RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14787
(81 letters)
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 60.8 bits (148), Expect = 2e-14
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
+ ++C IC +E + ++ RLPCMHLFH CVDQWL +NK+CPICRVDIE L
Sbjct: 13 TEEKCTICLSILEE---GEDVR---RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
Query: 75 KD 76
+
Sbjct: 67 SE 68
Score = 51.2 bits (123), Expect = 9e-11
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
MHLFH CVDQWL +NK+CPICRVDIE L +
Sbjct: 36 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 59.3 bits (144), Expect = 6e-14
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
C +C D E ++ LL+ LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 26 CVVCMCDFE---SRQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72
Score = 48.5 bits (116), Expect = 1e-09
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H FH +CVD+WL +N+ CPICR D
Sbjct: 46 HEFHAKCVDKWLKANRTCPICRADSGP 72
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 57.9 bits (140), Expect = 3e-13
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
L+ ++ C +C D + +D L PC H FH +C+ +WL K CP+C + +
Sbjct: 12 LNLHELCAVCLEDFK---PRDELG---ICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
Score = 45.9 bits (109), Expect = 1e-08
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDI 26
H FH +C+ +WL K CP+C + +
Sbjct: 37 KHAFHRKCLIKWLEVRKVCPLCNMPV 62
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 55.9 bits (135), Expect = 2e-12
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
+ S CP+C+ D L + + Q LPC HLFH C+ WL + CP+CR +
Sbjct: 12 VGSGLECPVCKEDYA--LGESVRQ----LPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65
Score = 44.7 bits (106), Expect = 4e-08
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETH 29
HLFH C+ WL + CP+CR +
Sbjct: 37 NHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 55.3 bits (134), Expect = 2e-12
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
S + CPIC DI T LPC HL H C ++ L RCP+C
Sbjct: 3 SGSSGCPICLEDIHTSR-----VVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
Score = 41.5 bits (98), Expect = 4e-07
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
HL H C ++ L RCP+C
Sbjct: 29 HLLHRTCYEEMLKEGYRCPLCSGPS 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 54.7 bits (132), Expect = 5e-12
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
L+ + C IC D LPC H F +C+D+W ++ CPICR+ +
Sbjct: 12 LTDEEECCIC---------MDGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
Score = 44.7 bits (106), Expect = 3e-08
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
H F +C+D+W ++ CPICR+ +
Sbjct: 33 AHSFCQKCIDKWSDRHRNCPICRLQMT 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 53.5 bits (129), Expect = 2e-11
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
CPIC + D+ LPC H FH CV WL + CP+CR
Sbjct: 38 GQEMCCPICCSEYVK---GDVAT---ELPCHHYFHKPCVSIWLQKSGTCPVCR 84
Score = 42.3 bits (100), Expect = 5e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
H FH CV WL + CP+CR
Sbjct: 63 HYFHKPCVSIWLQKSGTCPVCR 84
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 52.8 bits (127), Expect = 2e-11
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
+ +RCPIC D + LPC+H F C+ +W+ N CP+C+V +E+
Sbjct: 3 TVAERCPICLEDPS--------NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
Score = 40.9 bits (96), Expect = 1e-06
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28
+H F C+ +W+ N CP+C+V +E+
Sbjct: 25 LHAFCYVCITRWIRQNPTCPLCKVPVES 52
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 49.1 bits (118), Expect = 4e-10
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 40 RLP-CMHLFHVECVDQWLSSNKRCPICRVDI 69
LP C H FH ECVD WL S+ CP+CR+ +
Sbjct: 23 FLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
Score = 45.3 bits (108), Expect = 1e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH ECVD WL S+ CP+CR+ +
Sbjct: 29 HGFHAECVDMWLGSHSTCPLCRLTV 53
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 48.8 bits (116), Expect = 1e-09
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
S CPIC + L + C H+F +C+ L + CP CR I
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKI 66
Score = 38.4 bits (89), Expect = 1e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+F +C+ L + CP CR I
Sbjct: 42 HVFCSQCLRDSLKNANTCPTCRKKI 66
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 48.0 bits (114), Expect = 2e-09
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 12 WLSSNKRCPICRVDIETH------LNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
W C ICRV + NK C H FH C+ W+ N RCP+C
Sbjct: 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70
Query: 66 RVDIE 70
+ D
Sbjct: 71 QQDWV 75
Score = 38.7 bits (90), Expect = 1e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
H FH C+ W+ N RCP+C+ D
Sbjct: 49 NHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 46.0 bits (109), Expect = 1e-08
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
S CPIC + L + C H+F +C+ L + CP CR I
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
Score = 36.4 bits (84), Expect = 6e-05
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETH 29
H+F +C+ L + CP CR I
Sbjct: 37 HVFCSQCLRDSLKNANTCPTCRKKINHK 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 45.1 bits (107), Expect = 3e-08
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
L+ C IC+ L+ T C+H F C+ + + RCP C + +
Sbjct: 12 LTPYILCSICK--------GYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61
Score = 34.3 bits (79), Expect = 4e-04
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
+H F C+ + + RCP C + +
Sbjct: 35 LHTFCKSCIVRHFYYSNRCPKCNIVVH 61
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 44.0 bits (104), Expect = 5e-08
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
CPIC + L + C H+F +C+ L + CP CR I
Sbjct: 6 CPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKI 54
Score = 35.5 bits (82), Expect = 1e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H+F +C+ L + CP CR I
Sbjct: 30 HVFCSQCLRDSLKNANTCPTCRKKI 54
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 45.2 bits (106), Expect = 6e-08
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 12 WLSSNKRCPICRVDIETHL---------NKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
W C ICR I C H FH C+ +WL + + C
Sbjct: 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92
Query: 63 PICRVDIE 70
P+ + E
Sbjct: 93 PLDNREWE 100
Score = 36.3 bits (83), Expect = 2e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
H FH C+ +WL + + CP+ + E
Sbjct: 74 NHAFHFHCISRWLKTRQVCPLDNREWE 100
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 44.1 bits (103), Expect = 2e-07
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 12 WLSSNKRCPICRVDIETHL---------NKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
W C ICR I C H FH C+ +WL + + C
Sbjct: 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 103
Query: 63 PICRVDIE 70
P+ + E
Sbjct: 104 PLDNREWE 111
Score = 36.0 bits (82), Expect = 2e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
H FH C+ +WL + + CP+ + E
Sbjct: 85 NHAFHFHCISRWLKTRQVCPLDNREWE 111
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 42.9 bits (101), Expect = 2e-07
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK 75
RC ICR + P C H F C + + RC IC N
Sbjct: 17 RCFICR--------QAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNP 65
Score = 34.8 bits (80), Expect = 3e-04
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNK 32
H F C + + RC IC N
Sbjct: 35 HYFCESCALEHFRATPRCYICDQPTGGIFNP 65
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 42.1 bits (99), Expect = 4e-07
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
+ C IC + + P LPC H+F CV KRC +CR
Sbjct: 12 SLTVPECAICL--------QTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCR----QE 58
Query: 73 LNKDLLQP 80
+ +D L
Sbjct: 59 IPEDFLDS 66
Score = 34.0 bits (78), Expect = 6e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQP 37
H+F CV KRC +CR + +D L
Sbjct: 35 HVFCYLCVKGASWLGKRCALCR----QEIPEDFLDS 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 41.3 bits (97), Expect = 2e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
L+ + C +C + T + C+H F C+ ++L ++K CPIC V +
Sbjct: 12 LNPHLMCVLCG--------GYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63
Query: 73 LNKDLLQP 80
++
Sbjct: 64 RPLLNIRS 71
Score = 32.9 bits (75), Expect = 0.003
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRL 41
+H F C+ ++L ++K CPIC V + ++ L
Sbjct: 35 LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 42.4 bits (99), Expect = 2e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDIETH 72
S+ + C IC + + PC HL C+ W S + CP CR +I+
Sbjct: 330 STFQLCKICA---------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380
Score = 35.1 bits (80), Expect = 9e-04
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 2 HLFHVECVDQWLSSNKR-CPICRVDIETH 29
HL C+ W S + CP CR +I+
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCRCEIKGT 380
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 40.6 bits (94), Expect = 4e-06
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWR---------LPCMHLFHVECVDQWLSS-----N 59
+ + C IC + + + C H FH+ C+ + +
Sbjct: 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82
Query: 60 KRCPICR 66
+CP C+
Sbjct: 83 LQCPSCK 89
Score = 31.0 bits (69), Expect = 0.018
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 2 HLFHVECVDQWLSS-----NKRCPICR 23
H FH+ C+ + + +CP C+
Sbjct: 63 HAFHLLCLLAMYCNGNKDGSLQCPSCK 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 39.8 bits (92), Expect = 1e-05
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 22/93 (23%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWR--------------------- 40
H+F +C+ L + CP CR I + +
Sbjct: 34 HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIV 93
Query: 41 -LPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
C H+F +C+ L + CP CR I
Sbjct: 94 STECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126
Score = 32.4 bits (73), Expect = 0.006
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
CPIC D + + ++ C H+F +C+ L + CP CR I
Sbjct: 10 CPICM-DGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 36.4 bits (84), Expect = 6e-05
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL--SSNKRCPICRVDIETHL 73
K C IC L+Q C H+ CV ++ ++ RCP C +
Sbjct: 16 KICNICH--------SLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66
Score = 31.4 bits (71), Expect = 0.005
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 2 HLFHVECVDQWL--SSNKRCPICRVDIETHL 30
H+ CV ++ ++ RCP C +
Sbjct: 36 IRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 36.8 bits (85), Expect = 8e-05
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDI 69
+ ++ RC IC + L C L C+ +WL+ + +CP CR +
Sbjct: 17 ESIAEVFRCFICM--------EKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
Query: 70 ETH 72
+
Sbjct: 69 QLR 71
Score = 30.6 bits (69), Expect = 0.015
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 2 HLFHVECVDQWLSSNK-RCPICRVDIETH 29
L C+ +WL+ + +CP CR ++
Sbjct: 43 KLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 36.6 bits (84), Expect = 2e-04
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
+ L + +C IC + L C H F C+++W+ CPICR DI
Sbjct: 58 NDVLENELQCIIC---------SEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
Query: 70 ET 71
++
Sbjct: 109 KS 110
Score = 28.5 bits (63), Expect = 0.14
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIET 28
H F C+++W+ CPICR DI++
Sbjct: 83 AHSFCSYCINEWMKRKIECPICRKDIKS 110
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 36.0 bits (82), Expect = 4e-04
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-----------RCPI 64
RC IC + L C+ H C+++W + +CP
Sbjct: 308 ELRCNICF-AYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366
Query: 65 CRVDIETHLNKDL 77
C+ + T L
Sbjct: 367 CKAKLSTSFAALL 379
Score = 29.8 bits (66), Expect = 0.063
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 11/44 (25%)
Query: 2 HLFHVECVDQWLSSNK-----------RCPICRVDIETHLNKDL 34
H C+++W + +CP C+ + T L
Sbjct: 336 LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAALL 379
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 34.7 bits (80), Expect = 4e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 18 RCPICRVDIETHLNKDLLQ-PTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
RC IC + C H + C+ ++LS +CP C V +
Sbjct: 24 RCGIC---------FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68
Score = 27.8 bits (62), Expect = 0.16
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIE 27
H + C+ ++LS +CP C V +
Sbjct: 43 HNYCSLCIRKFLSYKTQCPTCCVTVT 68
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 33.8 bits (77), Expect = 0.002
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDI 69
C C+ +L+ C H +C+D+ + CP CR D+
Sbjct: 55 CICCQ---------ELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97
Score = 24.9 bits (54), Expect = 3.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 2 HLFHVECVDQWL-SSNKRCPICRVDI 26
H +C+D+ + CP CR D+
Sbjct: 72 HNVCKDCLDRSFRAQVFSCPACRYDL 97
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 31.7 bits (72), Expect = 0.003
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDI 69
C C +L + C H F C+ LSS + +C C+ I
Sbjct: 18 CEKC---------HLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
Score = 25.5 bits (56), Expect = 1.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 2 HLFHVECVDQWLSS-NKRCPICRVDI 26
H F C+ LSS + +C C+ I
Sbjct: 35 HRFCESCMAALLSSSSPKCTACQESI 60
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 33.2 bits (75), Expect = 0.003
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 29 HLNKDLLQPTWRLP-CMHLFHVECVDQWL--SSNKRCPICRVDIE 70
++ LL C H+ CV ++ ++ RCP C
Sbjct: 184 NICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 31.8 bits (72), Expect = 0.008
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDI 69
C IC ++L LPC H C + ++ CP CR +
Sbjct: 18 CGICM---------EILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
Score = 23.3 bits (50), Expect = 8.4
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 2 HLFHVECVDQWL-SSNKRCPICRVDI 26
H C + ++ CP CR +
Sbjct: 35 HTLCKPCFQSTVEKASLCCPFCRRRV 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 30.6 bits (69), Expect = 0.023
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 18 RCPICRVDIETHLNKDLL-QPTWRLPCMHLFHVECVDQWLSSNKRCPICRV 67
RC C ++L +P C H+F CV + + CP+C
Sbjct: 24 RCSRC---------TNILREPVCLGGCEHIFCSNCVSDCIGT--GCPVCYT 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 29.9 bits (67), Expect = 0.028
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPC-----MHLFHVECVDQWL--SSNKRCPICR 66
SS C IC + + + PC +H H C+ QW+ S + C +C+
Sbjct: 13 SSQDICRICHCEGDD-------ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65
Score = 27.6 bits (61), Expect = 0.17
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 1 MHLFHVECVDQWL--SSNKRCPICR 23
+H H C+ QW+ S + C +C+
Sbjct: 41 LHFVHQACLQQWIKSSDTRCCELCK 65
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 29.7 bits (66), Expect = 0.035
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICR 66
CP+C +E + C + C + + N CP CR
Sbjct: 13 ECPLCMEPLEIDDIN-----FFPCTCGYQICRFCWHRIRTDENGLCPACR 57
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 30.0 bits (67), Expect = 0.039
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDI 69
C C+ +L+ C H +C+ + + CP CR D+
Sbjct: 81 CVCCQ---------ELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123
Score = 23.8 bits (51), Expect = 7.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 2 HLFHVECVDQWL-SSNKRCPICRVDIETHLNKDLLQPTWRL 41
H +C+ + + CP CR D+ ++ P L
Sbjct: 98 HNVCKDCLQRSFKAQVFSCPACRHDLGQ---NYIMIPNEIL 135
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 28.8 bits (64), Expect = 0.054
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDI 69
++ CP C+ + + L+ C H CVD CP C +
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVN----VCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.6 bits (66), Expect = 0.074
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 19 CPICRVDIETHLNKDLLQ-PTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDI 69
CPIC D+L+ C+H F +C+ L S NK CP CR +
Sbjct: 57 CPICL---------DMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100
Score = 24.9 bits (54), Expect = 3.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 1 MHLFHVECVDQWL-SSNKRCPICRVDIETHLNKDLLQPTWRL 41
+H F +C+ L S NK CP CR + + K L+P
Sbjct: 74 LHRFCADCIITALRSGNKECPTCRKKLVS---KRSLRPDPNF 112
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 28.9 bits (64), Expect = 0.097
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRC 62
F + L + C C +++L+ ++ C H + C+ LSS + C
Sbjct: 19 FSKTLLGTKLEAKYLCSAC---------RNVLRRPFQAQCGHRYCSFCLASILSSGPQNC 69
Query: 63 PICRVDIETHLNKDLLQP 80
C + +L+
Sbjct: 70 AACVHEGIYEEGISILES 87
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 28.0 bits (62), Expect = 0.21
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICR 66
+ C IC + +L C HLF C+ + L CP CR
Sbjct: 20 FVKSISCQIC---------EHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 27.4 bits (61), Expect = 0.24
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICR 66
CPIC + L L C H +C+++ L+S+ RCP C
Sbjct: 18 CPICMESFTEEQLRPKL-----LHCGHTICRQCLEKLLASSINGVRCPFCS 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 26.7 bits (59), Expect = 0.28
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 41 LPCMHLFH-VECVDQWLSSNKRCPICRVDIE 70
HL C + + CPIC+ +I+
Sbjct: 25 GRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55
Score = 24.4 bits (53), Expect = 2.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 7 ECVDQWLSSNKRCPICRVDIE 27
C + + CPIC+ +I+
Sbjct: 35 HCARRLKKAGASCPICKKEIQ 55
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.0 bits (60), Expect = 0.33
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSNKR--CPICRVDIETHLN 74
C IC KD++ +P C + + EC+ L + CP C + ++
Sbjct: 15 LCLIC---------KDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH---QNDVS 62
Query: 75 KDLLQP 80
D L
Sbjct: 63 PDALIA 68
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 27.5 bits (61), Expect = 0.35
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICR 66
L S CPIC L+ + PC H F C+ + + + +CP+
Sbjct: 15 LESKYECPICL---------MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDN 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 27.6 bits (60), Expect = 0.37
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPI--CRVDI 69
CPI E P C H+F + + +L + CP C +
Sbjct: 183 TCPITCKPYEA--------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.2 bits (58), Expect = 0.38
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
RC C + + LPC+H C++ +S +CPIC+
Sbjct: 8 RCQQC---------QAEAKCPKLLPCLHTLCSGCLE---ASGMQCPICQAPW 47
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 26.7 bits (58), Expect = 0.45
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIE 70
C C + I+ + +PC H+F +C +K CP C ++
Sbjct: 4 CDKCGLPIKVYGR--------MIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 26.3 bits (58), Expect = 0.51
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFH-VECVDQWLSSNKRCPICRVDIE 70
L++ + C IC+ + HL C + NK CP+CR I+
Sbjct: 5 LNAIEPCVICQGRPKNGC-------IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56
Score = 24.4 bits (53), Expect = 2.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 7 ECVDQWLSSNKRCPICRVDIE 27
C + NK CP+CR I+
Sbjct: 36 TCAKKLKKRNKPCPVCRQPIQ 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 0.60
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIET 71
L S CPIC L+ + PC H F C+ + + +CP+ +
Sbjct: 15 LESKYECPIC---------LMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65
Query: 72 H 72
+
Sbjct: 66 N 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 25.9 bits (57), Expect = 0.77
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL--SSNKRCPICR 66
C IC KD++ +P C + + EC+ L S CP C
Sbjct: 17 LCLIC---------KDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 25.1 bits (55), Expect = 1.2
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 1 MHLFHVECVDQWL--SSNKRCPICR 23
+ H C+ WL S N C IC
Sbjct: 30 LENVHRSCLSTWLTISRNTACQICG 54
Score = 25.1 bits (55), Expect = 1.2
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 44 MHLFHVECVDQWL--SSNKRCPICR 66
+ H C+ WL S N C IC
Sbjct: 30 LENVHRSCLSTWLTISRNTACQICG 54
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 26.3 bits (57), Expect = 1.3
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 11/54 (20%)
Query: 7 ECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK 60
+ L S+ P R L + + P L + + + K
Sbjct: 917 STIKAHLLSDSTDPFNR----MPLKLEDVTPNEELR-------QKILCFKKQKK 959
Score = 24.3 bits (52), Expect = 6.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 4/31 (12%)
Query: 50 ECVDQWLSSNKRCPICRVDIETHLNKDLLQP 80
+ L S+ P R L + + P
Sbjct: 917 STIKAHLLSDSTDPFNR----MPLKLEDVTP 943
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme,
KIAA0126, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.2
Length = 98
Score = 25.1 bits (55), Expect = 1.8
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 7 ECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR 61
+ + L S++ P R + L D ++P L E + +WL+ K+
Sbjct: 48 STIARHLLSDQTDPFNR----SPLTMDQIRPNTELK-------EKIQRWLAERKQ 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 24.2 bits (53), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICR 66
CPIC D+LQ + C H F ++C+ Q ++ +CP+C+
Sbjct: 23 CPICL---------DILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 23.9 bits (52), Expect = 4.1
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 2 HLFHVECVDQWLSSNKRCPICR 23
+F ++Q++ PI
Sbjct: 24 TIFEKSLLEQYVKDTGNDPITN 45
Score = 23.9 bits (52), Expect = 4.1
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 45 HLFHVECVDQWLSSNKRCPICR 66
+F ++Q++ PI
Sbjct: 24 TIFEKSLLEQYVKDTGNDPITN 45
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 23.9 bits (52), Expect = 5.2
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK------RCPICR 66
CPIC +LL+ C H F C+ SN+ CP+CR
Sbjct: 22 CPICL---------ELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 23.6 bits (51), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 41 LPCMHLFH-VECVDQWLSSNKRCPICRVDIE 70
LPC H CV + ++CP+CR ++
Sbjct: 31 LPCRHTCLCDGCVKYF----QQCPMCRQFVQ 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 23.6 bits (51), Expect = 6.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 41 LPCMHLFH-VECVDQWLSSNKRCPICRVDIE 70
PC H C Q + CP+CR +E
Sbjct: 34 CPCGHTVCCESCAAQL----QSCPVCRSRVE 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 23.6 bits (51), Expect = 6.1
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 41 LPCMHLFH-VECVDQWLSSNKRCPICRVDIE 70
+PC HL +C + +CP+C I
Sbjct: 41 VPCGHLVTCKQCAEAV----DKCPMCYTVIT 67
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 24.0 bits (51), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIETHL 30
H + C+ LS + RCPIC++ + T L
Sbjct: 47 HYLCLNCLTLLLSVSNRCPICKMPLPTKL 75
Score = 24.0 bits (51), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 45 HLFHVECVDQWLSSNKRCPICRVDIETHL 73
H + C+ LS + RCPIC++ + T L
Sbjct: 47 HYLCLNCLTLLLSVSNRCPICKMPLPTKL 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.504
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,224,745
Number of extensions: 54907
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 146
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.2 bits)