Query psy1480
Match_columns 126
No_of_seqs 87 out of 89
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:11:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4695|consensus 100.0 2.8E-36 6E-41 221.9 9.7 110 14-126 8-118 (122)
2 PF06747 CHCH: CHCH domain; I 98.7 1.2E-08 2.5E-13 59.5 3.3 34 53-86 1-34 (35)
3 PF08991 DUF1903: Domain of un 96.8 0.0019 4E-08 43.8 3.7 42 51-92 2-43 (67)
4 KOG4149|consensus 95.3 0.034 7.5E-07 42.2 4.7 46 49-94 66-113 (129)
5 KOG4618|consensus 94.5 0.17 3.6E-06 35.2 5.9 48 50-97 21-68 (74)
6 KOG3477|consensus 91.2 0.3 6.5E-06 35.3 3.5 36 50-85 27-62 (97)
7 PF08583 Cmc1: Cytochrome c ox 90.4 0.88 1.9E-05 29.2 4.9 44 51-94 11-55 (69)
8 KOG4138|consensus 86.0 1.8 3.9E-05 31.3 4.5 52 50-102 40-91 (96)
9 KOG4090|consensus 75.5 5.2 0.00011 31.4 4.2 38 50-87 115-152 (157)
10 PF07956 DUF1690: Protein of U 74.3 4.4 9.6E-05 30.7 3.5 34 52-85 108-141 (142)
11 PF07802 GCK: GCK domain; Int 72.6 11 0.00023 26.2 4.8 39 50-88 11-54 (76)
12 PF05051 COX17: Cytochrome C o 69.8 16 0.00035 23.6 4.8 35 52-88 11-45 (49)
13 PF10200 Ndufs5: NADH:ubiquino 60.9 61 0.0013 23.4 6.9 44 45-88 25-70 (96)
14 KOG4083|consensus 59.2 14 0.0003 29.9 3.7 41 49-89 144-184 (192)
15 PLN03079 Uncharacterized prote 58.0 38 0.00082 24.4 5.4 47 46-92 11-65 (91)
16 KOG4624|consensus 57.4 26 0.00056 25.9 4.5 42 51-92 31-73 (104)
17 smart00511 ORANGE Orange domai 46.4 51 0.0011 19.7 4.0 35 51-87 8-42 (45)
18 PF02297 COX6B: Cytochrome oxi 43.8 25 0.00055 23.6 2.5 40 50-89 9-58 (76)
19 cd00926 Cyt_c_Oxidase_VIb Cyto 41.4 62 0.0013 22.0 4.2 39 50-88 20-59 (75)
20 PF05254 UPF0203: Uncharacteri 40.9 36 0.00077 22.9 2.9 22 69-90 33-54 (68)
21 KOG3458|consensus 35.2 39 0.00083 26.8 2.7 38 51-88 76-114 (170)
22 PF07527 Hairy_orange: Hairy O 35.0 1E+02 0.0022 18.3 4.5 34 52-87 9-42 (43)
23 PF05676 NDUF_B7: NADH-ubiquin 32.5 42 0.00091 22.6 2.2 36 51-86 20-55 (66)
24 PF02320 UCR_hinge: Ubiquinol- 29.1 31 0.00067 23.0 1.1 15 49-63 37-51 (65)
25 KOG3481|consensus 27.4 1.4E+02 0.0031 21.4 4.3 33 57-89 20-57 (87)
26 KOG4114|consensus 26.7 1.5E+02 0.0032 20.6 4.1 35 62-96 31-67 (73)
27 KOG4110|consensus 23.5 2.6E+02 0.0056 21.1 5.2 36 53-88 36-73 (120)
28 PF11326 DUF3128: Protein of u 23.3 1.5E+02 0.0032 20.1 3.7 41 50-90 4-52 (84)
29 PF06648 DUF1160: Protein of u 23.1 2E+02 0.0044 21.5 4.7 57 62-123 24-80 (122)
30 PF11126 Phage_DsbA: Transcrip 23.0 1.7E+02 0.0036 20.1 3.8 33 85-123 12-44 (69)
31 PF13097 CENP-U: CENP-A nucleo 22.8 2.1E+02 0.0046 22.8 4.9 42 53-94 102-149 (175)
32 KOG0192|consensus 22.7 1.1E+02 0.0023 26.3 3.5 64 26-89 243-308 (362)
33 PF13174 TPR_6: Tetratricopept 22.7 75 0.0016 16.3 1.7 12 114-125 21-32 (33)
34 PF10203 Pet191_N: Cytochrome 22.1 58 0.0013 21.9 1.4 20 70-89 40-59 (68)
35 KOG3496|consensus 21.4 1.2E+02 0.0027 21.0 2.9 21 69-89 49-69 (72)
36 PF08095 Toxin_25: Hefutoxin f 20.7 62 0.0013 17.6 1.1 15 61-76 6-20 (22)
37 PF02845 CUE: CUE domain; Int 20.0 1E+02 0.0022 18.0 2.1 14 113-126 2-15 (42)
No 1
>KOG4695|consensus
Probab=100.00 E-value=2.8e-36 Score=221.87 Aligned_cols=110 Identities=33% Similarity=0.571 Sum_probs=99.9
Q ss_pred HHHhhcccCCCCCCCCCcccccccccccc-CCCCCCCCCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy1480 14 FRRLIKYSKDENRVKFDPILPLELKNRVS-GKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNK 92 (126)
Q Consensus 14 ~~~~~r~p~~~~~vpfke~lPL~Lk~~V~-gk~~k~~~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~ 92 (126)
|.+.+|.|++|+++||+|||||+|||||. |++++.++++|++||++||+|||+|+|+|++|.+||+.|++|+..+.+++
T Consensus 8 l~~r~~a~g~pk~~vf~eilPL~lkNrv~~g~~~~gs~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~~~ya~ea 87 (122)
T KOG4695|consen 8 LRGRLAAFGNPKKPVFKEILPLILKNRVGEGRREKGSEATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCAARYAQEA 87 (122)
T ss_pred HHHHHhccCCCCCCccccchhHHHhhhhccccCCcccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999876 89999999999999999999999999999999999999999999977777
Q ss_pred HHHHHhhcccccccCCCCCCHHHHHHHHhhCCCC
Q psy1480 93 YIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL 126 (126)
Q Consensus 93 ~~~k~~~~~g~l~~G~~~Lt~kQiN~LLkryP~~ 126 (126)
.+++... |++++|+ +|++.+.|+++++|||.
T Consensus 88 ~~~r~~~--gtlgesg-sl~~~~~nk~~~~fp~~ 118 (122)
T KOG4695|consen 88 RKMRSIQ--ETLGESG-SLLPNKLNKLLQRFPNK 118 (122)
T ss_pred HHHHHhH--hhhCCcc-ccCHHHHhhhhhcCCCC
Confidence 6666444 8886664 89999999999999983
No 2
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=98.73 E-value=1.2e-08 Score=59.52 Aligned_cols=34 Identities=38% Similarity=0.799 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q psy1480 53 CIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86 (126)
Q Consensus 53 C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~ 86 (126)
|.+||..+|+||+.|+++.+.|.+++++|.+|+.
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~ 34 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRM 34 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence 8999999999999999999999999999999974
No 3
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=96.78 E-value=0.0019 Score=43.76 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNK 92 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~ 92 (126)
.||..|=-.+..|+..|+|+.+.|.+.|++|..|-...+..+
T Consensus 2 ~PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck~~y~~~ 43 (67)
T PF08991_consen 2 DPCQKEACAIQKCLQRNNYDESKCQDYIDALYECCKKFYEQR 43 (67)
T ss_dssp -TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHTTS----
T ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 489999999999999999999999999999999998886433
No 4
>KOG4149|consensus
Probab=95.33 E-value=0.034 Score=42.16 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy1480 49 KKAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRRSNKYI 94 (126)
Q Consensus 49 ~~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~~~~~~ 94 (126)
...||..|.-..|+|++.++ -....|.++..+++.||+++.....+
T Consensus 66 ~a~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~qk~p~~~~e 113 (129)
T KOG4149|consen 66 VAGPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQKYPREEEE 113 (129)
T ss_pred ccCccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHHhCchHHHH
Confidence 35799999999999999997 56789999999999999999844433
No 5
>KOG4618|consensus
Probab=94.46 E-value=0.17 Score=35.17 Aligned_cols=48 Identities=19% Similarity=0.550 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQ 97 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~ 97 (126)
-.||..|=++-|-|+..|+||-++|...-..+.+|-..-.+.+.+++.
T Consensus 21 ~nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCKkfwn~ar~errk 68 (74)
T KOG4618|consen 21 YNPCLLESSASFKCLEENNYDRSKCQDYFDVYKECKKFWNEARLERRK 68 (74)
T ss_pred CChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 389999999999999999999999999999999998887766665543
No 6
>KOG3477|consensus
Probab=91.21 E-value=0.3 Score=35.33 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACA 85 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~ 85 (126)
...|..||.-.|.|++....+...|.-..+.+..|-
T Consensus 27 ~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCR 62 (97)
T KOG3477|consen 27 LGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCR 62 (97)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999993
No 7
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=90.35 E-value=0.88 Score=29.22 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHhhCCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDF-VQTNCAKEIKDFIACADLRRSNKYI 94 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f-~d~~Cakei~~f~~C~~~~~~~~~~ 94 (126)
..|..++..|..|-+...+ ....|.++..+++.|+..+..+...
T Consensus 11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl~~~~~~~~~ 55 (69)
T PF08583_consen 11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECLKEERNDERF 55 (69)
T ss_pred HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHHHHHHhhHHH
Confidence 6799999999999999664 5689999999999999988765544
No 8
>KOG4138|consensus
Probab=85.97 E-value=1.8 Score=31.34 Aligned_cols=52 Identities=17% Similarity=0.384 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKK 102 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~~~g 102 (126)
...|..|=.+|=-|.++. .|=-+|..++++|..|++++...+.+-.....++
T Consensus 40 k~GC~~ehlalq~C~a~t-~DWRqC~~qm~~FrkCwek~~g~r~~~s~~~~~~ 91 (96)
T KOG4138|consen 40 KSGCAAEHLALQECMAQT-QDWRQCQPQMQAFRKCWEKQQGRRQEESQRRQEQ 91 (96)
T ss_pred ccchHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHcCCchHHHHHhhhc
Confidence 368999999999999987 4567899999999999999887776655554443
No 9
>KOG4090|consensus
Probab=75.47 E-value=5.2 Score=31.37 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADL 87 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~ 87 (126)
.-+|..|.-.|+.|...++-|-+.|.-..+.|..|-..
T Consensus 115 ~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~ 152 (157)
T KOG4090|consen 115 QQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQCKKN 152 (157)
T ss_pred cCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999643
No 10
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=74.32 E-value=4.4 Score=30.74 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q psy1480 52 GCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACA 85 (126)
Q Consensus 52 ~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~ 85 (126)
.|-.-=+.+..|++.|+-.--.|-+|+.+|..|+
T Consensus 108 ~v~~aR~~vv~CL~~N~~rPLnCw~EVe~FKk~V 141 (142)
T PF07956_consen 108 EVEKARSAVVRCLRENDGRPLNCWEEVEAFKKEV 141 (142)
T ss_pred hhHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHh
Confidence 4555567899999999999999999999999987
No 11
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=72.60 E-value=11 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHhhC----C-CCchhhHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKAN----D-FVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N----~-f~d~~Cakei~~f~~C~~~~ 88 (126)
..+|-....+...|+... + -....|......|..||...
T Consensus 11 gG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ah 54 (76)
T PF07802_consen 11 GGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAH 54 (76)
T ss_pred CCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhc
Confidence 378999999999999433 3 45579999999999999863
No 12
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=69.78 E-value=16 Score=23.57 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHH
Q psy1480 52 GCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 52 ~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~ 88 (126)
.|-.|=.+==.|+-.|+-++ |..+|.++..||..+
T Consensus 11 aCpetK~aRDeC~l~~g~e~--C~~~Ieahk~Cmr~~ 45 (49)
T PF05051_consen 11 ACPETKKARDECILFNGEED--CKELIEAHKACMRGE 45 (49)
T ss_dssp TSHHHHHHHHHHHHHC-CCC--CHHHHHHHHHHHHHH
T ss_pred cChhHHHHhHhhHHhcChHH--HHHHHHHHHHHHHHc
Confidence 56777777778998988777 999999999999876
No 13
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=60.89 E-value=61 Score=23.42 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHH
Q psy1480 45 GGDSKKAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 45 ~~k~~~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~ 88 (126)
-.-...+-|-.-=..++.|....+ -....|.-+..+|..|+...
T Consensus 25 q~~~~~~RC~~FE~e~i~C~~~~G~~r~kKeC~~e~EDy~EClh~~ 70 (96)
T PF10200_consen 25 QPYKQPSRCHPFEKEWIECAEAYGQTRGKKECKLELEDYYECLHHT 70 (96)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcccchhhhchhHHhHHHHHHhhH
Confidence 334456789765567889998876 35789999999999998644
No 14
>KOG4083|consensus
Probab=59.24 E-value=14 Score=29.87 Aligned_cols=41 Identities=20% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480 49 KKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 49 ~~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~ 89 (126)
.+.+|..==+-+|.|+..|-.....|+.+...|+.|+....
T Consensus 144 ~~pvCqdlq~qil~Cyr~~p~e~LkC~~lv~af~~Cv~~~r 184 (192)
T KOG4083|consen 144 REPVCQDLQAQILRCYRENPGEVLKCSPLVAAFMKCVSLAR 184 (192)
T ss_pred cCCcccccHHHHHHHHhcCCCccccccHHHHHHHHHHHHHH
Confidence 36788888889999999999999999999999999998764
No 15
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=57.99 E-value=38 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=37.6
Q ss_pred CCCCCCChHHHHHHHHHHHhhCC--------CCchhhHHHHHHHHHHHHHHHHHH
Q psy1480 46 GDSKKAGCIQEMSMAFSCLKAND--------FVQTNCAKEIKDFIACADLRRSNK 92 (126)
Q Consensus 46 ~k~~~~~C~~EMs~llaCwk~N~--------f~d~~Cakei~~f~~C~~~~~~~~ 92 (126)
.+....+|...=...=+||-.+= .++..|+.+-..++.|+..+..++
T Consensus 11 ~~~~g~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~ek 65 (91)
T PLN03079 11 SRSSTSPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLEDK 65 (91)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHc
Confidence 34556789999999999987653 467899999999999999887443
No 16
>KOG4624|consensus
Probab=57.37 E-value=26 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHhhCCC-CchhhHHHHHHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDF-VQTNCAKEIKDFIACADLRRSNK 92 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f-~d~~Cakei~~f~~C~~~~~~~~ 92 (126)
.-|..+.+.|-.|.+.+.+ .-.-|-++...|..|.-.++.+.
T Consensus 31 ~~C~~~v~~~a~C~k~~~v~vv~TCrkq~~elk~Cl~~~~~D~ 73 (104)
T KOG4624|consen 31 EKCSEFVQDFADCAKASGVSVVPTCRKQNSELKECLTQYYNDE 73 (104)
T ss_pred HHHHHHHHHHHHHHhcCCeeeehhhHHHHHHHHHHHHHHhcCH
Confidence 6799999999999999996 45679999999999987665544
No 17
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=46.40 E-value=51 Score=19.69 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADL 87 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~ 87 (126)
..|+.|.+-+|+-. .+.++..+.+.+.-|+.|++.
T Consensus 8 ~~C~~Ev~~fLs~~--~~~~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 8 RECANEVSRFLSQL--PGTDPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred HHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHh
Confidence 46999999999833 335678899999999998764
No 18
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=43.75 E-value=25 Score=23.55 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHhhCCC---------CchhhHHHHHHHHH-HHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDF---------VQTNCAKEIKDFIA-CADLRR 89 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f---------~d~~Cakei~~f~~-C~~~~~ 89 (126)
...|-.-=..++.|+..++- +.+.|..+...|.. |...-.
T Consensus 9 r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~sWv 58 (76)
T PF02297_consen 9 RKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSSWV 58 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHHHH
Confidence 35677888889999999998 89999999999955 976554
No 19
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=41.39 E-value=62 Score=22.02 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHH-HHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIA-CADLR 88 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~-C~~~~ 88 (126)
..-|-+==..++.|+..++-+.+.|..+...|.. |...-
T Consensus 20 ~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~~W 59 (75)
T cd00926 20 TKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEW 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcHHH
Confidence 4679999999999999999999999999999974 65443
No 20
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=40.86 E-value=36 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=19.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q psy1480 69 FVQTNCAKEIKDFIACADLRRS 90 (126)
Q Consensus 69 f~d~~Cakei~~f~~C~~~~~~ 90 (126)
..+..|..+-+.++.|++.+..
T Consensus 33 ~~~~~C~~~~~~Y~~Cv~~al~ 54 (68)
T PF05254_consen 33 SSDNECGELFKEYQQCVQKALK 54 (68)
T ss_pred CCCCcHHHHHHHHHHHHHHHHH
Confidence 5668999999999999998863
No 21
>KOG3458|consensus
Probab=35.22 E-value=39 Score=26.79 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHhhCC-CCchhhHHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKAND-FVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~-f~d~~Cakei~~f~~C~~~~ 88 (126)
..|..||...-.|+-... ..-+.|.++-..|..|+..-
T Consensus 76 r~C~~e~~~y~~C~dysst~~f~~Crk~Q~~fdkcv~~k 114 (170)
T KOG3458|consen 76 RSCLEEFTKYATCMDYSSTNEFSHCRKEQEAFDKCVPDK 114 (170)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhh
Confidence 468899999999988774 44578999999999997544
No 22
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=35.04 E-value=1e+02 Score=18.33 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Q psy1480 52 GCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADL 87 (126)
Q Consensus 52 ~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~ 87 (126)
.|+.|.+-+| ....+.++..++..+.-|+.|+..
T Consensus 9 ~C~~Ev~~fL--~~~~~~~~~~~~rLl~HL~~~~~~ 42 (43)
T PF07527_consen 9 ECLNEVSRFL--SSVEGVDPGVRARLLSHLQSCLNQ 42 (43)
T ss_dssp HHHHHHHHHH--HHTS---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCCChHHHHHHHHHHHHHhcC
Confidence 5899999988 444556788999999999988753
No 23
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=32.49 E-value=42 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~ 86 (126)
.-|..=+.-+..|..++-+..-.|..+..++..|--
T Consensus 20 DyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y 55 (66)
T PF05676_consen 20 DYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQY 55 (66)
T ss_pred hhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccH
Confidence 458899999999999999888999999999999963
No 24
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=29.12 E-value=31 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=7.0
Q ss_pred CCCChHHHHHHHHHH
Q psy1480 49 KKAGCIQEMSMAFSC 63 (126)
Q Consensus 49 ~~~~C~~EMs~llaC 63 (126)
++..|+.|+.=++.|
T Consensus 37 ~~e~C~ee~fd~~hC 51 (65)
T PF02320_consen 37 TKEDCVEEYFDLVHC 51 (65)
T ss_dssp SSG-SHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 344555555555544
No 25
>KOG3481|consensus
Probab=27.38 E-value=1.4e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCC-----CCchhhHHHHHHHHHHHHHHH
Q psy1480 57 MSMAFSCLKAND-----FVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 57 Ms~llaCwk~N~-----f~d~~Cakei~~f~~C~~~~~ 89 (126)
-..=|+||=+.- .+..+|..+-..+..|++++.
T Consensus 20 YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal 57 (87)
T KOG3481|consen 20 YDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL 57 (87)
T ss_pred HHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence 345577786644 688999999999999998886
No 26
>KOG4114|consensus
Probab=26.67 E-value=1.5e+02 Score=20.63 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHhhCCC--CchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1480 62 SCLKANDF--VQTNCAKEIKDFIACADLRRSNKYIKK 96 (126)
Q Consensus 62 aCwk~N~f--~d~~Cakei~~f~~C~~~~~~~~~~~k 96 (126)
-|+..++- .-..|...+++|.+|-...-+-++..+
T Consensus 31 eCldn~~~~~vPeeC~al~~af~dCKRslvDmrkRfr 67 (73)
T KOG4114|consen 31 ECLDNPELKDVPEECIALMKAFLDCKRSLVDMRKRFR 67 (73)
T ss_pred HHhcCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36666664 667899999999999888776666555
No 27
>KOG4110|consensus
Probab=23.54 E-value=2.6e+02 Score=21.07 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHH
Q psy1480 53 CIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 53 C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~ 88 (126)
|..==+-++-|...-+ .-...|+-|+.+|+.|+--+
T Consensus 36 cg~FE~e~~eC~eayG~~~g~keC~ie~~dFqECv~~q 73 (120)
T KOG4110|consen 36 CGKFEKEWMECAEAYGLERGEKECAIEYDDFQECVLMQ 73 (120)
T ss_pred ccHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 6554456889998887 57889999999999996433
No 28
>PF11326 DUF3128: Protein of unknown function (DUF3128); InterPro: IPR021475 This eukaryotic family of proteins has no known function.
Probab=23.31 E-value=1.5e+02 Score=20.10 Aligned_cols=41 Identities=15% Similarity=0.473 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHhhCC-------C-CchhhHHHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKAND-------F-VQTNCAKEIKDFIACADLRRS 90 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~-------f-~d~~Cakei~~f~~C~~~~~~ 90 (126)
.-.|+.=+..++.|..--+ + ....|.+..++|..|+.....
T Consensus 4 ~~sC~~~fd~~~~C~S~~~q~~~yYryG~~~~C~~~~~df~~C~~~k~~ 52 (84)
T PF11326_consen 4 TMSCMDAFDELWFCYSPGGQFRNYYRYGEFDDCSQWWEDFKFCLRWKSK 52 (84)
T ss_pred CccHHHHHHHHHHcCCchHhheeeeecCCCccHHHHHHHHHHHHHhccC
Confidence 4679999999999987655 1 447899999999999987664
No 29
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=23.13 E-value=2e+02 Score=21.49 Aligned_cols=57 Identities=19% Similarity=-0.018 Sum_probs=42.0
Q ss_pred HHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHhhC
Q psy1480 62 SCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKY 123 (126)
Q Consensus 62 aCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~~~g~l~~G~~~Lt~kQiN~LLkry 123 (126)
.++++-+-++.-|.|.++-|..=.+..-.....+..-+. ..|. .||.+||++|-.++
T Consensus 24 ~ylkel~~d~tf~~Kl~~Il~mFl~~eid~e~~y~l~~~----~d~~-~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 24 KYLKELERDETFLDKLIKILKMFLNDEIDVEDMYNLFGA----VDGL-KLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhCCCCHHHHHHHHhc----ccHh-hcCHHHHHHHHHHH
Confidence 467777788899999999888887777766666654422 1444 79999999987654
No 30
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=22.97 E-value=1.7e+02 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHhhC
Q psy1480 85 ADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKY 123 (126)
Q Consensus 85 ~~~~~~~~~~~k~~~~~g~l~~G~~~Lt~kQiN~LLkry 123 (126)
++.+.+.-++.+..++... | +..+.+|+||+.|
T Consensus 12 ie~~~e~IKdik~~AK~El---G---v~gk~Fnkl~~ly 44 (69)
T PF11126_consen 12 IESYNEMIKDIKDRAKDEL---G---VDGKMFNKLLKLY 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHc---C---CCHHHHHHHHHHH
Confidence 3444444444444444333 3 5568999999877
No 31
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=22.83 E-value=2.1e+02 Score=22.78 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhCC------CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy1480 53 CIQEMSMAFSCLKAND------FVQTNCAKEIKDFIACADLRRSNKYI 94 (126)
Q Consensus 53 C~~EMs~llaCwk~N~------f~d~~Cakei~~f~~C~~~~~~~~~~ 94 (126)
=++|+-+.|+++...- .+...|-+.|..|+.=+..+...+..
T Consensus 102 DItELDVvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~ 149 (175)
T PF13097_consen 102 DITELDVVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIK 149 (175)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998753 68899999999999988877655543
No 32
>KOG0192|consensus
Probab=22.71 E-value=1.1e+02 Score=26.28 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccCCCCCCC-CCChHHHHHHHH-HHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480 26 RVKFDPILPLELKNRVSGKGGDSK-KAGCIQEMSMAF-SCLKANDFVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 26 ~vpfke~lPL~Lk~~V~gk~~k~~-~~~C~~EMs~ll-aCwk~N~f~d~~Cakei~~f~~C~~~~~ 89 (126)
.+||..+-|+.+...|.-.+.+.. ...|-.+|..++ .||..+-..----..-+..|..++....
T Consensus 243 ~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~ 308 (362)
T KOG0192|consen 243 EIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHIS 308 (362)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence 589999999988888873333333 555999998876 4998877554444555555555554443
No 33
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.66 E-value=75 Score=16.27 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.0
Q ss_pred HHHHHHHhhCCC
Q psy1480 114 WEIDALLKKYPR 125 (126)
Q Consensus 114 kQiN~LLkryP~ 125 (126)
..+..++.+||+
T Consensus 21 ~~~~~~~~~~P~ 32 (33)
T PF13174_consen 21 EYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHCcC
Confidence 467778888885
No 34
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=22.13 E-value=58 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q psy1480 70 VQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 70 ~d~~Cakei~~f~~C~~~~~ 89 (126)
....|.....+|+.|=...-
T Consensus 40 ~p~eC~~lr~~f~eCKrg~l 59 (68)
T PF10203_consen 40 LPEECQQLRKAFFECKRGML 59 (68)
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 45688888888888865554
No 35
>KOG3496|consensus
Probab=21.40 E-value=1.2e+02 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.5
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q psy1480 69 FVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 69 f~d~~Cakei~~f~~C~~~~~ 89 (126)
.....|.+.|.+...||..+.
T Consensus 49 ~gee~C~~lIEahk~CMr~~G 69 (72)
T KOG3496|consen 49 NGEEKCGKLIEAHKECMRAYG 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999998763
No 36
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=20.65 E-value=62 Score=17.64 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=8.9
Q ss_pred HHHHhhCCCCchhhHH
Q psy1480 61 FSCLKANDFVQTNCAK 76 (126)
Q Consensus 61 laCwk~N~f~d~~Cak 76 (126)
=+||+.- .|+.-|.+
T Consensus 6 rscwk~g-~deetck~ 20 (22)
T PF08095_consen 6 RSCWKAG-HDEETCKE 20 (22)
T ss_dssp THHHHHH-S-TTHHHH
T ss_pred HHHHHcc-CcHHHHHh
Confidence 3789874 45666654
No 37
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=20.05 E-value=1e+02 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=8.0
Q ss_pred HHHHHHHHhhCCCC
Q psy1480 113 AWEIDALLKKYPRL 126 (126)
Q Consensus 113 ~kQiN~LLkryP~~ 126 (126)
..+|..|...||++
T Consensus 2 ~~~v~~L~~mFP~~ 15 (42)
T PF02845_consen 2 EEMVQQLQEMFPDL 15 (42)
T ss_dssp HHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHCCCC
Confidence 34566666666653
Done!