Query psy14790
Match_columns 656
No_of_seqs 308 out of 2752
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3538|consensus 100.0 5.3E-64 1.2E-68 589.3 31.9 476 1-550 347-839 (845)
2 KOG4597|consensus 100.0 2.9E-29 6.3E-34 259.9 15.4 327 291-653 1-409 (560)
3 KOG4597|consensus 99.9 1.4E-20 3.1E-25 195.7 19.5 192 416-612 273-506 (560)
4 PF05986 ADAM_spacer1: ADAM-TS 99.5 3.3E-14 7.1E-19 127.1 8.8 94 316-416 1-96 (114)
5 smart00209 TSP1 Thrombospondin 99.1 1.6E-10 3.4E-15 88.7 5.5 53 156-208 1-53 (53)
6 PTZ00087 thrombosponding-relat 98.9 7.1E-10 1.5E-14 108.4 4.7 54 151-209 228-286 (340)
7 KOG3538|consensus 98.9 1.1E-08 2.3E-13 121.9 12.1 57 568-653 775-831 (845)
8 PF00090 TSP_1: Thrombospondin 98.8 2.7E-09 5.8E-14 80.3 3.5 49 157-207 1-49 (49)
9 KOG3539|consensus 98.8 6.6E-09 1.4E-13 109.5 7.5 185 460-653 246-475 (508)
10 KOG3607|consensus 98.8 6.2E-09 1.3E-13 119.3 7.8 243 1-309 354-639 (716)
11 smart00209 TSP1 Thrombospondin 98.8 8.1E-09 1.8E-13 79.1 4.9 51 465-517 3-53 (53)
12 KOG3539|consensus 98.7 3.3E-08 7.2E-13 104.3 8.5 181 416-609 259-508 (508)
13 PF00090 TSP_1: Thrombospondin 98.5 4.5E-08 9.6E-13 73.6 1.8 46 467-516 4-49 (49)
14 PTZ00087 thrombosponding-relat 97.8 1.3E-05 2.9E-10 78.9 4.0 51 463-519 232-287 (340)
15 PTZ00441 sporozoite surface pr 97.7 3.2E-05 6.8E-10 86.0 4.0 50 152-210 236-285 (576)
16 KOG1480|consensus 97.5 0.00012 2.5E-09 82.3 6.2 116 81-209 214-330 (909)
17 KOG1480|consensus 97.4 0.00011 2.5E-09 82.3 4.2 58 151-209 219-276 (909)
18 smart00608 ACR ADAM Cysteine-R 97.3 0.00011 2.5E-09 67.8 2.7 131 125-290 1-137 (137)
19 PTZ00441 sporozoite surface pr 97.3 0.00018 3.8E-09 80.2 3.9 47 459-518 238-284 (576)
20 KOG3658|consensus 85.1 7 0.00015 44.6 10.8 23 7-29 434-456 (764)
21 smart00608 ACR ADAM Cysteine-R 84.2 0.88 1.9E-05 42.1 2.9 20 123-143 117-136 (137)
22 PF12115 Salp15: Salivary prot 60.6 4.5 9.8E-05 36.3 1.3 41 247-289 73-113 (118)
23 PF08516 ADAM_CR: ADAM cystein 57.3 1.2 2.5E-05 40.1 -3.1 78 125-226 1-82 (117)
24 PF07771 TSGP1: Tick salivary 41.7 23 0.0005 31.9 2.7 41 248-290 38-80 (120)
25 PF12115 Salp15: Salivary prot 32.5 26 0.00057 31.4 1.6 21 123-144 93-114 (118)
26 KOG3658|consensus 31.7 96 0.0021 35.9 6.0 52 264-317 556-616 (764)
27 smart00193 PTN Pleiotrophin / 23.6 1.1E+02 0.0024 24.9 3.5 19 519-544 50-68 (80)
28 KOG3607|consensus 21.7 1.3E+02 0.0029 35.6 5.2 69 75-145 528-621 (716)
29 PF01091 PTN_MK_C: PTN/MK hepa 20.6 71 0.0015 25.3 1.8 42 464-512 6-47 (63)
No 1
>KOG3538|consensus
Probab=100.00 E-value=5.3e-64 Score=589.35 Aligned_cols=476 Identities=37% Similarity=0.778 Sum_probs=411.3
Q ss_pred CCCccCCCCCCcccccchHHHHHHHhhhccccccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCC-
Q psy14790 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAER- 79 (656)
Q Consensus 1 m~~~~~~~~~~~~wS~Cs~~~~~~fl~~~~~~ws~Cs~~CG~G~r~r~~~Cl~~~p~~~~~~~~~~~~~~~~~~~Pg~~- 79 (656)
|++++...++.++||+||+.+|++||+.+ ..+||.|.|....+ .++. .+||+.
T Consensus 347 m~~~~~~~~~~~~WS~CS~~~~t~fl~~~------------------~~~Cl~d~p~~~~~--~~p~------~lPg~~y 400 (845)
T KOG3538|consen 347 MSSDTCGGNHELTWSECSREYLTRFLDDG------------------EGNCLSDQPFSALP--KLPS------QLPGQTY 400 (845)
T ss_pred cCcccccCCCCccCCcchHHHHHHHhccC------------------ccceeecCCccccC--CCCc------cCCcccc
Confidence 99999999999999999999999999987 77999999963333 4555 799965
Q ss_pred ---CCCccccCCCCceeCCCCc--CccceeeccCCCCCCCccccCCCCCCCCCcccCC-CeeeecCeEeccCCCCCC--C
Q psy14790 80 ---EPCEGPCNAARWKFSPWGT--PVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGA-THWCQRGSCVARDTSSLR--P 151 (656)
Q Consensus 80 ---~qC~~~~~g~~~~~c~~~~--~~C~~lwC~~~~~~~~~C~t~~~p~~~Gt~C~G~-~~wC~~g~C~~~~~~~~~--~ 151 (656)
+||+++| |..+++|+.+. ++|..|||....+.. .|+|++.|+++||.| |. +|||.+|.|+......+. +
T Consensus 401 ~~~~qC~~~f-g~~~~~c~~~~~~~~c~~lWC~~~~g~~-~C~t~~~p~~~gt~C-g~~~~~c~~g~c~~~~~~~~~~~~ 477 (845)
T KOG3538|consen 401 DADEQCEFQF-GPKSKECPDMRAPDPCRELWCHTDGGSS-SCSTKHLPAADGTEC-GEFGKWCRKGRCTPRTPRAPPCIP 477 (845)
T ss_pred CCCCcccccc-CCcceeccccCccchhhhhcccCCCCCC-ccccCcCCcccCCCc-CCcCCcccCCcccCcccccCCCCC
Confidence 9999999 99999999844 599999999777765 899999999999999 96 999999999998766333 4
Q ss_pred cCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCCCC-CCCcccchhhccccCccCCCC
Q psy14790 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP-GTMDFREEQCVKFNGNNFSVP 230 (656)
Q Consensus 152 ~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~Cp~-~~~~~r~~qC~~~~~~~~~~~ 230 (656)
.+|.|+.|++|+.||+|||+|+++|.|.|+||.|.++|++|.|...+++.||+.+||. ...+||+.||+.++...+...
T Consensus 478 ~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~~C~g~~~~~~~c~~~~C~~~~~~~fr~~qc~~~~~~~~~~~ 557 (845)
T KOG3538|consen 478 FDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGKYCPGERLRYRSCNTEPCPPPESESFREQQCSAFNGQELEPT 557 (845)
T ss_pred CCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCccCCCCCceeeecCCCCCCCCCccCHHHHhhhhhccccccCC
Confidence 5999999999999999999999999999999999999999999999999999999999 889999999999999887642
Q ss_pred CCCCCceeccccCCCccc-ccccccccccceEEEecCcccCCCCCCCCCcccccCCeeecccccccccCCCccccccccC
Q psy14790 231 GLSRNVKWTPKYLGGDNA-CKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGKCMKAGCNHVLDSDSKLDFCGVCE 309 (656)
Q Consensus 231 ~~~~~~~W~p~~~~~~~~-C~l~C~~~~~~~~~~~~~~v~dGt~C~~~~~~~Ci~G~C~~~gCd~~l~S~~~~D~CgvC~ 309 (656)
...+.|.+++... .+ |+|+|+..+...++.+...|+|||+|.++..++|+.|.|+++|||++++|.+++|+|+||+
T Consensus 558 --~~~~~w~~~~~~~-~~~Ckl~C~~~~~~~~~~~~~~v~dgt~C~~~~~~~c~~g~C~~~~Cd~~~~s~~~~d~cgvCg 634 (845)
T KOG3538|consen 558 --LKPLQWVPKTAGV-EPDCKLFCRARGTGCVKSRSEQVKDGTPCGPDSVDVCVQGSCKKVGCDSELGSEAREDKCGVCG 634 (845)
T ss_pred --cccceecccccCC-CCcceeccccccccccEEccccccCCCccCCCCcccccccEEeccCCCCccccccccccCCccC
Confidence 3567999988765 34 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCccccCCCC-ccEEEecCCCCCeeeEEeeccCCCCCCCCcccccCCCCCceEecCceeeeCCcceEEEcc
Q psy14790 310 GNNQTCQEIRGSHNTSQYG-YTRVLRIPAGSSNLDITQYGYGGTSSDDNYLALSDGETNEPILNGKNVVSKSHKVIVFGG 388 (656)
Q Consensus 310 Gd~s~C~~~~g~~~~~~~g-~~~v~~iP~ga~~i~i~~~~~s~~~~~~~~la~~~~~~~~~~lng~~~~~~~~~~~~~~g 388 (656)
||+++|..+.++|+..... |..++.||+++++|.|.+.. ....+|++++....++|.+|+.|.+.+.. .+.++|
T Consensus 635 G~~s~c~~~~g~~~~~~~~~y~~v~~ip~~a~~i~v~~~~----~~~~~~~a~k~~~~~~~~~n~~~~i~~~~-~~~~~g 709 (845)
T KOG3538|consen 635 GDGSSCKTVSGTFNPSSKAGYNKVVEIPAGASHIRVRECL----CGSPHYLALKSSDCGKYSLNGRWQIQWPS-EFCCAG 709 (845)
T ss_pred CCcccCceeeCCcccccCCccceeEEEeCCCceeeeeccc----cccccchhhhccCcCccccCCCccccccC-cccccc
Confidence 9999999999999986443 99999999999999999941 13579999999865899999999999555 788888
Q ss_pred eEEEeccCCCceeeEecCCCCceeeee----ccccccCCCeEEEEEEeecCCCccccCCCCCcccccceeecCCCCCCCc
Q psy14790 389 IAIDYTGTDAVVERINCSRPLTKELIV----ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCPQW 464 (656)
Q Consensus 389 ~~~~y~~~~~~~e~i~~~gp~~~~~~~----~CS~tCG~G~q~R~~~C~~~~~~~v~~~~C~~~~~~~~~~C~~~~Cp~W 464 (656)
+.+.|....+..|.|...+|+.+.+.+ ........++++......+. . . .. =..|
T Consensus 710 ~~~~~~~~~~~~e~l~~~gp~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~-----~-----~~---------~~~w 768 (845)
T KOG3538|consen 710 TTRRYSRRPNTPESLEASGPLPETLTVQVLVQGDTVPNPGVRYEFTVPKDT--E-----P-----RR---------QYTW 768 (845)
T ss_pred ceeeeccCcccceecccCCCcCCCceEEEEEecCCCCCCccceEEEcccCC--C-----c-----cc---------ceee
Confidence 999999999999999999999988754 33433333555555422111 0 0 00 0158
Q ss_pred ccCCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccCCCCC-CCCccCCCCCCCCCCCCccCCCCeEEE
Q psy14790 465 SVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC-PEWITGQFSAEVGKNPDQKMGKGTAIR 543 (656)
Q Consensus 465 ~~~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~~~~C-p~W~~~~Ws~~~~~~Cs~~Cg~G~q~R 543 (656)
..+.|++||++||+|+|.|.+.|..... . ....+.|+..+| +.|.+++|++ ||++||.|++.|
T Consensus 769 ~~~~w~~Cs~~cg~g~~~~~~~C~~~~~-~----------~~~~~~C~~~~c~~~w~~~~w~~-----Cs~~cg~g~~~r 832 (845)
T KOG3538|consen 769 AHGPWSECSASCGGGVQSRKVSCRRTFD-E----------VPRWRKCNLQPCPPRWVAGEWSE-----CSRTCGSGLRAR 832 (845)
T ss_pred ecCCccccccccCCCceecccceeeccc-c----------CccccccCCCCCCCcceecCCch-----hhhhhcCccccc
Confidence 8899999999999999999999985422 1 356789999999 4499999999 999999999999
Q ss_pred EEEeccC
Q psy14790 544 DVRCNLG 550 (656)
Q Consensus 544 ~~~C~~~ 550 (656)
.|.|...
T Consensus 833 ~v~C~~~ 839 (845)
T KOG3538|consen 833 SVACRDS 839 (845)
T ss_pred ccccccc
Confidence 9999875
No 2
>KOG4597|consensus
Probab=99.96 E-value=2.9e-29 Score=259.86 Aligned_cols=327 Identities=24% Similarity=0.421 Sum_probs=248.0
Q ss_pred cccccccCCCccccccccCCCCcccccccCccccC--CCCccEEEecCCCCCeeeEEeeccCCCCCCCCcccccCCCCCc
Q psy14790 291 GCNHVLDSDSKLDFCGVCEGNNQTCQEIRGSHNTS--QYGYTRVLRIPAGSSNLDITQYGYGGTSSDDNYLALSDGETNE 368 (656)
Q Consensus 291 gCd~~l~S~~~~D~CgvC~Gd~s~C~~~~g~~~~~--~~g~~~v~~iP~ga~~i~i~~~~~s~~~~~~~~la~~~~~~~~ 368 (656)
+||+.+++...+|.++-+.+++++|+++.+.+... ..||.....||.+++|+.+.+.... .+=+++++. ..-
T Consensus 1 ~c~~k~~~~~~~~a~~~~l~~g~t~~~~~~~~~~r~~~pGvh~~~~~p~~~tnaqs~~~r~~-----~r~~e~~ng-ek~ 74 (560)
T KOG4597|consen 1 GCDGKLGSSLKFDALLKLLLLGSTCKTIEGLPDERNSHPGVHPNIKLPNLWTNAQSTCAREC-----TRDQECKNG-EKC 74 (560)
T ss_pred CCCcccCcchhhcchhhhhccCCcCccccccccccCCCCCcCccccCccccccccccccCcc-----CCccccccc-chh
Confidence 68999999999999999999999999999888773 6799999999999999998887543 233444433 334
Q ss_pred eEecCceeeeCCcceEEEcceEEEeccCCCceeeEecCCCCceee-----------------------------------
Q psy14790 369 PILNGKNVVSKSHKVIVFGGIAIDYTGTDAVVERINCSRPLTKEL----------------------------------- 413 (656)
Q Consensus 369 ~~lng~~~~~~~~~~~~~~g~~~~y~~~~~~~e~i~~~gp~~~~~----------------------------------- 413 (656)
++.+|.....-.. ++. .++++.|.+. ..|.+.+..|+.+.+
T Consensus 75 ~~~~g~~~~~ve~-r~~-~~~k~~~~g~--~pea~~~~~~~~qq~s~~dif~~~~r~~~~~~~~~eP~~~~~d~~~k~~n 150 (560)
T KOG4597|consen 75 CYNVGGGLSCVEA-RVE-VGTKFVPDGA--EPEALCAQFPCSQQGSVCDIFDGQPRCTCIDRCEKEPSFTCADDGLKYYN 150 (560)
T ss_pred ceecCCchhheee-ecc-ccceecCCCC--CccchhccCccccccccccccCCCCCcccccccccCCchhhhhcCceecc
Confidence 4555543332211 222 2355555432 233333333332222
Q ss_pred eeccccccCCCeEEEEEEeecCC-CccccCCCCCcccc--cceee-cCCCCCC-CcccCCCcccccccC-CCeEEEEEEE
Q psy14790 414 IVECSKSCGTGVETRSAVCIDDY-GREVDESQCSAAEK--IIQRV-CGTSKCP-QWSVDKWSACSVSCG-KGERRREIWC 487 (656)
Q Consensus 414 ~~~CS~tCG~G~q~R~~~C~~~~-~~~v~~~~C~~~~~--~~~~~-C~~~~Cp-~W~~~~Ws~CS~tCG-~G~~~R~~~C 487 (656)
..+||.+||.|+|+|.++|+... -..+.+.+|+...+ ++.++ |++.+|| .|..++|+.||.+|| .|.|.|.|+|
T Consensus 151 ~t~cs~aCgKG~q~~iv~C~~~~t~~~~~~~~cettm~ptpe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c 230 (560)
T KOG4597|consen 151 CTMCSEACGKGVQLRIVYCIHGKTWPRVSPDPCETTMAPTPEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTC 230 (560)
T ss_pred eEehhhhhcCCceeeeEEEeccccCCCCCCCccccccCCCCCCCCCcccccCcchhhcccchhhcccccccCCcCceeee
Confidence 11899999999999999999753 44678889987544 35554 9999999 899999999999999 7999999999
Q ss_pred EcC----CcccCCCCCCCCCCCCceeccCCCCCCCCccC-CCCCCCCCCCCccCCCCeEEEEEEeccC---------CCC
Q psy14790 488 QRD----NHVVHDSYCADDPVPARKEICYMAPCPEWITG-QFSAEVGKNPDQKMGKGTAIRDVRCNLG---------DDS 553 (656)
Q Consensus 488 ~~~----~~~v~~~~C~~~~~p~~~~~C~~~~Cp~W~~~-~Ws~~~~~~Cs~~Cg~G~q~R~~~C~~~---------~~~ 553 (656)
... ..+|-. .+....+|..+..|++.-|+.|... .|+. ||+.||.|+++|.|.|... ++.
T Consensus 231 ~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~t-----Cs~rcg~g~~~rdv~c~s~~ge~a~daads~ 304 (560)
T KOG4597|consen 231 EQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYT-----CSARCGAGFLRRDVPCSSVKGEGALDAADSC 304 (560)
T ss_pred ehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCcee-----eccccccceeeccceeeeecccccccccccC
Confidence 732 222333 3444688999999999999999986 9999 9999999999999999876 345
Q ss_pred CCCCCCCCCCcccc----------------CCCCcCCCCEEEEEEEeee-----CCCCCC----CCCCCCCcccccCCCC
Q psy14790 554 LCASIPRPPSVESC----------------VCSVTCGEGTATRDVRCNL-----GDDSLC----ASIPRPPSVETCVVHP 608 (656)
Q Consensus 554 ~C~~~~~p~~~~~C----------------~Cs~tCG~G~~~R~~~C~~-----~~~~~C----~~~~~p~~~~~C~~~~ 608 (656)
.++...+|.+.+.| .+++.||.|+++|.|.|+. .+...| ...++|++.++|...|
T Consensus 305 p~~~~~~~~e~~~cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pad~~pc~~GP 384 (560)
T KOG4597|consen 305 PADEQEKPAECLTCDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPADTRPCAQGP 384 (560)
T ss_pred CcccccCchhhcCCCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCccccccccCC
Confidence 56666677776666 5999999999999999982 223334 3347899999999999
Q ss_pred CCCccccCCCCCCCCCCCCCCCCceeeeecccccccccccCceee
Q psy14790 609 CDDDTLDHYNDIPGSRYDMQDSPYYLWRHGHWTEQWNNCYIGRLW 653 (656)
Q Consensus 609 C~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~Ws~Cs~sCg~G~~~ 653 (656)
|+.. +.|.+|+|++||..||.|-+.
T Consensus 385 C~~e--------------------~rW~~s~wsqCs~eCg~g~~~ 409 (560)
T KOG4597|consen 385 CPCE--------------------PRWAYSPWSQCSGECGGGGNN 409 (560)
T ss_pred CCCc--------------------cceeecchhhhccccCCCCcc
Confidence 9764 789999999999999999764
No 3
>KOG4597|consensus
Probab=99.86 E-value=1.4e-20 Score=195.69 Aligned_cols=192 Identities=31% Similarity=0.636 Sum_probs=158.9
Q ss_pred ccccccCCCeEEEEEEeecCCC----ccccCCCCCccccc-ceeecCCCCCC-CcccCCCc-ccccccCCCeEEEEEEEE
Q psy14790 416 ECSKSCGTGVETRSAVCIDDYG----REVDESQCSAAEKI-IQRVCGTSKCP-QWSVDKWS-ACSVSCGKGERRREIWCQ 488 (656)
Q Consensus 416 ~CS~tCG~G~q~R~~~C~~~~~----~~v~~~~C~~~~~~-~~~~C~~~~Cp-~W~~~~Ws-~CS~tCG~G~~~R~~~C~ 488 (656)
.||+-||.|+++|.+.|....+ ..+++..++...++ +.+.|++.||. .|...+|+ .+++-||.|+++|.|.|.
T Consensus 273 tCs~rcg~g~~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~ 352 (560)
T KOG4597|consen 273 TCSARCGAGFLRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCK 352 (560)
T ss_pred eeccccccceeeccceeeeecccccccccccCCcccccCchhhcCCCCcccCCccchhhhhhhcccccCCceeeeeeeec
Confidence 4999999999999999986544 34555556555555 45569999997 78888998 689999999999999999
Q ss_pred cC-CcccCCCCC----CCCCCCCceeccCCCCCCC---CccCCCCCCCCCCCCccCCCCeEEEEEEeccC--------CC
Q psy14790 489 RD-NHVVHDSYC----ADDPVPARKEICYMAPCPE---WITGQFSAEVGKNPDQKMGKGTAIRDVRCNLG--------DD 552 (656)
Q Consensus 489 ~~-~~~v~~~~C----~~~~~p~~~~~C~~~~Cp~---W~~~~Ws~~~~~~Cs~~Cg~G~q~R~~~C~~~--------~~ 552 (656)
.. ........| ...++|...++|...||+- |.+++|++ |+..||.|.++|.+.|+.. +.
T Consensus 353 ~s~~~~~p~E~C~~a~~sg~~pad~~pc~~GPC~~e~rW~~s~wsq-----Cs~eCg~g~~~r~vica~~~a~~f~v~~p 427 (560)
T KOG4597|consen 353 GSQGRFEPLEACLVACASGPRPADTRPCAQGPCPCEPRWAYSPWSQ-----CSGECGGGGNNREVICACEQACPFEVVDP 427 (560)
T ss_pred CccccccchhhhhhhccCCCCCccccccccCCCCCccceeecchhh-----hccccCCCCcceeEEEeeecCCCcccCCc
Confidence 54 222233344 2247899999999999975 88899999 9999999999999999887 56
Q ss_pred CCCCCCCCCCCcccc---------------CCCCcCCCCEEEEEEEeeeCC----CCCCCCCCCCCcccccCCCCCCCc
Q psy14790 553 SLCASIPRPPSVESC---------------VCSVTCGEGTATRDVRCNLGD----DSLCASIPRPPSVETCVVHPCDDD 612 (656)
Q Consensus 553 ~~C~~~~~p~~~~~C---------------~Cs~tCG~G~~~R~~~C~~~~----~~~C~~~~~p~~~~~C~~~~C~~~ 612 (656)
..|....+|...+.| +|+++||+|.|.|.+.|...+ ...|....+|.+.+.||..|||.-
T Consensus 428 ~~ca~~~r~~~~~s~~~~~c~~~w~sTewsec~~scgGgaqvr~~~cL~ddkm~L~~lc~~~Lkps~k~~cna~pCp~~ 506 (560)
T KOG4597|consen 428 SCCACLPRPKLTQSCCRSDCTITWRSTEWSECPASCGGGAQVRVVVCLKDDKMGLKFLCDEQLKPSEKQDCNACPCPNC 506 (560)
T ss_pred ccccccCCccccccccccccceeeeecccccCchhcCCcceEeeeeecccCcccccccCccccChhhcCCCCCCCCCCc
Confidence 778888888887776 999999999999999998433 568999899999999999999975
No 4
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=99.52 E-value=3.3e-14 Score=127.15 Aligned_cols=94 Identities=38% Similarity=0.666 Sum_probs=86.0
Q ss_pred ccccCccccC--CCCccEEEecCCCCCeeeEEeeccCCCCCCCCcccccCCCCCceEecCceeeeCCcceEEEcceEEEe
Q psy14790 316 QEIRGSHNTS--QYGYTRVLRIPAGSSNLDITQYGYGGTSSDDNYLALSDGETNEPILNGKNVVSKSHKVIVFGGIAIDY 393 (656)
Q Consensus 316 ~~~~g~~~~~--~~g~~~v~~iP~ga~~i~i~~~~~s~~~~~~~~la~~~~~~~~~~lng~~~~~~~~~~~~~~g~~~~y 393 (656)
++|+|+|++. ..||..+++||+||++|+|.|...+ .|||||++. .++|+|||++.++++++ +.++|+.+.|
T Consensus 1 k~V~G~f~~~~~~~gY~~v~~IP~GA~nI~I~e~~~s-----~n~Lalk~~-~g~y~lNg~~~i~~~~~-~~~aGt~~~Y 73 (114)
T PF05986_consen 1 KTVSGTFNESRLGYGYNKVVTIPAGARNIRITERRPS-----SNYLALKNS-DGKYVLNGNWVISWPGT-YSVAGTTFEY 73 (114)
T ss_pred CEEEeEeCCCCCCCCceEEEECCCCceEEEEEEeecC-----ccEEEEEec-CCcEEEcCCccccCCcC-EEeCCeEEEE
Confidence 4688999985 4899999999999999999999865 699999998 69999999999999985 9999999999
Q ss_pred ccCCCceeeEecCCCCceeeeec
Q psy14790 394 TGTDAVVERINCSRPLTKELIVE 416 (656)
Q Consensus 394 ~~~~~~~e~i~~~gp~~~~~~~~ 416 (656)
.+.+...|+|.+.||+.++++++
T Consensus 74 ~~~~~~~E~i~~~GPl~e~l~v~ 96 (114)
T PF05986_consen 74 SRSDDNLERITAPGPLTEDLIVQ 96 (114)
T ss_pred EecCCCCEEEEcCCCCCCCEEEE
Confidence 99888899999999999999874
No 5
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=99.09 E-value=1.6e-10 Score=88.67 Aligned_cols=53 Identities=43% Similarity=1.131 Sum_probs=48.7
Q ss_pred CCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCCC
Q psy14790 156 WGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCA 208 (656)
Q Consensus 156 Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~Cp 208 (656)
|+.|++|+.||.+||.|+++|.|.|.++.+..++..|.+...+.+.|+..+||
T Consensus 1 ~~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~~C~ 53 (53)
T smart00209 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53 (53)
T ss_pred CCCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCCCCc
Confidence 78899999999999999999999999887777889999988899999998885
No 6
>PTZ00087 thrombosponding-related protein; Provisional
Probab=98.93 E-value=7.1e-10 Score=108.39 Aligned_cols=54 Identities=24% Similarity=0.670 Sum_probs=47.3
Q ss_pred CcCCCCCCCCCCcCCCCCCC--CCceEEEEEeecCCCCCCCccc-cCCCeeeeccCcC--CCCC
Q psy14790 151 PRDGGWGPWQSFGSCSRPCG--GGIKKSYRECSSPAPANGGKYC-VGKRVRYRSCNTR--DCAP 209 (656)
Q Consensus 151 ~~~g~Ws~Ws~Ws~CS~tCG--~G~~~r~R~C~~p~p~~gg~~C-~G~~~~~~~Cn~~--~Cp~ 209 (656)
..+..||+||+|+.||++|| +|+|.|+|.|++| +| .| .|...|.+.|+.. +||.
T Consensus 228 k~~~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNP----gG-dC~~G~s~ETr~CN~~cPPCp~ 286 (340)
T PTZ00087 228 KKNMFYTEWGEWSNCSMECDHPDNVQIRERKCAHP----SG-DCFKGDLKETRPCQVPLPPCNS 286 (340)
T ss_pred cCCCCCCCCCCCCCcCcccCCCCCeEeEEEeCCCC----CC-CCCCCchhhcccccCCCCCCCC
Confidence 35668999999999999999 6999999999998 24 89 5999999999976 6865
No 7
>KOG3538|consensus
Probab=98.86 E-value=1.1e-08 Score=121.88 Aligned_cols=57 Identities=33% Similarity=0.709 Sum_probs=48.7
Q ss_pred CCCCcCCCCEEEEEEEeeeCCCCCCCCCCCCCcccccCCCCCCCccccCCCCCCCCCCCCCCCCceeeeecccccccccc
Q psy14790 568 VCSVTCGEGTATRDVRCNLGDDSLCASIPRPPSVETCVVHPCDDDTLDHYNDIPGSRYDMQDSPYYLWRHGHWTEQWNNC 647 (656)
Q Consensus 568 ~Cs~tCG~G~~~R~~~C~~~~~~~C~~~~~p~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~Ws~Cs~sC 647 (656)
+||++||+|+|.|.+.|..... . ....+.|+.++|+. .|.+++|++||++|
T Consensus 775 ~Cs~~cg~g~~~~~~~C~~~~~-~------~~~~~~C~~~~c~~----------------------~w~~~~w~~Cs~~c 825 (845)
T KOG3538|consen 775 ECSASCGGGVQSRKVSCRRTFD-E------VPRWRKCNLQPCPP----------------------RWVAGEWSECSRTC 825 (845)
T ss_pred ccccccCCCceecccceeeccc-c------CccccccCCCCCCC----------------------cceecCCchhhhhh
Confidence 8999999999999999984433 2 36889999999943 49999999999999
Q ss_pred cCceee
Q psy14790 648 YIGRLW 653 (656)
Q Consensus 648 g~G~~~ 653 (656)
|.|+++
T Consensus 826 g~g~~~ 831 (845)
T KOG3538|consen 826 GSGLRA 831 (845)
T ss_pred cCcccc
Confidence 999876
No 8
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=98.82 E-value=2.7e-09 Score=80.32 Aligned_cols=49 Identities=39% Similarity=1.030 Sum_probs=42.7
Q ss_pred CCCCCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCC
Q psy14790 157 GPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207 (656)
Q Consensus 157 s~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~C 207 (656)
|+|++|+.||++||.|++.|.|.|..+ ..++..|.+...+++.|+.++|
T Consensus 1 s~Ws~Ws~CS~tCg~G~~~R~r~c~~~--~~~~~~C~~~~~~~~~C~~~~C 49 (49)
T PF00090_consen 1 SEWSEWSPCSATCGGGVQTRTRTCQSP--PDGGESCPGPDQETRPCNMQPC 49 (49)
T ss_dssp TSBSS--SSSSSSSSEEEEEEECSCTT--BTTSSTCHSCSEEEEEEECSSS
T ss_pred CccCcCCCCccccccCCceeEEEECcc--cCCCCCCCCCCcCcCccCcCcC
Confidence 579999999999999999999999886 5678899999999999998876
No 9
>KOG3539|consensus
Probab=98.82 E-value=6.6e-09 Score=109.54 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=110.7
Q ss_pred CCCCccc--CCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCC---CCCCceeccCCCCCCCCccCCCCCCCCCCCCc
Q psy14790 460 KCPQWSV--DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADD---PVPARKEICYMAPCPEWITGQFSAEVGKNPDQ 534 (656)
Q Consensus 460 ~Cp~W~~--~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~---~~p~~~~~C~~~~Cp~W~~~~Ws~~~~~~Cs~ 534 (656)
|=|.|.+ +.|.-|+.+|+-+.+.+...=-.+...-++..+... ..|.+...+.+.++|.--+++|.. ++.
T Consensus 246 PSPDW~vGv~sldLC~~~csW~e~~~~~L~P~DAGTDsG~ty~spn~pteP~~~i~~ITs~~p~~P~s~FY~-----pks 320 (508)
T KOG3539|consen 246 PSPDWVVGVSSLDLCLGDCSWGEKKTHELYPWDAGTDSGFTYMSPNSPTEPQDVIYRITSPYPLHPASPFYD-----PKS 320 (508)
T ss_pred CCCceEEeechhhhccCCCcchhhceeeecccccCCCCCccccCCCCCCCCCCCceEeccCCCCCCcccccC-----ccc
Confidence 4455775 899999999998887776654322222234444422 334445566677888655567777 999
Q ss_pred cCCCCeEEEEEEeccCCCCCCCCCCCC--------------CCcccc---------CCCCcCCCCEEEEEEEee-eCC--
Q psy14790 535 KMGKGTAIRDVRCNLGDDSLCASIPRP--------------PSVESC---------VCSVTCGEGTATRDVRCN-LGD-- 588 (656)
Q Consensus 535 ~Cg~G~q~R~~~C~~~~~~~C~~~~~p--------------~~~~~C---------~Cs~tCG~G~~~R~~~C~-~~~-- 588 (656)
.|+.++.++.+.=.......|+..... .....| +|+++||.|.+.|.|.=+ ...
T Consensus 321 ~~lpplAt~~l~r~~~~e~nc~edd~~~~~~~~~~~~~~~~e~p~eC~vs~ws~Ws~C~~sCGkg~r~R~R~yv~p~~a~ 400 (508)
T KOG3539|consen 321 KCLPPLATVQLRRKKLYELNCNEDDEQAEKCMNPTHLSAEHETPLECEVSEWSQWSECSKSCGKGIRIRIRAYVNPIPAS 400 (508)
T ss_pred ccCCchhhhhHHHhhhhhhccCcchHHHhhhcCccccccccCCcccceecccccchhhhhccCCCceEEEEEEecccccc
Confidence 999998776654333323344432211 112234 999999999999988333 222
Q ss_pred CCCCCCCCCCCcccccCCCCCCC-------ccccC-------CCCCCCCCCCCCCCCceeeeecccccccccccCceee
Q psy14790 589 DSLCASIPRPPSVETCVVHPCDD-------DTLDH-------YNDIPGSRYDMQDSPYYLWRHGHWTEQWNNCYIGRLW 653 (656)
Q Consensus 589 ~~~C~~~~~p~~~~~C~~~~C~~-------~~~~~-------~~~~~~~~~~~~~~~~~~w~~~~Ws~Cs~sCg~G~~~ 653 (656)
...|. +.+.+.+.|...-|.. ...|. ....++.--+++++.. ..|++||+||++||.|+++
T Consensus 401 ~~~~~--pe~~e~~~Cva~~c~~a~~~~~~~~~e~~e~~~~~~a~~~~~s~~~~~Cr~--s~Ws~WseCs~sCG~G~~~ 475 (508)
T KOG3539|consen 401 NGSCC--PELVEEKKCVAKKCECAPSIQKLRNREAAESRRSENARKPSDSEQFPGCRV--SPWSEWSECSKSCGGGIME 475 (508)
T ss_pred cCCCC--cchhhhhhcccccccccchhhhhhhhhhhhccchhhccCCCCcccCCCCcc--cccchhhhhhhhcCCccee
Confidence 22333 3557888898777765 10000 0001111112334444 4559999999999999986
No 10
>KOG3607|consensus
Probab=98.82 E-value=6.2e-09 Score=119.33 Aligned_cols=243 Identities=25% Similarity=0.468 Sum_probs=148.9
Q ss_pred CCCccCCCCCCcccccchHHHHHHHhhhccccccccccccCCCcccccccccCCCCCCCCCCCCCCCcccC-CCCCCCCC
Q psy14790 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCA-DLPRPAER 79 (656)
Q Consensus 1 m~~~~~~~~~~~~wS~Cs~~~~~~fl~~~~~~ws~Cs~~CG~G~r~r~~~Cl~~~p~~~~~~~~~~~~~~~-~~~~Pg~~ 79 (656)
| +.......+..||.||.+++..||..+ ...||.+.|..... +....|. ....+|
T Consensus 354 M-~~~~~~~~~~~FS~CS~~~~~~~~~~~------------------~~~cl~n~p~p~~~---~~~~~CGNg~vE~g-- 409 (716)
T KOG3607|consen 354 M-PEETGFYIPKKFSNCSYQDFESFLLKG------------------GGSCLLNLPSPEKI---FSGPVCGNGVVEEG-- 409 (716)
T ss_pred c-ccccCcCcccccccchHHHHHHHHhcC------------------CcceEecCCCcccc---cCCCccCCcccccC--
Confidence 5 343444669999999999999999998 88999997654332 2232231 111122
Q ss_pred CCCccccCCCCceeCCCCcCccceeeccCCCCCC----------------CccccCC-------------------CCCC
Q psy14790 80 EPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGER----------------EGCHTQT-------------------SPWA 124 (656)
Q Consensus 80 ~qC~~~~~g~~~~~c~~~~~~C~~lwC~~~~~~~----------------~~C~t~~-------------------~p~~ 124 (656)
|+| ++ | ....|.. ..|..+.|....+.. ..||... ....
T Consensus 410 EEC--DC-G-~~~eC~~--~cC~~~tCkL~pga~Ca~G~CC~~C~~~p~G~~CR~~~~eCDlpE~C~G~S~~Cp~d~~~~ 483 (716)
T KOG3607|consen 410 EEC--DC-G-TPEECSN--LCCCASTCKLKPGAQCALGLCCKDCKFLPAGTVCRQAKNECDLPEYCNGTSSQCPPDLYVQ 483 (716)
T ss_pred CcC--CC-C-ChHHcCc--cccccccccccCCCCCCCCCchhccccccCcceecccCCccccccccCCCCCCCCCCceeE
Confidence 666 44 3 3445555 455555555554433 1222111 1266
Q ss_pred CCCcccCCCeeeecCeEeccCCCCCCCcCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCC--ccccCC-Ceeeec
Q psy14790 125 DGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGG--KYCVGK-RVRYRS 201 (656)
Q Consensus 125 ~Gt~C~G~~~wC~~g~C~~~~~~~~~~~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg--~~C~G~-~~~~~~ 201 (656)
||++|.+...+|+.|.|.+...+ |....|.+.+.....|.......|. ..|.-. ...+..
T Consensus 484 dG~~C~~~~g~Cy~G~C~t~~~Q-----------------C~~i~g~~a~~a~~~Cy~~vn~~gd~~GnCg~~~~~~~~~ 546 (716)
T KOG3607|consen 484 DGIPCQGGQGYCYDGRCHTRDRQ-----------------CQKIWGPGARAAPKYCYEKVNTPGDRFGNCGQDRNGTYIK 546 (716)
T ss_pred CCEecCCCcceecCCCCCCHHHH-----------------HHHHhCCCcccCchhhhhhccCCCCCCccccccCCCCccc
Confidence 89999666789999999987655 8888898988888888754333322 346432 555566
Q ss_pred cCcCCCCCCCCcccchhhccccCccCCCCCCCCCceeccccCCCcccccccccccccceEEE-ecCcccCCCCCCCCCcc
Q psy14790 202 CNTRDCAPGTMDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGGDNACKLYCRVAQSSAYYL-LKDKVIDGTPCGPDTFD 280 (656)
Q Consensus 202 Cn~~~Cp~~~~~~r~~qC~~~~~~~~~~~~~~~~~~W~p~~~~~~~~C~l~C~~~~~~~~~~-~~~~v~dGt~C~~~~~~ 280 (656)
|+.. ..-....||......+... ....++.... . .++|.......-.. -.+.|.|||.|+++.
T Consensus 547 c~~~-----d~~CG~l~C~~~~~~P~~~----~~~~~~~~~~---~--~~~C~~~~~~~~~~~D~g~V~dGt~Cg~~~-- 610 (716)
T KOG3607|consen 547 CEIR-----DVLCGKLQCQNGMTIPILG----EHVTEIASTI---Q--DLTCWGTHYHLGMDVDLGLVKDGTSCGPGM-- 610 (716)
T ss_pred cccC-----CcccceEEEecCccccccc----cccceeeccc---c--cccccceeeccCCCCCcceecCCCccCCCc--
Confidence 6432 2223337888777655321 1112221111 1 56776443221111 347899999999986
Q ss_pred cccCCeeecccccccccCCCccccc---cccC
Q psy14790 281 VCINGKCMKAGCNHVLDSDSKLDFC---GVCE 309 (656)
Q Consensus 281 ~Ci~G~C~~~gCd~~l~S~~~~D~C---gvC~ 309 (656)
||+++.|+.+. ++++......| |||+
T Consensus 611 vC~~~~C~~~~---v~~~~~~~~~C~g~GVCn 639 (716)
T KOG3607|consen 611 ICINHRCLSAS---VLNSSCCPTTCNGHGVCN 639 (716)
T ss_pred eecCCcchhhh---hhcccccccccCCCcccC
Confidence 99999999883 77777777777 6775
No 11
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=98.78 E-value=8.1e-09 Score=79.07 Aligned_cols=51 Identities=31% Similarity=0.701 Sum_probs=42.8
Q ss_pred ccCCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccCCCCCC
Q psy14790 465 SVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517 (656)
Q Consensus 465 ~~~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~~~~Cp 517 (656)
.+++|++||++||.|+|+|.|.|+.....++...|....+ +.+.|+..+||
T Consensus 3 ~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~--~~~~C~~~~C~ 53 (53)
T smart00209 3 EWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDV--ETRACNEQPCP 53 (53)
T ss_pred CccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCC--EEeecCCCCCc
Confidence 3599999999999999999999986655578889985332 88999999986
No 12
>KOG3539|consensus
Probab=98.71 E-value=3.3e-08 Score=104.34 Aligned_cols=181 Identities=19% Similarity=0.261 Sum_probs=106.0
Q ss_pred ccccccCCCeEEEEEEeecCCCccccCCCCCcc----cccceeecCCCCCCCcccCCCcccccccCCCeEEEEEEEEcCC
Q psy14790 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAA----EKIIQRVCGTSKCPQWSVDKWSACSVSCGKGERRREIWCQRDN 491 (656)
Q Consensus 416 ~CS~tCG~G~q~R~~~C~~~~~~~v~~~~C~~~----~~~~~~~C~~~~Cp~W~~~~Ws~CS~tCG~G~~~R~~~C~~~~ 491 (656)
-|+.+|+=|.+.+...---..|. -++..+... .+++...+.+.++|.--+++|..++..|+.++.++.+.=..
T Consensus 259 LC~~~csW~e~~~~~L~P~DAGT-DsG~ty~spn~pteP~~~i~~ITs~~p~~P~s~FY~pks~~lpplAt~~l~r~~-- 335 (508)
T KOG3539|consen 259 LCLGDCSWGEKKTHELYPWDAGT-DSGFTYMSPNSPTEPQDVIYRITSPYPLHPASPFYDPKSKCLPPLATVQLRRKK-- 335 (508)
T ss_pred hccCCCcchhhceeeecccccCC-CCCccccCCCCCCCCCCCceEeccCCCCCCcccccCcccccCCchhhhhHHHhh--
Confidence 49999988877666533211111 122333332 12244456677888333389999999999998777654221
Q ss_pred cccCCCCCCCCCCCCceeccCCC-------CCCC-CccCCCCCCCCCCCCccCCCCeEEEEEEeccC----CCCCCCCCC
Q psy14790 492 HVVHDSYCADDPVPARKEICYMA-------PCPE-WITGQFSAEVGKNPDQKMGKGTAIRDVRCNLG----DDSLCASIP 559 (656)
Q Consensus 492 ~~v~~~~C~~~~~p~~~~~C~~~-------~Cp~-W~~~~Ws~~~~~~Cs~~Cg~G~q~R~~~C~~~----~~~~C~~~~ 559 (656)
+....|... ....+.|.+. .+|. ..+++||+ |++|+++||+|.+.|.|.-++. .++.|..
T Consensus 336 --~~e~nc~ed--d~~~~~~~~~~~~~~~~e~p~eC~vs~ws~--Ws~C~~sCGkg~r~R~R~yv~p~~a~~~~~~pe-- 407 (508)
T KOG3539|consen 336 --LYELNCNED--DEQAEKCMNPTHLSAEHETPLECEVSEWSQ--WSECSKSCGKGIRIRIRAYVNPIPASNGSCCPE-- 407 (508)
T ss_pred --hhhhccCcc--hHHHhhhcCccccccccCCcccceeccccc--chhhhhccCCCceEEEEEEecccccccCCCCcc--
Confidence 122345421 1122233332 3554 55566666 6669999999999999977766 1222221
Q ss_pred CCCCccc----------------------------------------c---------CCCCcCCCCEEEEEEEee-eCCC
Q psy14790 560 RPPSVES----------------------------------------C---------VCSVTCGEGTATRDVRCN-LGDD 589 (656)
Q Consensus 560 ~p~~~~~----------------------------------------C---------~Cs~tCG~G~~~R~~~C~-~~~~ 589 (656)
+.+.+. | +||++||.|+++|+|..+ ....
T Consensus 408 -~~e~~~Cva~~c~~a~~~~~~~~~e~~e~~~~~~a~~~~~s~~~~~Cr~s~Ws~WseCs~sCG~G~~~R~rt~~n~~~r 486 (508)
T KOG3539|consen 408 -LVEEKKCVAKKCECAPSIQKLRNREAAESRRSENARKPSDSEQFPGCRVSPWSEWSECSKSCGGGIMERYRTVLNHFKR 486 (508)
T ss_pred -hhhhhhcccccccccchhhhhhhhhhhhccchhhccCCCCcccCCCCcccccchhhhhhhhcCCcceehhhhhhccccc
Confidence 111222 4 999999999999999887 2334
Q ss_pred CCCCCCC---CCCcccccCCCCC
Q psy14790 590 SLCASIP---RPPSVETCVVHPC 609 (656)
Q Consensus 590 ~~C~~~~---~p~~~~~C~~~~C 609 (656)
+.|.... +-.+.+ |+..+|
T Consensus 487 ~~c~~~t~~k~~~~~r-C~~~~c 508 (508)
T KOG3539|consen 487 KQCPQFTSCKKKKTIR-CNGHDC 508 (508)
T ss_pred ccCcchhhhhhccccc-ccCCCC
Confidence 5666532 112233 766655
No 13
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=98.50 E-value=4.5e-08 Score=73.61 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=36.5
Q ss_pred CCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccCCCCC
Q psy14790 467 DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516 (656)
Q Consensus 467 ~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~~~~C 516 (656)
++|++||++||.|+|+|.|.|+.. ......|.. ...++++|++.+|
T Consensus 4 s~Ws~CS~tCg~G~~~R~r~c~~~--~~~~~~C~~--~~~~~~~C~~~~C 49 (49)
T PF00090_consen 4 SEWSPCSATCGGGVQTRTRTCQSP--PDGGESCPG--PDQETRPCNMQPC 49 (49)
T ss_dssp SS--SSSSSSSSEEEEEEECSCTT--BTTSSTCHS--CSEEEEEEECSSS
T ss_pred CcCCCCccccccCCceeEEEECcc--cCCCCCCCC--CCcCcCccCcCcC
Confidence 899999999999999999999865 457778873 3334899998887
No 14
>PTZ00087 thrombosponding-related protein; Provisional
Probab=97.84 E-value=1.3e-05 Score=78.93 Aligned_cols=51 Identities=24% Similarity=0.558 Sum_probs=39.8
Q ss_pred Ccc-cCCCcccccccC--CCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccCCC--CCCCC
Q psy14790 463 QWS-VDKWSACSVSCG--KGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMA--PCPEW 519 (656)
Q Consensus 463 ~W~-~~~Ws~CS~tCG--~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~~~--~Cp~W 519 (656)
.|+ |++|++||++|| +|+|+|+|.|..+. ..|. .....+++.|+.. |||.+
T Consensus 232 ~WSeWSeWS~CSkTCGgggGVQtRtRtCTNPg-----GdC~-~G~s~ETr~CN~~cPPCp~~ 287 (340)
T PTZ00087 232 FYTEWGEWSNCSMECDHPDNVQIRERKCAHPS-----GDCF-KGDLKETRPCQVPLPPCNSL 287 (340)
T ss_pred CCCCCCCCCCcCcccCCCCCeEeEEEeCCCCC-----CCCC-CCchhhcccccCCCCCCCCc
Confidence 576 399999999999 69999999998652 3684 2455688999975 78764
No 15
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.67 E-value=3.2e-05 Score=86.03 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=41.6
Q ss_pred cCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCCCCC
Q psy14790 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPG 210 (656)
Q Consensus 152 ~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~Cp~~ 210 (656)
.+..|++||.||.||.|||.|+|+|+|.|... .|.+.. .+.|+.+.||..
T Consensus 236 ~~a~c~~Ws~Ws~Cs~tCg~G~~~R~R~~~~~-------~C~~~~--~~~C~~~~Cp~~ 285 (576)
T PTZ00441 236 RTASCGPWDEWTPCSVTCGKGTHSRSRPILHE-------GCTTHM--VEECEEEECPVE 285 (576)
T ss_pred ccccCCCCCCCCCCccccCCCceeeeecccCC-------CCcchh--hhccccCCCCCC
Confidence 34567899999999999999999999999542 487554 799999999874
No 16
>KOG1480|consensus
Probab=97.54 E-value=0.00012 Score=82.28 Aligned_cols=116 Identities=29% Similarity=0.661 Sum_probs=81.5
Q ss_pred CCcccc-CCCCceeCCCCcCccceeeccCCCCCCCccccCCCCCCCCCcccCCCeeeecCeEeccCCCCCCCcCCCCCCC
Q psy14790 81 PCEGPC-NAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPW 159 (656)
Q Consensus 81 qC~~~~-~g~~~~~c~~~~~~C~~lwC~~~~~~~~~C~t~~~p~~~Gt~C~G~~~wC~~g~C~~~~~~~~~~~~g~Ws~W 159 (656)
++...+ +|.++.+..| . +-.+-|...-..+...-++.+|..+|..|. ++-+.+-.|+. +++++|+|+.|
T Consensus 214 ~~v~vyv~ggwsswt~w--~-~c~~rc~~~~q~rtrtc~npApln~G~~c~--g~s~~~~~c~~-----~c~~dg~w~~w 283 (909)
T KOG1480|consen 214 ATVQVYVNGGWSEWTEW--S-TCNVRCGRGHQKRTRTCTNPAPLNGGAFCE--GESVQKISCTV-----LCPVDGGWSSW 283 (909)
T ss_pred eEEEEEEcCcccccccc--e-eeeecccccccccCCCCCCccccCCccccc--ccccccccCcc-----cccccCceeeh
Confidence 444333 4666666666 2 333334333222222335667777888883 33345555554 78999999999
Q ss_pred CCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCCCC
Q psy14790 160 QSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209 (656)
Q Consensus 160 s~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~Cp~ 209 (656)
+.|+.|+..|- ..|+|.|..|+|.+||+.|.|.......|...-|-.
T Consensus 284 s~ws~c~~~c~---~~r~r~ct~p~p~ngg~~c~g~~~~s~~c~~glc~~ 330 (909)
T KOG1480|consen 284 SDWSACSSECH---HYRTRECTAPPPMNGGKPCFGLDLMSQNCTDGLCTA 330 (909)
T ss_pred hhhhhccCccc---cceeeeeccCCcccCCccccCccccCCCCccccccc
Confidence 99999999887 789999999999999999999999888887776654
No 17
>KOG1480|consensus
Probab=97.42 E-value=0.00011 Score=82.33 Aligned_cols=58 Identities=40% Similarity=0.989 Sum_probs=53.0
Q ss_pred CcCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCCccccCCCeeeeccCcCCCCC
Q psy14790 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209 (656)
Q Consensus 151 ~~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg~~C~G~~~~~~~Cn~~~Cp~ 209 (656)
-++|+|++|++|+.|..-||.|.+.|+|.|.+|+|.++|.+|.|.......|.. .|+.
T Consensus 219 yv~ggwsswt~w~~c~~rc~~~~q~rtrtc~npApln~G~~c~g~s~~~~~c~~-~c~~ 276 (909)
T KOG1480|consen 219 YVNGGWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPLNGGAFCEGESVQKISCTV-LCPV 276 (909)
T ss_pred EEcCcccccccceeeeecccccccccCCCCCCccccCCcccccccccccccCcc-cccc
Confidence 389999999999999999999999999999999999999999999998888754 5654
No 18
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=97.35 E-value=0.00011 Score=67.78 Aligned_cols=131 Identities=29% Similarity=0.566 Sum_probs=81.6
Q ss_pred CCCcccCCCeeeecCeEeccCCCCCCCcCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCC--ccccCCCeeeecc
Q psy14790 125 DGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGG--KYCVGKRVRYRSC 202 (656)
Q Consensus 125 ~Gt~C~G~~~wC~~g~C~~~~~~~~~~~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg--~~C~G~~~~~~~C 202 (656)
||++|.+...+|+.|.|.....+ |....|.+.+.....|.......|. -+|......+..|
T Consensus 1 dG~pC~~~~~yCy~G~C~t~~~Q-----------------C~~lfG~~a~~A~~~Cy~~~N~~Gd~~GnCg~~~~~~~~C 63 (137)
T smart00608 1 DGTPCDNGQGYCYNGRCPTRDNQ-----------------CQALFGPGAKVAPDSCYEELNTKGDRFGNCGRENSTYIPC 63 (137)
T ss_pred CCcCcCCCCEEeECCCcCCcchh-----------------hHhhhCCCCcccChhHhHHHhhCCCceeecCCCCCcccCC
Confidence 68999555589999999987765 9999999999999999863222222 3565444556667
Q ss_pred CcC--CCCCCCCcccchhhccccCccCCCCCCCCCceeccccCCCcccccccccccccce--EEEecCcccCCCCCCCCC
Q psy14790 203 NTR--DCAPGTMDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGGDNACKLYCRVAQSSA--YYLLKDKVIDGTPCGPDT 278 (656)
Q Consensus 203 n~~--~Cp~~~~~~r~~qC~~~~~~~~~~~~~~~~~~W~p~~~~~~~~C~l~C~~~~~~~--~~~~~~~v~dGt~C~~~~ 278 (656)
..+ .|.. .+|......+.... ...+.+... . .+.|....... -....+.|.|||.|+.++
T Consensus 64 ~~~dv~CGk-------L~C~~~~~~p~~~~--~~~~~~~~~-~------~~~C~~~~~~~~~~~~d~g~V~dGT~CG~~k 127 (137)
T smart00608 64 APEDVKCGK-------LQCTNVSSLPLLGE--HATVIYSNI-G------GLVCWSLDYHLGSDSTDLGMVKDGTKCGPGK 127 (137)
T ss_pred Chhccceee-------EEecCCCccccccC--cceEEEecc-C------CCEEEEeeECCCCCCCCccccCCCCCcCCCC
Confidence 543 4655 77766554332211 111222221 1 23454321110 011346899999999886
Q ss_pred cccccCCeeecc
Q psy14790 279 FDVCINGKCMKA 290 (656)
Q Consensus 279 ~~~Ci~G~C~~~ 290 (656)
||++++|+.+
T Consensus 128 --vC~n~~Cv~~ 137 (137)
T smart00608 128 --VCINGQCVDV 137 (137)
T ss_pred --ccCCCCcccC
Confidence 9999999763
No 19
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.30 E-value=0.00018 Score=80.20 Aligned_cols=47 Identities=36% Similarity=0.843 Sum_probs=38.1
Q ss_pred CCCCCcccCCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccCCCCCCC
Q psy14790 459 SKCPQWSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPE 518 (656)
Q Consensus 459 ~~Cp~W~~~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~~~~Cp~ 518 (656)
..|..| ++||+||+|||.|+|+|+|.|.. ..|... .++.|++..||.
T Consensus 238 a~c~~W--s~Ws~Cs~tCg~G~~~R~R~~~~-------~~C~~~----~~~~C~~~~Cp~ 284 (576)
T PTZ00441 238 ASCGPW--DEWTPCSVTCGKGTHSRSRPILH-------EGCTTH----MVEECEEEECPV 284 (576)
T ss_pred ccCCCC--CCCCCCccccCCCceeeeecccC-------CCCcch----hhhccccCCCCC
Confidence 446678 99999999999999999999963 247522 368999999997
No 20
>KOG3658|consensus
Probab=85.11 E-value=7 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCCCcccccchHHHHHHHhhhc
Q psy14790 7 NYTYPWSWSNCSRHYLTEFLEWQ 29 (656)
Q Consensus 7 ~~~~~~~wS~Cs~~~~~~fl~~~ 29 (656)
...+.-.||.||.+.|..-|+.+
T Consensus 434 d~~NN~kFSpCS~ksI~~VL~~k 456 (764)
T KOG3658|consen 434 DKPNNKKFSPCSLKSISKVLESK 456 (764)
T ss_pred cCccCcccCcchHHHHHHHHHHh
Confidence 34556789999999999999988
No 21
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=84.17 E-value=0.88 Score=42.08 Aligned_cols=20 Identities=45% Similarity=0.946 Sum_probs=18.0
Q ss_pred CCCCCcccCCCeeeecCeEec
Q psy14790 123 WADGTPCYGATHWCQRGSCVA 143 (656)
Q Consensus 123 ~~~Gt~C~G~~~wC~~g~C~~ 143 (656)
..+||.| |++|.|.+++|+.
T Consensus 117 V~dGT~C-G~~kvC~n~~Cv~ 136 (137)
T smart00608 117 VKDGTKC-GPGKVCINGQCVD 136 (137)
T ss_pred cCCCCCc-CCCCccCCCCccc
Confidence 4489999 9999999999985
No 22
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=60.57 E-value=4.5 Score=36.32 Aligned_cols=41 Identities=34% Similarity=0.860 Sum_probs=26.1
Q ss_pred ccccccccccccceEEEecCcccCCCCCCCCCcccccCCeeec
Q psy14790 247 NACKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGKCMK 289 (656)
Q Consensus 247 ~~C~l~C~~~~~~~~~~~~~~v~dGt~C~~~~~~~Ci~G~C~~ 289 (656)
..|..+|+..+. ........++|||||+.. .++|.+|.|..
T Consensus 73 ~~Ctf~C~~~~~-~~~~~~~~LpdgtPCg~~-~~~C~~G~Cv~ 113 (118)
T PF12115_consen 73 KNCTFTCKEHNN-GFTNVTLRLPDGTPCGPN-GQTCKNGKCVG 113 (118)
T ss_pred cCcEEEEEeccC-CCcceeEeCCCCCccCCC-cCEECCCccCC
Confidence 459999992111 122222239999999943 25888888865
No 23
>PF08516 ADAM_CR: ADAM cysteine-rich; InterPro: IPR006586 An ADAM is a transmembrane protein that contains a disintegrin and metalloprotease domain (MEROPS peptidase family M12B). All members of the ADAM family display a common domain organisation - a pro-domain, the metalloprotease, disintigrin, cysteine-rich, epidermal-growth factor like, and transmembrane domains and a C-terminal cytoplasmic tail. They possess four potential functions: proteolysis, cell adhesion, cell fusion, and cell signalling. ADAMs are membrane-anchored proteases that proteolytically modify cell surface and extracellular matrix (ECM) in order to alter cell behaviour. They are responsible for the proteolytic cleavage of transmembrane proteins and release of their extracellular domain [, ]. The ADAM cysteine-rich domain is not found in plant, archaeal, bacterial or viral proteins. The cysteine-rich domain complements the binding capacity of the disintegrin domain, and perhaps imparts specificity to disintegrin domain-mediated interactions. It has been shown that the cysteine-rich domain of ADAM13 regulates the protein's metalloprotease activity []. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2DW2_A 2DW0_B 2DW1_A 3G5C_B 2ERQ_B 2ERO_A 2ERP_B 3K7L_A 2E3X_A 3K7N_A.
Probab=57.33 E-value=1.2 Score=40.09 Aligned_cols=78 Identities=27% Similarity=0.572 Sum_probs=46.9
Q ss_pred CCCcccCCCeeeecCeEeccCCCCCCCcCCCCCCCCCCcCCCCCCCCCceEEEEEeecCCCCCCC--ccccCCCeeeecc
Q psy14790 125 DGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGG--KYCVGKRVRYRSC 202 (656)
Q Consensus 125 ~Gt~C~G~~~wC~~g~C~~~~~~~~~~~~g~Ws~Ws~Ws~CS~tCG~G~~~r~R~C~~p~p~~gg--~~C~G~~~~~~~C 202 (656)
||++|.+...+|+.|.|.....+ |....|.+.+.....|.......|. -.|......+..|
T Consensus 1 nG~pC~~~~~yCy~G~C~t~~~Q-----------------C~~lwG~~a~~A~~~Cy~~~N~~gd~~GnCg~~~~~~~~C 63 (117)
T PF08516_consen 1 NGTPCSNGQGYCYNGRCPTRDQQ-----------------CQELWGPGARVAPDSCYEEVNTKGDRFGNCGRDNGTYIPC 63 (117)
T ss_dssp TT-EETTTTEEEBTTBEE-HHHH-----------------HHHHH-TTEEE--GGGGGGGGGSTSSSS-SEEETTEEE--
T ss_pred CCcccCCCCeEEECCcCCCHhHH-----------------HHHHhCCCccccchhHHHHHhcCCCCCCcCCeeCCEECCC
Confidence 68999555589999999987655 8888899999999999843222222 3565556677777
Q ss_pred Cc--CCCCCCCCcccchhhccccCcc
Q psy14790 203 NT--RDCAPGTMDFREEQCVKFNGNN 226 (656)
Q Consensus 203 n~--~~Cp~~~~~~r~~qC~~~~~~~ 226 (656)
.. ..|.. .||......+
T Consensus 64 ~~~d~~CGk-------L~C~~~~~~p 82 (117)
T PF08516_consen 64 EPEDVLCGK-------LQCTGGNEIP 82 (117)
T ss_dssp -TTGGGGSB--------EEEETSTTS
T ss_pred chhCccceE-------EEEeCCCcCC
Confidence 54 35665 7887766544
No 24
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=41.71 E-value=23 Score=31.89 Aligned_cols=41 Identities=29% Similarity=0.620 Sum_probs=28.5
Q ss_pred cccccccccccceEEEecCcccCCCCCCCC--CcccccCCeeecc
Q psy14790 248 ACKLYCRVAQSSAYYLLKDKVIDGTPCGPD--TFDVCINGKCMKA 290 (656)
Q Consensus 248 ~C~l~C~~~~~~~~~~~~~~v~dGt~C~~~--~~~~Ci~G~C~~~ 290 (656)
.|.-+|.......+. . ..+.|||+|.+. ...+|.+|.|...
T Consensus 38 ~C~YYC~~~~~~~W~-~-g~~~dGt~C~y~~g~~G~C~~G~C~~~ 80 (120)
T PF07771_consen 38 GCNYYCWNDDTNGWD-Y-GFYGDGTPCFYNTGQDGVCQDGLCYLT 80 (120)
T ss_pred CcEEEcCCCCCCceE-E-EEecCCCccccCCCCceEecCCEEECC
Confidence 488899854433222 2 356899999765 3579999998775
No 25
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=32.49 E-value=26 Score=31.42 Aligned_cols=21 Identities=48% Similarity=1.132 Sum_probs=18.8
Q ss_pred CCCCCcccC-CCeeeecCeEecc
Q psy14790 123 WADGTPCYG-ATHWCQRGSCVAR 144 (656)
Q Consensus 123 ~~~Gt~C~G-~~~wC~~g~C~~~ 144 (656)
+-||++| | .++.|.+|.|+..
T Consensus 93 LpdgtPC-g~~~~~C~~G~Cv~~ 114 (118)
T PF12115_consen 93 LPDGTPC-GPNGQTCKNGKCVGH 114 (118)
T ss_pred CCCCCcc-CCCcCEECCCccCCC
Confidence 6799999 8 8899999999974
No 26
>KOG3658|consensus
Probab=31.69 E-value=96 Score=35.87 Aligned_cols=52 Identities=35% Similarity=0.648 Sum_probs=35.4
Q ss_pred ecCcccCCCCCCCCCcccccCCeeecccccc-cc-----cCCCccccccc-cC--CCCccccc
Q psy14790 264 LKDKVIDGTPCGPDTFDVCINGKCMKAGCNH-VL-----DSDSKLDFCGV-CE--GNNQTCQE 317 (656)
Q Consensus 264 ~~~~v~dGt~C~~~~~~~Ci~G~C~~~gCd~-~l-----~S~~~~D~Cgv-C~--Gd~s~C~~ 317 (656)
......|||.|. ...+|++|+|...-|-- -| .+......|-+ |- +++++|..
T Consensus 556 ~s~~~~d~t~C~--~~~~C~~G~C~gs~c~~~glesC~c~~~~~~~sC~lcCr~~~~~stC~~ 616 (764)
T KOG3658|consen 556 PSPPKPDGTVCN--ETGVCINGKCIGSCCLMQGLESCFCTETDLDKSCKLCCRKPDDNSTCVP 616 (764)
T ss_pred CCCCCCCCCccc--ccceEeCCcCccHHHHhhCcceeeeccCCchhhHHHHhcCCCCCCCccc
Confidence 456889999998 55799999998765551 11 22222236766 55 78888887
No 27
>smart00193 PTN Pleiotrophin / midkine family. Heparin-binding domain family.
Probab=23.57 E-value=1.1e+02 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=13.0
Q ss_pred CccCCCCCCCCCCCCccCCCCeEEEE
Q psy14790 519 WITGQFSAEVGKNPDQKMGKGTAIRD 544 (656)
Q Consensus 519 W~~~~Ws~~~~~~Cs~~Cg~G~q~R~ 544 (656)
..+++|++ |.+. .|+++|+
T Consensus 50 Ykf~~Wge-----CD~~--Tg~k~Rs 68 (80)
T smart00193 50 YKFESWGE-----CDAN--TGLKTRS 68 (80)
T ss_pred eeccCccc-----cccc--cCccccc
Confidence 56789999 8764 4555554
No 28
>KOG3607|consensus
Probab=21.70 E-value=1.3e+02 Score=35.62 Aligned_cols=69 Identities=20% Similarity=0.415 Sum_probs=44.7
Q ss_pred CCCCC-CCCccccCCCCceeCCCCcCccceeeccCCCCCC---------------CccccCC---------CCCCCCCcc
Q psy14790 75 RPAER-EPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGER---------------EGCHTQT---------SPWADGTPC 129 (656)
Q Consensus 75 ~Pg~~-~qC~~~~~g~~~~~c~~~~~~C~~lwC~~~~~~~---------------~~C~t~~---------~p~~~Gt~C 129 (656)
.+|.. .-|...- +..|..|.+....|..|.|....... ..|.+.+ ....|||.|
T Consensus 528 ~~gd~~GnCg~~~-~~~~~~c~~~d~~CG~l~C~~~~~~P~~~~~~~~~~~~~~~~~C~~~~~~~~~~~D~g~V~dGt~C 606 (716)
T KOG3607|consen 528 TPGDRFGNCGQDR-NGTYIKCEIRDVLCGKLQCQNGMTIPILGEHVTEIASTIQDLTCWGTHYHLGMDVDLGLVKDGTSC 606 (716)
T ss_pred CCCCCCccccccC-CCCccccccCCcccceEEEecCccccccccccceeecccccccccceeeccCCCCCcceecCCCcc
Confidence 34444 4565542 55677777645788888888765421 1344422 224589999
Q ss_pred cCCCeeeecCeEeccC
Q psy14790 130 YGATHWCQRGSCVARD 145 (656)
Q Consensus 130 ~G~~~wC~~g~C~~~~ 145 (656)
|.+|.|..+.|+...
T Consensus 607 -g~~~vC~~~~C~~~~ 621 (716)
T KOG3607|consen 607 -GPGMICINHRCLSAS 621 (716)
T ss_pred -CCCceecCCcchhhh
Confidence 999999999998653
No 29
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=20.64 E-value=71 Score=25.30 Aligned_cols=42 Identities=21% Similarity=0.535 Sum_probs=11.2
Q ss_pred cccCCCcccccccCCCeEEEEEEEEcCCcccCCCCCCCCCCCCceeccC
Q psy14790 464 WSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICY 512 (656)
Q Consensus 464 W~~~~Ws~CS~tCG~G~~~R~~~C~~~~~~v~~~~C~~~~~p~~~~~C~ 512 (656)
...+.|++|... .|+++|+..-.. .+.+..|. +....+.+|.
T Consensus 6 Y~kg~W~eCd~~--T~~rtRt~~LKk---~~~~a~C~--~t~titK~C~ 47 (63)
T PF01091_consen 6 YEKGAWSECDAT--TNTRTRTDTLKK---ALSDASCE--PTRTITKPCK 47 (63)
T ss_dssp -EE----SS-SS--SSS----EE-------SSSSS----SSS-------
T ss_pred cccCCcccCcCc--CCeEEeeeeecc---cccCCCCc--cceEEecccC
Confidence 344899999863 577888876542 23466786 3344455555
Done!