BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14799
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L H T G+K ++C EC SF + L RH++ +P+ C C + F
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR---THTGEKPYKCPECGKSF 87
Query: 77 LNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRK 136
+++L H +THTGE+ C C +SF A L H + H + + C C K F R+
Sbjct: 88 SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSRE 146
Query: 137 SYLKVHLLT 145
L H T
Sbjct: 147 DNLHTHQRT 155
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
G+K + C EC SF L H++ +P+ C C + F +K L H +THTG
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR---THTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 92 ERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
E+ C C +SF +A+L H + H + + C C K F + ++L+ H T
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHL 82
L H T G+K ++C EC SF L H++ +P+ C C + F +HL
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR---THTGEKPYACPECGKSFSQLAHL 121
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
H +THTGE+ C C +SF + +L H + H + + C C K F R+ L VH
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVH 180
Query: 143 LLT 145
T
Sbjct: 181 QRT 183
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L AH T G+K + C EC SF L H++ +P+ C C + F
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR---THTGEKPYKCPECGKSF 143
Query: 77 LNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ +L H +THTGE+ C C +SF + L H +
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHL 82
L AH T G+K ++C EC SF L H++ +P+ C C + F + L
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR---THTGEKPYKCPECGKSFSRRDAL 177
Query: 83 AYHVKTHTGER 93
H +THTG++
Sbjct: 178 NVHQRTHTGKK 188
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 11 NKNYFFFLMGLKLEAHITTVHGDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFP 68
NK YF L+ H G+K +QCD +C+ F L RH++ ++PF
Sbjct: 15 NKRYFKLSH---LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR---RHTGVKPFQ 68
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTC--GLCFQSFYSKADLVRH 113
C C+++F HL H +THTGE+ +C C + F +LVRH
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLN 120
RPF C C +R+ SHL H + HTGE+ C C + F L RH + RH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63
Query: 121 IRSFTCHLCNKGFFRKSYLKVHLLT 145
++ F C C + F R +LK H T
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRT 88
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSF 124
+P+ C C + F S+L H +THTGE+ C C +SF +DL +H + H + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKPY 61
Query: 125 TCHLCNKGFFRKSYLKVHLLT 145
C C K F R +L H T
Sbjct: 62 KCPECGKSFSRSDHLSRHQRT 82
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 33 DKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+K ++C EC SF L +H++ +P+ C C + F S L H +THTGE
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR---THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 93 RDVTCGLCFQSFYSKADLVRHMK 115
+ C C +SF L RH +
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQR 81
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L+ H T G+K ++C EC SF L +H++ +P+ C C + F
Sbjct: 14 FSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR---THTGEKPYKCPECGKSF 70
Query: 77 LNKSHLAYHVKTHTGER 93
HL+ H +TH ++
Sbjct: 71 SRSDHLSRHQRTHQNKK 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
FL L+ H G+K F+C +C + + L H+ M+ S + F C +C++ F
Sbjct: 17 FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76
Query: 77 LNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHM 114
+ L H+ +HTGE C C Q F K DL HM
Sbjct: 77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRS---FT 125
C C ++FL+K +L H + HTGE+ C C + ++ K +L+ H + R+ RS FT
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVFT 68
Query: 126 CHLCNKGFFRKSYLKVHLLT 145
C +C + F R+ L++H+++
Sbjct: 69 CSVCQETFRRRMELRLHMVS 88
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVK---T 88
G +C C F + L H + KH +PF C C + + K +L H
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNR-KH--TGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHM 148
+ E+ TC +C ++F + +L HM H + C C++ F +K L+ H++ +H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 149 QPAD 152
P+
Sbjct: 120 GPSS 123
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF + S+L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
F C +C + F R K H IH++ D
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQKD 90
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSDSSNLTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF + L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
F C +C + F R K H IH++ D
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQKD 90
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSRSAELTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F +L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 ERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
ER C + C + F A+L RH++ H + F C +C + F R +L H+ T
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF + L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
F C +C + F R K H IH++ D
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQKD 90
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSRSADLTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 ERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
ER C + C + F ADL RH++ H + F C +C + F R +L H+ T
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
F C +C + F R K H IH++ D
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQKD 90
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F +L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 40 ECDMSFGTHQALGRHKQCKHMDISLRPFPC--DLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+C ++ + L H CKH +PFPC + CE+ F + HL H THTGE++ TC
Sbjct: 19 DCGAAYNKNWKLQAH-LCKH--TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Query: 98 GL--CFQSFYSKADLVRHMKGRH-LNIRSFTCHL--CNKGFFRKSYLKVHLLT 145
C F +KA++ +H H + I + CH C K F + + LKVH +
Sbjct: 76 DSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
F C +C + F R K H IH++ D
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQKD 90
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F +L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSQSGSLTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 92 ERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
ER C + C + F L RH++ H + F C +C + F R +L H+ T
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSF 124
+ F C C + F +L H +THT ER TC +C ++F + D +R + H + F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-RRQDHLRDHRYIHSKEKPF 74
Query: 125 TCHLCNKGFFRKSYLKVHLLTIHMQPAD 152
C C KGF + L VH T+HMQ +
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLHMQTSS 101
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 9 ESCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 66 ICGRKFARSDERKRHTK 82
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 60
Query: 123 SFTCHLCNKGFF----RKSYLKVHL 143
F C +C + F RK + K+HL
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F +L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 15 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 71
Query: 77 LNKSHLAYHVKTH 89
H K H
Sbjct: 72 ARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L RH + + +PF C +C + F HL H++THTGE+ C
Sbjct: 10 ESCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFARSDERKRHTK 83
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 123 SFTCHLCNKGFF----RKSYLKVHL 143
F C +C + F RK + K+HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F +L HI G K FQC C +F L H + +PF CD+C ++F
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTH 89
H K H
Sbjct: 73 ARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 92 ERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
ER C + C + F +L RH++ H + F C +C + F R +L H+ T
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 35 SFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
SF C C SF L H H D RP+PC C +RF KS + H HTGE+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLI-HSDT--RPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 95 VTCGLCFQSFYSKADLVRHMK 115
C +C ++F ++L+ H +
Sbjct: 58 HKCQVCGKAFSQSSNLITHSR 78
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 97 CGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEAQN 156
C +C +SF + L H+ H + R + C C K F +KS +K H IH
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTF-IH------TGE 55
Query: 157 AIHRCYAC 164
H+C C
Sbjct: 56 KPHKCQVC 63
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
GDK + C +C SF RH M + LRP+ C +C ++F K HL H+K HTG
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMS---MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 92 ERDVTCGLCFQSFYSKADLVRHM 114
+ C +C + F + RH+
Sbjct: 63 IKPYECNICAKRFMWRDSFHRHV 85
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTC 126
+PC C + F +KS H+ H G R CG+C + F K LV HMK H I+ + C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 127 HLCNKGFFRKSYLKVHLL--TIHMQPADEAQNAI 158
++C K F + H+ T + A QN
Sbjct: 69 NICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTT 102
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 24 EAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDI--SLRPFPCDLCEQRFLNKSH 81
+ H++ G + + C C F +H HM I ++P+ C++C +RF+ +
Sbjct: 26 DRHMSMHLGLRPYGCGVCGKKFKM-----KHHLVGHMKIHTGIKPYECNICAKRFMWRDS 80
Query: 82 LAYHVKT 88
HV +
Sbjct: 81 FHRHVTS 87
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNI-RSFTCH 127
C++C + F + HL H +H+GE+ +C +C F K + H++ ++ + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 128 LCNKGFFRKSYLKVHLLTIHMQPAD 152
C KGF R +L H+ +H P+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHL 82
L H + G+K + C C + F + H + H +P+ C C + F HL
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHL 81
Query: 83 AYHVK-THTG 91
H+K H+G
Sbjct: 82 NGHIKQVHSG 91
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 69 CDL--CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSF 124
CD C + + SHL H++THTGE+ C C F +L RH + +H + F
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPF 76
Query: 125 TCHLCNKGFFRKSYLKVHL 143
C +CN+ F R +L +H+
Sbjct: 77 QCGVCNRSFSRSDHLALHM 95
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 23 LEAHITTVHGDKSFQC--DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKS 80
L+AH+ T G+K ++C + CD F L RH + KH +PF C +C + F
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH--TGAKPFQCGVCNRSFSRSD 89
Query: 81 HLAYHVKTH 89
HLA H+K H
Sbjct: 90 HLALHMKRH 98
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 65 RPFPC--DLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLN 120
+P+ C + C+ RF L H + HTG + CG+C +SF L HMK RH N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHL 119
++PF C +C + F HL H++THTGE+ C +C + F + RH +H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHL 82
L HI T G+K F CD C F RH+ +H + P D E+ HL
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH----ILPILEDKVEELLSKNYHL 74
Query: 83 AYHV---KTHTGER 93
V K GER
Sbjct: 75 ENEVARLKKLVGER 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 72 CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLC 129
C + + SHL H++THTGE+ C C F +L RH + +H R F C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 72
Query: 130 NKGFFRKSYLKVHL 143
++ F R +L +H+
Sbjct: 73 DRAFSRSDHLALHM 86
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 23 LEAHITTVHGDKSFQC--DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKS 80
L+AH+ T G+K + C D C F L RH + KH RPF C C++ F
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH--TGHRPFQCQKCDRAFSRSD 80
Query: 81 HLAYHVKTH 89
HLA H+K H
Sbjct: 81 HLALHMKRH 89
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+P+ CD C +F L H + HTG R C C ++F L HMK
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 72 CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLC 129
C + + SHL H++THTGE+ C C F +L RH + +H R F C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 71
Query: 130 NKGFFRKSYLKVHL 143
++ F R +L +H+
Sbjct: 72 DRAFSRSDHLALHM 85
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 23 LEAHITTVHGDKSFQC--DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKS 80
L+AH+ T G+K + C D C F L RH + KH RPF C C++ F
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH--TGHRPFQCQKCDRAFSRSD 79
Query: 81 HLAYHVKTH 89
HLA H+K H
Sbjct: 80 HLALHMKRH 88
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+P+ CD C +F L H + HTG R C C ++F L HMK
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L H + + +PF C +C + F ++ L H++THTGE+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIR---IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFATLHTRTRHTK 83
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L+ HI G K FQC C +F +L H + +PF CD+C ++F
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ATLHTRTRHTKIHLRQKD 90
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 31/83 (37%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF K++L H++ HTG++
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK----------------------------- 33
Query: 123 SFTCHLCNKGFFRKSYLKVHLLT 145
F C +C + F +++ L H+ T
Sbjct: 34 PFQCRICMRNFSQQASLNAHIRT 56
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
F C++C + F + HL H ++HT E+ CGLC ++F + L+RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 96 TCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
C +C ++F + L RH + H N + + C LCN+ F R+ L H IH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 35 SFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHV-KTHTG 91
SF C+ C +F + L RH + + +P+PC LC + F + L H K H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR---SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+ ++CDEC SF L +H++ +P+ CD C + F+ +SHL H + HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR---THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
R + CD C + F + S L+ H +THTGE+ C C ++F ++ L+ H +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 93 RDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
R C C +SF +DL +H + H + + C C K F ++S+L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F KL+ H+ G K ++C CD + +L +H + H D RPF C +C
Sbjct: 18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSD--ERPFKCQICPYAS 74
Query: 77 LNKSHLAYHVKTHTGERDVTCG 98
N S L H+++HTG+ + G
Sbjct: 75 RNSSQLTVHLRSHTGDSGPSSG 96
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 63 SLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
S P C++C + F K L H++ HTG + C C + + L +H++ H + R
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDER 63
Query: 123 SFTCHLCNKGFFRKSYLKVHLLT 145
F C +C S L VHL +
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRS 86
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 37 QCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVT 96
+C+ C F L H +C ++P+ C C+ + S L H++ H+ ER
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCH---TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 97 CGLCFQSFYSKADLVRHMK 115
C +C + + + L H++
Sbjct: 67 CQICPYASRNSSQLTVHLR 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+P+ CD C+ F K +LA H HTGE+ C +C F A+L H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 19 MGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLN 78
MG H H DK ++CD C SF L HK + +P+ C++C +F
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT---VHTGEKPYRCNICGAQFNR 57
Query: 79 KSHLAYHVKTHTGER 93
++L H + H+GE+
Sbjct: 58 PANLKTHTRIHSGEK 72
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTC--GLCFQSFYSKADLVRHMKGRHLN 120
+P C C + + +L H+++HTGE+ C C ++F + +D +H H N
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 121 IRSFTCHL--CNKGFFRKSYLKVHLLTIH 147
+ + C L C K + S L+ H+ T+H
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ CD F L H + + +PF C +C + F + L H++THTGE+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIR---IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 99 LCFQSFYSKADLVRHMK 115
+C + F + RH K
Sbjct: 67 ICGRKFATLHTRDRHTK 83
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
F L+ HI G K FQC C +F H L +H + +PF CD+C ++F
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR---THTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ATLHTRDRHTKIHLRQKD 90
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 31/83 (37%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF K++L H++ HTG++
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK----------------------------- 33
Query: 123 SFTCHLCNKGFFRKSYLKVHLLT 145
F C +C + F + + L H+ T
Sbjct: 34 PFQCRICMRNFSQHTGLNQHIRT 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 65 RPFPC--DLCEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLN 120
+PFPC + CE+ F + HL H THTGE++ TC C F +KA++ +H R N
Sbjct: 32 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHN 90
Query: 121 IR 122
I+
Sbjct: 91 IK 92
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 64 LRPF--PCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+RP+ P + C++RF L H++ HTG++ C +C ++F L H++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 39 DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHT 90
+ CD F L RH + + +PF C +C + F HL H++THT
Sbjct: 25 ESCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 63 SLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
S RPF C+ C + + + S L+ H + H G R +C C + F ++++ RH+K
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 92 ERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPA 151
ER C C +++ + L RH + HL R +C C K F +S + HL +PA
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 33 DKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
++ F C+ C ++ L RH++ + RP C C + F ++S + H+K H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRR---AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 30 VHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDL--CEQRFLNKSHLAYHVK 87
HG + C EC +F L RH+ + +PF C C +RF +L HV+
Sbjct: 29 THGPRVHVCAECGKAFVESSKLKRHQL---VHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Query: 88 THTGERDVTCGL--CFQSFYSKADLVRHM 114
HTG+R C C + F +L H+
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTC 126
C C + F+ S L H HTGE+ C C + F +L H++ H R + C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVC 95
Query: 127 HL--CNKGFFRKSYLKVHLLT 145
CNK F + + LK H+LT
Sbjct: 96 PFDGCNKKFAQSTNLKSHILT 116
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 17 FLMGLKLEAHITTVHGDKSFQC--DECDMSFGTHQALGRHKQCKHMDISLRPFPC--DLC 72
F+ KL+ H G+K FQC + C F L H + D RP+ C D C
Sbjct: 44 FVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD---RPYVCPFDGC 100
Query: 73 EQRFLNKSHLAYHVKTHTGERD 94
++F ++L H+ TH ++
Sbjct: 101 NKKFAQSTNLKSHILTHAKAKN 122
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C +C + F K+HLA H KTHTGE+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGR 117
+ C+ C R S L H++THT R C C SF +K +L +HMK +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 36 FQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKT 88
+ C+EC + L +H + H D+ RP+ C C F K +L H+K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDV--RPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+P+ C C + F S L H + HTGE+ C C ++F + L+ H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 33 DKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHT 90
+K + C EC +F L +H++ + +P+ C C + F S L H + HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR---VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 19 MGLKLEAHIT-TVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFL 77
M +K + H V G + C C S+ +L RH + + +PC CE+ F
Sbjct: 5 MKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE---KKYPCRYCEKVFP 61
Query: 78 NKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
+ H HTGER C C +SF + + H+K H
Sbjct: 62 LAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTC 126
+ C +C++ ++ + L H H+ E+ C C + F +H + H R + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQC 81
Query: 127 HLCNKGFFRKSYLKVHLLTIHMQ-PADEAQNAIHRCYACR 165
C K F ++ H+ ++H Q P+ +++ ++R + CR
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDPSGDSK--LYRLHPCR 119
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHM 114
+PFPC C + F +L H +THTGE+ C C + F + +D +HM
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 17 FLMGLKLEAHITTVHGDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFPCDL--C 72
F KL HI G+K F C C F + L HK+ +PF C+ C
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR---THTGEKPFKCEFEGC 128
Query: 73 EQRFLNKSHLAYHVKTHTGER 93
++RF N S H+ HT ++
Sbjct: 129 DRRFANSSDRKKHMHVHTSDK 149
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 44 SFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVK-THTGERDVTCGLCF- 101
S + Q + + CK +D + P C++ F L HV H G + +C+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 102 -------QSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYLKVHLLT 145
+SF +K LV H++ H + F C C K F R LK+H T
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMKGRHL-NIRSFTCHLCNKGFFRKSYLKVHLLT 145
+TH+GE+ C +C F + H+ +H N+ F C C+ RKS L VHL
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 146 IH 147
H
Sbjct: 68 QH 69
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C+++F HL H +THTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
++P+ C C + F +KS+L H++THTGE+
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C+ C++ F KS+L H +THTGE + G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.034, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C++ F KS+L H +THTGE+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C+ C +RF SHL H + HTGE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
++P+ C+ C + F +KS+L H +THTGE + G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMKGRH---LNIRSFTCHLCNKGFFRKSYLKVHL 143
+THTGE+ C C ++F K L H K H +F C C K F R++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 144 LTIHMQPADEAQNA 157
E +N+
Sbjct: 68 DNCAGPDGVEGENS 81
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRP--FPCDLCEQRFLNKSHLAYHVKTH 89
G+K + C CD +F Q L H + ++ D + P F C C + F ++ +A H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 90 TGERDV 95
G V
Sbjct: 71 AGPDGV 76
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 72 CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMK 115
C + + SHL H +THTGE+ +C C + F +L RH +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.090, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
RP+ C +C + F ++S+L H K HTGE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F+ KSHL H + HTGE+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C +C RF K ++YHV++H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.13, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F +KS+L H++TH+GE+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 32 GDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTH 89
G CD C F Q L HK+ +H+ P C + F K HL H+K H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 90 TGERDVTC 97
+ RD C
Sbjct: 64 SDTRDYIC 71
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
C C + F + +L H++THTGE+ C C + K L H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTH 89
G S +C C F ++ L H + +P+ C+ CE K+ L YH++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLR---THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C+ C +RF S L H + HTGE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F KS L+ H +THTGE+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C C + F+ KSH H + HTGE + G
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF CD C++ F +S L H HTGE+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F +KS+L H + HTGE+
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C CE+ F +KS+L H +TH E+
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C + F HLA H++ HTGE+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
RPF C+ C + F +SHLA H++ H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHL 143
R F C+ C KGF R+S+L HL
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHL 32
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F SHLA H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.0 bits (71), Expect = 0.28, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMKGRH-LNIRSFTCHLCNKGFFRKSYLKVHLLTI 146
T GE C +C + + ++ RH H N++ + C C K F RK + H+ I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 147 H 147
H
Sbjct: 64 H 64
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 29 TVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVK 87
T G+ +++C C + RH H +++ +PC C + F K ++ HVK
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR-NVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F SHLA H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
+P+ C C + F+ HL H + HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ CD+C + F SHL H + HTGE+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGER 93
PF C C + F +K++L H K HTGER
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C +C + F KS L H + HTGE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C C + F+ S L H +TH+GE + G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F SHL H + HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
RP C+ C + F+ +HL H + HTGE+
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 0.45, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C+ C RF+ +HL HV HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD+C + F S L H + HTGE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.48, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F +S LA H TH+GE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF CD+C + F +S L H HT E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F KS L H ++HTGER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C C + F KS L H +THTGE + G
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+PC++C RF + L H++ HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F SHLA H + HTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.73, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C + F S LA H + HTGE+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F KS L H K HTGER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F S LA H + HTGE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ F C C +RF+ HL+ H+KTH ++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C+ C + F SHLA H + HTG
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.4 bits (67), Expect = 0.80, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYH-VKTHTGERD 94
+P+ CD+C +R+ N+ L+YH +H E +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEE 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
++P+ C C+++F + L HV+ HTGE+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F SHL H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F S LA H + HTGE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+RP+ C +C +RF K + H + HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+P+ C C + F+ KS L H + HTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ CD C + F K L H++ HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C +C + F SHL H H+GER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P C +C + F S L HV+ HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 63 SLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
S +PF C LCE +KS+L H+ H+ E+
Sbjct: 6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F++ S L H + HTGE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT 90
RPF C +C F K++ A H+K HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 90 TGERDVTCGLCFQSFYSKADLVRHMK 115
+G+R C +C +F +KA+ RH+K
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLK 28
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
+PF C C + F K +L H + HTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
RP+ C C + F KS L H ++HTGE+
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD+C + F + + L H + H+GE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C+ C + F KS L H + HTGE + G
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+P+ C++C + F+ +HL H++ HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F K++L H + HTGE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYH 85
G QC+ C + +L H++ ++ FPC+ C +RF +A H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C + + + HL H + HTGE+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + + +K +L H K HTGER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F +HL H + HTGE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F ++S+L H K HTGE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKT-HTGER 93
+ + C CE+RF + S+L H+KT H+ E+
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGER 93
F C C + F KS L+ H K HTGE+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHM 114
C +C + F +K H++ + C C +FYS L RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F + S+L+ H + HTGE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD C + F + L H + HTGE+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F SHLA H HTGE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 65 RPFPC--DLCEQRFLNKSHLAYHVKTHTGER 93
RPF C C +RF L H +THTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+P+ C+ C +RF+ S LA H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGER 93
F C+ C++ F S L H + HTGE+
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGER 93
F C++C + F + HL H ++HT E+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C C + F +S L H K HTGE+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
++P+ C C + F KS L H ++HTG
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C+ C + F+ KS L H +TH G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C C + F S L+ H + HTGE + G
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP 192
C G L G H GI ++W +E W P
Sbjct: 504 CGG--LSEGFHQAGISDTLWAIEMWDP 528
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 27 ITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMD 61
+T + S+ C+ C+ F T AL H + H D
Sbjct: 108 VTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 27 ITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMD 61
+T + S+ C+ C+ F T AL H + H D
Sbjct: 90 VTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 124
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 95 VTCGLCFQSFYSKAD---LVRHMKGRHLNIR 122
CG CF +YS+AD +R++ G L+ R
Sbjct: 57 TACGFCFVEYYSRADAENAMRYINGTRLDDR 87
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP 192
C G L G H GI ++W +E W P
Sbjct: 550 CGG--LSEGFHQAGISDTLWAIEMWDP 574
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C C + F K L H +TH GE + G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 93 RDVTCGLCFQSFYSKAD---LVRHMKGRHLNIR 122
+ CG CF +YS+AD +R++ G L+ R
Sbjct: 77 KKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F +S+L H HTGE+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C+ C + F KS L H HTG
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP 192
C G L G H GI ++W +E W P
Sbjct: 861 CGG--LSEGFHQAGISETLWAIEMWDP 885
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP 192
C G L G H GI ++W +E W P
Sbjct: 422 CGG--LSEGFHQAGISETLWAIEMWDP 446
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+PF C LC QR + S + H++TH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP 192
C G L G H GI ++W +E W P
Sbjct: 503 CGG--LSEGFHQAGISETLWAIEMWDP 527
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTH 89
++PF C C++ F HLA H K H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+PF C+ C + F S H ++H+GE+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F S+L H HTGE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C C + F K L H KTH+G+ + G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
RP+ C+ C + F SHL H+K H E+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKS 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGER 93
PF C+ C + F + +HL+ H H GE
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGEN 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 9.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C C + F + LA H + HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ C+ C + F S L+ H K HTGE+
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.484
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,422
Number of Sequences: 62578
Number of extensions: 278013
Number of successful extensions: 1198
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 515
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)