RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14790
         (656 letters)



>gnl|CDD|218841 pfam05986, ADAM_spacer1, ADAM-TS Spacer 1.  This family represents
           the Spacer-1 region from the ADAM-TS family of
           metalloproteinases.
          Length = 114

 Score = 81.9 bits (203), Expect = 8e-19
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 318 IRGSHNTS--QYGYTRVLRIPAGSSNLDITQYGYGGTSSDDNYLAL--SDGETNEPILNG 373
           ++G+   +   +GY  V+ IPAG++++ I +    G     NYLAL  SDGE     LNG
Sbjct: 3   VKGTFTKALLSHGYNDVVTIPAGATHILIRELKASG-----NYLALKNSDGEY---YLNG 54

Query: 374 KNVVSKSHKVIVFGGIAIDYTGTDAVVERINCSRPLTKELIVE 416
              +S S       G   +Y+ +D   ER+  + P  + L V+
Sbjct: 55  NWTISWSGT-FELAGTVFEYSRSDDAPERLTATGPTNEPLTVQ 96


>gnl|CDD|214559 smart00209, TSP1, Thrombospondin type 1 repeats.  Type 1 repeats in
           thrombospondin-1 bind and activate TGF-beta.
          Length = 53

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 156 WGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
           W  W  +  CS  CGGG++   R C SP P NGG  C G+ V  R+CN + C
Sbjct: 1   WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPC 52



 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 469 WSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
           WS CSV+CG G + R   C           C  + V      C   PCP
Sbjct: 7   WSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDV--ETRACNEQPCP 53



 Score = 31.0 bits (70), Expect = 0.14
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP 462
            CS +CG GV+TR+  C     +      C+  E +  R C    CP
Sbjct: 9   PCSVTCGGGVQTRTRSCCSPPPQ-NGGGPCT-GEDVETRACNEQPCP 53



 Score = 28.7 bits (64), Expect = 0.99
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 569 CSVTCGEGTATRDVRCNLGDDSLCASIPRPPSVET--CVVHPCD 610
           CSVTCG G  TR   C                VET  C   PC 
Sbjct: 10  CSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53


>gnl|CDD|239801 cd04273, ZnMc_ADAMTS_like, Zinc-dependent metalloprotease,
           ADAMTS_like subgroup. ADAMs (A Disintegrin And
           Metalloprotease) are glycoproteins, which play roles in
           cell signaling, cell fusion, and cell-cell interactions.
           This particular subfamily represents domain
           architectures that combine ADAM-like metalloproteinases
           with thrombospondin type-1 repeats. ADAMTS (a
           disintegrin and metalloproteinase with thrombospondin
           motifs) proteinases are inhibited by TIMPs (tissue
           inhibitors of metalloproteinases), and they play roles
           in coagulation, angiogenesis, development and
           progression of arthritis. They hydrolyze the von
           Willebrand factor precursor and various components of
           the extracellular matrix.
          Length = 207

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 1   MSRALDNYTYPWSWSNCSRHYLTEFLE 27
           MS  L   T P++WS CSR YLT FL+
Sbjct: 173 MSPTLGANTGPFTWSKCSRRYLTSFLD 199


>gnl|CDD|215709 pfam00090, TSP_1, Thrombospondin type 1 domain. 
          Length = 48

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 154 GGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
             W  W     CS  CG GI+   R C+SP    GG  C G      +C    C
Sbjct: 1   SPWSEW---SPCSVTCGKGIRTRQRTCNSPF---GGPPCTGDVQETEACMMDKC 48



 Score = 32.4 bits (74), Expect = 0.050
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 469 WSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516
           WS CSV+CGKG R R+   +  N       C  D      E C M  C
Sbjct: 6   WSPCSVTCGKGIRTRQ---RTCNSPFGGPPCTGDVQ--ETEACMMDKC 48



 Score = 26.6 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 569 CSVTCGEGTATRDVRCN-LGDDSLCASIPRPPSVETCVVHPC 609
           CSVTCG+G  TR   CN       C    +    E C++  C
Sbjct: 9   CSVTCGKGIRTRQRTCNSPFGGPPCTGDVQE--TEACMMDKC 48


>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
           Provisional.
          Length = 576

 Score = 38.0 bits (88), Expect = 0.016
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 452 IQRVC----GTSKCPQWSVDKWSACSVSCGKGERRR 483
           I +VC     T+ C  W  D+W+ CSV+CGKG   R
Sbjct: 227 IAKVCTEVERTASCGPW--DEWTPCSVTCGKGTHSR 260


>gnl|CDD|213029 cd11375, Peptidase_M54, Peptidase family M54, also called
           archaemetzincins or archaelysins.  Peptidase M54
           (archaemetzincin or archaelysin) is a zinc-dependent
           aminopeptidase that contains the consensus zinc-binding
           sequence HEXXHXXGXXH/D and a conserved Met residue at
           the active site, and is thus classified as a metzincin.
           Archaemetzincins, first identified in archaea, are also
           found in bacteria and eukaryotes, including two human
           members, archaemetzincin-1 and -2 (AMZ1 and AMZ2). AMZ1
           is mainly found in the liver and heart while AMZ2 is
           primarily expressed in testis and heart; both have been
           reported to degrade synthetic substrates and peptides.
           The Peptidase M54 family contains an extended metzincin
           concensus sequence of HEXXHXXGX3CX4CXMX17CXXC such that
           a second zinc ion is bound to four cysteines, thus
           resembling a zinc finger. Phylogenetic analysis of this
           family reveals a complex evolutionary process involving
           a series of lateral gene transfer, gene loss and genetic
           duplication events.
          Length = 173

 Score = 34.6 bits (80), Expect = 0.074
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 282 CINGKCMKAGCNHVLDSDSK-LDFCGVC 308
           C    C+    N + ++D K    C VC
Sbjct: 140 CPYYACVMNFSNSLEETDRKPPYLCPVC 167


>gnl|CDD|114586 pfam05868, Rotavirus_VP7, Rotavirus major outer capsid protein VP7.
            This family consists of several Rotavirus major outer
           capsid protein VP7 sequences. The rotavirus capsid is
           composed of three concentric protein layers. Proteins
           VP4 and VP7 comprise the outer layer. VP4 forms spikes
           and is the viral attachment protein. VP7 is a
           glycoprotein and the major constituent of the outer
           protein layer.
          Length = 249

 Score = 33.3 bits (76), Expect = 0.30
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 198 RYRSCNTR--DCAPGTMDF-----REEQCVKFNGNNFSVPGLSRNVKW--TPKYLG---- 244
              SC     D A  TMDF      E +CVK+  +      L R+ +W    K L     
Sbjct: 78  DDSSCTILAIDVADSTMDFNTFLQSENECVKYAASKKHYIKLPRDEEWFAYSKNLSFCPL 137

Query: 245 GDNACKLYCRVAQSSAYY 262
            D+   +YC     + Y+
Sbjct: 138 SDSLIGIYCDTQLETTYF 155


>gnl|CDD|214743 smart00608, ACR, ADAM Cysteine-Rich Domain. 
          Length = 137

 Score = 30.4 bits (69), Expect = 1.4
 Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 191 YCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGGDNACK 250
            C  +   Y  C   D   G +     QC     N   +P L  +       +GG     
Sbjct: 53  NCGRENGTYIPCAPEDVKCGKL-----QCT----NVSELPLLGEHATVIYSNIGGLV--- 100

Query: 251 LYCRVAQSSAYYLLKDK----VIDGTPCGPDTFDVCINGKC 287
             C    S  Y+L  D     V DGT CGP    VCING+C
Sbjct: 101 --CW---SLDYHLGTDPDIGMVKDGTKCGPGK--VCINGQC 134


>gnl|CDD|182211 PRK10051, csgA, major curlin subunit; Provisional.
          Length = 151

 Score = 30.2 bits (68), Expect = 1.7
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 323 NTSQYG---YTRVLRIPAGSSNLDITQYGYG-----GTSSDDNYLALS-DGETNEPIL-- 371
           N  QYG       L+  A +S+L ITQ+G G     G  SDD+ + L+ +G  N   L  
Sbjct: 46  NIYQYGGGNSALALQSDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQNGFGNSATLDQ 105

Query: 372 -NGKNVVSKSHKVIVFGGIAIDYTGTDAVV 400
            NGKN      +     G A+D T +++ V
Sbjct: 106 WNGKNSDMTVKQFGGGNGAAVDQTASNSSV 135


>gnl|CDD|221428 pfam12115, Salp15, Salivary protein of 15kDa inhibits CD4+ T cell
           activation.  This is a family of 15kDa salivary proteins
           from Acari Arachnids that is induced on feeding and
           assists the parasite to remain attached to its arthropod
           host. By repressing calcium fluxes triggered by TCR
           engagement, Salp15 inhibits CD4+ T cell activation.
           Salp15 shows weak similarity to Inhibin A, a member of
           the TGF-beta superfamily that inhibits the production of
           cytokines and the proliferation of T cells.
          Length = 112

 Score = 29.3 bits (66), Expect = 2.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 249 CKLYCRVAQSSAYYLLKDKVI-DGTPCGPDTFDVCINGKC 287
           C   C    +     +  + + DGTPCGP     C NGKC
Sbjct: 68  CTFTCGKHNNG-GTNITLRQLPDGTPCGPQG-KTCKNGKC 105


>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
           Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
           Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
           (MEKK1) subfamily, catalytic (c) domain. STKs catalyze
           the transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The
           MEKK1 subfamily is part of a larger superfamily that
           includes the catalytic domains of other protein STKs,
           protein tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. MEKK1 is a mitogen-activated protein kinase
           (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
           phosphorylates and activates MAPK kinases (MAPKKs or
           MKKs or MAP2Ks), which in turn phosphorylate and
           activate MAPKs during signaling cascades that are
           important in mediating cellular responses to
           extracellular signals. MEKK1 activates the extracellular
           signal-regulated kinase 1/2 (ERK1/2) and c-Jun
           N-terminal kinase (JNK) pathways by activating their
           respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
           MEKK1 is important in regulating cell survival and
           apoptosis. MEKK1 also plays a role in cell migration,
           tissue maintenance and homeostasis, and wound healing.
          Length = 268

 Score = 28.7 bits (64), Expect = 8.5
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 11  PWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPP 62
           PW+    S H    F      +      H  PG R V+L+C++  P   +PP
Sbjct: 207 PWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQP-EDRPP 257


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.463 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,179,130
Number of extensions: 2953508
Number of successful extensions: 1878
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 26
Length of query: 656
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 553
Effective length of database: 6,369,140
Effective search space: 3522134420
Effective search space used: 3522134420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)