RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14799
(230 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 65.6 bits (161), Expect = 4e-14
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYH---VKT 88
G +C C F + L H KH +PF C C + + K +L H
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVH-NRKH--TGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
+ E+ TC +C ++F + +L HM H + C C++ F +K L+ H++ +H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH--LLTI 146
+G V C C + F SK L H + +H + F C C K +FRK L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 147 H 147
+
Sbjct: 61 N 61
Score = 39.8 bits (94), Expect = 1e-04
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYH-VKTHT 90
++ F C C +F L H H P+ C C Q+F+ K L H +K H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH-MVSH--TGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 91 GER 93
G
Sbjct: 120 GPS 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 63.6 bits (156), Expect = 9e-13
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
G+K + C EC SF L H+ R P+ C C + F +K L H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQ---------RTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 86 VKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+THTGE+ C C +SF +A+L H + H + + C C K F + ++L+ H
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAH 124
Score = 61.7 bits (151), Expect = 4e-12
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
G+K ++C EC SF L H+ R P+ C C + F +HL H
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQ---------RTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 86 VKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+THTGE+ C C +SF + +L H + H + + C C K F R+ L VH
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVH 180
Score = 46.3 bits (111), Expect = 1e-06
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 76 FLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFR 135
S GE+ C C +SF L H + H + + C C K F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61
Query: 136 KSYLKVH 142
K L H
Sbjct: 62 KKDLTRH 68
Score = 41.3 bits (98), Expect = 8e-05
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
G+K ++C EC SF L H+ R P+ C C + F + L H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQ---------RTHTGEKPYKCPECGKSFSRRDALNVH 180
Query: 86 VKTHTGER 93
+THTG++
Sbjct: 181 QRTHTGKK 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 61.5 bits (150), Expect = 3e-12
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQR-----FLNKSHLAYHVKT 88
+ D C F + + L H +H+ + F C F + L H++
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 89 HTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCH--LCNKGFFRKSYLKVHLL 144
HTGE+ C C +S+ +L H++ H + + C C+K F S H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 145 TIH 147
H
Sbjct: 121 RTH 123
Score = 57.2 bits (139), Expect = 1e-10
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 23 LEAHITTVH---GDKSFQCDECDMSFGTHQALGRHKQCKHMDI--SLRPFPCDL--CEQR 75
L HI + H K F C S ++ HM +P C C +
Sbjct: 19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS 78
Query: 76 FLNKSHLAYHVKTHTGERDVTC--GLCFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNK 131
+ +L H+++HTGE+ C C ++F + +D +H H N + + C L C K
Sbjct: 79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 132 GFFRKSYLKVH 142
+ S L+ H
Sbjct: 139 RYTDPSSLRKH 149
Score = 38.0 bits (89), Expect = 7e-04
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 32 GDKSFQCDE--CDMSFGTHQALGRHKQCKHMDISLRPFPCDL--CEQRFLNKSHLAYHVK 87
G+K + C+ C +F +H+ H + +P+ C L C +R+ + S L HVK
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN--EKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 88 THTG 91
T G
Sbjct: 152 TVHG 155
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 61.5 bits (150), Expect = 3e-12
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Query: 44 SFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGE---------RD 94
S + Q + + CK +D + P C++ F L HV
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 95 VTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYLKVHL 143
C +SF +K LV H++ H + F C C K F R LK+H
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 58.1 bits (141), Expect = 4e-11
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKH------MDISLRPFPCDLCEQRFLNKSHLAYH 85
S CD +F T L H +H + C + F K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 86 VKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYLKV 141
++ HTGE+ C C + F +L H + H + F C C++ F S K
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 142 H 142
H
Sbjct: 141 H 141
Score = 47.3 bits (113), Expect = 4e-07
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 23 LEAHITTVHGDKSFQ---------CDECDMSFGTHQALGRHKQCKHMDI--SLRPFPCDL 71
L H+T H Q C SF ++K H+ + +PFPC
Sbjct: 41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA-----KYKLVNHIRVHTGEKPFPCPF 95
Query: 72 --CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHM 114
C + F +L H +THTGE+ C C + F + +D +HM
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 30.3 bits (69), Expect = 0.24
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 98 GLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
G S + S C++ F L H+ H
Sbjct: 1 GSSGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 59.0 bits (144), Expect = 4e-12
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRS 123
++PF C +C + F HL H++THTGE+ C +C + F + RH +I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR--DIQHILP 58
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ + +L+
Sbjct: 59 ILEDKVEELLSKNYHLENE 77
Score = 45.6 bits (109), Expect = 4e-07
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHL 82
L HI T G+K F CD C F RH+ P D E+ HL
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHI---LPILEDKVEELLSKNYHL 74
Query: 83 AYHV---KTHTGER 93
V K GER
Sbjct: 75 ENEVARLKKLVGER 88
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 58.7 bits (143), Expect = 5e-12
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 81 HLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHL-NIRSFTCHLCNKGFFRKSYL 139
+TH+GE+ C +C F + H+ +H N+ F C C+ RKS L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 140 KVHLLTIH 147
VHL H
Sbjct: 62 GVHLRKQH 69
Score = 53.7 bits (130), Expect = 4e-10
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 22 KLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSH 81
+ T G+K ++C C F + H KH + ++ F C C+ KS
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE-NVAKFHCPHCDTVIARKSD 60
Query: 82 LAYHVKT-HTGER 93
L H++ H+
Sbjct: 61 LGVHLRKQHSYSG 73
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 58.7 bits (143), Expect = 7e-12
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK---GRHLNIR 122
C++C + F + HL H +H+GE+ +C +C F K + H++ G +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS--VGK 64
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIH 147
+ C C KGF R +L H+ +H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 42.9 bits (102), Expect = 4e-06
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVK-THT 90
G+K + C C + F + H + H +P+ C C + F HL H+K H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 91 GER 93
G
Sbjct: 91 GPS 93
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+G V C +C + F L RH H + ++C +C F RK + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYH 54
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 58.7 bits (143), Expect = 7e-12
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIR 122
C + + SHL H++THTGE+ C C F +L RH + +H R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR 64
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIHM 148
F C C++ F R +L +H+ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKR-HF 89
Score = 46.8 bits (112), Expect = 1e-07
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDL--CEQRFLNKSHLAYHVKTH 89
+ C ++ L H + H +P+ CD C +F L H + H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGE--KPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 90 TGERDVTCGLCFQSFYSKADLVRHMKGRHL 119
TG R C C ++F L HMK RH
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMK-RHF 89
Score = 27.5 bits (62), Expect = 1.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 117 RHLNIRSFTCHLCNKGFFRKSYLKVHL 143
+ + C K + + S+LK HL
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL 27
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYLKVH 142
T C +++ + L H++ H + + C C F R L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRH 56
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 56.5 bits (137), Expect = 5e-11
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 44 SFGTHQALGRHKQCKHMDISLRPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGL-- 99
S G+ + R CD C + + SHL H++THTGE+ C
Sbjct: 2 SSGSSGPDLEKR---------RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG 52
Query: 100 CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
C F +L RH + +H + F C +CN+ F R +L +H+
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 48.0 bits (115), Expect = 8e-08
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 23 LEAHITTVHGDKSFQC--DECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKS 80
L+AH+ T G+K ++C + CD F L RH + KH +PF C +C + F
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHT--GAKPFQCGVCNRSFSRSD 89
Query: 81 HLAYHVKTHT 90
HLA H+K H
Sbjct: 90 HLALHMKRHQ 99
Score = 44.5 bits (106), Expect = 1e-06
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLN 120
+P+ C C+ RF L H + HTG + CG+C +SF L HMK RH N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 55.6 bits (135), Expect = 2e-10
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 34 KSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
++ C C F + A+ +H H R C C + F+ S L H HTG
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLH-THGP---RVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 92 ERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYLKVHLLT 145
E+ C C + F +L H++ H R + C CNK F + + LK H+LT
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 52.9 bits (128), Expect = 2e-09
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDL--CEQ 74
+ H+ T HG + C EC +F L RH+ PF C C +
Sbjct: 23 MRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQ---------LVHTGEKPFQCTFEGCGK 72
Query: 75 RFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMK 115
RF +L HV+ HTG+R C C + F +L H+
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 54.3 bits (131), Expect = 2e-10
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT---GERDVTCGLCFQSFYSKADLVRHMKGRHLNI 121
C++C K+ L +H + H C C + F + H H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 122 RSFTCHLCNKGF 133
Sbjct: 66 LLAPQESSGPSS 77
Score = 52.4 bits (126), Expect = 1e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMKGRHLNI---RSFTCHLCNKGFFRKSYLKVHLLT 145
+G + C +C + KA L H + +H F C C K F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 146 IHMQPADEAQ 155
H Q
Sbjct: 61 SHPALLLAPQ 70
Score = 51.3 bits (123), Expect = 3e-09
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKH-MDISLRPFPCDLCEQRFLNKSHLAYHVKTHT 90
G QC+ C + +L H++ KH ++ FPC+ C +RF +A H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 91 GERDVTC 97
+
Sbjct: 63 PALLLAP 69
Score = 32.4 bits (74), Expect = 0.020
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 28 TTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLC 72
F C+ C F ++ H+ H L P +
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA--LLLAPQESS 73
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 54.1 bits (131), Expect = 3e-10
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 32 GDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFPCD--LCEQRFLNKSHLAYHVK 87
G CD C F Q L HK+ +H I + F C C + F K HL H+K
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 88 THTGERDVTCGLCFQSF 104
H+ RD C S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 50.2 bits (121), Expect = 8e-09
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVK-THTGERDVTC--GLCFQSFYSKADLVRHMKGRHL 119
PCD C + F N+ +L +H K H ++ +C C +SF K L HMK H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHS 64
Query: 120 NIRSFTCHLCNKGF 133
+ R + C
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 42.9 bits (102), Expect = 3e-06
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 89 HTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTC--HLCNKGFFRKSYLKVH 142
+G + C C + F ++ L H K +H++ +SF+C C K F K +LK H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 24.8 bits (55), Expect = 8.6
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 124 FTCHL--CNKGFFRKSYLKVHLLTIH 147
C C + F + YL H H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 54.4 bits (132), Expect = 3e-10
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR 122
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 123 SFTCHLCNKGFFRKSYLKVH 142
F C +C + F R K H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 50.2 bits (121), Expect = 9e-09
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 34 KSFQC--DECDMSFGTHQALGRHKQC----KHMDISLRPFPCDLCEQRFLNKSHLAYHVK 87
+ + C + CD F +L RH + K PF C +C + F HL H++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK-------PFQCRICMRNFSRSDHLTTHIR 55
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMK 115
THTGE+ C +C + F + RH K
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTK 83
Score = 45.9 bits (110), Expect = 4e-07
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRF 76
L HI G K FQC C +F L H R PF CD+C ++F
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI---------RTHTGEKPFACDICGRKF 72
Query: 77 LNKSHLAYHVKTHTGERD 94
H K H ++D
Sbjct: 73 ARSDERKRHTKIHLRQKD 90
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 54.8 bits (131), Expect = 5e-10
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRH-KQCKHM-DISLRPFPCDLCEQRFLNKS 80
+ + + G F+C +C ++ T L H + H D + + K
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 81 HLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
L ++ + C C SF S DL HM
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 40.5 bits (94), Expect = 5e-05
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 80 SHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYL 139
S + TG C C ++ + +L HM H + ++
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHETDNNNPKRWSK 62
Query: 140 KVHLLTIHMQPADEAQNAIHRCYACRCA 167
+ M+ ++AQ + +C C +
Sbjct: 63 PRKRSLLEMEGKEDAQ-KVLKCMYCGHS 89
Score = 28.2 bits (62), Expect = 1.1
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 22 KLEAHITTVHGDKSFQCDECDMSFGTHQALGRH-KQCKHM 60
L K +C C SF + Q L H + KH
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 54.4 bits (132), Expect = 5e-10
Identities = 32/123 (26%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 32 GDKSFQCDE--CDMSFGTHQALGRHKQCKHMDISLR------PFPCDL--CEQRFLNKSH 81
+ F C C+ + L H R P+ CD CE+RF
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHS---------RKHTGEKPYQCDFKDCERRFSRSDQ 53
Query: 82 LAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHL--CNKGFFRKSYL 139
L H + HTG + C C + F L H + H + F+C C K F R L
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDEL 112
Query: 140 KVH 142
H
Sbjct: 113 VRH 115
Score = 49.8 bits (120), Expect = 2e-08
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 23 LEAHITTVHGDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQ 74
L+ H G+K +QCD +C+ F L RH+ R PF C C++
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ---------RRHTGVKPFQCKTCQR 74
Query: 75 RFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMK 115
+F HL H +THTGE+ +C C + F +LVRH
Sbjct: 75 KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 55.3 bits (134), Expect = 8e-10
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 32 GDKSFQCDE--CDMSFGTHQALGRHKQCKHMDISLRPFPCDL--CEQRFLNKSHLAYHVK 87
G+K+F CD CD+ F T + +H + +I + + C C + F + L H
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 88 THTGERDVTC--GLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
+HT + C C + F + L RH K H C+ + H+
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Query: 146 IH 147
H
Sbjct: 187 CH 188
Score = 49.5 bits (119), Expect = 1e-07
Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 22 KLEAHITTVHGDKSFQCDE--CDMSFGTHQALGRHKQCKHMDISLR------PFPCD--L 71
KL+AH+ G+K F C E C+ F + L RH F CD
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS---------LTHTGEKNFTCDSDG 79
Query: 72 CEQRFLNKSHLAYHVKTHTGERDV--TCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCH 127
C+ RF K+++ H + C C ++F L H H + C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECP 138
Query: 128 --LCNKGFFRKSYLKVH 142
C+K F S LK H
Sbjct: 139 HEGCDKRFSLPSRLKRH 155
Score = 43.0 bits (102), Expect = 2e-05
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 23 LEAHITTVHGDKSFQ----CDECDMSFGTHQALGRHKQCKHMDISLRPFPC--DLCEQRF 76
++ H H K + C +F H L H Q H P+ C + C++RF
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSH--TQQLPYECPHEGCDKRF 146
Query: 77 LNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
S L H K H G C + ++H+ H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 42.2 bits (100), Expect = 3e-05
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTC--GLCFQSFYSKADLVRHMKGRHLN 120
+ + C C + L H+ HTGE+ C C + F S L RH H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTG 69
Query: 121 IRSFTC--HLCNKGFFRKSYLKVH 142
++FTC C+ F K+ +K H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKH 93
Score = 31.0 bits (71), Expect = 0.19
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 85 HVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCH--LCNKGFFRKSYLK 140
+ C C ++ L H+ +H + F C C KGF +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 141 VHLLT 145
H LT
Sbjct: 62 RHSLT 66
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 51.8 bits (125), Expect = 1e-09
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMK-GRHLNIRSFTCHLCNKGFFRKSYLKVHLLTI 146
T GE C +C + + ++ RH N++ + C C K F RK + H+ I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 147 H 147
H
Sbjct: 64 H 64
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
G+ +++C C + RH +++ +PC C + F K ++ HVK
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYV-TSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKT--HTGERDVTCGLCFQSFYSKADLVRHMK 115
+ C +C + + + S+ H T + C CF+ F K ++ H+K
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 52.8 bits (128), Expect = 1e-09
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSF 124
P C++C + F K L H++ HTG + C C + + L +H++ H + R F
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPF 65
Query: 125 TCHLCNKGFFRKSYLKVH 142
C +C S L VH
Sbjct: 66 KCQICPYASRNSSQLTVH 83
Score = 51.3 bits (124), Expect = 4e-09
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQC----KHMDISLRPFPCDLCEQRFLNKSHLAYHVK 87
+C+ C F L H +C K P+ C C+ + S L H++
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK-------PYKCKTCDYAAADSSSLNKHLR 57
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMK 115
H+ ER C +C + + + L H++
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 44.7 bits (107), Expect = 1e-06
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
G K ++C CD + +L +H + H D RPF C +C N S L H+++HTG
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLR-IHSD--ERPFKCQICPYASRNSSQLTVHLRSHTG 89
Query: 92 ERDVTCG 98
+ + G
Sbjct: 90 DSGPSSG 96
Score = 36.6 bits (86), Expect = 0.001
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+ C +C + F K L HM+ H ++ + C C+ S L H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKH 55
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 51.9 bits (125), Expect = 2e-09
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 38 CDECDMSFGTHQALGRHKQCKHMDISLRPFPCD--LCEQRFLNKSHLAYHVKTHTGERDV 95
+ C +F H L H Q H P+ C C++RF S L H K H G
Sbjct: 6 FENCGKAFKKHNQLKVH-QFSH--TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 96 TCGLCFQSFYSKADLVRHMKGRH 118
C + ++H+ H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 45.3 bits (108), Expect = 6e-07
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 68 PCDLCEQRFLNKSHLAYHVKTHTGERDVTC--GLCFQSFYSKADLVRHMKGRHLNIRSFT 125
+ C + F + L H +HT + C C + F + L RH K H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKK 63
Query: 126 CHLCNKGFFRKSYLKVHLLTIH 147
C+ + H+ H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 51.8 bits (125), Expect = 2e-09
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKH-MDISLRPFPCDLCEQRFLNKSHLAYHVKTHT 90
G+K + C CD +F Q L H + H + F C C + F ++ +A H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
Query: 91 GERDVTCGLCFQSF 104
G V S
Sbjct: 72 GPDGVEGENSGPSS 85
Score = 50.2 bits (121), Expect = 9e-09
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 81 HLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK---GRHLNIRSFTCHLCNKGFFRKS 137
+THTGE+ C C ++F K L H K + +F C C K F R++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 138 YLKVH 142
+ H
Sbjct: 62 TMARH 66
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDV----TCGLCFQSFYSKADLVRHMKGRHLN 120
+P+ C C++ F K L H K + V C C ++F + + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAG 72
Query: 121 IRSFTCHLCNKGF 133
Sbjct: 73 PDGVEGENSGPSS 85
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 52.4 bits (127), Expect = 2e-09
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
GDK + C +C SF RH M + LRP+ C +C ++F K HL H+K HTG
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMS---MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 92 ERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYL 139
+ C +C + F + RH+ +S+ + S
Sbjct: 63 IKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGP 107
Score = 37.4 bits (88), Expect = 6e-04
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+G++ C C +SF K+ RHM HL +R + C +C K F K +L H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGH 56
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 51.8 bits (123), Expect = 4e-09
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 20 GLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNK 79
G + + V + +QC C+ + G H++ C C RF +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----NAAVCPYCSLRFFSP 55
Query: 80 SHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
H ++ + +TC C ++F S + RH H
Sbjct: 56 ELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 44.1 bits (103), Expect = 2e-06
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSF 124
+ C LC + + H + C C F+S H +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE--SKCEYKKL 70
Query: 125 TCHLCNKGFFRKSYLKVHLLTIHMQ 149
TC C + F + H + +H Q
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 30.3 bits (67), Expect = 0.19
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
+ C LC S + H + + C C+ FF + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEH 61
Score = 26.0 bits (56), Expect = 4.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 31 HGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRP 66
K C EC +F + ++ RH+ H ++ P
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP 100
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.6 bits (122), Expect = 4e-09
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
P C C +K+ L H + H +R C C ++L +HMK
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 49.0 bits (118), Expect = 2e-08
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+C EC S + AL H + H + RPF C+ C S+L+ H+K G
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIH-ERIH--CTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 92 E 92
+
Sbjct: 63 D 63
Score = 42.1 bits (100), Expect = 6e-06
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
+ + C C S SKA L H + H R F C+ C+ + S L H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 51.7 bits (125), Expect = 4e-09
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSF 124
+ F C C + F +L H +THT ER TC +C ++F + L H H + F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPF 74
Query: 125 TCHLCNKGFFRKSYLKVH 142
C C KGF + L VH
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 46.7 bits (112), Expect = 2e-07
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
K F C C F L H+ R P+ CD+C + F + HL H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHE---------RTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 86 VKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
H+ E+ C C + F L H
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 43.6 bits (104), Expect = 4e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 79 KSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSY 138
S + +++ C C + F +L+ H + H + R +TC +C+K F R+ +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDH 60
Query: 139 LKVH 142
L+ H
Sbjct: 61 LRDH 64
Score = 39.0 bits (92), Expect = 1e-04
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
++ + CD C +F L H+ PF C C + F LA H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHR---------YIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 86 VKTHTGERDVTC 97
H T
Sbjct: 93 KTLHMQTSSPTA 104
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.3 bits (111), Expect = 1e-07
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
R F C++C + F + HL H ++HT E+ CGLC ++F + L+RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 37.5 bits (88), Expect = 2e-04
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYHV- 86
+SF C+ C +F + L RH R P+PC LC + F + L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY---------RSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Query: 87 KTHTGE 92
K H+G
Sbjct: 52 KIHSGN 57
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 122 RSFTCHLCNKGFFRKSYLKVH 142
RSF C +C + F R+ +LK H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
Score = 26.3 bits (59), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQ 56
+K + C C+ +F L RH Q
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHAQ 51
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 46.3 bits (111), Expect = 2e-07
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 35 SFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERD 94
SF C C SF L H H D RP+PC C +RF KS + H HTGE+
Sbjct: 1 SFDCKICGKSFKRSSTLSTH-LLIHSD--TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 95 VTCGLCFQSFYSKADLVRHMK 115
C +C ++F ++L+ H +
Sbjct: 58 HKCQVCGKAFSQSSNLITHSR 78
Score = 45.9 bits (110), Expect = 3e-07
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHL 128
C +C + F S L+ H+ H+ R C C + F+ K+D+ +H H + C +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQV 62
Query: 129 CNKGFFRKSYLKVH 142
C K F + S L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 34.7 bits (81), Expect = 0.003
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 15/66 (22%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
+ + C C F + +H P C +C + F S+L H
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHT---------FIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 86 VKTHTG 91
+ HTG
Sbjct: 77 SRKHTG 82
Score = 25.5 bits (57), Expect = 5.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 123 SFTCHLCNKGFFRKSYLKVHLLTIH 147
SF C +C K F R S L HLL IH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLL-IH 24
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 45.0 bits (107), Expect = 5e-07
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 23 LEAHITTVHGDKSFQCD--ECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKS 80
L ++ + + C CD F L RH + H +PF C +C + F
Sbjct: 9 LLNYVVP--KMRPYACPVESCDRRFSRSDELTRHIR-IHTGQ--KPFQCRICMRNFSRSD 63
Query: 81 HLAYHVKTHT 90
HL H++THT
Sbjct: 64 HLTTHIRTHT 73
Score = 42.3 bits (100), Expect = 4e-06
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
RP+ C + C++RF L H++ HTG++ C +C ++F L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-TH 72
Score = 36.9 bits (86), Expect = 4e-04
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 80 SHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKS 137
++L + R C + C + F +L RH++ H + F C +C + F R
Sbjct: 7 NNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSD 63
Query: 138 YLKVHLLT 145
+L H+ T
Sbjct: 64 HLTTHIRT 71
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 43.6 bits (104), Expect = 2e-06
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 80 SHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYL 139
H +H ++ C C SF K +L H H + + C++C F R + L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANL 61
Query: 140 KVH 142
K H
Sbjct: 62 KTH 64
Score = 42.4 bits (101), Expect = 4e-06
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 15/81 (18%)
Query: 19 MGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLC 72
MG H H DK ++CD C SF L HK P+ C++C
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK---------TVHTGEKPYRCNIC 51
Query: 73 EQRFLNKSHLAYHVKTHTGER 93
+F ++L H + H+GE+
Sbjct: 52 GAQFNRPANLKTHTRIHSGEK 72
Score = 40.9 bits (97), Expect = 1e-05
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
P+ CD C+ F K +LA H HTGE+ C +C F A+L H +
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 42.2 bits (99), Expect = 3e-06
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLC 100
+ C++C + F + HL H +H+GE+ + G
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 27.6 bits (61), Expect = 0.58
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHLLT 145
+ C +C K F +L H L+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 43.0 bits (101), Expect = 5e-06
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 88 THTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLC--------NKGFFRKSYL 139
+ C ++F + +LV H+ H+ H+C K F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 140 KVHLLT 145
H+
Sbjct: 79 VNHIRV 84
Score = 42.6 bits (100), Expect = 6e-06
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 56 QCKHMDISLRPFPCDLCEQRFLNKSHLAYHV-KTHTGERD--------VTCGLCFQSFYS 106
CK +D + P C++ F L HV H G + C +SF +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 107 KADLVRHMKGRHLNIRSFTC 126
K LV H++ H +S
Sbjct: 75 KYKLVNHIR-VHTGEKSGPS 93
Score = 41.9 bits (98), Expect = 1e-05
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 31 HGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRP------FPCDLCEQRFLNKSHLAY 84
S CD +F T L H +H+ + C + F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 85 HVKTHTGERDVTC 97
H++ HTGE+
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 28.8 bits (64), Expect = 0.53
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 7/58 (12%)
Query: 118 HLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEAQNAIHRCYACRCAGHCLQIGT 175
S C++ F L H+ H+ ++ + C C + G
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ------NNHVCYWEE-CPREGK 70
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 41.3 bits (98), Expect = 1e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
R + CD C + F + S L+ H +THTGE+ C C ++F ++ L+ H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 40.9 bits (97), Expect = 1e-05
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 79 KSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSY 138
R C C +SF +DL +H + H + + C C K F ++S+
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 139 LKVH 142
L H
Sbjct: 62 LIGH 65
Score = 39.3 bits (93), Expect = 5e-05
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLR------PFPCDLCEQRFLNKSHLAYH 85
+ ++CDEC SF L +H+ R P+ CD C + F+ +SHL H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHR---------RTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 86 VKTHTGER 93
+ HTG
Sbjct: 66 HRVHTGSG 73
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.1 bits (93), Expect = 3e-05
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
C+ C R S L H++THT R C C SF +K +L +HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.9 bits (90), Expect = 6e-05
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 36 FQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ C+EC + L +H + RP+ C C F K +L H+K+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV---RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 29.3 bits (65), Expect = 0.15
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 96 TCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
C C + L +H++ H ++R + C CN F K L H+ +
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.1 bits (62), Expect = 0.36
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQ 56
L+ HI T + + C C+ SF T L +H +
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 39.4 bits (93), Expect = 3e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+PC++C RF + L H++ HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 31.7 bits (73), Expect = 0.017
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHM 114
+ GE+ C +C F L H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+P+ C C + F S L H + HTGE+ C C ++F + L+ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 39.8 bits (94), Expect = 4e-05
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
G+K + C EC +F L +H Q H +P+ C C + F S L H + HT
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQH-QRVHT--GEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Query: 92 ER 93
Sbjct: 68 GP 69
Score = 36.7 bits (86), Expect = 5e-04
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 82 LAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKV 141
+ H+GE+ C C ++F + LV+H + H + + C C K F + S L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 142 H 142
H
Sbjct: 61 H 61
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.1 bits (89), Expect = 7e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C C++ F + + L H K HT + + G
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 30.8 bits (70), Expect = 0.029
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+GE+ +C C ++F LV+H K
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C RF+ +HL HV HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 29.0 bits (66), Expect = 0.14
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHM 114
+ GE+ C C F A L H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 23.6 bits (52), Expect = 10.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 124 FTCHLCNKGFFRKSYLKVHLLT 145
+ C C F + ++L+ H+L
Sbjct: 12 YKCETCGARFVQVAHLRAHVLI 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.5 bits (89), Expect = 1e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
GD+S +C +C + F L R K C+ C + ++ L +G
Sbjct: 15 GDRSQKCSKCGIIFIRRSTLSRRK----------TPMCEKCRKDSCQEAALNKDEGNESG 64
Query: 92 ER 93
++
Sbjct: 65 KK 66
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 80 SHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYL 139
K H G+R C C F ++ L R ++ C C K +++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAAL 55
Query: 140 KVH 142
Sbjct: 56 NKD 58
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 37.6 bits (86), Expect = 1e-04
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C +C RF K ++YHV++H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C CE+ F +KS+L H +TH E+
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 27.5 bits (62), Expect = 0.47
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C K F KSYL VH
Sbjct: 11 FGCSCCEKAFSSKSYLLVH 29
Score = 26.7 bits (60), Expect = 1.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRH 113
+GE+ C C ++F SK+ L+ H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
RP+ C+ C + F SHL H+K H E+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 29.8 bits (68), Expect = 0.076
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ +GER C C ++F + L+ H+K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.1 bits (90), Expect = 2e-04
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 76 FLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFR 135
L++S Y + C LC F S L +H++ + C +C K F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTS 112
Query: 136 KSYLKVHLLTIH 147
H+ H
Sbjct: 113 TDSALDHVCKKH 124
Score = 38.4 bits (88), Expect = 4e-04
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRS 123
F C LC F + L H++ E C +C + F S + H+ +H S
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 34.9 bits (79), Expect = 0.007
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 26 HITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYH 85
+ F C C M F + +L +H + C +C++ F + H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-----HTKVCPVCKKEFTSTDSALDH 119
Query: 86 V-KTHTG 91
V K H
Sbjct: 120 VCKKHNI 126
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C C + F K L H +TH GE + G
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 28.6 bits (65), Expect = 0.21
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRH 113
+GE C C ++F K L+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.8 bits (88), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGERDVTCGL--CFQSFYSKADLVRHMK 115
R C C + + SHL H +THTGE+ +C C + F +L RH +
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 27.4 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 115 KGRHLNIRSFTCHL--CNKGFFRKSYLKVHLLT 145
+ IRS C C K +F+ S+LK H T
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 37.2 bits (87), Expect = 2e-04
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGF 133
+ + + C C + F L H+K H + R C + G
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 36.8 bits (86), Expect = 3e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVK-THTGERDVTCGLCFQSF 104
+P+ C C + F HL H+K HT ER C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 30.6 bits (70), Expect = 0.054
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 124 FTCHLCNKGFFRKSYLKVHLLTIH 147
+ C C KGF R +L H+ +H
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH 36
Score = 28.7 bits (65), Expect = 0.26
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRF 76
K + C C F L H + H S RP C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHT--SERPHKCQVWVSGP 51
Score = 25.2 bits (56), Expect = 3.7
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 23 LEAHITTVH-GDKSFQCDECDMSFGT 47
L HI VH ++ +C +
Sbjct: 28 LNGHIKQVHTSERPHKCQVWVSGPSS 53
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+P+ C+ C++ F KS+L H +THTGE + G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 28.2 bits (64), Expect = 0.24
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F +K++L+ H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.8 bits (83), Expect = 4e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
R F C++C + F + HL H ++HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHLLT 145
RSF C +C + F R+ +LK H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.0 bits (83), Expect = 5e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
PF C C++ F +++L H +TH + + G
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 29.8 bits (67), Expect = 0.085
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 25 AHITTVHGDKSFQCDECDMSFGTHQALGRHK 55
+ ++ G+ F+C +CD F L +H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 26.4 bits (58), Expect = 1.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ GE C C + F + LV+H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 25.2 bits (55), Expect = 3.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C++ F +++YL H
Sbjct: 13 FKCSKCDRVFTQRNYLVQH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 5e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C C + F K L H KTH+G+ + G
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 28.2 bits (64), Expect = 0.29
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE C C + F K LV H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C+ C + F +KS+L H +THTGE + G
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG + C C ++F SK+ L+ H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 25.1 bits (56), Expect = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C+ C K F KSYL +H
Sbjct: 15 CNECGKAFRSKSYLIIH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+PF C C++ F HLA H K H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.011
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNI 121
+ TG + C C +SF L H K RH+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHMLV 37
Score = 27.7 bits (62), Expect = 0.35
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 117 RHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHM 148
I+ F C C++ F R +L +H HM
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKR-HM 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
RPF C+ C + F +SHLA H++ H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 27.1 bits (61), Expect = 0.78
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GER C C + F ++ L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 25.6 bits (57), Expect = 2.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C+ C KGF R+S+L H
Sbjct: 13 FKCNECGKGFGRRSHLAGH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
P+ C CE+ F K L H + HT E+
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Score = 27.5 bits (62), Expect = 0.56
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ G C C +SF K L+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 24.0 bits (53), Expect = 8.7
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C C K F K L VH
Sbjct: 15 CSQCEKSFSGKLRLLVH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
P+ C C + F KS L H ++HTGER
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 27.9 bits (63), Expect = 0.36
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F K+ L H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 24.0 bits (53), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ C C K F RKS L +H
Sbjct: 13 YKCSDCGKAFTRKSGLHIH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C +C + F K+HLA H KTHTGE+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.29
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C ++F KA L +H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
P+ C+ C + F+ KS L H +TH G + G
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 26.7 bits (60), Expect = 0.90
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C ++F K+ L+ H
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 24.0 bits (53), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C+ C K F KS L VH
Sbjct: 15 CNECGKAFIWKSLLIVH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C+ C +RF SHL H + HTGE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.92
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C + F + L H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C++ F KS+L H +THTGE+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F +K++L+ H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 24.4 bits (54), Expect = 5.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C K F KS L VH
Sbjct: 13 FECSECQKAFNTKSNLIVH 31
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 36.3 bits (83), Expect = 0.001
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQCKHMDISLRP-FPCDLCEQRFLNKSHLAYHV-KTHTG 91
++C C H +H ++ L + C C L+ H K H G
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 92 ERDVTCGL 99
E + +
Sbjct: 77 EENFKLTM 84
Score = 32.8 bits (74), Expect = 0.023
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 80 SHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIR---SFTCHLCNKGFFRK 136
H ++ + E C C H+ H N+ S+ C CN R
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 137 SYLKVHLLTIH 147
L H L H
Sbjct: 64 DALSEHNLKYH 74
Score = 25.5 bits (55), Expect = 7.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 26 HITTVHGD----KSFQCDECDMSFGTHQALGRHKQCKH 59
H+ + H + S+ C EC+ + AL H H
Sbjct: 37 HVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 25/161 (15%), Positives = 42/161 (26%), Gaps = 61/161 (37%)
Query: 60 MD-ISLRPF-------------PCDL---CEQ---RFLNKSHLAYHVKTHTGERDVTCGL 99
MD S RP P Q +F L + + + T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAADDEPT--- 55
Query: 100 CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKG--------------FFRKSYLK---VH 142
+ A+LV G+ L + L F YL+ +H
Sbjct: 56 ------TPAELV----GKFL---GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 143 LLTIHMQPADE----AQNAIHRCY--ACRCAGHCLQIGTHS 177
L + ++ + + Y A A ++S
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F +KS+L H++TH+GE+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.15
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ GE+ C C ++F SK+ L+ H
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 24.8 bits (55), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ C C K F KSYL +H
Sbjct: 13 YGCSECGKAFSSKSYLIIH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
PF C C + F +K++L H K HTGER
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE C C + F K +L+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 34.5 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD C + F K L H++ HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 28.3 bits (64), Expect = 0.22
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ GE+ C C ++F K L+ H++
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P C C + F KS L H +TH ++
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.9 bits (63), Expect = 0.33
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F K+ L+ H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 24.8 bits (55), Expect = 4.4
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
C C K F KS L +H
Sbjct: 13 CKCTECGKAFCWKSQLIMH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F KS L H ++HTG +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 29.0 bits (66), Expect = 0.15
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG + C C ++F K+ L+ H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 24.4 bits (54), Expect = 6.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ C C K F KS L VH
Sbjct: 13 YGCSQCAKTFSLKSQLIVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+ + CD+C + F SHL H + HTGE+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 1.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ GE+ C +C + F + L H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F KS L+ H +THTGE+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.25
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C ++F K+ L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 24.4 bits (54), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ C+ C K F +KS L H
Sbjct: 13 YGCNECGKTFSQKSILSAH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F+ KSHL H + HTGE+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.083
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF K+ L RH
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.002
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F+ HL H + HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 27.1 bits (61), Expect = 0.72
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +G++ C C ++F L +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 34.2 bits (79), Expect = 0.002
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
P+ C C + F + LA H ++ +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 28.4 bits (64), Expect = 0.19
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ GE CG C +SF + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 24.2 bits (53), Expect = 7.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 115 KGRHLNIRSFTCHLCNKGFFRKSYLKVH 142
G + C C K F ++ L VH
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C+ C +RF S L H + HTGE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.64
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C + F + L H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C+ C + F S H ++H+GE+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.14
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C + FY+ + H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.1 bits (53), Expect = 9.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C KGF+ S H
Sbjct: 13 FKCEECGKGFYTNSQCYSH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F+ KS L H + HTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.064
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF K+ L H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 24.0 bits (53), Expect = 8.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C C K F +KS L VH
Sbjct: 15 CSDCGKSFIKKSQLHVH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + + + HL H + HTGE+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.33
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ CG C +S+ + L +H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ C C + F KSHL H + HTGE+
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 27.9 bits (63), Expect = 0.38
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ + + C C + F K+ L +H +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 24.0 bits (53), Expect = 7.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
CH C +GF KS+L H
Sbjct: 13 HQCHECGRGFTLKSHLNQH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F KS L H K HTGER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 28.3 bits (64), Expect = 0.30
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF K+ L H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
RP+ C C + F KS L H ++HTGE+
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.13
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG+R C C ++F +K+ L+ H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F L H THT E+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 27.9 bits (63), Expect = 0.42
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ GE+ C C +SF L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ + C C+ F S L H H GE+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
Score = 27.1 bits (61), Expect = 0.76
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ GE+ C C F + L H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + F K +L H + HTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.8 bits (68), Expect = 0.077
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG++ C C +SF +K +LV H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
RP C+ C + F+ +HL H + HTGE+
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.046
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGER C C +SF A L++H
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+ + C+ C + F HL H K HT + + G
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 29.5 bits (67), Expect = 0.098
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ T + C C ++F L RH K
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF CD+C + F +S L H HT E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 28.2 bits (64), Expect = 0.25
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C +SF ++ L RH
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 24.8 bits (55), Expect = 5.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHK 55
G+K F+CD C SF L RH
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHS 32
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
R + C C + F K L H + HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 25.6 bits (57), Expect = 2.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRH 113
+G+R C C +SF K L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.003
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + F HLA H++ HTGE+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.94
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C ++F L H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.004
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
RP+ C +C + F ++S+L H K HTGE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.085
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGER C +C ++F +++L++H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
R + C C + F KS L H + HTGE+
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 29.8 bits (68), Expect = 0.078
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGER C C ++F K+ L+ H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ F C+ C++ F S L H + HTGE+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 26.7 bits (60), Expect = 1.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ G++ C C ++F + L H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+ F C C + F KS L+ H K HTGE+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.30
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG + C C ++F K+ L H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 24.0 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C K F RKS L +H
Sbjct: 13 FECTECGKAFTRKSTLSMH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHLA H + HTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 26.7 bits (60), Expect = 0.85
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
P+ C C + F K L H +TH GE+
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.15
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE C C ++F K L+ H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.9 bits (79), Expect = 0.004
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 95 VTCGLCFQSFY-SKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
C C + L +HM+ + C C K F K+ L H + H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 29.9 bits (66), Expect = 0.25
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 30 VHGDKSFQCDECDM-SFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKT 88
+H C C++ + T L +H + C C ++F +K+ L YH
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD--ALKCQHCRKQFKSKAGLNYHTMA 76
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + + +K +L H K HTGER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 27.5 bits (62), Expect = 0.49
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + + SK +L H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHLA H + HTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 28.3 bits (64), Expect = 0.29
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + L RH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.0 bits (76), Expect = 0.004
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTGER 93
RPF C C +RF L H +THTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 33.3 bits (77), Expect = 0.005
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + F +S L H K HTGE+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.49
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F ++ L H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 24.4 bits (54), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
F C C KGF R+S L VH
Sbjct: 13 FKCVECGKGFSRRSALNVH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
R C C + FL S+ H + HTGE+
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 29.8 bits (68), Expect = 0.072
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ GER C C + F ++ ++H
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 24.0 bits (53), Expect = 7.9
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 26 HITTVHGDKSFQCDECDMSFGTHQALGRH 54
++ HG++ +C +C F +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.0 bits (76), Expect = 0.005
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C RF L+ H ++H+G +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 30.3 bits (69), Expect = 0.047
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 85 HVKTHTGERDVTCG--LCFQSFYSKADLVRHMKGRHLNIRSFTC 126
+ TGE+ C C F +L RH + H ++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGP 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.005
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C +C + F KS L H + HTGE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.51
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C +SF K+ L H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 24.4 bits (54), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C +C K F +KS L VH
Sbjct: 15 CSICGKSFTKKSQLHVH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.005
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHLA H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.94
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + L RH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCG 98
+PF C C F L H+++H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.9 bits (68), Expect = 0.063
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ TGE+ C C +F L +H++
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 27.2 bits (61), Expect = 0.68
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 25 AHITTVHGDKSFQCDECDMSFGTHQALGRHK 55
+ ++ G+K FQC EC M+F +L +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F +S LA H TH+GE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.67
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F +++ L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + F S LA H + HTGE+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.47
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF + L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHL H + HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C + F + L H
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.8 bits (76), Expect = 0.006
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHL H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 1.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + LVRH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
R + C C + F+ KS L+ H + H GE+
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.29
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGER C C ++F K+ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F ++S+L H K HTGE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.6 bits (65), Expect = 0.21
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F +++L H
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + + + L +H + HTGE+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 27.9 bits (63), Expect = 0.40
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C + + + DL H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.4 bits (54), Expect = 7.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 124 FTCHLCNKGFFRKSYLKVH 142
+ C C KG+ R+ L H
Sbjct: 13 YKCVECGKGYKRRLDLDFH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F K++L H + HTGE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ CG C ++F KA+L +H
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.8 bits (76), Expect = 0.007
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F SHLA H HTGE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ TGE+ C C + F + L RH
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + + + +L H + H GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 26.3 bits (59), Expect = 1.2
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ + E+ C C + + + +L H
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.008
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F +S+L H K HT ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F +++L++H
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 34.6 bits (78), Expect = 0.008
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
QC C + H Q + +R + + + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 94 D--VTCGLCFQSFYSKADLVRHMKGR 117
D C +C +F S H G+
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGK 116
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.009
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C++C + F+ +HL H++ HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 28.2 bits (64), Expect = 0.28
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ TGE+ +C +C ++F A L +H++
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+PF C C + F + L H + HTGE+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.32
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F L +H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 24.4 bits (54), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHK 55
G+K F C +C +F H L +H+
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQHR 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD C + F + L H + HTGE+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 28.6 bits (65), Expect = 0.19
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C ++F A+LVRH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F + S+L+ H + HTGE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.011
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F SHLA H HTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.69
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG++ C C + F + L RH
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F +S L H HTG++
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 27.5 bits (62), Expect = 0.58
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F ++ L H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.012
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ CD+C + F S L H + HTGE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 27.1 bits (61), Expect = 0.71
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C +SF + L H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 31.8 bits (72), Expect = 0.012
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGERD 94
F C C +RF+ HL+ H+ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.6 bits (81), Expect = 0.012
Identities = 9/77 (11%), Positives = 18/77 (23%), Gaps = 3/77 (3%)
Query: 46 GTHQALGRHKQCKHMDISLRP---FPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQ 102
++ + +P + T + C +C
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSA 188
Query: 103 SFYSKADLVRHMKGRHL 119
+S DL H+ L
Sbjct: 189 VLFSPLDLDAHVASHGL 205
Score = 30.6 bits (68), Expect = 0.51
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHLLT 145
+ CH+C+ F L H+ +
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVAS 202
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+ + C+ C + F S L+ H K HTGE+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.97
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + L +H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.013
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C +C + F ++ L+ H + H+G++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 26.3 bits (59), Expect = 1.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C ++F + L H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.013
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P C C + F S L H + HTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 27.1 bits (61), Expect = 0.66
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF + L+ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.013
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F S LA H + HTGE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.73
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG + C C ++F + L RH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 31.8 bits (73), Expect = 0.014
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
+ TG++ C C ++F L+RH + H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 29.1 bits (66), Expect = 0.14
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHV-KTHTGERDVTC 97
+P+ C C + F+ + L H HTGE+
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 24.8 bits (55), Expect = 4.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 124 FTCHLCNKGFFRKSYLKVHLLTIH 147
+ C C K F + + L H H
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYH 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.014
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ CD+C + F + + L H + H+GE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.64
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C ++F A L +H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 31.7 bits (73), Expect = 0.015
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F +HL H + HTGE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.35
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F L++H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 31.6 bits (72), Expect = 0.015
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGER 93
+ C + C + + SHL H++ HTGER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.8 bits (57), Expect = 1.8
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 122 RSFTCHL--CNKGFFRKSYLKVHLLT 145
+ CH+ C K + + S+L+ HL
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRW 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.016
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+ + C C + F L H + H+GE+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.068
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF L++H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.016
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C +C + F SHL H H+GER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 26.7 bits (60), Expect = 1.00
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C +C ++F + LV+H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.8 bits (73), Expect = 0.016
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F + S H + HTG+R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 27.2 bits (61), Expect = 0.78
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F + +H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.016
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F+ + L H HTGE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.28
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C + F + DL H
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.017
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F S LA H + HTGE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.95
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F + L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 31.0 bits (70), Expect = 0.019
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGER 93
F C C +RF+ HL H+ H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.022
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C+ C + F++ S L H + HTGE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F + L H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.024
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F S L H HTGE+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 27.1 bits (61), Expect = 0.71
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TG + C C ++F + L H
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.025
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C + F +HL H + HTG R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 25.9 bits (58), Expect = 1.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ C C ++F+ L H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.026
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C+ C + F S+L H HTGE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 26.3 bits (59), Expect = 1.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C ++F + ++L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.0 bits (71), Expect = 0.030
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
+P+ C C + F S L H + H+GE+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.40
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ TGE+ C C +SF + L++H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.040
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ CD C + F S L H + H GE+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 27.9 bits (63), Expect = 0.40
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRH 113
+ +GE+ TC C ++F + L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 25.2 bits (56), Expect = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 122 RSFTCHLCNKGFFRKSYLKVH 142
+S TC C K F S L++H
Sbjct: 11 KSHTCDECGKNFCYISALRIH 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.042
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHL 119
LR + + +R + S H GE+ + Q + DL + L
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 27.1 bits (59), Expect = 4.3
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 7 LDYWNKNYFFFLMGLK--LEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMD 61
L W + + H G+K Q ++ + + L +
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 27.1 bits (59), Expect = 5.3
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 57 CKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+++ + + EQ N L + +
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 29.7 bits (66), Expect = 0.057
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
++P+ C C+++F + L HV+ HTGE+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 29.3 bits (65), Expect = 0.11
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHT 90
+PF C C QRF N+ HLA H H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.12
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 34 KSFQCDECDMSFGTHQALGRHK 55
+S+ C C F + QALG H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHM 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.13
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P+ C C K++L H++ HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.15
Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 53/188 (28%)
Query: 7 LDYWNKNYFFFLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRP 66
++ K + + LE + + + AL H+ +
Sbjct: 417 VEKQPKESTISIPSIYLELKV---------KLEN-------EYAL--HRSIVDHYNIPKT 458
Query: 67 FPCDLCEQRFLNK---SHLAYHVKT--HTGERDVTCGLCFQSFYSKADL------VRHMK 115
F D +L++ SH+ +H+K H + F+ + D +RH
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-----FRMVF--LDFRFLEQKIRH-D 510
Query: 116 GRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEA---------QNAIHRCYACRC 166
N + + F K Y+ + P E +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDN------DPKYERLVNAILDFLPKIEENLICSKY 564
Query: 167 AGHCLQIG 174
L+I
Sbjct: 565 T-DLLRIA 571
Score = 31.0 bits (69), Expect = 0.34
Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 51/222 (22%)
Query: 5 FILDYWNKNYFFFLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALGRHKQC-KHMDIS 63
F+ + NY F + +K E + ++ D + +Q ++ +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 64 LRPFPCDLCEQR-----FLN------KSHLAYHVKTHTGERDVTCGLCFQSFY------- 105
LR L E R ++ K+ +A V V C + F+ F+
Sbjct: 140 LRQ---ALLELRPAKNVLIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCN 193
Query: 106 SKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEAQNAIHRCYACR 165
S ++ ++ I + H I Q + R +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSD-----------HSSNI-KLRIHSIQAELRRLLKSK 241
Query: 166 CAGHCLQIGTHSGGICGSMWRVETWHP----CH-LLTERNRQ 202
+CL + + + + W+ C LLT R +Q
Sbjct: 242 PYENCLLVLLN-------VQNAKAWNAFNLSCKILLTTRFKQ 276
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.15
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT 90
+P+ CD+C +R+ N+ L+YH H+
Sbjct: 6 KPYACDICGKRYKNRPGLSYH-YAHS 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.7 bits (61), Expect = 0.34
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+P+ C+ C +RF+ S LA H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.39
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 95 VTCGLC-FQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
V+C C + L +HM + FTCH C K + +K H++ H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHM--ENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 27.9 bits (61), Expect = 0.91
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 30 VHGDKSFQCDECD-MSFGTHQALGRH-KQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVK 87
+ S C C + T + L +H + CK F C C ++ + + + YHV
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-----EMFTCHHCGKQLRSLAGMKYHVM 83
Query: 88 T 88
Sbjct: 84 A 84
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 27.4 bits (60), Expect = 0.42
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKT 88
F C C +RF+ L+ H+KT
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.4 bits (60), Expect = 0.43
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMK 115
+G+R C +C +F +KA+ RH+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 26.6 bits (58), Expect = 0.86
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT 90
RPF C +C F K++ A H+K HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.55
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 63 SLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
S + F C+ C + F K L H++ HT E+
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 120 NIRSFTCHLCNKGFFRKSYLKVHL 143
+ + FTC CNK F K L+ HL
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHL 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 0.67
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+P C +C + F S L HV+ HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.2 bits (59), Expect = 0.67
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 63 SLRPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
S +PF C LCE +KS+L H+ H+ E+
Sbjct: 6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 0.96
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 LRPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+RP+ C +C +RF K + H + HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQ 56
+K F+C++C+ +F + L +H++
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 26.3 bits (57), Expect = 1.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT 90
+ F C+ CE+ F +L H + HT
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHT 36
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.9 bits (56), Expect = 1.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+PF C LC QR + S + H++TH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.4 bits (58), Expect = 1.4
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGER 93
+ F C C + F + ++ H++TH +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.6 bits (63), Expect = 2.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 120 NIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
N S+ C++CN F S L HL + H
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDH 140
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.1 bits (54), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTH 89
+ C LCE+ F+ KS L+ H + H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 23.6 bits (50), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 97 CGLCFQSFYSKADLVRHMK 115
CGLC +SF K+ L RH +
Sbjct: 4 CGLCERSFVEKSALSRHQR 22
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 25.2 bits (54), Expect = 3.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHMDIS 63
G+ +F C+ECD F +L RH H D S
Sbjct: 7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKS 38
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 25.5 bits (56), Expect = 6.8
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 19/55 (34%)
Query: 116 GRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEAQNAIHRCYACRCAGHC 170
G H TC C KGFFR++ Q +H Y+C+ G C
Sbjct: 13 GYHYRC--ITCEGC-KGFFRRT----------------IQKNLHPSYSCKYEGKC 48
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 23.8 bits (51), Expect = 7.8
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHT 90
RP+ CD C++ F+ L H K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.484
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,491,360
Number of extensions: 190096
Number of successful extensions: 1498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1262
Number of HSP's successfully gapped: 585
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.9 bits)