RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14787
(81 letters)
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 46.9 bits (111), Expect = 2e-09
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
+ +RCPIC D + LPC+H F C+ +W+ N CP+C+V +E+
Sbjct: 3 TVAERCPICLEDPS--------NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
Score = 36.5 bits (84), Expect = 2e-05
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDIET 28
H F C+ +W+ N CP+C+V +E+
Sbjct: 26 HAFCYVCITRWIRQNPTCPLCKVPVES 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 44.4 bits (104), Expect = 3e-08
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 12 WLSSNKRCPICRVDI---------ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
W C ICR I C H FH C+ +WL + + C
Sbjct: 17 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 76
Query: 63 PICRVDIE 70
P+ + E
Sbjct: 77 PLDNREWE 84
Score = 34.7 bits (79), Expect = 2e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDIE 27
H FH C+ +WL + + CP+ + E
Sbjct: 58 NHAFHFHCISRWLKTRQVCPLDNREWE 84
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 42.5 bits (100), Expect = 6e-08
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
C +C ++E L C H FH ECVD WL S+ CP+CR+ +
Sbjct: 8 CAVCLAELEDGEEARFL-----PRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
Score = 36.4 bits (84), Expect = 1e-05
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 HLFHVECVDQWLSSNKRCPICRVDI 26
H FH ECVD WL S+ CP+CR+ +
Sbjct: 29 HGFHAECVDMWLGSHSTCPLCRLTV 53
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 39.2 bits (91), Expect = 2e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDIETH 72
S+ + C IC + + PC HL C+ W S + CP CR +I+
Sbjct: 21 STFQLCKICA---------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71
Score = 31.5 bits (71), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 2 HLFHVECVDQWLSSNKR-CPICRVDIETH 29
HL C+ W S + CP CR +I+
Sbjct: 43 HLMCTSCLTSWQESEGQGCPFCRCEIKGT 71
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 34.5 bits (79), Expect = 1e-04
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
RC C+ + LPC+H C++ +CPIC+
Sbjct: 8 RCQQCQ---------AEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
Score = 25.6 bits (56), Expect = 0.23
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 1 MHLFHVECVDQWLSSNKRCPICRVDI 26
+H C++ +CPIC+
Sbjct: 25 LHTLCSGCLEAS---GMQCPICQAPW 47
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.0 bits (79), Expect = 2e-04
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 41 LPCMHLFHVECVDQWLSS-----NKRCPICR 66
C H FH+ C+ + + +CP C+
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89
Score = 29.6 bits (65), Expect = 0.017
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 2 HLFHVECVDQWLSS-----NKRCPICR 23
H FH+ C+ + + +CP C+
Sbjct: 63 HAFHLLCLLAMYCNGNKDGSLQCPSCK 89
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 32.4 bits (73), Expect = 7e-04
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDI 69
CP C+ + + L+ C H CVD CP C +
Sbjct: 5 GCPRCKTTKYRNPSLKLMVN----VCGHTLCESCVDLLFVRGAGNCPECGTPL 53
Score = 24.0 bits (51), Expect = 1.2
Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 1 MHLFHVECVDQWLSSNKR-CPICRVDI 26
H CVD CP C +
Sbjct: 27 GHTLCESCVDLLFVRGAGNCPECGTPL 53
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 32.7 bits (74), Expect = 0.001
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 6 VECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RC 62
V+ V + CPIC +L++ C H+F C+ + L+ K +C
Sbjct: 11 VQNVINAMQKILECPICL---------ELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
Query: 63 PICRVDI 69
P+C+ DI
Sbjct: 62 PLCKNDI 68
Score = 23.9 bits (51), Expect = 2.1
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 1 MHLFHVECVDQWLSSNK---RCPICRVDIETHLNKDLLQPTWRL 41
H+F C+ + L+ K +CP+C+ + K LQ + R
Sbjct: 40 DHIFCKFCMLKLLNQKKGPSQCPLCK----NDITKRSLQESTRF 79
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 31.8 bits (72), Expect = 0.002
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICR 66
C IC + +L C HLF C+ + L CP CR
Sbjct: 26 CQIC---------EHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
Score = 24.9 bits (54), Expect = 0.87
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 1 MHLFHVECVDQWLSSNKR-CPICR 23
HLF C+ + L CP CR
Sbjct: 42 KHLFCRICILRCLKVMGSYCPSCR 65
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.1 bits (64), Expect = 0.016
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICR 66
P+C + E N+ + H C+ WL+ + C IC
Sbjct: 6 VPVCWICNEELGNERFRACG-CTGELENVHRSCLSTWLTISRNTACQICG 54
Score = 24.1 bits (51), Expect = 1.3
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 1 MHLFHVECVDQWLSSN--KRCPICR 23
+ H C+ WL+ + C IC
Sbjct: 30 LENVHRSCLSTWLTISRNTACQICG 54
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 28.1 bits (62), Expect = 0.025
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIE 70
CP+C +E C + C + + N CP CR
Sbjct: 3 CPLCMEPLEIDDINFFP-----CTCGYQICRFCWHRIRTDENGLCPACRKPYP 50
Score = 22.4 bits (47), Expect = 4.4
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 2 HLFHVECVDQWLS-SNKRCPICRVDIE 27
+ C + + N CP CR
Sbjct: 24 YQICRFCWHRIRTDENGLCPACRKPYP 50
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.7 bits (61), Expect = 0.077
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 14/74 (18%)
Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS--------NKRCPIC 65
S + C +C + Q T C +F C+ Q++ CP
Sbjct: 3 SGSSGCKLCLGEYPVE------QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56
Query: 66 RVDIETHLNKDLLQ 79
+ HL ++ ++
Sbjct: 57 ACPKQGHLQENEIE 70
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 24.7 bits (53), Expect = 0.88
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
RC C L +P C H+F CV + CP+C
Sbjct: 24 RCSRC--------TNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPA 65
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 22.3 bits (47), Expect = 7.2
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
RCPI +L++ + + + +WL + +
Sbjct: 10 RCPIS---------LELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.504
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,290
Number of extensions: 13206
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 39
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)