RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1480
(126 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.14
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 39/136 (28%)
Query: 15 RRLI-KYSKDENRVKFDPILPLELKNRVSGKGGDS----------KKAGCIQEMSMAFSC 63
R ++ Y+ + D I P D K + M++ F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL----------DQYFYSHIGHHLKNIEHPERMTL-FRM 495
Query: 64 LKAN-DFVQTNCAKEIKDFIAC----------ADLRRSNKYIKKQE--FHKKEISIGDKD 110
+ + F++ K D A L+ YI + + + +I D
Sbjct: 496 VFLDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-F 551
Query: 111 LKAWEIDALLKKYPRL 126
L E + + KY L
Sbjct: 552 LPKIEENLICSKYTDL 567
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 29.3 bits (66), Expect = 0.28
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 81 FIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALL 120
+ CAD R+ ++ K EI+ G + + +DA +
Sbjct: 77 LLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGI 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 29.1 bits (66), Expect = 0.35
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 32 ILP---LELKNRVSGKGGDSKK------AGCIQEMSMAFSCLKANDFVQTN-----CAKE 77
I+P EL+ R+ G+ D + G E+S + D+V N A
Sbjct: 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAY----DYVIVNEDIEETADR 201
Query: 78 IKDFIACADLRRSNKYIKKQEFHKKEISIGD 108
I + + ++ + + +E + I D
Sbjct: 202 ISNILRAEQMKTC-RQVGLRELLESRFPIED 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.50
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 95 KKQEFHKKEISIGDKDLKAWEIDALLKKYPRL 126
+KQ K + S LK + D+ P L
Sbjct: 18 EKQALKKLQAS-----LKLYADDSA----PAL 40
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.5 bits (62), Expect = 0.89
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 32 ILP---LELKNRVSGKGGDSKK------AGCIQEMSMAFSCLKANDFVQTN-----CAKE 77
ILP +EL R+ G+G DS++ A + EMS D++ N +
Sbjct: 135 ILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY----AEYDYLIVNDDFDTALTD 190
Query: 78 IKDFIACADLRRSNKYIKKQEFHKKEIS 105
+K I LR S + + K ++
Sbjct: 191 LKTIIRAERLRMSRQKQRHDALISKLLA 218
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 27.4 bits (61), Expect = 1.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 81 FIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALL 120
F+ CADL R + +++ H E+ + IDA L
Sbjct: 77 FVFCADLYRHQQLAEEKGEHISELLENTEMFMVSLIDAAL 116
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 26.7 bits (60), Expect = 1.8
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 32 ILP---LELKNRVSGKGGDSKKAGCIQE-MSMAFSCLKA---------NDFVQTNCAKEI 78
ILP L+ R+ + D I++ +++A + ND + +
Sbjct: 124 ILPPSIEALRERLIKRRQDDTAI--IEQRLALAREEMAHYKEFDYLVVNDNFD-QAVQNL 180
Query: 79 KDFIACADLRRSNKYIKKQEFHKK 102
I+ L+R + K +
Sbjct: 181 IHIISAERLQRDVQEKKLSRLLAE 204
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 26.4 bits (59), Expect = 2.4
Identities = 9/68 (13%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 36 ELKNRVSGKGGDSKKAGCIQE-MS-----MAFSCLKANDFVQTN-----CAKEIKDFIAC 84
L +R+ + ++++ IQ+ M + + L + N +++K+++
Sbjct: 150 VLLSRLLTRNTENQEQ--IQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLN 207
Query: 85 ADLRRSNK 92
+ + +N
Sbjct: 208 SYIHLNNH 215
>3rdw_A Putative arsenate reductase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 2.20A {Yersinia pestis}
Length = 121
Score = 25.3 bits (56), Expect = 4.7
Identities = 7/52 (13%), Positives = 24/52 (46%)
Query: 75 AKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL 126
++K+ + + + ++ +E K +++ D+ L ++ + P+L
Sbjct: 44 VDKLKELLQQLGFSDARQLMRTKEDLYKTLNLDDRGLTQDQLLQAMADNPKL 95
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Length = 1158
Score = 25.7 bits (55), Expect = 5.2
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 70 VQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAW 114
+ K DFI DL RS + + I W
Sbjct: 927 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 971
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,897,573
Number of extensions: 99735
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 19
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)