RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14799
(230 letters)
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.1 bits (92), Expect = 9e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
R F C++C + F + HL H ++HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.2 bits (61), Expect = 0.15
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHLLT 145
RSF C +C + F R+ +LK H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 38.0 bits (89), Expect = 3e-05
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+P+ C C + F S L H + HTGE
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 30.7 bits (70), Expect = 0.009
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMK 115
H+GE+ C C ++F + LV+H +
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 26.8 bits (60), Expect = 0.21
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHK 55
G+K + C EC +F L +H+
Sbjct: 4 GEKPYGCVECGKAFSRSSILVQHQ 27
Score = 26.8 bits (60), Expect = 0.27
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 118 HLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
H + + C C K F R S L H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 37.3 bits (87), Expect = 4e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGER 93
+ F C C +RF+ HL+ H+KTH ++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.0 bits (55), Expect = 1.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 124 FTCHLCNKGFFRKSYLKVHLLT 145
F C C K F R +L H+ T
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.0 bits (85), Expect = 1e-04
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+ +PC C + F +KS H+ H G R CG+C + F K LV HMK
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 36.2 bits (83), Expect = 2e-04
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 33 DKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTH 89
DK + C +C SF RH RP+ C +C ++F K HL H+K H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGL---RPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 32.0 bits (72), Expect = 0.006
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 100 CFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
C +SF K+ RHM +R + C +C K F K +L H+
Sbjct: 8 CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 23.5 bits (50), Expect = 7.3
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 23 LEAHITTVHGDKSFQCDECDMSFGTHQALGRHK 55
+ H++ G + + C C F L H
Sbjct: 18 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 36.5 bits (85), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVK-THTGERDVTC 97
+P+ C C + F HL H+K HT ER C
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 31.5 bits (72), Expect = 0.006
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 33 DKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDL 71
K + C C F L H + H RP C +
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQV 39
Score = 30.7 bits (70), Expect = 0.012
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 122 RSFTCHLCNKGFFRKSYLKVHLLTIH 147
+ + C C KGF R +L H+ +H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 29.6 bits (67), Expect = 0.033
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 90 TGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHL 128
+ + C C + F L H+K H + R C +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 35.4 bits (82), Expect = 2e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGER 93
RPF C C +RF L H +THTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.4 bits (51), Expect = 3.7
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 122 RSFTCHL--CNKGFFRKSYLKVHLLT 145
R F C C K F R L+ H T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.9 bits (81), Expect = 3e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+PF C +C + F HL H++THTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 25.6 bits (57), Expect = 0.50
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 122 RSFTCHLCNKGFFRKSYLKVH 142
+ F C +C + F R +L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH 22
Score = 23.0 bits (50), Expect = 4.7
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 KSFQCDECDMSFGTHQALGRHK 55
K FQC C +F L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 35.1 bits (81), Expect = 3e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
R + CD C + F + S L+ H +THTGE
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 32.4 bits (74), Expect = 0.003
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 83 AYHVKTHTGERDVTCGLCFQSFYSKADLVRHMK 115
R C C +SF +DL +H +
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 24.0 bits (52), Expect = 2.6
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 112 RHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
R + R + C C K F S L H T
Sbjct: 2 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 24.0 bits (52), Expect = 3.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 26 HITTVHGDKSFQCDECDMSFGTHQALGRHK 55
+ ++CDEC SF L +H+
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.3 bits (79), Expect = 6e-04
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+P+ C C++ F K L H K +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 32.7 bits (75), Expect = 0.002
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMK 115
+THTGE+ C C ++F K L H K
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFK 29
Score = 26.9 bits (60), Expect = 0.26
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 118 HLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
H + + C C+K F +K L +H H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 26.6 bits (59), Expect = 0.36
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKH 59
G+K + C CD +F Q L H + H
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFKRYH 32
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 34.2 bits (78), Expect = 6e-04
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+P+ C +C RF K ++YHV++H G
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.5 bits (77), Expect = 0.001
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTGE 92
+P C C + + +L H+++HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 23.4 bits (51), Expect = 4.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 122 RSFTCH--LCNKGFFRKSYLKVHLLT 145
+ C C K + R LK HL +
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 87 KTHTGERDVTCGLCFQSFYSKADLVRHMKGRH 118
+TH+GE+ C +C F + H+ +H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 31.1 bits (71), Expect = 0.007
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 118 HLNIRSFTCHLCNKGFFRKSYLKVHLLTIH 147
H + + C++C+ F + +K+H+L H
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 31.1 bits (71), Expect = 0.008
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
+P+ C +C RF + H+ E
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 30.3 bits (69), Expect = 0.014
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKH 59
G+K ++C C F + H KH
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHILQKH 32
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.4 bits (74), Expect = 0.003
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 85 HVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNI 121
+ TG + C C +SF L H K RH+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHMLV 37
Score = 28.9 bits (65), Expect = 0.047
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTG 91
+PF C C++ F HLA H K H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 24.3 bits (53), Expect = 2.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 118 HLNIRSFTCHLCNKGFFRKSYLKVHLLTIHM 148
I+ F C C++ F R +L +H HM
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALH-RKRHM 35
Score = 23.2 bits (50), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCKHM 60
G K FQC +CD SF L H + +HM
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALH-RKRHM 35
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.4 bits (74), Expect = 0.003
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 68 PCDLCEQRFLNKSHLAYHVKTHTGERDVTC 97
P C + F K HL H+K H+ RD C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 23.1 bits (50), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 123 SFTCH--LCNKGFFRKSYLKVHLLT 145
SF+C C K F K +LK H+
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKL 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.9 bits (73), Expect = 0.003
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTGE 92
RP+ CD C++ F+ L H K+H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 22.3 bits (48), Expect = 9.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 122 RSFTCH--LCNKGFFRKSYLKVHLLT 145
R ++C C+K F R L H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.2 bits (71), Expect = 0.006
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTGE 92
+PF C C +RF +L HV+ HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 22.3 bits (48), Expect = 9.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 122 RSFTCH--LCNKGFFRKSYLKVHLLT 145
+ F C C K F L+ H+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRI 26
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 30.8 bits (69), Expect = 0.009
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
RPF C +C N S L H+++HTG+
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTGD 29
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 30.8 bits (70), Expect = 0.009
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 65 RPFPCD--LCEQRFLNKSHLAYHVKTHTG 91
RP+ C C++RF + L H++ HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 22.7 bits (49), Expect = 7.2
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 122 RSFTCH--LCNKGFFRKSYLKVH 142
R + C C++ F R + L H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 30.8 bits (70), Expect = 0.011
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 34 KSFQCDECDMSFGTHQALGRHKQC 57
+S+ C C F + QALG H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNV 27
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 30.0 bits (67), Expect = 0.016
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHTGE 92
+PFPC CE+ F + HL H THTGE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 30.2 bits (68), Expect = 0.018
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHT 90
+PF C C QRF N+ HLA H H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.2 bits (66), Expect = 0.032
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 65 RPFPCDL--CEQRFLNKSHLAYHVKTHT 90
RP+ C C ++F ++L H+ TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 23.5 bits (51), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 122 RSFTCHL--CNKGFFRKSYLKVHLLT 145
R + C CNK F + + LK H+LT
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 29.1 bits (66), Expect = 0.033
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHT 90
+P+ C C + F S L H + HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 23.3 bits (51), Expect = 4.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 122 RSFTCHLCNKGFFRKSYLKVH 142
+ + C C K F + S L H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 29.0 bits (65), Expect = 0.042
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
RPF C +C F K++ A H+K HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 28.6 bits (64), Expect = 0.061
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 89 HTGERDVTCGLCFQSFYSKADLVRHMK 115
+G+R C +C +F +KA+ RH+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 23.9 bits (52), Expect = 2.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHK 55
G + F C C +F T RH
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHL 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 28.0 bits (62), Expect = 0.14
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 65 RPFPCDLCE--QRFLNKSHLAYHVKTHTGER 93
+ F C + F + ++ H++TH +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.0 bits (59), Expect = 0.24
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGER 93
C C ++FL+K +L H + HTGE+
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 22.7 bits (48), Expect = 5.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 126 CHLCNKGFFRKSYLKVH 142
C C+K F K YLKVH
Sbjct: 3 CPTCHKKFLSKYYLKVH 19
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (57), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTHTGE 92
F C +C++ F + L H+ +HTGE
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTGE 30
Score = 23.9 bits (51), Expect = 2.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 124 FTCHLCNKGFFRKSYLKVHLLT 145
FTC +C + F R+ L++H+++
Sbjct: 5 FTCSVCQETFRRRMELRLHMVS 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.8 bits (54), Expect = 1.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTH 89
+PF CD+C ++F H K H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.7 bits (53), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 67 FPCDLCEQRFLNKSHLAYHVKTH 89
+ C LCE+ F+ KS L+ H + H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
Score = 23.2 bits (49), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 97 CGLCFQSFYSKADLVRHMK 115
CGLC +SF K+ L RH +
Sbjct: 3 CGLCERSFVEKSALSRHQR 21
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.6 bits (53), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 66 PFPCDLCEQRFLNKSHLAYHVKTHTG 91
P C++C + F K L H++ HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 26.7 bits (59), Expect = 1.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 92 ERDVTCGLCFQSFYSKADLVRHMKGRH 118
+ C C + F S + H K H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>d2g9hd2 d.15.6.1 (D:87-216) Enterotoxin type I {Staphylococcus
aureus [TaxId: 1280]}
Length = 130
Score = 26.8 bits (59), Expect = 1.5
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 70 DLCEQRFLNKSHLAYHVKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLC 129
D+ +R+L + + Y + ++ F S ++K ++ H+ SF+ L
Sbjct: 40 DVKLRRYLQEEYNIYGHNSTGKGKEYGYKSKFYSGFNKGKVLFHLNDEK----SFSYDLF 95
Query: 130 N-KGFFRKSYLKV 141
S+LK+
Sbjct: 96 YTGDGVPVSFLKI 108
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.4 bits (53), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGER 93
C+ C R S L H++THT R
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.3 bits (52), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKT-HTGER 93
+ + C CE R + S+L H+KT H+ E+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 27.1 bits (59), Expect = 2.0
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 109 DLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLTIHMQPADEAQNAIHRCY------ 162
DL I++ C L + K + +VH + P++ + Y
Sbjct: 34 DLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY 93
Query: 163 ----ACRCAGHCLQIGTHSGGICGSMWRVETWHPCHLLTE 198
+ G ++R E + +TE
Sbjct: 94 LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTE 133
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 25.1 bits (55), Expect = 2.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 108 ADLVRHMKGRHLN 120
A +V +MK RH
Sbjct: 14 AKIVNYMKTRHQR 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 3.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 69 CDLCEQRFLNKSHLAYHVKTHTGER 93
C++C + F + HL H +H+GE+
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEK 32
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.9 bits (52), Expect = 6.1
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 32 GDKSFQCDECDMSFGTHQALGRHKQCK 58
G +C C F L H + K
Sbjct: 12 GGGLHRCLACARYFIDSTNLKTHFRSK 38
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.7 bits (48), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 67 FPCDLCEQRFLNKSHLAYHVK 87
+PC C + F K ++ HVK
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVK 22
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 25.3 bits (55), Expect = 7.7
Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 14/178 (7%)
Query: 42 DMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYHVKTHTGERDVTCGLCF 101
D +A + S P D + R + AY + +
Sbjct: 151 DYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210
Query: 102 QSFYSKADLVRHMKGRHLNIRSFTCH--LCNKGFFRKS------YLKVHLLTIHMQP--- 150
+ A V H +R LC + F ++ ++ L +
Sbjct: 211 PNPVPYAHFVTTTT--HKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAV 268
Query: 151 -ADEAQNAIHRCYACRCAGHCLQIGTHSGGICGSMWRVETWHPCHLLTERNRQPPYSQ 207
EA + YA R + ++ + ++ T + L+ R +Q
Sbjct: 269 AFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKT 326
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.7 bits (48), Expect = 8.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 65 RPFPCDLCEQRFLNKSHLAYHVKTHTGE 92
RPF C+ C S+L+ H+K G+
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 24.9 bits (54), Expect = 8.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 10 WNKNYFFFLMGLKLEAHITTVHGDKSFQCDECDMSFGTHQALG----RHKQCKHMD 61
W FL GL++ + T+ D+ D+++GT+ G R +D
Sbjct: 157 WMGRVHRFL-GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLD 211
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 25.0 bits (54), Expect = 9.0
Identities = 18/165 (10%), Positives = 36/165 (21%), Gaps = 6/165 (3%)
Query: 26 HITTVHGDKSFQCDECDMSFGTHQALGRHKQCKHMDISLRPFPCDLCEQRFLNKSHLAYH 85
++ + D A H + S D R + + AY
Sbjct: 152 FFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYL 211
Query: 86 VKTHTGERDVTCGLCFQSFYSKADLVRHMKGRHLNIRSFTCHLCNKGFFRKSYLKVHLLT 145
+ + S + +V H +R + F+R+ V T
Sbjct: 212 MADMAHISGLVVAGVVPSPFEHCHVV--TTTTHKTLRGCRAGMI---FYRRGVRSVDPKT 266
Query: 146 IHMQPADEAQNAIHRCYACRCAGHCLQIGTHSGGICGSMWRVETW 190
+ I+ G + +
Sbjct: 267 GKEILYNLESL-INSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 310
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 24.8 bits (54), Expect = 9.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 97 CGLCFQSFYSKADLVRHMK 115
C C + S+ L +HMK
Sbjct: 34 CEFCLKYMKSRTILQQHMK 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.140 0.484
Gapped
Lambda K H
0.267 0.0385 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,864
Number of extensions: 41883
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 148
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)