RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14790
(656 letters)
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 206 bits (525), Expect = 2e-60
Identities = 89/337 (26%), Positives = 138/337 (40%), Gaps = 25/337 (7%)
Query: 97 GTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDT-SSLRPRDGG 155
+CQ L C +D ++ C P DGT C G WC +G C + + + G
Sbjct: 44 HLDMCQALSCHTDPLDQSSCSRLLVPLLDGTEC-GVEKWCSKGRCRSLVELTPIAAVHGR 102
Query: 156 WGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFR 215
W W CSR CGGG+ R+C++P PA GG+ CVG ++ CNT+ C ++F
Sbjct: 103 WSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFM 162
Query: 216 EEQCVKFNGNNF-SVPGLSRNVKWTPKYLGGD--NACKLYCRVAQSSAYYLLKDKVIDGT 272
+QC + +G S PG + W C+ CR S D +DGT
Sbjct: 163 SQQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGT 222
Query: 273 PCGPD------TFDVCINGKCMKAGCNHVLDSDSKLDFCGVCEGNNQTCQEIRGSHNTSQ 326
C P T +C+ G C GC+ +DS D C VC G+N TC +GS +
Sbjct: 223 RCMPSGPREDGTLSLCVLGSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGR 282
Query: 327 -YGYTRVLRIPAGSSNLDITQYGYGGTSSDDNYLALSDGETNEPILNGKNVVSKSHK-VI 384
Y L + +++ I +LA+ ++ GK +S +
Sbjct: 283 AREYVTFLTVTPNLTSVYIAN-----HRPLFTHLAVRI--GGRYVVAGKMSISPNTTYPS 335
Query: 385 VFGGIAIDYT-----GTDAVVERINCSRPLTKELIVE 416
+ ++Y +E I PL ++ ++
Sbjct: 336 LLEDGRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQ 372
Score = 34.5 bits (78), Expect = 0.099
Identities = 24/139 (17%), Positives = 38/139 (27%), Gaps = 10/139 (7%)
Query: 417 CSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP---QWS-VDKWSAC 472
C + G E + + + V T +WS S C
Sbjct: 53 CHTDPLDQSSCSRLLVPLLDGTECGVEKWCSKGRCRSLVELTPIAAVHGRWSSWGPRSPC 112
Query: 473 SVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC----PEWITGQFSAEV 528
S SCG G R C C + + E+C C E+++ Q +
Sbjct: 113 SRSCGGGVVTRRRQCNNPRPAFGGRACVGADL--QAEMCNTQACEKTQLEFMSQQCARTD 170
Query: 529 GKNPDQKMGKGTAIRDVRC 547
G+ G +
Sbjct: 171 GQPLRSSPGGASFYHWGAA 189
Score = 32.6 bits (73), Expect = 0.45
Identities = 30/172 (17%), Positives = 39/172 (22%), Gaps = 36/172 (20%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPP--------QPLHNATCADLPRPAEREPC--- 82
S CS CG G + QC PA + + C + C
Sbjct: 110 SPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFMSQQCART 169
Query: 83 --------EGPCNAARW--KFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCY-- 130
G + W C + + + DGT C
Sbjct: 170 DGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGE--SFIMKRGDSFLDGTRCMPS 227
Query: 131 -----GATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSY 177
G C GSC DG Q + C G S
Sbjct: 228 GPREDGTLSLCVLGSCRT------FGCDGRMDSQQVWDRCQVCGGDNSTCSP 273
Score = 31.4 bits (70), Expect = 0.98
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCPQWSVDKWSACSVS 475
CS+SCG GV TR C ++ C A+ + + C+ +
Sbjct: 111 PCSRSCGGGVVTRRRQC-NNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFMSQQCART 169
Query: 476 CGKGERRREIWCQR 489
G+ R
Sbjct: 170 DGQPLRSSPGGASF 183
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 135 bits (342), Expect = 4e-35
Identities = 69/221 (31%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQ 60
MS L + WS C+ +TEFL G G + L Q
Sbjct: 178 MSSILTSIDASKPWSKCTSATITEFL------------DDGHGNCLLDLPRKQILGPEEL 225
Query: 61 PPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQT 120
P Q +L E C VC LWC + C T+
Sbjct: 226 PGQTYDATQQCNLTFGPEYSVC---PGM----------DVCARLWCAVVRQGQMVCLTKK 272
Query: 121 SPWADGTPCYGATHWCQRGSCVARDTSS--LRPRDGGWGPWQSFGSCSRPCGGGIKKSYR 178
P +GTPC G C +G CV + G WG W S+G CSR CGGG++ +YR
Sbjct: 273 LPAVEGTPC-GKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYR 331
Query: 179 ECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQC 219
C++PAP N G+YC GKR YRSC+ C P F
Sbjct: 332 HCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKSFGSAWS 372
Score = 28.9 bits (64), Expect = 5.4
Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 417 CSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVC---------GTSKCPQWS-V 466
C++ V VC+ V+ + C +Q C TS W
Sbjct: 253 CARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSW 312
Query: 467 DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
W CS SCG G + C + YC C + PCP
Sbjct: 313 GSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRA--IYRSCSLMPCP 361
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain,
TSP-1 type 1; 2.40A {Homo sapiens}
Length = 153
Score = 107 bits (268), Expect = 3e-27
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 118 TQTSPWADGTPCYGA---THWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIK 174
SP +G PC G T C++ +C P +GGWGPW + CS CGGG++
Sbjct: 39 NSPSPQMNGKPCEGEARETKACKKDAC---------PINGGWGPWSPWDICSVTCGGGVQ 89
Query: 175 KSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNG 224
K R C++P P GGK CVG + CN +DC +R K N
Sbjct: 90 KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKENV 139
Score = 48.6 bits (116), Expect = 7e-07
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP------QWSVDKW 469
CS +CG GV TR +C + +++ C E + C CP WS W
Sbjct: 22 SCSVTCGDGVITRIRLC-NSPSPQMNGKPCEG-EARETKACKKDACPINGGWGPWS--PW 77
Query: 470 SACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEW 519
CSV+CG G ++R C C D +IC CP
Sbjct: 78 DICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVT--ENQICNKQDCPLE 125
Score = 36.6 bits (85), Expect = 0.007
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 456 CGTSKCPQ------WSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKE 509
Q WS WS+CSV+CG G R C + ++ C + +
Sbjct: 3 MDPEFELQDGGWSHWS--PWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKA- 59
Query: 510 ICYMAPCP 517
C CP
Sbjct: 60 -CKKDACP 66
Score = 34.3 bits (79), Expect = 0.048
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCPQWSVD---KWSAC 472
CS +CG GV+ RS +C ++ + C ++C CP ++ A
Sbjct: 79 ICSVTCGGGVQKRSRLC-NNPTPQFGGKDCVGDVTE-NQICNKQDCPLEPYTYRVRFLAK 136
Query: 473 SVSCGKGERRREIWCQ 488
E + Q
Sbjct: 137 ENVTQDAEDNTVSFLQ 152
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A
{Homo sapiens} SCOP: g.60.1.1 g.60.1.1
Length = 113
Score = 87.9 bits (218), Expect = 4e-21
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 118 TQTSPWADGTPCYGA---THWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIK 174
SP +G PC G T C++ +C P +GGWGPW + CS CGGG++
Sbjct: 30 NSPSPQMNGKPCEGEARETKACKKDAC---------PINGGWGPWSPWDICSVTCGGGVQ 80
Query: 175 KSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
K R C++P P GGK CVG + CN +DC
Sbjct: 81 KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 113
Score = 70.6 bits (173), Expect = 6e-15
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCA 208
+DGGW W + SCS CG G+ R C+SP+P GK C G+ ++C C
Sbjct: 1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACP 57
Score = 45.2 bits (107), Expect = 5e-06
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP------QWSVDKW 469
CS +CG GV TR +C + +++ C E + C CP WS W
Sbjct: 13 SCSVTCGDGVITRIRLC-NSPSPQMNGKPCEG-EARETKACKKDACPINGGWGPWS--PW 68
Query: 470 SACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516
CSV+CG G ++R C C D +IC C
Sbjct: 69 DICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVT--ENQICNKQDC 113
Score = 32.8 bits (75), Expect = 0.073
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 463 QWSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
WS WS+CSV+CG G R C + ++ C + + C CP
Sbjct: 7 HWS--PWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKA--CKKDACP 57
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 81.2 bits (200), Expect = 7e-17
Identities = 40/170 (23%), Positives = 54/170 (31%), Gaps = 49/170 (28%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSEC----------SAHCGPGTR-SVSL 49
M+ + + WS CS ++T+FL+ C PG
Sbjct: 179 MAPVMAHVDPEEPWSPCSARFITDFLDN---GYGHCLLDKPEAPLHLPVTFPGKDYDADR 235
Query: 50 QCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSD 109
QC F S+ C LP P C LWC+
Sbjct: 236 QCQLTFGPDSRH--------CPQLP------------------------PPCAALWCSGH 263
Query: 110 EGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPW 159
C T+ SPWADGTPC G C G C+ D L+ + +
Sbjct: 264 LNGHAMCQTKHSPWADGTPC-GPAQACMGGRCLHMD--QLQDFNIPQADY 310
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 78.7 bits (194), Expect = 4e-16
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 47/155 (30%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLEWQVISQSEC----------SAHCGPGTR-SVSL 49
M+ L N + WS CS + +T FL+ EC PGT +
Sbjct: 178 MASMLSNLDHSQPWSPCSAYMITSFLDN---GHGECLMDKPQNPIQLPGDLPGTSYDANR 234
Query: 50 QCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSD 109
QC F S+ P A+ C LWCT
Sbjct: 235 QCQFTFGEDSKHC----------------------PDAAS----------TCSTLWCTGT 262
Query: 110 EGEREGCHTQTSPWADGTPCYGATHWCQRGSCVAR 144
G C T+ PWADGT C G WC G CV +
Sbjct: 263 SGGVLVCQTKHFPWADGTSC-GEGKWCINGKCVNK 296
Score = 30.2 bits (68), Expect = 2.0
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 246 DNACK-LYCRVAQSSAYY--LLKDKVIDGTPCGPDTFDVCINGKCMK 289
+ C L+C DGT CG CINGKC+
Sbjct: 251 ASTCSTLWCTGTSGGVLVCQTKHFPWADGTSCGEG--KWCINGKCVN 295
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 79.6 bits (195), Expect = 9e-16
Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 10/140 (7%)
Query: 69 TCADLPRPAEREPCEGPCNAARWKFSPWGTPV------CQHLWCTSDEGEREGCHTQTSP 122
+ P + E P + C P
Sbjct: 419 SLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLMEFNACRCGPCFNNGVP 478
Query: 123 WADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRECSS 182
+GT C G+ + + DG W W S C GI++ REC +
Sbjct: 479 ILEGTSCRCQCRLGSLGAACEQTQTEGAKADGSWSCW----SSWSVCRAGIQERRRECDN 534
Query: 183 PAPANGGKYCVGKRVRYRSC 202
PAP NGG C G++V+ ++C
Sbjct: 535 PAPQNGGASCPGRKVQTQAC 554
Score = 38.0 bits (87), Expect = 0.010
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 146 TSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNT- 204
++ W + C PC K +R P GG C G SC++
Sbjct: 1 AATPAAVTCQLSNWSEWTDCF-PCQDK-KYRHRSLLQPNK-FGGTICSGDIWDQASCSSS 57
Query: 205 RDCAPGTMDFREEQC 219
C ++ QC
Sbjct: 58 TTCVRQAQCGQDFQC 72
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 77.2 bits (189), Expect = 5e-15
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 101 CQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQ 160
+ C P G+ C +G P DG W W
Sbjct: 439 LEEFQKEVSSCHCAPCQGNGVPVLKGSRCDCICPVGSQGLACEVSYRKNTPIDGKWNCWS 498
Query: 161 SFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCN 203
++ SCS G K R+C++P P NGG C G C+
Sbjct: 499 NWSSCS----GRRKTRQRQCNNPPPQNGGSPCSGPASETLDCS 537
Score = 45.3 bits (106), Expect = 6e-05
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPA-NGGKYCVGKRVRYRSCNTRDCAP 209
P D W S+ +C PC K YR P+ G+ C C T
Sbjct: 8 PIDCELSSWSSWTTCD-PCQK---KRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCR 63
Query: 210 GTMDFREEQC 219
+ C
Sbjct: 64 SQVRCEGFVC 73
>1w0r_A Properdin, factor P; X-RAY scattering, analytical
ultracentrifugation, complement, thrombospondin type I
repeats, constrained modelling; NMR {Homo sapiens} PDB:
1w0s_A
Length = 442
Score = 70.4 bits (172), Expect = 6e-13
Identities = 43/178 (24%), Positives = 53/178 (29%), Gaps = 12/178 (6%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCE-GPCNAARWK 92
CS C GTR+ C P P C + E E C+
Sbjct: 119 EPCSVTCSKGTRTRRRACNH--------PAPKCGGHCP--GQAQESEACDTQQVCPTHGA 168
Query: 93 FSPWGT-PVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRP 151
++ WG C +E + S G P
Sbjct: 169 WATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCP 228
Query: 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209
GGWGPW C CG G R C+ P P +GG +C G R CNT P
Sbjct: 229 VAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCP 286
Score = 60.0 bits (145), Expect = 1e-09
Identities = 32/176 (18%), Positives = 48/176 (27%), Gaps = 10/176 (5%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARW-K 92
S C CG G C P P PC W +
Sbjct: 240 SPCPVTCGLGQTMEQRTCNHPVPQHGGPFCA---GDATRTHICNTAVPCPVDGEWDSWGE 296
Query: 93 FSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPR 152
+SP + + C G++ T DG C G + + P
Sbjct: 297 WSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHC-----PL 351
Query: 153 DGGWGPWQSFGSCSRPCG-GGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
G W W ++G C PCG + R C+ P + + ++
Sbjct: 352 KGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGR 407
Score = 59.6 bits (144), Expect = 2e-09
Identities = 37/230 (16%), Positives = 52/230 (22%), Gaps = 37/230 (16%)
Query: 416 ECSKSCGTGVETRSAVCI-----DDYGREVDESQCSAAEKIIQRVCGTSKCPQ----WSV 466
CS SC G + ++ C +R G CP
Sbjct: 177 PCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPW 236
Query: 467 DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP---EWIT-- 521
S C V+CG G+ + C +CA D PCP EW +
Sbjct: 237 GPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTH-ICNTAVPCPVDGEWDSWG 295
Query: 522 --GQFSAEVGKNPDQKMGKGTAIRDVRCNLGDDSLCASIPRPPSVESCV----------- 568
K+ + G R C + + C
Sbjct: 296 EWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSW 355
Query: 569 --------CSVTCGEG-TATRDVRCNLGDDSLCASIPRPPSVETCVVHPC 609
C CG T R C ++ V
Sbjct: 356 SEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFW 405
Score = 58.5 bits (141), Expect = 3e-09
Identities = 33/196 (16%), Positives = 46/196 (23%), Gaps = 50/196 (25%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCPQWSV-DKWSACSV 474
+C G GV + + C + P+WS+ W+ CSV
Sbjct: 15 KCKGLLGGGVSVEDCCLNTAFAYQKRSGGL----------CQPCRSPRWSLWSTWAPCSV 64
Query: 475 SCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEWITGQFSAEVGKNPDQ 534
+C +G + R C N + CPE
Sbjct: 65 TCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEM--------------- 109
Query: 535 KMGKGTAIRDVRCNLGDDSLCASIPRPPSVESCVCSVTCGEGTATRDVRCNLGDDSL-CA 593
CSVTC +GT TR CN
Sbjct: 110 ------------GGWSGWGPWEP-----------CSVTCSKGTRTRRRACNHPAPKCGGH 146
Query: 594 SIPRPPSVETCVVHPC 609
+ E C
Sbjct: 147 CPGQAQESEACDTQQV 162
Score = 55.0 bits (132), Expect = 4e-08
Identities = 32/180 (17%), Positives = 48/180 (26%), Gaps = 29/180 (16%)
Query: 32 SQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARW 91
S +C G G A + C+ +
Sbjct: 12 SSGKCKGLLGGGVSVEDCCL-----------------NTAFAYQKRSGGLCQPCRSPRWS 54
Query: 92 KFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLR- 150
+S W C+ E G + + +
Sbjct: 55 LWSTWAP-------CSVTCSE--GSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQC 105
Query: 151 -PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209
P GGW W + CS C G + R C+ PAP GG C G+ +C+T+ P
Sbjct: 106 CPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGH-CPGQAQESEACDTQQVCP 164
Score = 48.1 bits (114), Expect = 6e-06
Identities = 35/188 (18%), Positives = 49/188 (26%), Gaps = 25/188 (13%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPC--NAARW 91
+ CSA C G ++ +P Q C L R PC
Sbjct: 176 TPCSASCHGGPHEPKETR-SRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWG 234
Query: 92 KFSPWGTPVCQHLWCTSDEG----EREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTS 147
+ P C G + P G C G +T+
Sbjct: 235 PWGPVSP-------CPVTCGLGQTMEQRTCNHPVPQHGGPFCAG-----DATRTHICNTA 282
Query: 148 SLRPRDGGWGPWQSFGSC------SRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRS 201
P DG W W + C S C + R + G C G++ R
Sbjct: 283 VPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRH 342
Query: 202 CNTRDCAP 209
C + P
Sbjct: 343 CYSIQHCP 350
Score = 43.9 bits (103), Expect = 1e-04
Identities = 27/195 (13%), Positives = 43/195 (22%), Gaps = 36/195 (18%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP---------QWSV 466
C +CG G C + C+ CP +WS
Sbjct: 241 PCPVTCGLGQTMEQRTCNHP-VPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSP 299
Query: 467 -DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEWIT---- 521
+ + S+SC + ++ CA R + CP +
Sbjct: 300 CIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHC-YSIQHCPLKGSWSEW 358
Query: 522 ---GQFSAEVGKNPDQKMGKGTAIRDVRCNLGDDSLCASIPRPPSVESCV---------- 568
G G N T R C ++
Sbjct: 359 STWGLCMPPCGPN-------PTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPR 411
Query: 569 CSVTCGEGTATRDVR 583
C G+ + R
Sbjct: 412 CEELQGQKLVVEEKR 426
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Length = 56
Score = 62.8 bits (153), Expect = 6e-13
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
PW + CS CG G++ R S A C + C +C
Sbjct: 2 SIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELGD---CNEDLEQAEKCMLPEC 55
Score = 35.4 bits (82), Expect = 0.003
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 463 QWSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
WS +WS CSV+CGKG R R+ + C +D + E C + CP
Sbjct: 9 PWS--EWSDCSVTCGKGMRTRQRML---KSLAELGDCNEDLE--QAEKCMLPECP 56
Score = 27.3 bits (61), Expect = 2.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 569 CSVTCGEGTATRDVRC-NLGDDSLCASIPRPPSVETCVVHPC 609
CSVTCG+G TR +L + C E C++ C
Sbjct: 16 CSVTCGKGMRTRQRMLKSLAELGDCNEDLE--QAEKCMLPEC 55
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCP 462
+CS +CG G+ TR + + C+ + C +CP
Sbjct: 15 DCSVTCGKGMRTRQRMLK----SLAELGDCN-EDLEQAEKCMLPECP 56
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 67.3 bits (164), Expect = 4e-12
Identities = 47/290 (16%), Positives = 73/290 (25%), Gaps = 89/290 (30%)
Query: 11 PWSWSNCSRHYLTEFLEWQVISQSEC------------SAHCGPGTRSVSLQCVQHFPAS 58
+ +S+CS E+L + +C CG V +C P +
Sbjct: 177 AFQFSSCSIREYREYLLRD---RPQCILNKPLSTDIVSPPICGNYFVEVGEECDCGSPQA 233
Query: 59 SQPPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHT 118
Q + ATC E + C+ Q C +D
Sbjct: 234 CQSA-CCNAATCQFKGAETECRVAKDDCDLPEL-------CTGQSAECPTD--------- 276
Query: 119 QTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYR 178
S +G PC +C G+C C G S +
Sbjct: 277 --SLQRNGHPCQNNQSYCYNGTCPTLTN-----------------QCITLLGPHFTVSPK 317
Query: 179 ECSSP-APANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPGLSRNVK 237
C + + G +C + C +D G + C + N + +P
Sbjct: 318 GCFNLNMRGDDGSFCRMEDGTKIPCAAKDVKCGRL-----YCTEKNTMSCLIP------- 365
Query: 238 WTPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGKC 287
GT CG VC G+C
Sbjct: 366 -----------------------PNPDGIMAEPGTKCGDGM--VCSKGQC 390
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 59.3 bits (143), Expect = 2e-09
Identities = 55/310 (17%), Positives = 88/310 (28%), Gaps = 78/310 (25%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFL---------EWQVISQSECSAHCGPGTRSVSLQC 51
M+ AL + +S+CS+ EFL + + + A CG V +C
Sbjct: 176 MAGALSCEA-SFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEEC 234
Query: 52 VQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEG 111
P + + P TC + + C + +F GT C + +
Sbjct: 235 DCGSPRTCRDP-CCDATTC----KLRQGAQCAEGLCCDQCRFKGAGTE------CRAAKD 283
Query: 112 E---REGCHTQTSPW-----ADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFG 163
E + C +++ +G PC +C G C
Sbjct: 284 ECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMAD----------------- 326
Query: 164 SCSRPCGGGIKKSYREC-SSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKF 222
C G G S C N YC ++ +C +D G + C
Sbjct: 327 QCIALFGPGATVSQDACFQFNREGNHYGYCRKEQNTKIACEPQDVKCGRL-----YCFPN 381
Query: 223 NGNNFSVPGLSRNVKWTPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVC 282
+ N N C +Y V+ GT C C
Sbjct: 382 SPEN-------------------KNPCNIYYSPNDEDKGM-----VLPGTKCADR--KAC 415
Query: 283 INGKCMKAGC 292
NG+C+
Sbjct: 416 SNGQCVDVTT 425
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 59.0 bits (142), Expect = 3e-09
Identities = 65/335 (19%), Positives = 89/335 (26%), Gaps = 67/335 (20%)
Query: 8 YTYPWSWSNCSRHYLTEFLEWQVISQSEC-------SAHCGPGTRSVSLQCVQHFPASSQ 60
Y P ++ C+ +FL + CG G +C PA
Sbjct: 176 YYLPKKFTQCNIEEYHDFLNSGGGACLFNKPSKLLDPPECGNGFIETGEECDCGTPAECV 235
Query: 61 PPQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQT 120
C + C + KF P GT VC+ D E +
Sbjct: 236 LEGAECCKKC----TLTQDSQCSDGLCCKKCKFQPMGT-VCREAVNDCDIRET---CSGN 287
Query: 121 SPW-------ADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGI 173
S DG C G C G C RD C G +
Sbjct: 288 SSQCAPNIHKMDGYSCDGVQGICFGGRCKTRDR-----------------QCKYIWGQKV 330
Query: 174 KKSYRECSSPAPANGGK--YCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPG 231
S + C G + C + + CN RD G + C ++P
Sbjct: 331 TASDKYCYEKLNIEGTEKGNCGKDKDTWIQCNKRDVLCGYL-----LCTNIG----NIPR 381
Query: 232 LSRNVKWTPKYLGGDNACKLYCRVAQSSAYYLLKDK-----VIDGTPCGPDTFDVCINGK 286
L L L C + L++ V DGTPCGP C+ +
Sbjct: 382 LGELDGEITSTLVVQQGRTLNCS----GGHVKLEEDVDLGYVEDGTPCGPQMM--CLEHR 435
Query: 287 C-----MKAGCNHVLDSDSKLDFCGVCEGNNQTCQ 316
C + GVC N C
Sbjct: 436 CLPVASFNFSTCLSSKEGTICSGNGVC-SNELKCV 469
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 53.3 bits (127), Expect = 2e-07
Identities = 45/248 (18%), Positives = 68/248 (27%), Gaps = 22/248 (8%)
Query: 83 EGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCV 142
PC + + P GT C G
Sbjct: 475 NIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGR---PTLSGTECLCVCQSGTYGENC 531
Query: 143 ARDTSSLR--PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYR 200
+ + + DG WG W S+ +C + REC++PAP GGK C G++ +
Sbjct: 532 EKQSPDYKSNAVDGQWGCWSSWSTCDATYK---RSRTRECNNPAPQRGGKRCEGEKRQEE 588
Query: 201 SCNTRDCAPGT-----------MDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGGDNAC 249
C E P YL G++
Sbjct: 589 DCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGED-V 647
Query: 250 KLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGKCMKAGCNHVLDSDSKLDFCGVCE 309
++ C + Y + DGT D C +C+K VL + E
Sbjct: 648 EISCLTGFETVGYQYFRCLPDGTWRQGD--VECQRTECIKPVVQEVLTITPFQRLYRIGE 705
Query: 310 GNNQTCQE 317
TC +
Sbjct: 706 SIELTCPK 713
Score = 46.4 bits (109), Expect = 3e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 156 WGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYC--VGKRVRYRSCNTRDCAPGTM 212
W + SCS+ C G + +R+ +C + + R CN + C +
Sbjct: 5 HYAWTQWTSCSKTCNSGTQSRHRQIVVD-KYYQENFCEQICSKQETRECNWQRCPINCL 62
Score = 44.1 bits (103), Expect = 1e-04
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 4/109 (3%)
Query: 94 SPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRD 153
+ W P+ L C D + H Q G+ C + L D
Sbjct: 728 NSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHS----EDLCVFD 783
Query: 154 GGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSC 202
+ + +C + G+ R R
Sbjct: 784 TDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLS 832
Score = 43.3 bits (101), Expect = 3e-04
Identities = 34/166 (20%), Positives = 49/166 (29%), Gaps = 23/166 (13%)
Query: 416 ECSKSCGTGVETRSAVCIDD--YGREVDESQCSAAEKIIQRVCGTSKCP------QWSVD 467
CSK+C +G ++R + D Y E CS E R C +CP +
Sbjct: 13 SCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQE---TRECNWQRCPINCLLGDFG-- 67
Query: 468 KWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEWITGQFSAE 527
WS C K + R + P+ A + C
Sbjct: 68 PWSDCDPCIEKQSKVRSVLRPSQ----FGGQPCTAPLVAFQPCIPSKLCKIEEAD----- 118
Query: 528 VGKNPDQKMGKGTAIRDVRCNLGDDSLCASIPRPPSVESCVCSVTC 573
KN + R + CN +D S R VC+
Sbjct: 119 -CKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKY 163
Score = 37.9 bits (87), Expect = 0.011
Identities = 6/53 (11%), Positives = 9/53 (16%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCN 203
W S S C + G C+ +
Sbjct: 722 RYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSH 774
Score = 36.4 bits (83), Expect = 0.036
Identities = 20/185 (10%), Positives = 37/185 (20%), Gaps = 16/185 (8%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKF 93
S C T + Q S + + C ++ +
Sbjct: 734 ISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEE--DCSHHSEDLCVFDTDSNDY-- 789
Query: 94 SPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRD 153
C + Q + C ++S +
Sbjct: 790 FTSPACKFLAEKCL---------NNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKES 840
Query: 154 GGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMD 213
G+ + CS + +C YCV C GT+
Sbjct: 841 CGYDTCYDWEKCSASTSKCVCLLPPQCFKGGN---QLYCVKMGSSTSEKTLNICEVGTIR 897
Query: 214 FREEQ 218
+
Sbjct: 898 CANRK 902
Score = 33.3 bits (75), Expect = 0.28
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 461 CPQWSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCP 517
C ++ +W++CS +C G + R D + +++C C CP
Sbjct: 3 CDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKY-YQENFCEQICSKQETRECNWQRCP 58
Score = 32.5 bits (73), Expect = 0.58
Identities = 30/220 (13%), Positives = 45/220 (20%), Gaps = 33/220 (15%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKF 93
+ CS C GT+S Q V + C + E C
Sbjct: 12 TSCSKTCNSGTQSRHRQIVV--------DKYYQENFCEQICSKQETRECNWQRCPINCLL 63
Query: 94 SPWGTPVCQHLW--CTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRP 151
+G W C Q+ + P C + +
Sbjct: 64 GDFGP------WSDCDP------CIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKL 111
Query: 152 -RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPG 210
+ F S C + NG C T+
Sbjct: 112 CKIEEADCKNKFRCDSGRC----------IARKLECNGENDCGDNSDERDCGRTKAVCTR 161
Query: 211 TMDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGGDNACK 250
+ + NG +F V G K
Sbjct: 162 KYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVK 201
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 52.0 bits (124), Expect = 3e-07
Identities = 43/297 (14%), Positives = 72/297 (24%), Gaps = 64/297 (21%)
Query: 8 YTYPWSWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHN 67
+SNCS +F+ + + +C+ + P +
Sbjct: 173 PEPSTFFSNCSYFECWDFI------------------MNHNPECILNEP---LGTDIISP 211
Query: 68 ATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGT 127
C + E C+ + CQ+ C T G+
Sbjct: 212 PVCGNELLEVGEE-----CDCGTPEN-------CQNEC----------CDAATCKLKSGS 249
Query: 128 PCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGIKKSYRE--CSSPAP 185
C C++ T R P + S C + + +
Sbjct: 250 QCG-HGDCCEQCKFSKSGTEC-RASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGY 307
Query: 186 ANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPGLSRNVKWTPKYLGG 245
G + Y F Q + G N P
Sbjct: 308 CYNGNCPIMYHQCYDLFGADVYEAEDSCFERNQKGNYYGYCR-----KENGNKIPCAPED 362
Query: 246 DNACKLYC------RVAQSSAYYLLKDK----VIDGTPCGPDTFDVCINGKCMKAGC 292
+LYC + +Y +D+ V+ GT C VC NG C+
Sbjct: 363 VKCGRLYCKDNSPGQNNPCKMFYSNEDEHKGMVLPGTKCADG--KVCSNGHCVDVAT 417
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 43.2 bits (102), Expect = 1e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
MS L + WS C+ +TEFL+
Sbjct: 176 MSSILTSIDASKPWSKCTSATITEFLD 202
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 41.9 bits (98), Expect = 5e-04
Identities = 52/301 (17%), Positives = 73/301 (24%), Gaps = 77/301 (25%)
Query: 11 PWSWSNCSRHYLTEFLEWQVIS---------QSECSAHCGPGTRSVSLQCVQHFPASSQP 61
+SNCS H +L CG +C PA+ Q
Sbjct: 178 SKLFSNCSIHDYQRYLTRYKPKCIFNPPLRKDIVSPPVCGNEIWEEGEECDCGSPANCQN 237
Query: 62 PQPLHNATCADLPRPAEREPCEGPCNAARWKFSPWGTPVCQHL--------WCTSDEGER 113
P ATC + C + K GT VC+ CT G+
Sbjct: 238 P-CCDAATC----KLKPGAECGNGLCCYQCKIKTAGT-VCRRARDECDVPEHCT---GQS 288
Query: 114 EGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGSCSRPCGGGI 173
C + +G PC +C G C C G
Sbjct: 289 AEC-PRDQLQQNGKPCQNNRGYCYNGDCPIMRNQ-----------------CISLFGSRA 330
Query: 174 KKSYRECSSP-APANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPGL 232
+ C + YC + R C +D G + C+ + P
Sbjct: 331 NVAKDSCFQENLKGSYYGYCRKENGRKIPCAPQDVKCGRL-----FCLN------NSPRN 379
Query: 233 SRNVKWTPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGK-CMKAG 291
+ K V GT C VC N + C+
Sbjct: 380 KNPCNMHYSCMDQH------------------KGMVDPGTKCEDGK--VCNNKRQCVDVN 419
Query: 292 C 292
Sbjct: 420 T 420
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ ++ + ++P +S+CS+ YL FLE
Sbjct: 169 MAGSIGS-SFPRMFSDCSQAYLESFLE 194
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated
three-stranded structure, cell adhesion; NMR {Plasmodium
falciparum}
Length = 49
Score = 34.6 bits (79), Expect = 0.006
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 154 GGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAP 209
G W + CS CG G + RE C + C C P
Sbjct: 3 ASCGVWDEWSPCSVTCGKGTRSRKREILHEG-------CTSEIQ--EQCEEERCPP 49
Score = 33.8 bits (77), Expect = 0.010
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 457 GTSKCPQWSVDKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516
G++ C W +WS CSV+CGKG R R+ + C + E C C
Sbjct: 1 GSASCGVWD--EWSPCSVTCGKGTRSRKREILHEG-------CTSEIQ----EQCEEERC 47
Query: 517 P 517
P
Sbjct: 48 P 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.006
Identities = 54/279 (19%), Positives = 85/279 (30%), Gaps = 110/279 (39%)
Query: 136 CQRGSCVARDTSSLRPR------DGGWG---PWQSFGSCSRPCGGGIKKSYRECSSPAPA 186
C A +SL P + G P S + ++ ++ + +S PA
Sbjct: 310 CYE----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ---VQDYVNKTNSHLPA 362
Query: 187 ---------NGGKYCV---------GKRVRYRSCNTRDCAPGTMD-----FREEQCVKFN 223
NG K V G + R + AP +D F E + +KF
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR----KAKAPSGLDQSRIPFSERK-LKF- 416
Query: 224 GNNF---SVP----------------GLSRNVKWTPKYLG--------GDNACKLYCRVA 256
N F + P + NV + K + G + L ++
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 257 QSSAYYLLKDKVIDGTPCGPDTFDVCIN-GKCMKAGCNHVLDSDSKLDF-CGVCEG-NNQ 313
+ + D +I P + + H+ LDF G G
Sbjct: 477 ER-----IVDCII----RLP------VKWETTTQFKATHI------LDFGPGGASGLGVL 515
Query: 314 TCQEIRGSHNTSQYGYTRVLRIPAGSSNLDIT---QYGY 349
T + G+ G RV I AG+ LDI YG+
Sbjct: 516 THRNKDGT------G-VRV--IVAGT--LDINPDDDYGF 543
Score = 29.6 bits (66), Expect = 4.2
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 25/72 (34%)
Query: 12 W-SWSNCSRHYLTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATC 70
W S+ R + L + G R C + +P +S PP L
Sbjct: 289 WESFFVSVRKAI-TVLFFI-------------GVR-----CYEAYPNTSLPPSIL----- 324
Query: 71 ADLPRPAEREPC 82
D E P
Sbjct: 325 EDSLENNEGVPS 336
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 36.9 bits (86), Expect = 0.009
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
MS + + +S+CS+ Y FL
Sbjct: 167 MSAVISD-KQSKLFSDCSKDYYQTFLT 192
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 36.9 bits (86), Expect = 0.010
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ L + + +S+CS++ +L
Sbjct: 166 MASVL-SKVLSYEFSDCSQNQYETYLT 191
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 36.2 bits (84), Expect = 0.016
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ A + +P +S CSR L F
Sbjct: 170 MAAATGH-PFPRVFSACSRRQLRAFFR 195
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 36.2 bits (84), Expect = 0.017
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M L + +S+ S HY FL+
Sbjct: 166 MRPGLTKGR-SYEFSDDSMHYYERFLK 191
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 35.8 bits (83), Expect = 0.023
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ L + S+S+CS+H FL
Sbjct: 163 MAPVLSSGP-AKSFSDCSKHDYQSFLT 188
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A
{Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Length = 77
Score = 33.3 bits (75), Expect = 0.028
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 391 IDYTGTDAVVER-INCSRPLTKELIVECSKSCGTGVETRSAVCIDDYGREVDESQCSAAE 449
+++ +D ++ +N + CS +CG G++ R + ++ + A
Sbjct: 2 VEFEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKD----ELDYAN 57
Query: 450 KIIQRVCGTSKCPQ 463
I +++C KCP
Sbjct: 58 DIEKKICKMEKCPH 71
Score = 32.9 bits (74), Expect = 0.034
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 467 DKWSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPE 518
+WS CSV+CG G + R N + A+D K+IC M CP
Sbjct: 24 TEWSPCSVTCGNGIQVRIKPGS-ANKPKDELDYAND---IEKKICKMEKCPH 71
Score = 29.8 bits (66), Expect = 0.56
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 159 WQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
+ CS CG GI+ + S+ P + + + + C C
Sbjct: 23 STEWSPCSVTCGNGIQVRIKPGSANKPKD--ELDYANDIEKKICKMEKC 69
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 35.0 bits (81), Expect = 0.038
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ +L + +SNCS +FL
Sbjct: 164 MAPSL-SSDPTKVFSNCSLILYEDFLS 189
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 34.6 bits (80), Expect = 0.049
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
MS ++ + T +S+CS +++
Sbjct: 163 MSPSISDET-IKYFSDCSYIQCRDYIS 188
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 34.2 bits (78), Expect = 0.12
Identities = 51/296 (17%), Positives = 69/296 (23%), Gaps = 81/296 (27%)
Query: 11 PWSWSNCSRHYLTEFLEW---------QVISQSECSAHCGPGTRSVSLQCVQHFPASSQP 61
+ +S+CS +L + + CG V +C PA Q
Sbjct: 182 AYQFSSCSVREHQRYLLRDRPQCILNKPLSTDIVSPPICGNYFVEVGEECDCGSPADCQS 241
Query: 62 PQPLHNATCADLPRPA-EREPCEGPCNAARWKFSPWGTPVCQHL-------WCTSDEGER 113
+ TC + E C C KF CT G+
Sbjct: 242 A-CCNATTCKLQHEAQCDSEECCEKC-----KFKGARAECRAAKDDCDLPELCT---GQS 292
Query: 114 EGCHTQTSPWADGTPCYGATHWCQRGSCVARDT--SSLRPRDGGWGPWQSFGSCSRPCGG 171
C T +G PC +C G C +LR F R G
Sbjct: 293 AECPTDV-FQRNGLPCQNNQGYCYNGKCPIMTNQCIALRGPGVKVSRDSCFTLNQRTRGC 351
Query: 172 GIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFSVPG 231
G C + R C +D G + C N+
Sbjct: 352 G------------------LCRMEYGRKIPCAAKDVKCGRL-----FCK--RRNSMICNC 386
Query: 232 LSRNVKWTPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTPCGPDTFDVCINGKC 287
V GT CG VC N +C
Sbjct: 387 SISPRDPNYGM-------------------------VEPGTKCGDGM--VCSNRQC 415
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 33.6 bits (76), Expect = 0.14
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MSRAL--DNYTYPWSWSNCSRHYLTEFLE 27
M ++ +S CS+ + + +E
Sbjct: 218 MYPIAVSGDHENNKMFSQCSKQSIYKTIE 246
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 30.9 bits (69), Expect = 0.85
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 282 CINGKCMKAGCNHVLDSDSK-LDFCGVC 308
C N C+ ++ + D K FCG C
Sbjct: 160 CDNPGCIMYCPRNLDELDRKRKYFCGKC 187
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 30.1 bits (67), Expect = 1.5
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 282 CINGKCMKAGCNHVLDSDSK-LDFCGVC 308
C + C+ + + +L+ D K +FC C
Sbjct: 156 CPDRNCVMSFSSSLLEVDRKSPNFCRRC 183
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 30.0 bits (68), Expect = 2.4
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 570 SVTCGEGTATRDVRCNLGDDSLCASIPRPPSVETCVVHPC-DDDTLDHYNDI 620
V GE D C P +E + HP D + D Y+DI
Sbjct: 83 KVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDI 134
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA
repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Length = 225
Score = 28.5 bits (64), Expect = 5.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 88 AARWKFSPWGTPVCQHLWCTSDEGEREG 115
ARW +P+ + ++LW S + G
Sbjct: 197 TARW--APYRSLASRYLWANSARMQAGG 222
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 28.6 bits (63), Expect = 6.5
Identities = 10/107 (9%), Positives = 19/107 (17%), Gaps = 1/107 (0%)
Query: 169 CGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPGTMDFREEQCVKFNGNNFS 228
C + + G C + + + +
Sbjct: 8 CANNRHQC-SVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQ 66
Query: 229 VPGLSRNVKWTPKYLGGDNACKLYCRVAQSSAYYLLKDKVIDGTPCG 275
VP + N + + Y L G G
Sbjct: 67 VPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIG 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.463
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,503,986
Number of extensions: 636042
Number of successful extensions: 1483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 154
Length of query: 656
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 556
Effective length of database: 3,909,693
Effective search space: 2173789308
Effective search space used: 2173789308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)