BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14790
(656 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VN4|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (P475s Mutant)
Length = 410
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 113/239 (47%), Gaps = 15/239 (6%)
Query: 100 VCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPW 159
+CQ L C +D ++ C P DGT C G WC +G C R L P G W
Sbjct: 47 MCQALSCHTDPLDQSSCSRLLVPLLDGTEC-GVEKWCSKGRC--RSLVELTPIAAVHGRW 103
Query: 160 QSFGS---CSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFRE 216
S+G CSR CGGG+ R+C++P PA GG+ CVG ++ CNT+ C ++F
Sbjct: 104 SSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFMS 163
Query: 217 EQCVKFNGNNF-SVPGLSRNVKW--TPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTP 273
+QC + +G S PG + W + GD C+ CR S D +DGT
Sbjct: 164 QQCARTDGQPLRSSPGGASFYHWGAAVSHSQGDALCRHMCRAIGESFIMKRGDSFLDGTR 223
Query: 274 CGPD------TFDVCINGKCMKAGCNHVLDSDSKLDFCGVCEGNNQTCQEIRGSHNTSQ 326
C P T +C++G C GC+ +DS D C VC G+N TC +GS +
Sbjct: 224 CMPSGPREDGTLSLCVSGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGR 282
>pdb|3GHM|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-1)
Length = 410
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 100 VCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPW 159
+CQ L C +D ++ C P DGT C G WC +G C R L P G W
Sbjct: 47 MCQALSCHTDPLDQSSCSRLLVPLLDGTEC-GVEKWCSKGRC--RSLVELTPIAAVHGRW 103
Query: 160 QSFGS---CSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFRE 216
S+G CSR CGGG+ R+C++P PA GG+ CVG ++ CNT+ C ++F
Sbjct: 104 SSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFMS 163
Query: 217 EQCVKFNGNNF-SVPGLSRNVKWTPK--YLGGDNACKLYCRVAQSSAYYLLKDKVIDGTP 273
+QC + +G S PG + W + GD C+ CR S D +DGT
Sbjct: 164 QQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTR 223
Query: 274 CGPD------TFDVCINGKCMKAGCNHVLDSDSKLDFCGVCEGNNQTCQEIRGSHNTSQ 326
C P T +C+ G C GC+ +DS D C VC G+N TC +GS +
Sbjct: 224 CMPSGPREDGTLSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGR 282
>pdb|3GHN|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-2)
Length = 419
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 100 VCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPW 159
+CQ L C +D ++ C P DGT C G WC +G C R L P G W
Sbjct: 47 MCQALSCHTDPLDQSSCSRLLVPLLDGTEC-GVEKWCSKGRC--RSLVELTPIAAVHGRW 103
Query: 160 QSFGS---CSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFRE 216
S+G CSR CGGG+ R+C++P PA GG+ CVG ++ CNT+ C ++F
Sbjct: 104 SSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFMS 163
Query: 217 EQCVKFNGNNF-SVPGLSRNVKWTPK--YLGGDNACKLYCRVAQSSAYYLLKDKVIDGTP 273
+QC + +G S PG + W + GD C+ CR S D +DGT
Sbjct: 164 QQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTR 223
Query: 274 CGPD------TFDVCINGKCMKAGCNHVLDSDSKLDFCGVCEGNNQTCQEIRGSHNTSQ 326
C P T +C+ G C GC+ +DS D C VC G+N TC +GS +
Sbjct: 224 CMPSGPREDGTLSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGR 282
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound
Length = 378
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 89/216 (41%), Gaps = 28/216 (12%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQ 60
MS L + WS C+ +TEFL+ G G + L Q
Sbjct: 178 MSSILTSIDASKPWSKCTSATITEFLD------------DGHGNCLLDLPRKQILGPEEL 225
Query: 61 PPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQT 120
P Q +L E C G VC LWC + C T+
Sbjct: 226 PGQTYDATQQCNLTFGPEYSVCP-------------GMDVCARLWCAVVRQGQMVCLTKK 272
Query: 121 SPWADGTPCYGATHWCQRGSCVARDTSSL--RPRDGGWGPWQSFGSCSRPCGGGIKKSYR 178
P +GTPC G C +G CV + G WG W S+G CSR CGGG++ +YR
Sbjct: 273 LPAVEGTPC-GKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYR 331
Query: 179 ECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDF 214
C++PAP N G+YC GKR YRSC+ C P F
Sbjct: 332 HCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKSF 367
>pdb|3R6B|A Chain A, Crystal Structure Of Thrombospondin-1 Tsr Domains 2 And 3
Length = 153
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 121 SPWADGTPCYGA---THWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSY 177
SP +G PC G T C++ +C P +GGWGPW + CS CGGG++K
Sbjct: 42 SPQMNGKPCEGEARETKACKKDAC---------PINGGWGPWSPWDICSVTCGGGVQKRS 92
Query: 178 RECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFN 223
R C++P P GGK CVG + CN +DC +R K N
Sbjct: 93 RLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKEN 138
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
+DGGW W + SCS CG G+ R C+SP+P GK C G+ ++C C
Sbjct: 10 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDAC 65
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 417 CSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP------QWSVDKWS 470
CS +CG GV TR +C + +++ C E + C CP WS W
Sbjct: 23 CSVTCGDGVITRIRLC-NSPSPQMNGKPCEG-EARETKACKKDACPINGGWGPWS--PWD 78
Query: 471 ACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
CSV+CG G ++R C C D +IC CP
Sbjct: 79 ICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVT--ENQICNKQDCP 123
>pdb|1LSL|A Chain A, Crystal Structure Of The Thrombospondin-1 Type 1 Repeats
Length = 113
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 121 SPWADGTPCYGA---THWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSY 177
SP +G PC G T C++ +C P +GGWGPW + CS CGGG++K
Sbjct: 33 SPQMNGKPCEGEARETKACKKDAC---------PINGGWGPWSPWDICSVTCGGGVQKRS 83
Query: 178 RECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
R C++P P GGK CVG + CN +DC
Sbjct: 84 RLCNNPTPQFGGKDCVGDVTENQICNKQDC 113
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
+DGGW W + SCS CG G+ R C+SP+P GK C G+ ++C C
Sbjct: 1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDAC 56
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 417 CSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP------QWSVDKWS 470
CS +CG GV TR +C + +++ C E + C CP WS W
Sbjct: 14 CSVTCGDGVITRIRLC-NSPSPQMNGKPCEG-EARETKACKKDACPINGGWGPWS--PWD 69
Query: 471 ACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516
CSV+CG G ++R C C D +IC C
Sbjct: 70 ICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVT--ENQICNKQDC 113
>pdb|1W0R|A Chain A, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0R|B Chain B, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|A Chain A, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|B Chain B, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|C Chain C, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
Length = 442
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNT 204
P GGWGPW C CG G R C+ P P +GG +C G R CNT
Sbjct: 228 PVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNT 281
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209
P GGW W + CS C G + R C+ PAP GG +C G+ +C+T+ P
Sbjct: 107 PEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGG-HCPGQAQESEACDTQQVCP 164
>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
Length = 300
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 57/155 (36%), Gaps = 35/155 (22%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQ 60
M+ L N + WS CS + +T FL+ EC +
Sbjct: 178 MASMLSNLDHSQPWSPCSAYMITSFLD---NGHGEC--------------------LMDK 214
Query: 61 PPQPLHNATCADLP---RPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCH 117
P P+ DLP A R+ C+ K P C LWCT G C
Sbjct: 215 PQNPIQLP--GDLPGTSYDANRQ-CQFTFGEDS-KHCPDAASTCSTLWCTGTSGGVLVCQ 270
Query: 118 TQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPR 152
T+ PWADGT C G WC G CV + L PR
Sbjct: 271 TKHFPWADGTSC-GEGKWCINGKCVNK----LVPR 300
>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
Length = 297
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 57/155 (36%), Gaps = 35/155 (22%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQ 60
M+ L N + WS CS + +T FL+ EC +
Sbjct: 175 MASMLSNLDHSQPWSPCSAYMITSFLD---NGHGEC--------------------LMDK 211
Query: 61 PPQPLHNATCADLP---RPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCH 117
P P+ DLP A R+ C+ K P C LWCT G C
Sbjct: 212 PQNPIQLP--GDLPGTSYDANRQ-CQFTFGEDS-KHCPDAASTCSTLWCTGTSGGVLVCQ 267
Query: 118 TQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPR 152
T+ PWADGT C G WC G CV + L PR
Sbjct: 268 TKHFPWADGTSC-GEGKWCINGKCVNK----LVPR 297
>pdb|2RJP|A Chain A, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|B Chain B, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|C Chain C, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|D Chain D, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|3B2Z|A Chain A, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|B Chain B, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|C Chain C, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|D Chain D, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|E Chain E, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|F Chain F, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|G Chain G, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|H Chain H, Crystal Structure Of Adamts4 (Apo Form)
Length = 316
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 95 PWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARD 145
P P C LWC+ C T+ SPWADGTPC G C G C+ D
Sbjct: 249 PQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPC-GPAQACMGGRCLHMD 298
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 169 CGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSC 202
C GI++ REC +PAP NGG C G++V+ ++C
Sbjct: 521 CRAGIQERRRECDNPAPQNGGASCPGRKVQTQAC 554
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 153 DGGWGPWQSFGSCSRPCGGGIKKS-YRECSSPAPANGGKYCVGKRVRYRSC 202
DG WG W S+ +C K+S REC++PAP GGK C G++ + C
Sbjct: 544 DGQWGCWSSWSTCD----ATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDC 590
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVG 194
P DG W W ++ SCS G K R+C++P P NGG C G
Sbjct: 489 PIDGKWNCWSNWSSCS----GRRKTRQRQCNNPPPQNGGSPCSG 528
>pdb|4HQF|A Chain A, Crystal Structure Of Plasmodium Falciparum Trap, I4 Form
Length = 281
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 455 VCGTSKCPQWSVDKWSACSVSCGKG--ERRREIW 486
V T+ C W D+WS CSV+CGKG R+REI
Sbjct: 213 VEKTASCGVW--DEWSPCSVTCGKGTRSRKREIL 244
>pdb|2QV6|A Chain A, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|B Chain B, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|C Chain C, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
pdb|2QV6|D Chain D, Gtp Cyclohydrolase Iii From M. Jannaschii (Mj0145)
Complexed With Gtp And Metal Ions
Length = 268
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 356 DNYLALSDGETNEPILNGKNVVSKSHKVIVFGGIAIDYTGTDA 398
DN++A S+G + E L+ N ++K +K+ + GI I T DA
Sbjct: 183 DNFMAPSNGMSEEDFLDIFNRINKKYKIELKAGIGIGRTAEDA 225
>pdb|2BBX|A Chain A, Nmr Solution Structure Of The Tsr Domain Of Malaria Trap
Protein
Length = 49
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 457 GTSKCPQWSVDKWSACSVSCGKGERRRE 484
G++ C W D+WS CSV+CGKG R R+
Sbjct: 1 GSASCGVW--DEWSPCSVTCGKGTRSRK 26
>pdb|2HW2|A Chain A, Crystal Structure Of Rifampin Adp-Ribosyl Transferase In
Complex With Rifampin
Length = 143
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 469 WSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEWITGQFSAEV 528
W A ++ G+G R R + + + D D +P Y P WI G+ + V
Sbjct: 59 WGA-ELAAGEG-RGRIFIVEPEGAIEDDPNVTDKKLPGNPTRSYRTREPVWIVGELTDWV 116
Query: 529 GKNPDQKMGKGTAIRDVR 546
G P+Q + ++R
Sbjct: 117 GHPPEQLAAMRQGLEELR 134
>pdb|1VEX|A Chain A, F-Spondin Tsr Domain 4
Length = 56
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 468 KWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
+WS CSV+CGKG R R+ + + C +D A K C + CP
Sbjct: 12 EWSDCSVTCGKGMRTRQ---RMLKSLAELGDCNEDLEQAEK--CMLPECP 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,416,514
Number of Sequences: 62578
Number of extensions: 1088227
Number of successful extensions: 2017
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1924
Number of HSP's gapped (non-prelim): 76
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)