Query psy1480
Match_columns 126
No_of_seqs 87 out of 89
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:11:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 97.1 0.0009 3.1E-08 39.8 4.7 36 51-86 1-36 (38)
2 1hp8_A HU-P8; leukemia, cystei 96.8 0.0022 7.6E-08 42.8 5.0 40 50-89 4-43 (68)
3 2lqt_A Coiled-coil-helix-coile 95.9 0.025 8.4E-07 39.2 6.5 62 42-107 5-66 (85)
4 2k3j_A Mitochondrial intermemb 95.3 0.028 9.5E-07 42.4 5.3 41 50-90 65-107 (146)
5 2lql_A Coiled-coil-helix-coile 94.2 0.024 8.1E-07 40.6 2.5 40 50-89 58-97 (113)
6 2zxt_A Maltose-binding peripla 92.0 0.19 6.5E-06 41.3 4.9 41 49-89 403-445 (465)
7 1u96_A Cytochrome C oxidase co 75.4 3 0.0001 27.7 3.5 38 51-88 24-61 (69)
8 2db7_A Hairy/enhancer-OF-split 62.5 12 0.00041 24.0 4.2 37 51-87 25-61 (64)
9 2lql_A Coiled-coil-helix-coile 52.3 11 0.00038 26.5 3.0 37 51-87 13-50 (113)
10 1dul_A Signal recognition part 31.4 20 0.00069 23.3 1.5 13 111-123 47-59 (69)
11 2l0y_B HCG2020266, COX17 cytoc 22.7 18 0.00063 23.8 0.1 35 53-89 30-64 (67)
12 3ezq_A Tumor necrosis factor r 21.9 1.6E+02 0.0053 20.7 4.8 47 53-99 48-94 (115)
13 1qb2_A SRP54, human signal rec 21.6 37 0.0013 23.7 1.5 13 111-123 87-99 (109)
14 1wgl_A TOLL-interacting protei 20.7 80 0.0027 19.6 2.8 21 106-126 3-23 (59)
15 1hq1_A Signal recognition part 20.5 35 0.0012 23.7 1.2 13 111-123 81-93 (105)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=97.09 E-value=0.0009 Score=39.82 Aligned_cols=36 Identities=25% Similarity=0.657 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~ 86 (126)
.||-.+.-++..|+..|+++.+.|...+.+|+.|=+
T Consensus 1 dpC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 1 DPCQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp CCSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999964
No 2
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=96.78 E-value=0.0022 Score=42.81 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~ 89 (126)
..||-.+.-++..|+..|+|+.+.|...+++|+.|-....
T Consensus 4 ~dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~~ 43 (68)
T 1hp8_A 4 KDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYP 43 (68)
T ss_dssp CCTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSC
T ss_pred CCchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999999999999999999999987654
No 3
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=95.92 E-value=0.025 Score=39.23 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=45.3
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q psy1480 42 SGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIG 107 (126)
Q Consensus 42 ~gk~~k~~~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~~~g~l~~G 107 (126)
.+|-+..-..||..|=.+=+.|+-.|++|-+.|.....++.+|-..-. ..+++...+|+. |.
T Consensus 5 ~~r~r~~d~nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~W~---~v~~eRRr~Gi~-P~ 66 (85)
T 2lqt_A 5 TQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWN---SIVMQRRKNGVK-PF 66 (85)
T ss_dssp ---------CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHH---HHHHHHHTTCCS-CS
T ss_pred cccccCCCCCccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCC-CC
Confidence 334333335899999999999999999999999999999999976655 555666677774 44
No 4
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=95.30 E-value=0.028 Score=42.39 Aligned_cols=41 Identities=17% Similarity=0.492 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRRS 90 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~~ 90 (126)
..||..|.-..|+||..++ -.-..|.++-.+|+.||..+.+
T Consensus 65 ~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~ 107 (146)
T 2k3j_A 65 SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPD 107 (146)
T ss_dssp SSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSS
T ss_pred CCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChH
Confidence 4699999999999996655 4578999999999999998873
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=94.24 E-value=0.024 Score=40.56 Aligned_cols=40 Identities=28% Similarity=0.659 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480 50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~ 89 (126)
...|..||.+.-.|+..|+.+-..|.++...|..|++...
T Consensus 58 ~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~ 97 (113)
T 2lql_A 58 RQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQ 97 (113)
T ss_dssp HHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC-
T ss_pred HHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999999999996543
No 6
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=91.99 E-value=0.19 Score=41.30 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHH
Q psy1480 49 KKAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 49 ~~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~ 89 (126)
...+|..|.-..|+|+..++ ...+.|.++-.+|++||..+.
T Consensus 403 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 445 (465)
T 2zxt_A 403 AHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYP 445 (465)
T ss_dssp TSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCT
T ss_pred CCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCH
Confidence 35699999999999999777 566899999999999999887
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=75.43 E-value=3 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLR 88 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~ 88 (126)
=.|-.|=.+==.|+-.++-++..|..+|.++..||..+
T Consensus 24 CaCpetK~aRDeCil~~gee~~~C~~lIeahk~CMr~~ 61 (69)
T 1u96_A 24 CVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMKGY 61 (69)
T ss_dssp TTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHHHTT
T ss_pred eeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 45778888888999999988889999999999999765
No 8
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=62.48 E-value=12 Score=24.02 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADL 87 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~ 87 (126)
..|+.|.+-+|+..-.-+-.|..+.+.+.-|..|+..
T Consensus 25 ~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~ 61 (64)
T 2db7_A 25 RECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61 (64)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhc
Confidence 4699999999998776666677999999999999864
No 9
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=52.28 E-value=11 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHHhhCCC-CchhhHHHHHHHHHHHHH
Q psy1480 51 AGCIQEMSMAFSCLKANDF-VQTNCAKEIKDFIACADL 87 (126)
Q Consensus 51 ~~C~~EMs~llaCwk~N~f-~d~~Cakei~~f~~C~~~ 87 (126)
.-|-.|+..+|-|-..|+- +...|.+|-..+..|+..
T Consensus 13 k~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~ 50 (113)
T 2lql_A 13 RYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSS 50 (113)
T ss_dssp -CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHT
T ss_pred HHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhc
Confidence 4599999999999988764 456788888888888753
No 10
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=31.36 E-value=20 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=12.2
Q ss_pred CCHHHHHHHHhhC
Q psy1480 111 LKAWEIDALLKKY 123 (126)
Q Consensus 111 Lt~kQiN~LLkry 123 (126)
.+..+||.||+.|
T Consensus 47 ~~v~eVn~Llkqf 59 (69)
T 1dul_A 47 MQVQDVNRLLKQF 59 (69)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8999999999987
No 11
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=22.72 E-value=18 Score=23.75 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480 53 CIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR 89 (126)
Q Consensus 53 C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~ 89 (126)
|-.|=.+==.|+-.++ +..|.+.|.++..||..+.
T Consensus 30 CpetK~aRDeCil~~g--ee~C~~lIeahk~Cmr~~G 64 (67)
T 2l0y_B 30 CPETKKARDACIIEKG--EEHCGHLIEAHKESMRALG 64 (67)
T ss_dssp -------------------CCSCSSHHHHHHHHHHHH
T ss_pred CcchhhHhHHHHHhcC--HHHHHHHHHHHHHHHHHcC
Confidence 3444444444555444 4499999999999998764
No 12
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=21.89 E-value=1.6e+02 Score=20.71 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1480 53 CIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEF 99 (126)
Q Consensus 53 C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~ 99 (126)
+...---||-.|.+..-.+..+...+++|..|--...+++.+.+...
T Consensus 48 ~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~l~~~Ad~Iq~~l~~ 94 (115)
T 3ezq_A 48 TAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILK 94 (115)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 45666789999999999999999999999999888887777766554
No 13
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=21.65 E-value=37 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.642 Sum_probs=12.2
Q ss_pred CCHHHHHHHHhhC
Q psy1480 111 LKAWEIDALLKKY 123 (126)
Q Consensus 111 Lt~kQiN~LLkry 123 (126)
.+..+||.||+.|
T Consensus 87 ~~v~eVn~LLkqf 99 (109)
T 1qb2_A 87 VSTRDVQELLTQY 99 (109)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8999999999987
No 14
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.66 E-value=80 Score=19.55 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=16.2
Q ss_pred cCCCCCCHHHHHHHHhhCCCC
Q psy1480 106 IGDKDLKAWEIDALLKKYPRL 126 (126)
Q Consensus 106 ~G~~~Lt~kQiN~LLkryP~~ 126 (126)
+|....+..++..|...||++
T Consensus 3 ~~~~~~~ee~l~~L~emFP~l 23 (59)
T 1wgl_A 3 SGSSGCSEEDLKAIQDMFPNM 23 (59)
T ss_dssp SCSSSSCHHHHHHHHHHCSSS
T ss_pred CCCCCCCHHHHHHHHHHCCCC
Confidence 344467888899999999975
No 15
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=20.50 E-value=35 Score=23.69 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=12.2
Q ss_pred CCHHHHHHHHhhC
Q psy1480 111 LKAWEIDALLKKY 123 (126)
Q Consensus 111 Lt~kQiN~LLkry 123 (126)
.+..+||.||+.|
T Consensus 81 ~~v~eVn~LLkqf 93 (105)
T 1hq1_A 81 MQVQDVNRLLKQF 93 (105)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8999999999987
Done!