RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14790
(656 letters)
>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 59
Score = 70.4 bits (172), Expect = 5e-16
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDC 207
P +GGWGPW + CS CGGG++K R C++P P GGK CVG + CN +DC
Sbjct: 3 PINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 59
Score = 28.8 bits (64), Expect = 0.29
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 469 WSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPC 516
W CSV+CG G ++R C C D +IC C
Sbjct: 14 WDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVT--ENQICNKQDC 59
>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 69.6 bits (170), Expect = 8e-16
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 152 RDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNT 204
+DGGW W + SCS CG G+ R C+SP+P GK C G+ ++C
Sbjct: 1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKK 53
Score = 26.1 bits (57), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 463 QWSVDKWSACSVSCGKGERRREIWC 487
WS WS+CSV+CG G R C
Sbjct: 7 HWS--PWSSCSVTCGDGVITRIRLC 29
>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I)
{Hen (Gallus gallus) [TaxId: 9031]}
Length = 163
Score = 38.3 bits (88), Expect = 7e-04
Identities = 8/60 (13%), Positives = 11/60 (18%)
Query: 151 PRDGGWGPWQSFGSCSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPG 210
P G WG W C G + + + G
Sbjct: 12 PNGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWG 71
Score = 30.6 bits (68), Expect = 0.35
Identities = 17/106 (16%), Positives = 21/106 (19%), Gaps = 10/106 (9%)
Query: 105 WCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRDGGWGPWQSFGS 164
G G + P G D S + G WG W SF
Sbjct: 23 RQFCHSGYANGFALKVEPSQFGRDDTA----LNGIRLRCLDGSVIESLVGKWGTWTSFLV 78
Query: 165 CSRPCGGGIKKSYRECSSPAPANGGKYCVGKRVRYRSCNTRDCAPG 210
C + GG C+ G
Sbjct: 79 CPTGYLVSFSLRSEKS------QGGGDDTAANNIQFRCSDEAVLVG 118
Score = 27.6 bits (60), Expect = 3.6
Identities = 7/104 (6%), Positives = 13/104 (12%), Gaps = 2/104 (1%)
Query: 416 ECSKSCGTGVETRSAVCIDDYGREVDESQCSAAEKIIQRVCGTSKCPQWSVDKWSACSVS 475
C G + K W+ + C
Sbjct: 25 FCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWT--SFLVCPTG 82
Query: 476 CGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEW 519
R Q + + +
Sbjct: 83 YLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRF 126
Score = 27.2 bits (59), Expect = 4.1
Identities = 10/141 (7%), Positives = 23/141 (16%), Gaps = 23/141 (16%)
Query: 34 SECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREPCEGPCNAARWKF 93
C + G ++ + +
Sbjct: 24 QFCHSGYANGFALKVEPSQFGRDDTA----------LNGIRLRCLDGSVIESLVGKWGTW 73
Query: 94 SPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSCVARDTSSLRPRD 153
+ + + + C D + L
Sbjct: 74 TSFLVCPTGY-----------LVSFSLRSEKSQGGGDDTAANNIQFRC--SDEAVLVGDG 120
Query: 154 GGWGPWQSFGSCSRPCGGGIK 174
WG + + + CG K
Sbjct: 121 LSWGRFGPWSKRCKICGLQTK 141
Score = 26.8 bits (58), Expect = 6.4
Identities = 14/135 (10%), Positives = 24/135 (17%), Gaps = 15/135 (11%)
Query: 469 WSACSVSCGKGERRREIWCQRDNHVVHDSYCADDPVPARKEICYMAPCPEWIT----GQF 524
C G + Q D+ + + +W T
Sbjct: 23 RQFCHSGYANGFALKVEPSQFGR---DDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVC 79
Query: 525 SAEVGKNPDQKMGKGTAIRDVRCNLGDDSLCASIPRPPSVES--------CVCSVTCGEG 576
+ + K D C+ CG
Sbjct: 80 PTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQ 139
Query: 577 TATRDVRCNLGDDSL 591
T + D +L
Sbjct: 140 TKVESPQGLRDDTAL 154
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 35.9 bits (82), Expect = 0.008
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ A + +P +S CSR L F
Sbjct: 166 MAAATGH-PFPRVFSACSRRQLRAFFR 191
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
diamonback rattlesnake (Crotalus atrox), atrolysin C
[TaxId: 8730]}
Length = 200
Score = 34.4 bits (78), Expect = 0.027
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
+ R + +S+ S HY FL+
Sbjct: 163 IMRPGLTKGRSYEFSDDSMHYYERFLK 189
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 34.0 bits (77), Expect = 0.029
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 8 YTYPWSWSNCSRHYLTEFLE 27
+ +S+CS++ +L
Sbjct: 172 KVLSYEFSDCSQNQYETYLT 191
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 34.0 bits (77), Expect = 0.032
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
M+ L + S+S+CS+H FL
Sbjct: 163 MAPVL-SSGPAKSFSDCSKHDYQSFLT 188
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu
(Trimeresurus mucrosquamatus), atrolysin E [TaxId:
103944]}
Length = 201
Score = 32.5 bits (73), Expect = 0.091
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
MS + + +S+CS+ Y FL
Sbjct: 165 MSAVISD-KQSKLFSDCSKDYYQTFLT 190
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake
(Agkistrodon acutus), acutolysin A [TaxId: 36307]}
Length = 197
Score = 31.7 bits (71), Expect = 0.18
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 1 MSRALDNYTYPWSWSNCSRHYLTEFLE 27
MS ++ + T + +S+CS +++
Sbjct: 163 MSPSISDETIKY-FSDCSYIQCRDYIA 188
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 31.8 bits (71), Expect = 0.24
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MSRALDNYTYP--WSWSNCSRHYLTEFLE 27
M + + +S CS+ + + +E
Sbjct: 216 MYPIAVSGDHENNKMFSQCSKQSIYKTIE 244
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 28.7 bits (63), Expect = 1.7
Identities = 19/173 (10%), Positives = 38/173 (21%), Gaps = 35/173 (20%)
Query: 377 VSKSHKVIVFGGIAIDYTGTDAVVERINCSRPLTKELIVECSKSCGTGVETRSAVCIDDY 436
V K+ G AI G A+++ + + E + S + + D
Sbjct: 4 VKTCGKLYWAGEYAILEPGQLALIK------DIPIYMRAEIAFSDSYRIYSDMFDFAVDL 57
Query: 437 GREVDESQCSAAEKIIQRVCG-------------TSKCPQWSVDKWSACSVSC------- 476
D S ++ K + S S
Sbjct: 58 RPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKA 117
Query: 477 -----GKGERRREI--WCQRDNHVVHDSYCADDPVPARKE--ICYMAPCPEWI 520
+ + D+ D E + Y + + +
Sbjct: 118 LLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKV 170
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 28.1 bits (62), Expect = 4.1
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 307 VCEGNNQTCQEIRGSHNTSQYGYTRVLRIPAGSSNLDITQYGYGGTSSDDNYLALSDGET 366
V E C E S T Y RVL+ + +S + N +
Sbjct: 66 VSEDKKAKCAEKGKSKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGK 125
Query: 367 NE------PILNGKNVVSKSHKVIVFGGIAIDYTGTDAVVERINCSRPLTKE 412
NE P + S ++ G + ++ G++ ++ R + PL E
Sbjct: 126 NEDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTE 177
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 27.3 bits (59), Expect = 6.1
Identities = 17/142 (11%), Positives = 25/142 (17%), Gaps = 8/142 (5%)
Query: 22 LTEFLEWQVISQSECSAHCGPGTRSVSLQCVQHFPASSQPPQPLHNATCADLPRPAEREP 81
L ++ + + + A L + T L
Sbjct: 57 LEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERA 116
Query: 82 CEGPCNAARWKFSPWGTPVCQHLWCTSDEGEREGCHTQTSPWADGTPCYGATHWCQRGSC 141
AR S G Y + G
Sbjct: 117 SRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGL--------GGYAPGNAYLDGLA 168
Query: 142 VARDTSSLRPRDGGWGPWQSFG 163
R + L WG W G
Sbjct: 169 QQRRSDGLPATAVAWGTWAGSG 190
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
(gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 183
Score = 27.0 bits (59), Expect = 6.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 92 KFSPWGTPVCQHLWCTSDEGEREG 115
++ PW + H+W T E
Sbjct: 160 RWKPWRSYALLHIWYTEGWQPDEA 183
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 26.4 bits (58), Expect = 8.4
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 7/92 (7%)
Query: 562 PSVESCVCSVTCGEGTATRDVRCNLGDDSL---CASIPRPPSVETCVVHPCDDDTLDH-- 616
+V + V A R + PR +++ C P T+D
Sbjct: 45 RTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECV 104
Query: 617 -YNDIPGSRY-DMQDSPYYLWRHGHWTEQWNN 646
G R + P YL+ T +
Sbjct: 105 RCAQAFGQRLAEELGVPVYLYGEAARTAGRQS 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.463
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,738,970
Number of extensions: 141455
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 44
Length of query: 656
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 565
Effective length of database: 1,158,166
Effective search space: 654363790
Effective search space used: 654363790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)