BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1480
         (126 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CQA6|CHCH1_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
           OS=Mus musculus GN=Chchd1 PE=3 SV=1
          Length = 118

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 31  PIL----PLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86
           PIL    PL L NRV  +  +  +A CI EMSM  +C K N+F    C KEI+DF  C  
Sbjct: 19  PILKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACRKEIQDFFDC-- 76

Query: 87  LRRSNKYIKKQEFHKKEISIGDKD-LKAWEIDALLKKYP 124
              S++  + ++    + S+G  + L   ++  LL+++P
Sbjct: 77  ---SSRAQEARKMRSIQESLGQSESLSPHKMTKLLQRFP 112


>sp|Q96BP2|CHCH1_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
          OS=Homo sapiens GN=CHCHD1 PE=1 SV=1
          Length = 118

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
          RL ++      V   P  PL L NRV  +  +  +A CI EMS+  +C K N+F    C 
Sbjct: 9  RLARFGNPRKPV-LKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACR 67

Query: 76 KEIKDFIACA 85
          KEI+ F+ CA
Sbjct: 68 KEIQGFLDCA 77


>sp|Q6CF49|COX23_YARLI Cytochrome c oxidase-assembly factor COX23, mitochondrial
           OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
           GN=COX23 PE=3 SV=1
          Length = 164

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 24  ENRVKFDPILPLELKNRVS--GKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDF 81
           + ++K+ P  P  + NRV    K        C +   M+ +CL+ N++ +  C +  + +
Sbjct: 42  DGKLKYGPDDPTAMSNRVQFLAKADSQYYDPCAEASKMSLNCLERNNYKKAMCEEYFQIY 101

Query: 82  IACADLRRSNKYIKKQEFHKKEIS 105
             C  +  SNK    + F  + I+
Sbjct: 102 RDCKKMWVSNKKQSGEIFETENIT 125


>sp|B1I6L7|ATPD_DESAP ATP synthase subunit delta OS=Desulforudis audaxviator (strain
           MP104C) GN=atpH PE=3 SV=1
          Length = 182

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 11  MRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFV 70
           +R F RL+  S+D  +V ++P +P+ELK  +  +    + +G     ++ F CL  +   
Sbjct: 31  LRGFMRLLDESRDLQQVLYNPQVPVELKKEIVREAFGKELSGT----TLNFLCLVLDRRR 86

Query: 71  QTNCAKEIKDFIACADLRRS 90
           +         FIA A+  R+
Sbjct: 87  EVYLKGIADHFIALANETRN 106


>sp|Q1RI52|MURD_RICBR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rickettsia
           bellii (strain RML369-C) GN=murD PE=3 SV=1
          Length = 450

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 45  GGDSKKAGCIQEMSMAFSCLKANDFVQ------TNCAKEIKDFIACADLRRS 90
           GG +K+ G I+E+   FS +K   F         N AK+I DF+ C DL+++
Sbjct: 349 GGIAKEGG-IEEIKPYFSKIKKAYFYGQAKEMFANTAKDIIDFVICDDLKQA 399


>sp|Q95LL2|XRRA1_MACFA X-ray radiation resistance-associated protein 1 (Fragment)
          OS=Macaca fascicularis GN=XRRA1 PE=2 SV=2
          Length = 587

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 2  KLDNP-CLSAMRNFRRLIKYSKDENRVKFDPIL 33
          +L NP C +++   RRL K S DENR+   P L
Sbjct: 34 RLSNPSCFASLAGLRRLKKLSLDENRIIRIPYL 66


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,905,984
Number of Sequences: 539616
Number of extensions: 1751858
Number of successful extensions: 3575
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3569
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)