754
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.0014 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.729 Sum_probs=25.2
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.....||+|...+..
T Consensus 35 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 35 LHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4899999999999888899999998865
No 93
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.51 E-value=0.00071 Score=33.40 Aligned_cols=28 Identities=36% Similarity=1.111 Sum_probs=24.7
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.....||+|...+..
T Consensus 25 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 25 LHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3899999999999888899999988754
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.35 E-value=0.013 Score=30.66 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=22.6
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
..+..|.||-..-.. .....--|+.+||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~-------~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-------SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSS-------CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccccc-------ceeccccccccccHhhcccc
Confidence 457789999643211 11112238999999999997
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.0038 Score=30.61 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=23.5
Q ss_pred CcccchhhHHhhh-cCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWL-SSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+ .....||+|...+..
T Consensus 34 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 34 GHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3899999999999 456789999988754
No 96
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.04 E-value=0.0021 Score=31.47 Aligned_cols=26 Identities=35% Similarity=0.810 Sum_probs=21.8
Q ss_pred cccchhhHHhhhcC--Cccccccccccc
Q psy14787 2 HLFHVECVDQWLSS--NKRCPICRVDIE 27 (81)
Q Consensus 2 ~~~~~~~~~~~~~~--~~~C~iC~~~~~ 27 (81)
.+||..|+.+|+.. ...|++|...|.
T Consensus 31 ~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 31 ENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp GSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 58999999999954 578999988763
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.00 E-value=0.0034 Score=35.36 Aligned_cols=27 Identities=41% Similarity=1.075 Sum_probs=24.5
Q ss_pred CcccchhhHHhhhcCCccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
.|.|+..|+..|+.....||+|...+.
T Consensus 72 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 72 AHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 499999999999999999999998774
No 98
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.95 E-value=0.0024 Score=32.64 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.1
Q ss_pred CcccchhhHHhhhcCCccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
.|.|+..|+.+|+.....||+|...+.
T Consensus 34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 34 RHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 489999999999988889999998764
No 99
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.87 E-value=0.0045 Score=32.75 Aligned_cols=28 Identities=29% Similarity=0.736 Sum_probs=24.8
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.....||+|...+..
T Consensus 42 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 42 SHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp CCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3899999999999988999999987753
No 100
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.78 E-value=0.0048 Score=31.15 Aligned_cols=27 Identities=19% Similarity=0.613 Sum_probs=23.8
Q ss_pred cccchhhHHhhhcC-Ccccccccccccc
Q psy14787 2 HLFHVECVDQWLSS-NKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~ 28 (81)
|.|+..||.+|+.. ...||+|...+..
T Consensus 28 H~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 28 QTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp EEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 89999999999986 7789999988754
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.72 E-value=0.0043 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
++..|.||.+.+.. ......+.|+|.|+..|+..
T Consensus 2 ee~~C~~C~~~~~~------~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ------DAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCC------BCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCC------CceEECCcCChHHhHHHCHH
Confidence 45689999975322 11122388999999999998
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.0075 Score=29.93 Aligned_cols=28 Identities=25% Similarity=0.672 Sum_probs=23.4
Q ss_pred CcccchhhHHhhhc---CCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLS---SNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~---~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+. ....||+|...+..
T Consensus 39 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 39 GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 38999999999996 45689999988754
No 103
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.0051 Score=31.60 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=23.8
Q ss_pred CcccchhhHHhhhcCC---cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN---KRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~---~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+... ..||+|...+..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 38 GHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3899999999999764 789999998754
No 104
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.43 E-value=0.0079 Score=32.31 Aligned_cols=28 Identities=36% Similarity=0.929 Sum_probs=25.0
Q ss_pred CcccchhhHHhhhcCCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.....||+|...+..
T Consensus 35 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 35 LHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp CCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4899999999999988999999988754
No 105
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.21 E-value=0.0067 Score=32.28 Aligned_cols=28 Identities=29% Similarity=0.888 Sum_probs=24.2
Q ss_pred CcccchhhHHhhhcCC-cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN-KRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~C~iC~~~~~~ 28 (81)
-|.|+..||.+|+... ..||+|+..+..
T Consensus 42 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 42 SKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp CCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3899999999999876 699999998754
No 106
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.11 E-value=0.0066 Score=30.48 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=22.5
Q ss_pred CcccchhhHHhhhcCC--ccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN--KRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~C~iC~~~~~ 27 (81)
.|.|+..||.+|+... ..||+|...+.
T Consensus 35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 35 GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3899999999999654 68999998653
No 107
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.06 E-value=0.012 Score=27.80 Aligned_cols=22 Identities=32% Similarity=0.981 Sum_probs=17.7
Q ss_pred CcccchhhHHhhh---cCCcccccc
Q psy14787 1 MHLFHVECVDQWL---SSNKRCPIC 22 (81)
Q Consensus 1 ~~~~~~~~~~~~~---~~~~~C~iC 22 (81)
.|.|+.+|+.+|+ .....||+|
T Consensus 34 gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 34 GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3899999999995 456678877
No 108
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.04 E-value=0.016 Score=28.88 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=30.8
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC----CCCCCCcccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN----KRCPICRVDI 69 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~----~~CP~Cr~~~ 69 (81)
.+..|.+|.+. ...+..-.|...||..|+...+... ..|+.|....
T Consensus 11 ~~~~C~vC~~~---------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34569999753 2223334589999999998766442 3699997543
No 109
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.97 E-value=0.014 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=22.7
Q ss_pred CcccchhhHHhhhc-CCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLS-SNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~C~iC~~~~~~ 28 (81)
-|.|..+|+.+|+. ....||+|...+..
T Consensus 27 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 27 GHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 38999999999964 45679999988754
No 110
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.88 E-value=0.01 Score=30.05 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=23.7
Q ss_pred CcccchhhHHhhhcC------Ccccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS------NKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~------~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+.. ...||+|...+..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 38 NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 389999999999876 6789999988754
No 111
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.85 E-value=0.0086 Score=30.13 Aligned_cols=28 Identities=18% Similarity=0.483 Sum_probs=23.6
Q ss_pred CcccchhhHHhhhcC-------Ccccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS-------NKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~-------~~~C~iC~~~~~~ 28 (81)
.|.|...|+.+|+.. ...||+|...+..
T Consensus 31 gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 389999999999976 6689999988754
No 112
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.77 E-value=0.016 Score=30.87 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.2
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.|+..+|.+|+.....||+|...+..
T Consensus 43 htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 43 VTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred eEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 889999999999888899999988754
No 113
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.015 Score=28.10 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=18.3
Q ss_pred CcccchhhHHhhhc---CCcccccc
Q psy14787 1 MHLFHVECVDQWLS---SNKRCPIC 22 (81)
Q Consensus 1 ~~~~~~~~~~~~~~---~~~~C~iC 22 (81)
.|.|+.+|+.+|+. ....||+|
T Consensus 39 gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 39 GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 38999999999997 45578887
No 114
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.55 E-value=0.019 Score=30.76 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=24.2
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.|+..+|.+|+.+...||+|...+..
T Consensus 49 htf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 49 TIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp EEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 789999999999988899999988754
No 115
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.53 E-value=0.012 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.670 Sum_probs=23.7
Q ss_pred CcccchhhHHhhhcC------Ccccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS------NKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~------~~~C~iC~~~~~~ 28 (81)
.|.|+.+|+.+|+.. ...||+|...+..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 38 GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 389999999999866 6789999988764
No 116
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.49 E-value=0.014 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=24.1
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.|+..+|.+|+.+...||+|...+..
T Consensus 34 htf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 34 TVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 889999999999888899999988754
No 117
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.40 E-value=0.018 Score=33.18 Aligned_cols=27 Identities=41% Similarity=0.865 Sum_probs=23.6
Q ss_pred CcccchhhHHhhhcC-Cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS-NKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~ 27 (81)
.|.|+..|+.+|+.. ...||+|...+.
T Consensus 74 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 74 LHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 389999999999986 778999998874
No 118
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.38 E-value=0.0073 Score=31.93 Aligned_cols=49 Identities=22% Similarity=0.452 Sum_probs=31.5
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDIETH 72 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~~~~ 72 (81)
.+..|.+|.+. +.....-.|...||..|+.+-+.. ...||.|...-..+
T Consensus 24 n~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 24 SATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCCcCcCcCCC---------CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 35679999753 222333358889999999765433 23599997654433
No 119
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.31 E-value=0.02 Score=31.40 Aligned_cols=28 Identities=29% Similarity=0.691 Sum_probs=23.2
Q ss_pred CcccchhhHHhhhcCC-cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN-KRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~C~iC~~~~~~ 28 (81)
.|.|+..|+..|+... ..||+|...+..
T Consensus 71 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 71 QHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3899999999999754 489999988754
No 120
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.10 E-value=0.024 Score=30.37 Aligned_cols=28 Identities=32% Similarity=0.784 Sum_probs=23.4
Q ss_pred CcccchhhHHhhhcCC---cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSN---KRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~---~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+... ..||+|...+..
T Consensus 40 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 40 DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3899999999999754 389999988754
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.80 E-value=0.11 Score=28.21 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHH
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVD 53 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~ 53 (81)
....|.+|...-..+..+....-+....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456789997754332222222333445699999999994
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.59 E-value=0.026 Score=30.60 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=24.1
Q ss_pred CcccchhhHHhhhcC-Ccccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS-NKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~~ 28 (81)
.|.|...|+.+|+.. ...||+|...+..
T Consensus 42 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 42 KHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp SCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 389999999999976 6789999998754
No 123
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=93.29 E-value=0.023 Score=27.73 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=23.6
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
|.|++++|.+|+.....||+..+.+..
T Consensus 24 ~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 24 TIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp EEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred cEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 679999999999888889999988754
No 124
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.09 E-value=0.044 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=23.6
Q ss_pred CcccchhhHHhhhcCCc-ccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNK-RCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~C~iC~~~~~~ 28 (81)
.|.|...|+.+|+.... .||+|...+..
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 38999999999997654 89999998754
No 125
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.05 E-value=0.027 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=23.0
Q ss_pred cccchhhHHhhhcCCc-ccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNK-RCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~C~iC~~~~~~ 28 (81)
|.|...|+.+|+.... .||+|...+..
T Consensus 38 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 38 HRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 8999999999997654 89999987754
No 126
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.84 E-value=0.031 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=23.3
Q ss_pred CcccchhhHHhhhcC-Cccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS-NKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~ 27 (81)
-|.|...|+.+|+.. ...||+|...+.
T Consensus 34 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 34 NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 389999999999966 678999999875
No 127
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.71 E-value=0.04 Score=28.48 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=21.7
Q ss_pred CcccchhhHHhhhcC--Ccccccccccc
Q psy14787 1 MHLFHVECVDQWLSS--NKRCPICRVDI 26 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~C~iC~~~~ 26 (81)
.|.|...|+.+|+.. ...||+|...+
T Consensus 33 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 33 GNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 389999999999853 36899999886
No 128
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.67 E-value=0.1 Score=38.08 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=42.5
Q ss_pred cCCccccccccccccccccCcCCCCcccCCC-CcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCM-HLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
.+...|||-.+.+.. |+.++-| +.|=...|.+|+.++.+||.=|.++....
T Consensus 889 P~~F~cPIs~~lM~D---------PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---------PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC---------CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 445669999988866 7788887 58999999999998889999999887543
No 129
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.53 E-value=0.076 Score=25.85 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=28.2
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRV 67 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~ 67 (81)
.+..|.+|.+. ...+..-.|...||..|+..-+.. ...||.|..
T Consensus 10 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 35679999763 111223358889999999864322 235999964
No 130
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.53 E-value=0.089 Score=24.47 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=25.6
Q ss_pred cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcc
Q psy14787 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRV 67 (81)
Q Consensus 18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~ 67 (81)
.|.+|...-.. ...+..-.|...||..|+..-+.. ...||.|+.
T Consensus 2 ~C~vC~~~~~~------~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED------DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC------SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC------CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47777654211 112223358899999999653322 235998854
No 131
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.23 E-value=0.11 Score=28.14 Aligned_cols=25 Identities=28% Similarity=0.748 Sum_probs=21.9
Q ss_pred CcccchhhHHhhhcCCccccccccccc
Q psy14787 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~ 27 (81)
.|.|...|+.+|+. ..||+|...+.
T Consensus 42 gH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 42 EHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp SCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 38999999999987 78999998874
No 132
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.11 E-value=0.074 Score=25.90 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=28.6
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~ 68 (81)
.+..|.+|.+. +..+..-.|...||..|+..-+.. ...||.|...
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35569999753 222333358889999999754322 2359999654
No 133
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.77 E-value=0.066 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=30.4
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI 69 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~ 69 (81)
.+..|.+|... +.....-.|...||..|+..-+.. ...||.|+...
T Consensus 3 ~~~~C~~C~~~---------g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---------GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---------SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---------CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999743 222333358899999998665433 23599997654
No 134
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=89.61 E-value=0.16 Score=33.46 Aligned_cols=28 Identities=32% Similarity=0.922 Sum_probs=24.4
Q ss_pred CcccchhhHHhhhc-CCcccccccccccc
Q psy14787 1 MHLFHVECVDQWLS-SNKRCPICRVDIET 28 (81)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~C~iC~~~~~~ 28 (81)
.|.|+..|+.+|+. ....||+|+..+..
T Consensus 351 GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 351 GHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 38999999999998 67889999998754
No 135
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=89.50 E-value=0.25 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.2
Q ss_pred cccchhhHHhhh-cCCcccccccccccc
Q psy14787 2 HLFHVECVDQWL-SSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~C~iC~~~~~~ 28 (81)
|.|...|+.++. .....||+|+..+..
T Consensus 35 H~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 35 YQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 889999998876 346789999998865
No 136
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.35 E-value=1.4 Score=23.18 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=35.4
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~ 70 (81)
...|.||.+.+....+++. .+..--|+-..|..|..--.+ .++.||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~--FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDL--FVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSB--CCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCE--EEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4679999998765332221 123334777789999865544 3456999999885
No 137
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=88.99 E-value=0.22 Score=28.09 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.6
Q ss_pred cccchhhHHhhhcCC-cccccccccc
Q psy14787 2 HLFHVECVDQWLSSN-KRCPICRVDI 26 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~C~iC~~~~ 26 (81)
|.|...||.+|+... ..||+|...+
T Consensus 51 H~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 51 HRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 899999999999755 4899999865
No 138
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=88.53 E-value=0.17 Score=30.00 Aligned_cols=44 Identities=23% Similarity=0.491 Sum_probs=29.4
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD 68 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~ 68 (81)
+..|.+|.+. +.....-.|...||..|+..-+.. ...||.|+..
T Consensus 2 ~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4568899753 232444568899999999754322 2359999765
No 139
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.29 E-value=0.07 Score=26.88 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=29.3
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~~ 70 (81)
...|.+|...... ..-+..-.|...||..|+..-... ...||.|...+.
T Consensus 18 ~~~C~~C~~~~~~------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDG------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSS------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCC------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3459999765321 011112248889999999754322 235999976553
No 140
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.37 E-value=0.64 Score=24.13 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhC
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSS 58 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~ 58 (81)
....|.+|.+.++. ..-+.... =.|.||.-|-+..+++
T Consensus 14 a~l~CtlC~erLEd------tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLED------THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSS------TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhcc------CceeeCCCccCCeeeccccHHHHHh
Confidence 35679999999876 22111111 3789999999888754
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.11 E-value=0.034 Score=26.97 Aligned_cols=46 Identities=26% Similarity=0.611 Sum_probs=29.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI 69 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~ 69 (81)
.+..|.+|... +.-+..-.|...||..|+..-+.. ...||.|....
T Consensus 4 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999763 222233358899999999753322 23588886543
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=86.48 E-value=0.22 Score=30.44 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=22.3
Q ss_pred cccchhhHHhhhcC-Ccccccccccccc
Q psy14787 2 HLFHVECVDQWLSS-NKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~ 28 (81)
|.|...||.+|+.. ...||+|...+..
T Consensus 228 h~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 228 ITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 89999999999965 3449999988754
No 143
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=86.24 E-value=0.14 Score=33.55 Aligned_cols=27 Identities=26% Similarity=0.897 Sum_probs=22.3
Q ss_pred cccchhhHHhhhcCC-----------cccccccccccc
Q psy14787 2 HLFHVECVDQWLSSN-----------KRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~-----------~~C~iC~~~~~~ 28 (81)
|.||..|+.+|+... ..||.|...+..
T Consensus 336 h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 336 LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 789999999999642 569999987754
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.96 E-value=0.19 Score=27.10 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS 57 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~ 57 (81)
.+..|.+|.+.-+. ..-+.--.|...||..|+.....
T Consensus 6 ~~~~C~~C~~~g~~------~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDL------LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCT------TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCC------cCCeECCCCCCCcChHHhCCccc
Confidence 46679999765211 11123346899999999976653
No 145
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.34 E-value=0.58 Score=25.42 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=22.5
Q ss_pred cccccccccccc-ccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 17 KRCPICRVDIET-HLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 17 ~~C~iC~~~~~~-~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
..|.+|+..-.. .+.+....-+....|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 458888765321 11222233333446999999999864
No 146
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.73 E-value=0.055 Score=25.84 Aligned_cols=43 Identities=28% Similarity=0.649 Sum_probs=26.5
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICR 66 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr 66 (81)
.+..|.+|.+. ...+..-.|...||..|+..-+.. ...||.|.
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC---------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45679999763 222233358889999999753322 22477764
No 147
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.59 E-value=0.082 Score=26.10 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=28.5
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~ 68 (81)
.+..|.+|... +.-+..-.|...||..|+..-+.. ...||.|...
T Consensus 7 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45679999753 221223358889999999753322 2359998653
No 148
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.49 E-value=0.17 Score=30.26 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=29.8
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI 69 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~ 69 (81)
.+..|.+|... +.....-.|...||..|+..-+.. ...||.|+..-
T Consensus 6 ~~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---------GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---------EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---------CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35669999753 111223358899999999765432 23699997653
No 149
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=83.76 E-value=0.33 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=22.7
Q ss_pred cccchhhHHhhhcCC-cccccccccccc
Q psy14787 2 HLFHVECVDQWLSSN-KRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~C~iC~~~~~~ 28 (81)
|.|...|+.+|+... ..||+|...+..
T Consensus 38 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 38 HRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 889999999998654 489999988765
No 150
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.52 E-value=1.1 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=27.2
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-----------CCCCCCCCcc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-----------SNKRCPICRV 67 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-----------~~~~CP~Cr~ 67 (81)
+..|.+|.+- ++-...-.|-.+||..|+.+-+. ....||.|+.
T Consensus 63 ~d~C~vC~~G---------G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG---------GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC---------SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC---------CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4457777543 22122235889999999996542 2346999974
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.37 E-value=0.46 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=24.9
Q ss_pred hhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 7 ECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 7 ~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
+....|..+ ..|.+|...|... ...--.-.||.+|+..|...
T Consensus 3 ~~~p~W~~~-~~C~~C~~~F~~~-----~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 3 KTPADWIDS-DACMICSKKFSLL-----NRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp ----CCCCC-SBCTTTCCBCBTT-----BCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCccC-CcccCCCCccCCc-----cccccCCCCCEEEcccccCC
Confidence 344567764 5899999888541 01111234999999998643
No 152
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.81 E-value=0.57 Score=22.76 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=28.1
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCC
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~C 65 (81)
..|..|+..+.. ........|++.|+.+|=.---+.-..||.|
T Consensus 16 ~~C~~C~~~~~~------~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD------QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT------SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC------CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 459999888743 1113355699999999964322333469987
No 153
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=82.60 E-value=0.49 Score=27.92 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=22.3
Q ss_pred cccchhhHHhhhcC-Ccccccccccccc
Q psy14787 2 HLFHVECVDQWLSS-NKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~ 28 (81)
|.|+..+|..|+.. +..||+|...+..
T Consensus 126 htfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 126 ITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 88999999999965 3469999988754
No 154
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.17 E-value=0.4 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=18.4
Q ss_pred CCCCcccHhhHHHHHhC---CCCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS---NKRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~---~~~CP~Cr~ 67 (81)
.|...||..|+..-... ...||.|+.
T Consensus 47 ~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 58899999998653222 236999964
No 155
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.86 E-value=0.92 Score=24.19 Aligned_cols=27 Identities=37% Similarity=0.925 Sum_probs=23.9
Q ss_pred cccchhhHHhhhcCCcccccccccccc
Q psy14787 2 HLFHVECVDQWLSSNKRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~ 28 (81)
||.--.|+...+.....|+||...+-.
T Consensus 47 HYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 47 HYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred hhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 888889999999999999999988743
No 156
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.84 E-value=1 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.680 Sum_probs=22.3
Q ss_pred cccchhhHHhhhcCC--ccccc--ccccccc
Q psy14787 2 HLFHVECVDQWLSSN--KRCPI--CRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~C~i--C~~~~~~ 28 (81)
|.|...+|.+|+... ..||+ |...+..
T Consensus 202 HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 202 HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 899999999998653 57999 9887643
No 157
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=77.59 E-value=2.2 Score=26.12 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=21.9
Q ss_pred cccchhhHHhhhcCC--cccccccccccc
Q psy14787 2 HLFHVECVDQWLSSN--KRCPICRVDIET 28 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~C~iC~~~~~~ 28 (81)
+.||..|+.+|+... ..||.|......
T Consensus 201 ~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 201 IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 679999999998654 489999887643
No 158
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.18 E-value=1.2 Score=29.11 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=27.1
Q ss_pred ccccccccccccccccCcCCCCcccCCCCc--ccHhhHHHHHhC--CCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHL--FHVECVDQWLSS--NKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~--fh~~Ci~~~~~~--~~~CP~Cr~~~~~ 71 (81)
+.||+=...+.. ......|.|. |=..-+..+..+ ...||+|...+..
T Consensus 216 L~CPlS~~ri~~--------P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTI--------PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSS--------EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceecc--------CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 346665555433 1233459998 555544444433 3469999887753
No 159
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.84 E-value=0.12 Score=27.24 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=28.4
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~ 68 (81)
++..|.||...-.. ...+..-.|...||..|+..=+.. ...||.|...
T Consensus 15 ~~~~C~vC~~~~~~------~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED------DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG------GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC------CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34579999765321 111222358889999999743322 2359998653
No 160
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.89 E-value=0.46 Score=24.73 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=31.0
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--------CCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--------SNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--------~~~~CP~Cr~~~~~ 71 (81)
+..|.+|...-... ....+..-.|...||..|+..-+. ....|+.|......
T Consensus 16 ~~~C~vC~~~~~~~----~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVAS----GNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCT----TCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCC----CCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 56799998642210 011122225889999999975432 23469999765543
No 161
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.16 E-value=1.5 Score=28.86 Aligned_cols=46 Identities=28% Similarity=0.648 Sum_probs=25.8
Q ss_pred ccccccccccccccccCcCCCCcccCCCCc--ccHhhHHHHHhC--CCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHL--FHVECVDQWLSS--NKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~--fh~~Ci~~~~~~--~~~CP~Cr~~~~ 70 (81)
+.||+=...+.. ...-..|.|. |=..-+..+..+ ...||+|...+.
T Consensus 250 L~CPlS~~ri~~--------PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--------PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--------EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--------cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 446655554433 1233459998 544444444332 346999988764
No 162
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=74.31 E-value=0.56 Score=20.25 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.6
Q ss_pred CCcccccccccccc
Q psy14787 15 SNKRCPICRVDIET 28 (81)
Q Consensus 15 ~~~~C~iC~~~~~~ 28 (81)
+...||+|+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 34679999988754
No 163
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.47 E-value=2.5 Score=20.67 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=20.4
Q ss_pred CccccccccccccccccCcCCCC-ccc-CCCCcccHhhHH
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPT-WRL-PCMHLFHVECVD 53 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~-~~~-~C~h~fh~~Ci~ 53 (81)
...|++|...+.. .... ..- .|...||..|+.
T Consensus 8 ~~~C~~C~~p~~~------~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVND------DQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCT------TSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCC------CCCeEecccCccccCchhccC
Confidence 4569999987643 1111 112 588899999984
No 164
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.80 E-value=2 Score=21.86 Aligned_cols=40 Identities=20% Similarity=0.529 Sum_probs=23.6
Q ss_pred hhhcCC--ccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 11 QWLSSN--KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 11 ~~~~~~--~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
.|..+. ..|.+|...|... ...--.-.||.+|+..|....
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~~-----~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSIS-----RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBTT-----BCCEECTTTCCEECSGGGCEE
T ss_pred ccccCccCCcccCcCCcccCc-----cccccCCCCCCEEChHHhCCe
Confidence 566554 3699999988541 011112359999999997653
No 165
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=71.60 E-value=4.6 Score=22.58 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=19.3
Q ss_pred CCCCcccHhhHHHHH-----------hCCCCCCCCccc
Q psy14787 42 PCMHLFHVECVDQWL-----------SSNKRCPICRVD 68 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~-----------~~~~~CP~Cr~~ 68 (81)
.|-..||..|+.+-+ .....|+.|+..
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 588999999998742 122469999553
No 166
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.64 E-value=1.5 Score=21.02 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-----CCCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-----SNKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-----~~~~CP~Cr~~ 68 (81)
++..|++|....... ..-+..-.|...||..|+.--.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~-----~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD-----EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS-----SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC-----CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456799998775320 11011225888999999854321 23459888653
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.03 E-value=1.4 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=18.5
Q ss_pred CcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 38 TWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 38 ~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
+....||..|. .-+.....||.|+.....
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 55667999981 112234569999887543
No 168
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.02 E-value=0.42 Score=24.36 Aligned_cols=26 Identities=46% Similarity=0.864 Sum_probs=17.9
Q ss_pred CCCCcccHhhHHHHHhC----C-CCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS----N-KRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~----~-~~CP~Cr~ 67 (81)
.|...||..|+..-+.. . ..||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 48889999999754432 2 35888864
No 169
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.62 E-value=0.65 Score=23.11 Aligned_cols=26 Identities=46% Similarity=0.847 Sum_probs=18.1
Q ss_pred CCCCcccHhhHHHHHhC-----CCCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS-----NKRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~-----~~~CP~Cr~ 67 (81)
.|...||..|+..=+.. .-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 48899999999743322 235888864
No 170
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.80 E-value=2.1 Score=21.19 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
....|..|.+.+.. .....-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG---------VFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS---------SCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC---------cEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 34578888887643 123345677888775 4778877764
No 171
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.90 E-value=1.3 Score=21.41 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH-------hCCCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-------SSNKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~-------~~~~~CP~Cr~~ 68 (81)
++..|.+|....... ....+..-.|...||..|+..-+ .....|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~----~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEA----PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBT----TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCC----CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456799998653210 01112233588999999987532 123458888554
No 172
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=67.79 E-value=1.8 Score=21.59 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--CCCCCCCCcc
Q psy14787 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--SNKRCPICRV 67 (81)
Q Consensus 11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--~~~~CP~Cr~ 67 (81)
....++..|.||.+.-+.. ....+..-.|...||..|+..-.. ....||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~----~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQN----SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCS----SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCC----CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3345577899997642110 011122235888999999974321 1235887754
No 173
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.98 E-value=1 Score=27.26 Aligned_cols=41 Identities=20% Similarity=0.587 Sum_probs=25.7
Q ss_pred HHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 9 VDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 9 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
.+.|.. +..|.+|...|... ...-....||.+||..|....
T Consensus 158 ~p~W~~-~~~C~~C~~~F~~~-----~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 158 APDWVD-AEECHRCRVQFGVM-----TRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCCCC-CSBCTTTCCBCBTT-----BCCEECTTTCCEECTTTCCEE
T ss_pred cccccc-CCCCcCcCCCCCcc-----ccccccCCCcCEeChhhcCCc
Confidence 345654 45899999888641 111122359999999987543
No 174
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.98 E-value=0.81 Score=23.26 Aligned_cols=26 Identities=27% Similarity=0.728 Sum_probs=17.8
Q ss_pred CCCCcccHhhHHHHHhC-----CCCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS-----NKRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~-----~~~CP~Cr~ 67 (81)
.|...||..|+..-+.. ...||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 58889999999743322 235888853
No 175
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.21 E-value=3.2 Score=20.23 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=20.9
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|+.|.+.+.. .....-+..||..|. .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~---------~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---------RVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---------CCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC---------eeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 357777766543 222334666777664 3666666554
No 176
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.18 E-value=5.5 Score=16.27 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=17.1
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhh
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVEC 51 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~C 51 (81)
..|+.|...+.. .+.. ..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~------~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYP------TEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCG------GGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEec------ceeE--EECCeEecccC
Confidence 469999887654 2222 22467788877
No 177
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.01 E-value=2.5 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=31.4
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHH------Hh-----CCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW------LS-----SNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~------~~-----~~~~CP~Cr~~~~ 70 (81)
+..|+||...+...... ..-+..-.|...||..|..-- +. ....||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~--~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYE--SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTT--CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccC--CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 45699999887651100 000112248899999998421 11 1457999987543
No 178
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.74 E-value=1.5 Score=26.91 Aligned_cols=26 Identities=46% Similarity=0.847 Sum_probs=16.3
Q ss_pred CCCCcccHhhHHHHHhC-----CCCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS-----NKRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~-----~~~CP~Cr~ 67 (81)
.|...||..|+..=+.. ...||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 58899999999854322 235999854
No 179
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.62 E-value=12 Score=20.00 Aligned_cols=30 Identities=0% Similarity=-0.300 Sum_probs=22.0
Q ss_pred CCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 43 CMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 43 C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
=+..|+..|..+.+.....|..|...+...
T Consensus 53 ~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 53 SGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp TTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 456688888887776555799998887643
No 180
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.29 E-value=3.1 Score=22.23 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=29.6
Q ss_pred CccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHH----h------CCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWL----S------SNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~----~------~~~~CP~Cr~~~~ 70 (81)
...|++|...+... ..-+..- .|...||..|+.--. . ....||.|+....
T Consensus 3 ~~~C~iC~~p~~~~-----~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-----QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTT-----SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCC-----CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35699999876431 1111111 588899999984211 0 2346999976544
No 181
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.16 E-value=3.4 Score=20.92 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|..|.+.+.. .....-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG---------AVVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS---------CCEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc---------cEEEECCceECccCC--------EecCCCCCCCC
Confidence 3468888877643 223335677888774 48888777653
No 182
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.41 E-value=1.8 Score=26.00 Aligned_cols=39 Identities=21% Similarity=0.536 Sum_probs=24.2
Q ss_pred HhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
..|.. +..|.+|...|... ...-..-.||.+||..|...
T Consensus 156 ~~W~~-~~~C~~C~~~F~~~-----~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 156 PNWAD-GRVCHRCRVEFTFT-----NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCC-CSBCTTTCCBCCSS-----SCCEECTTTCCEECSTTSCE
T ss_pred ccCCC-CCccCCCCCccCCc-----ccccccCCcCCEEChHHhCC
Confidence 34554 46899998887541 01111234999999988654
No 183
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.33 E-value=2.3 Score=20.44 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=21.0
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|..|.+.+.. .....-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG---------RVIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS---------CCEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc---------eEEEECcccccccCC--------EeCCCCCcCCC
Confidence 3457777766532 112224556776664 36667666543
No 184
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.19 E-value=4.8 Score=19.93 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=24.1
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|+.|.+.+.. .....-+..||..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~---------~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIIDE---------QPLIFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCCS---------CCCCCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEecc---------eEEEECcceeCCCCC--------EeCCCCCccCC
Confidence 3468888876642 222334667887774 47778777653
No 185
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.06 E-value=4.6 Score=22.24 Aligned_cols=40 Identities=20% Similarity=0.543 Sum_probs=25.0
Q ss_pred hhhcCC--ccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 11 QWLSSN--KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 11 ~~~~~~--~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
.|..+. ..|.+|...|... ...-..-.||.+||..|....
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~-----~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVT-----VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSS-----SCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCCCCCCcCcCCccccc-----cccccCCCCCeEEChHHhCCc
Confidence 466543 4699999888541 111112359999999997543
No 186
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.95 E-value=5.1 Score=20.36 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=25.8
Q ss_pred HhhhcC--CccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 10 DQWLSS--NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 10 ~~~~~~--~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
..|..+ ...|.+|...|... ...--.-.||.+|+..|....
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~~-----~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTTT-----VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCTT-----SCCEECTTTCCEECTGGGCCE
T ss_pred CccccCCCCCCCcCcCCccccc-----hhcccccCCCcEEChHHhCCe
Confidence 356644 35699999988641 011112349999999997653
No 187
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.11 E-value=5.4 Score=20.59 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=29.6
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--CCCCCCCCcccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--SNKRCPICRVDI 69 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--~~~~CP~Cr~~~ 69 (81)
.++..|.||...-+... ...+..-.|...||..|+..-.. ....||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~----~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNS----NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSE----EEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCC----CCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567999986421100 01122235888999999975321 233588886543
No 188
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.98 E-value=4 Score=20.75 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=24.6
Q ss_pred HhhhcCC--ccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 10 DQWLSSN--KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 10 ~~~~~~~--~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
..|..+. ..|.+|...|... ...--.-.||.+|+..|...
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~-----~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVL-----KKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSS-----SCCEECSSSCCEECTTTSCE
T ss_pred CccccCCCCCcCcCcCCccccc-----hhhhhhcCCCcEEChhhcCC
Confidence 3566543 4699999888541 00011234999999999654
No 189
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.88 E-value=5.5 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=25.7
Q ss_pred HhhhcC--CccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 10 DQWLSS--NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 10 ~~~~~~--~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
..|..+ ...|.+|...|... ...-....||.+|+..|....
T Consensus 12 p~W~~d~~~~~C~~C~~~F~~~-----~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 12 PTWVPDSEAPNCMNCQVKFTFT-----KRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSS-----SCCEECTTTCCEECGGGSCEE
T ss_pred CcCcccccCCcCcCCCCcccch-----hhCccccCCCCEECCcccCCe
Confidence 345543 34699999887541 111122359999999997654
No 190
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=58.35 E-value=2.9 Score=19.77 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=23.4
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|+.|.+.+.. .....-+..||..|. .|..|+..+..
T Consensus 6 ~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEG---------RVVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCS---------CEECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEecc---------eEEEECccccccCcC--------EECCCCCCCCC
Confidence 457888776642 223334667887774 37778776653
No 191
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=57.97 E-value=13 Score=19.03 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=23.2
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
...|.+|.+...... ........-|+-.+|.+|+...
T Consensus 38 ~s~C~vC~k~c~s~~---~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 38 SAKCTVCDKTCGSVL---RLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TCBCSSSCCBCCCTT---TCCCEEESSSCCEECHHHHHHC
T ss_pred CCEeCCCCCEeCCcc---CCCCCCCcccChhHHHHHHHhc
Confidence 347899987654300 0112233459999999999875
No 192
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=57.72 E-value=2.7 Score=19.39 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=15.9
Q ss_pred CCCCcccHhhHHHHH----hCCCCCCCCc
Q psy14787 42 PCMHLFHVECVDQWL----SSNKRCPICR 66 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~----~~~~~CP~Cr 66 (81)
.|..-||..|+.--. .....||.|+
T Consensus 24 ~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 24 GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCccCcccccCCCccccCCCCEECCCCC
Confidence 477789999975321 2345688874
No 193
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.50 E-value=3.3 Score=19.79 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=20.5
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|..|.+.+.. .....-+..||..|. .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT---------GGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS---------SEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc---------ceEEECccccCCCCC--------ccCCCCCcCC
Confidence 457777766543 112234566776664 3666766654
No 194
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.00 E-value=4.1 Score=20.07 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=22.8
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|..|.+.+.. .....-+..||..|. .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTG---------PFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCS---------CCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcCc---------eEEEECCceeccccC--------CccCCCCccC
Confidence 358888776642 222334667787764 3778877774
No 195
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.96 E-value=6.2 Score=22.60 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCcc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRV 67 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~ 67 (81)
++..|.+|...|.-.. ........|.+.+|..|-. |.... ..|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~----~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLL----NSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCS----SCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCcccccc----CCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999999875411 2233445699999999873 32221 23666644
No 196
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.80 E-value=4.4 Score=20.91 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
...|.+|...|... ...--...||.+|+..|...
T Consensus 9 ~~~C~~C~~~F~~~-----~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF-----KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS-----SCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc-----cccccCCCCCCEEChhHcCC
Confidence 45699998887541 00011234899999998754
No 197
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.76 E-value=6.1 Score=19.67 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=25.0
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
....|..|.+.+.. .+.+ ..-+..||..|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~------~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYV------LERL--CVNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCT------TTBC--CBTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCccc------ceEE--EECCCeeCCCcC--------EEcCCCCCcCC
Confidence 34579999887643 1212 224667888774 37777766653
No 198
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.44 E-value=2.2 Score=21.66 Aligned_cols=38 Identities=18% Similarity=0.426 Sum_probs=22.6
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
...|..|.+.+.. .....-+..||..|+ .|-.|+..|.
T Consensus 25 ~~~C~~C~~~I~~---------~~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRG---------PFLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCS---------CEEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEecc---------eEEEECCccccccCC--------ccCCCCCCCC
Confidence 3458888776632 122234667777664 3777777665
No 199
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=55.28 E-value=5.4 Score=21.40 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=9.9
Q ss_pred ccHhhHHHHHh
Q psy14787 47 FHVECVDQWLS 57 (81)
Q Consensus 47 fh~~Ci~~~~~ 57 (81)
||..|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999974
No 200
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.18 E-value=5.5 Score=21.35 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=10.0
Q ss_pred ccHhhHHHHHh
Q psy14787 47 FHVECVDQWLS 57 (81)
Q Consensus 47 fh~~Ci~~~~~ 57 (81)
||..|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999975
No 201
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.02 E-value=4 Score=19.55 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=23.4
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|..|.+.+.. .. .....-+..||..|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~------~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMP------GS-RKLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCS------SS-CEECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCcccc------Cc-cEEEECccccCcccC--------eECCCCCcCCC
Confidence 468888777653 11 222234667887774 37777766643
No 202
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.86 E-value=3 Score=20.05 Aligned_cols=40 Identities=28% Similarity=0.484 Sum_probs=23.9
Q ss_pred CccccccccccccccccCcCCCCcccC--CCCcccHhhHHHHHhC
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLP--CMHLFHVECVDQWLSS 58 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~--C~h~fh~~Ci~~~~~~ 58 (81)
...||-|...++... .-..+.... |++.|+..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~---GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDG---GCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCC---SCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCC---CCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 356999988876511 011122222 7788888888777644
No 203
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.58 E-value=0.63 Score=24.08 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=8.0
Q ss_pred cccccccccccc
Q psy14787 17 KRCPICRVDIET 28 (81)
Q Consensus 17 ~~C~iC~~~~~~ 28 (81)
..||.|...+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 467888776653
No 204
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.56 E-value=3.5 Score=19.68 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=20.8
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|..|.+.+.. .....-+..||..|. .|..|+..+.
T Consensus 6 ~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS---------GGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT---------TCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc---------ceEEECccccccCcC--------EECCCCCCCC
Confidence 457777766532 112224556776664 3777766664
No 205
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=53.14 E-value=8.2 Score=20.76 Aligned_cols=51 Identities=10% Similarity=0.192 Sum_probs=27.6
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
.+-..|..|...|.. ........=+..|+..|..+.+.....|..|...+.
T Consensus 27 ~~CF~C~~C~~~L~~------~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGE------VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSS------TTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCcccc------CCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 444567777666531 001112223556777777665544336778877665
No 206
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=52.45 E-value=0.47 Score=25.43 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=25.0
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
+..||+|..+++. . =++.++..|-..+ .....||.|..++...
T Consensus 32 ~~~CP~Cq~eL~~------~-------g~~~hC~~C~~~f-~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQ------D-------NGHARCRSCGEFI-EMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEE------E-------TTEEEETTTCCEE-EEEEECTTTCSBCEEE
T ss_pred cccCccCCCccee------c-------CCEEECccccchh-hccccCcchhhHHHHH
Confidence 3789999988754 1 1222344453321 2233599998887643
No 207
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=51.99 E-value=4.2 Score=15.45 Aligned_cols=15 Identities=27% Similarity=0.962 Sum_probs=11.4
Q ss_pred CcccchhhHHhhhcC
Q psy14787 1 MHLFHVECVDQWLSS 15 (81)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (81)
||..++..|.+|+.+
T Consensus 2 ~~~~qvDSV~rWmeD 16 (22)
T 3ro3_B 2 LHFMQVDSVQRWMED 16 (26)
T ss_pred cchhhhHHHHHHHHH
Confidence 577788888888764
No 208
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.19 E-value=4.5 Score=20.04 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=20.6
Q ss_pred ccccccccccccccccCcCCCCcccCC-CCcccHhhHHHH
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPC-MHLFHVECVDQW 55 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C-~h~fh~~Ci~~~ 55 (81)
.-|.||.++- ....+.| +-.||..|....
T Consensus 9 pWC~ICneDA----------tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNEDA----------TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSCC----------CEEETTTTSEEECSSHHHHH
T ss_pred CeeEEeCCCC----------eEEecCCCCceehHHHHHHH
Confidence 3488997762 1455668 778999998775
No 209
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.95 E-value=4.8 Score=22.53 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ 54 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~ 54 (81)
+...|.+|...+.-.. ........|.+.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~----~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLG----SASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTS----CCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCccccc----CCCCCCCCCCcccccccCCc
Confidence 4567999999873200 11223455888888888653
No 210
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=50.91 E-value=5.2 Score=19.80 Aligned_cols=25 Identities=36% Similarity=0.885 Sum_probs=17.0
Q ss_pred CC-CcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787 43 CM-HLFHVECVDQWLSS----NKRCPICRVDI 69 (81)
Q Consensus 43 C~-h~fh~~Ci~~~~~~----~~~CP~Cr~~~ 69 (81)
|. ..||..|+. +.. ...||.|+...
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 55 589999997 322 23599997653
No 211
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.64 E-value=5.4 Score=19.52 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=22.8
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|..|.+.+.. .....-+..||..|. .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~---------~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ---------GGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS---------CCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC---------cEEEECCchhhhhhC--------CcccCCCcCC
Confidence 457777776643 123335667887774 4777877764
No 212
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.60 E-value=6.9 Score=19.56 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=19.8
Q ss_pred CCCCcccHhhHHHHHh-----CCCCCCCCccccc
Q psy14787 42 PCMHLFHVECVDQWLS-----SNKRCPICRVDIE 70 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~-----~~~~CP~Cr~~~~ 70 (81)
.|...||..|+.--.. ....||.|+....
T Consensus 32 ~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 32 LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4888999999853221 2346999987543
No 213
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.98 E-value=5.8 Score=19.51 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|+.|.+.+.. .+ .....-+..||..|. .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~------~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVA------GD-QNVEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCS------SS-CEEECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCccccc------Cc-eEEEECccccccccC--------chhhCCCccCC
Confidence 468888877653 11 122334667887774 47788777653
No 214
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.63 E-value=3.7 Score=20.29 Aligned_cols=38 Identities=18% Similarity=0.524 Sum_probs=22.5
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
...|+.|.+.+.. .....-+..||..|. .|..|+..+.
T Consensus 15 ~~~C~~C~~~I~~---------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD---------RILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS---------CCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc---------eeEEECCccccHHhc--------CcccCCCccC
Confidence 4567777766532 122234566777664 4777777665
No 215
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.49 E-value=8.3 Score=18.95 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=23.1
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|..|.+.+.. .. .....-+..||..|. .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~------~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGH------DS-RELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCS------SC-CBCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCcccc------Cc-EEEEeCCccccccCC--------eecCCCCccC
Confidence 368888777652 11 122224667887774 3777777665
No 216
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.18 E-value=4.2 Score=20.05 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=22.6
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|+.|.+.+.. .....-+..||..|. .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~---------~~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG---------EVVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS---------CCEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc---------ceEEECCceeCccCC--------ccccCCCCCC
Confidence 368888776542 122234667887774 3777777664
No 217
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.90 E-value=3.6 Score=20.04 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=24.3
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|+.|.+.+.. .+ ....-+..||..|. .|..|+..|..
T Consensus 9 ~~~C~~C~~~I~~------~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYF------AE--KVSSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCT------TT--EEEETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeEC------Ce--EEEECCeEeeCCCC--------CCCCCCCccCC
Confidence 4568888887653 11 12234667887774 37777777653
No 218
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.45 E-value=10 Score=18.70 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=18.6
Q ss_pred CCCCcccHhhHHHHH---------hCCCCCCCCccc
Q psy14787 42 PCMHLFHVECVDQWL---------SSNKRCPICRVD 68 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~---------~~~~~CP~Cr~~ 68 (81)
.|...||..|+.--. .....||.|+..
T Consensus 35 ~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 35 RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 488899999984221 235579999654
No 219
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.23 E-value=5.6 Score=19.48 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCCcc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPICRV 67 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~Cr~ 67 (81)
+...| ||...... ..-+..-.|...||..|+.--.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~------~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG------RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT------CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCC------CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34557 88765321 00011224888999999864321 1234777753
No 220
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=44.74 E-value=2.5 Score=20.65 Aligned_cols=45 Identities=7% Similarity=-0.032 Sum_probs=21.8
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccH-hhHHHHHhCCCCCCCCccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHV-ECVDQWLSSNKRCPICRVD 68 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~-~Ci~~~~~~~~~CP~Cr~~ 68 (81)
.+-..|..|...|.. . .....=+..|+. .|..+. .+..|-.|...
T Consensus 25 ~~CF~C~~C~~~L~~------~--~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 25 RPCLKCEKCGKTLTS------G--GHAEHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TTTCBCTTTCCBCCT------T--TEEEETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCCCccccCccCCC------C--ceECcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 334556666665543 1 111223455666 466543 34456666543
No 221
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.48 E-value=6.2 Score=19.59 Aligned_cols=40 Identities=28% Similarity=0.621 Sum_probs=24.7
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
....|..|.+.+.. .+. ...-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~------~~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKH------GQS--LLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSS------SCC--EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCC------CeE--EEECCcccccccC--------CcCcCCCCcC
Confidence 35568888887643 221 2224667887774 4778877665
No 222
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.46 E-value=8.4 Score=21.18 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=27.0
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~ 68 (81)
...|..|...|... ...-....||.+|+..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~-----~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANT-----ARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSG-----GGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccc-----cccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 45699998887541 0111123599999999976544334446666443
No 223
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=44.45 E-value=12 Score=19.21 Aligned_cols=34 Identities=21% Similarity=0.563 Sum_probs=20.8
Q ss_pred Cccccccccc-cccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 16 NKRCPICRVD-IETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 16 ~~~C~iC~~~-~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
.+.|.||.+. ... -..-....|...||..|..+-
T Consensus 17 ~l~C~iC~~~~~GA------ciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKGVGA------SIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCCSSC------EEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCCCcE------eEecCCCCCCCcCcHHHHHHC
Confidence 5679999643 111 000122348899999998764
No 224
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.35 E-value=4.7 Score=19.75 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=21.6
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|+.|.+.+.. .....-+..||..|. .|..|+..+..
T Consensus 16 ~~C~~C~~~I~~---------~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE---------NYLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS---------SCEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc---------eeEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 357777766542 112224556776664 37777777653
No 225
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=44.14 E-value=1.6 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=12.6
Q ss_pred CCCCcccHhhHHHH
Q psy14787 42 PCMHLFHVECVDQW 55 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~ 55 (81)
.|++.|+..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999999887
No 226
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=43.07 E-value=8.2 Score=15.71 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q psy14787 60 KRCPICRVDIET 71 (81)
Q Consensus 60 ~~CP~Cr~~~~~ 71 (81)
..||+|+..+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 459999887653
No 227
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=42.24 E-value=9 Score=20.59 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=19.1
Q ss_pred cCCccccccccccccccccCcCCCCccc--CCCCcccHhhHH
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRL--PCMHLFHVECVD 53 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~fh~~Ci~ 53 (81)
..+..|.+|.+. ++-+..- .|...||..|+.
T Consensus 13 ~~~~~C~~C~~~---------G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 13 MHEDYCFQCGDG---------GELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SSCSSCTTTCCC---------SEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCcCCCC---------CcEeEECCCCCCcccccccCc
Confidence 446679999742 1111111 477899999987
No 228
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.24 E-value=15 Score=17.43 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=23.9
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
...|..|.+.+... ........-+..||..|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~-----~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGL-----GGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCS-----SSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCC-----CCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 34688887766420 011222335677887774 4777777664
No 229
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.84 E-value=8.5 Score=18.58 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=24.5
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
...|+.|.+.+.. .+ .....-+..||..|. .|-.|+..+..
T Consensus 11 ~~~C~~C~~~I~~------~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAP------AE-KIVNSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCS------TT-TCEEETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCC------Cc-eEEEeCccEeccccC--------eECCCCCCCCC
Confidence 4568888887643 11 112234667887774 47777776654
No 230
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.50 E-value=6.1 Score=18.84 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=22.2
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
..|..|.+.+.. .+ .....-+..||..|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~------~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMP------GT-RKMEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCS------SS-CEEEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccC------Cc-eEEEECcCeecccCC--------cccccCCccCC
Confidence 457778776643 11 112224556777664 37777666543
No 231
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=40.42 E-value=17 Score=21.01 Aligned_cols=17 Identities=41% Similarity=0.811 Sum_probs=14.4
Q ss_pred CCCCcccHhhHHHHHhC
Q psy14787 42 PCMHLFHVECVDQWLSS 58 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~ 58 (81)
.|...|+..||...+..
T Consensus 98 ~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTCCEEEHHHHHHHTCT
T ss_pred CCCCchhHHHHHHhcCH
Confidence 58889999999998754
No 232
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.26 E-value=12 Score=18.81 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=7.3
Q ss_pred Cccccccccccc
Q psy14787 16 NKRCPICRVDIE 27 (81)
Q Consensus 16 ~~~C~iC~~~~~ 27 (81)
...|..|.+.+.
T Consensus 15 ~~~C~~C~~~I~ 26 (91)
T 2d8y_A 15 RETCVECQKTVY 26 (91)
T ss_dssp SCBCTTTCCBCC
T ss_pred CCcCccCCCccC
Confidence 345777766654
No 233
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.90 E-value=9.5 Score=19.91 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=16.9
Q ss_pred CC-CcccHhhHHHHHh--CCCCCCCCcccc
Q psy14787 43 CM-HLFHVECVDQWLS--SNKRCPICRVDI 69 (81)
Q Consensus 43 C~-h~fh~~Ci~~~~~--~~~~CP~Cr~~~ 69 (81)
|. ..||..|+.--.. ....||.|+...
T Consensus 57 C~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 57 CSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 54 5799999972111 123599997643
No 234
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.29 E-value=20 Score=23.72 Aligned_cols=26 Identities=31% Similarity=0.712 Sum_probs=19.5
Q ss_pred CCCCcccHhhHHHHHhC----------CCCCCCCcc
Q psy14787 42 PCMHLFHVECVDQWLSS----------NKRCPICRV 67 (81)
Q Consensus 42 ~C~h~fh~~Ci~~~~~~----------~~~CP~Cr~ 67 (81)
.|...||..||.+.+.. ...|=+|.-
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 68899999999998743 235777754
No 235
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=38.92 E-value=12 Score=20.06 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=6.3
Q ss_pred cccccccccc
Q psy14787 18 RCPICRVDIE 27 (81)
Q Consensus 18 ~C~iC~~~~~ 27 (81)
.|..|.+.+.
T Consensus 10 ~C~~C~~~I~ 19 (123)
T 2l3k_A 10 LCASCDKRIR 19 (123)
T ss_dssp CCSSSSCCCC
T ss_pred cccCCCCeec
Confidence 5777766554
No 236
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.65 E-value=3.3 Score=19.78 Aligned_cols=23 Identities=39% Similarity=0.949 Sum_probs=14.8
Q ss_pred CC-CcccHhhHHHHHhC----CCCCCCCcc
Q psy14787 43 CM-HLFHVECVDQWLSS----NKRCPICRV 67 (81)
Q Consensus 43 C~-h~fh~~Ci~~~~~~----~~~CP~Cr~ 67 (81)
|. ..||..|+. +.. ...||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44 579999997 322 224888753
No 237
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.61 E-value=9.2 Score=20.19 Aligned_cols=13 Identities=23% Similarity=0.986 Sum_probs=10.0
Q ss_pred CCCCCCCcccccc
Q psy14787 59 NKRCPICRVDIET 71 (81)
Q Consensus 59 ~~~CP~Cr~~~~~ 71 (81)
+..||+|...+..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4569999988764
No 238
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.12 E-value=4.1 Score=26.03 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=29.0
Q ss_pred cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccc
Q psy14787 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68 (81)
Q Consensus 14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~ 68 (81)
+....||+|...-....-...+. .-.=.+.+|..|-..|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~---~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGK---ETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC-------CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCC---CCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 34578999987543211110000 00012346667777887777789999765
No 239
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.08 E-value=13 Score=14.82 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=8.9
Q ss_pred CCCCCccccccc
Q psy14787 61 RCPICRVDIETH 72 (81)
Q Consensus 61 ~CP~Cr~~~~~~ 72 (81)
.||+|...+...
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 599998776644
No 240
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.99 E-value=17 Score=17.56 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=8.6
Q ss_pred cCCccccccccc
Q psy14787 14 SSNKRCPICRVD 25 (81)
Q Consensus 14 ~~~~~C~iC~~~ 25 (81)
.+...|.||+.-
T Consensus 7 ~d~~~C~iC~KT 18 (62)
T 2a20_A 7 GDAPTCGICHKT 18 (62)
T ss_dssp SCCCCCSSSSCS
T ss_pred CCcchhhhhccc
Confidence 445679999763
No 241
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.80 E-value=15 Score=19.38 Aligned_cols=15 Identities=7% Similarity=-0.334 Sum_probs=9.2
Q ss_pred CCcccHhhHHHHHhC
Q psy14787 44 MHLFHVECVDQWLSS 58 (81)
Q Consensus 44 ~h~fh~~Ci~~~~~~ 58 (81)
+..|+..|..+.+..
T Consensus 52 g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 52 GRKLCRRDYLRLGGS 66 (114)
T ss_dssp TBCCCHHHHHHHHTS
T ss_pred CeeechHHHHHHhCc
Confidence 556777777665543
No 242
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.34 E-value=22 Score=17.98 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=19.7
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhH
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECV 52 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci 52 (81)
.+..|+.|.+.|.-.. ........|.|..+.+|-
T Consensus 24 ~~r~CarC~~~LG~l~----~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 24 SDRTCARCQESLGRLS----PKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCBCSSSCCBCSSSC----TTTSEETTTTEECCTTSE
T ss_pred CccchhhhCccccccc----cCCCcCcccChhhccccc
Confidence 3557999988874310 112223347787777764
No 243
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.24 E-value=14 Score=18.16 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=11.2
Q ss_pred hCCCCCCCCccccccc
Q psy14787 57 SSNKRCPICRVDIETH 72 (81)
Q Consensus 57 ~~~~~CP~Cr~~~~~~ 72 (81)
..--.||.|+.++...
T Consensus 8 LeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 8 LEVLACPKDKGPLRYL 23 (67)
T ss_dssp TCCCBCTTTCCBCEEE
T ss_pred HHHhCCCCCCCcCeEe
Confidence 3344699999987654
No 244
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.90 E-value=5.7 Score=19.54 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=7.1
Q ss_pred Cccccccccccc
Q psy14787 16 NKRCPICRVDIE 27 (81)
Q Consensus 16 ~~~C~iC~~~~~ 27 (81)
...|..|.+.+.
T Consensus 7 ~~~C~~C~~~I~ 18 (81)
T 1a7i_A 7 GNKCGACGRTVY 18 (81)
T ss_dssp -CBCSSSCCBCS
T ss_pred CCcCcCcCcccc
Confidence 345777776653
No 245
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.13 E-value=9.6 Score=24.74 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=0.0
Q ss_pred HhhhcC--CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-------CCCCCCCcccc
Q psy14787 10 DQWLSS--NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-------NKRCPICRVDI 69 (81)
Q Consensus 10 ~~~~~~--~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-------~~~CP~Cr~~~ 69 (81)
+.|..+ ...|.+|...|... ...-....||.+||..|....... ...|-.|-..+
T Consensus 367 p~w~~~~~~~~c~~c~~~f~~~-----~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 367 PTLVPVTHVMMCMNCGCDFSLT-----LRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CcCCCcccCCcCCCcCCCCCCc-----chhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 355543 35699998887541 111223459999999998765311 12376675443
No 246
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.46 E-value=15 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=9.3
Q ss_pred CCCCCccccccc
Q psy14787 61 RCPICRVDIETH 72 (81)
Q Consensus 61 ~CP~Cr~~~~~~ 72 (81)
.||.|+..+...
T Consensus 10 ~CP~ck~~L~~~ 21 (68)
T 2hf1_A 10 VCPLCKGPLVFD 21 (68)
T ss_dssp BCTTTCCBCEEE
T ss_pred ECCCCCCcCeEe
Confidence 599999887654
No 247
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=31.20 E-value=17 Score=17.90 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=9.7
Q ss_pred CCCCCCccccccc
Q psy14787 60 KRCPICRVDIETH 72 (81)
Q Consensus 60 ~~CP~Cr~~~~~~ 72 (81)
-.||.|+..+...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2jr6_A 9 LVCPVTKGRLEYH 21 (68)
T ss_dssp CBCSSSCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 3599999887654
No 248
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.84 E-value=11 Score=17.79 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=25.6
Q ss_pred CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72 (81)
Q Consensus 16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~ 72 (81)
...|..|.+.+.. .+. ....-+..||..|. .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~------~e~-~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAP------AEK-IVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCT------TCE-EEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccC------Cce-EEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4568888887653 111 11234566887775 488887776543
No 249
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.88 E-value=9.4 Score=17.59 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=16.2
Q ss_pred ccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73 (81)
Q Consensus 40 ~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~ 73 (81)
.+.||+.|-.+=+... .+-.||.|...+....
T Consensus 6 C~rCg~~fs~~el~~l--P~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL--PGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCCTTTTCCCCCSCCC--SSSCCTTTCCSCEECC
T ss_pred eeccCCCccHHHHhhC--CCcccCccCcEEEEEe
Confidence 4456655543222111 2335999987765443
No 250
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.52 E-value=17 Score=17.98 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.1
Q ss_pred CCCCCCcccccccc
Q psy14787 60 KRCPICRVDIETHL 73 (81)
Q Consensus 60 ~~CP~Cr~~~~~~~ 73 (81)
-.||.|+..+....
T Consensus 9 L~CP~ck~~L~~~~ 22 (70)
T 2js4_A 9 LVCPVCKGRLEFQR 22 (70)
T ss_dssp CBCTTTCCBEEEET
T ss_pred eECCCCCCcCEEeC
Confidence 35999998876543
No 251
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.32 E-value=13 Score=21.49 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=14.3
Q ss_pred CCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 44 MHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 44 ~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
+..||..|..+.+.....|..|...+.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 344666665554432224666666554
No 252
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.05 E-value=15 Score=17.67 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=22.6
Q ss_pred ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
..|+.|.+.+... +.......-+..||..|. .|..|+..|.
T Consensus 6 ~~C~~C~~~I~~~-----g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGL-----TGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTT-----TTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCC-----CCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 4578887766420 011122234567887774 3777766664
No 253
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.46 E-value=15 Score=18.15 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=4.9
Q ss_pred CCCCCccccc
Q psy14787 61 RCPICRVDIE 70 (81)
Q Consensus 61 ~CP~Cr~~~~ 70 (81)
.||.|+..+.
T Consensus 10 ~CP~ck~~L~ 19 (69)
T 2pk7_A 10 ACPICKGPLK 19 (69)
T ss_dssp CCTTTCCCCE
T ss_pred eCCCCCCcCe
Confidence 3555555443
No 254
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.84 E-value=39 Score=17.84 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=17.2
Q ss_pred CCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787 43 CMHLFHVECVDQWLSSNKRCPICRVDIET 71 (81)
Q Consensus 43 C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~ 71 (81)
=+..|+..|..+. ....|..|...+..
T Consensus 49 ~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 49 NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3556777776543 34568888877763
No 255
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.77 E-value=3.4 Score=21.09 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=20.7
Q ss_pred ccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW 55 (81)
Q Consensus 19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~ 55 (81)
||-|...+.... ....+....|++.|+..|-..|
T Consensus 28 CP~C~~~~~~~~---~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYER---EQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCC---SCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecC---CCCceEeCCCCCccccccCCch
Confidence 887766553311 0111223349999999998887
No 256
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.69 E-value=23 Score=16.60 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=9.6
Q ss_pred CCCCCCccccccc
Q psy14787 60 KRCPICRVDIETH 72 (81)
Q Consensus 60 ~~CP~Cr~~~~~~ 72 (81)
-.||.|+..+...
T Consensus 11 L~CP~c~~~L~~~ 23 (56)
T 2kpi_A 11 LACPACHAPLEER 23 (56)
T ss_dssp CCCSSSCSCEEEE
T ss_pred eeCCCCCCcceec
Confidence 3599999887543
No 257
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.51 E-value=23 Score=20.10 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=27.7
Q ss_pred CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH-----hCCCCCCCCccc
Q psy14787 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-----SSNKRCPICRVD 68 (81)
Q Consensus 15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~-----~~~~~CP~Cr~~ 68 (81)
+...| +|....... +.-+..-.|...||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~-----~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDES-----KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTT-----SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCC-----CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 898764220 1111122588899999995321 123469999764
No 258
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.90 E-value=5.2 Score=19.75 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=17.1
Q ss_pred CcccHhhHHHHHh--CCCCCCCCcccccc
Q psy14787 45 HLFHVECVDQWLS--SNKRCPICRVDIET 71 (81)
Q Consensus 45 h~fh~~Ci~~~~~--~~~~CP~Cr~~~~~ 71 (81)
..||..|+.--.. ....||.|......
T Consensus 30 ~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 30 EWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred cCCcccccccCcCCCCCEECCCCCccccc
Confidence 6799999972211 12359999766543
No 259
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.68 E-value=40 Score=18.02 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=17.1
Q ss_pred cccCCCCcccHhhHHHHHhCCC-CCCCCccccc
Q psy14787 39 WRLPCMHLFHVECVDQWLSSNK-RCPICRVDIE 70 (81)
Q Consensus 39 ~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~ 70 (81)
....||+.|-.. .... .||.|.....
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSCCC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCCCc
Confidence 345688887652 3345 7999987744
No 260
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.99 E-value=11 Score=17.62 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=22.2
Q ss_pred cccccccccccccccCcCCCCcccCCCCccc--HhhHHHHHhCCCCCCCCccccc
Q psy14787 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFH--VECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh--~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
.|+.|.+.+.. .. .....-+..|| ..|. .|-.|+..+.
T Consensus 4 ~C~~C~~~I~~------~~-~~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDP------EV-QRVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECT------TS-CEEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCcCCCCeecc------Cc-eEEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 57777776643 11 12223466788 7774 4777777664
No 261
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.45 E-value=21 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=15.4
Q ss_pred ccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70 (81)
Q Consensus 40 ~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~ 70 (81)
...||+.|-.. .....||.|...+.
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcce
Confidence 34588877432 11236999988754
Done!