BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14801
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AKCEF N GS+KDR + RMIEDAE G LKPG TI+EP+SGNTGIGLA+ AA++GY
Sbjct: 64 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 123
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ALGA+I+RT + +D PE + A R+ +++ N+ +LDQ+RN
Sbjct: 124 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 183
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
+NPL+HY+TTA+EIL+ GK+DM+V RK+KEKCP C+++G DP GSI
Sbjct: 184 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 243
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
LA+P+ LN Q +Y EVEGIGY F T LDR V+D+W K D++ F AR LI EG
Sbjct: 244 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 300
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
LL GGS+G+ + VA +AA+ L+ QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L
Sbjct: 301 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDL 359
Query: 342 EE 343
E
Sbjct: 360 TE 361
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 314 DGVRNYLTKFISDEWMIEKGFLDEAEELEEMI----------HSGTAMHVACQAAKSLRP 363
D + L + + D+W K +EA M+ +G+ + VA +AA+ L+
Sbjct: 266 DFIPTVLDRTVVDKWF--KSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE 323
Query: 364 DQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L E
Sbjct: 324 GQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDLTE 361
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AKCEF N GS+KDR + RMIEDAE G LKPG TI+EP+SGNTGIGLA+ AA++GY
Sbjct: 129 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 188
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ALGA+I+RT + +D PE + A R+ +++ N+ +LDQ+RN
Sbjct: 189 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 248
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
+NPL+HY+TTA+EIL+ GK+DM+V RK+KEKCP C+++G DP GSI
Sbjct: 249 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 308
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
LA+P+ LN Q +Y EVEGIGY F T LDR V+D+W K D++ F AR LI EG
Sbjct: 309 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 365
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
LL GGS+G+ + VA +AA+ L+ QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L
Sbjct: 366 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDL 424
Query: 342 EE 343
E
Sbjct: 425 TE 426
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 314 DGVRNYLTKFISDEWMIEKGFLDEAEELEEMI----------HSGTAMHVACQAAKSLRP 363
D + L + + D+W K +EA M+ +G+ + VA +AA+ L+
Sbjct: 331 DFIPTVLDRTVVDKWF--KSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE 388
Query: 364 DQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L E
Sbjct: 389 GQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDLTE 426
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/347 (48%), Positives = 215/347 (61%), Gaps = 14/347 (4%)
Query: 3 EKS--LYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTD-------AKCEFMNPTGSL 53
EKS ++ A TP + + P K +I P +D AKCEF+NP GS+
Sbjct: 35 EKSPHIHRGIAHRQQITPNILEVIGCTPLVKLNNI--PASDGIECEMYAKCEFLNPGGSV 92
Query: 54 KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXX 113
KDR +RM++DAE G+LKPGYTI+EP+SGNTGIGLAM A+KGY
Sbjct: 93 KDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKV 152
Query: 114 YTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173
++ LGAKIIRT + +YD PEG+I A ++ + N++VLDQ+RN NPL+HY+ TA
Sbjct: 153 SALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAA 212
Query: 174 EILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPE 233
EIL KVDMIV+ RKIKE+ PSC++VG DP+GSILA+P LN +
Sbjct: 213 EILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELN---K 269
Query: 234 NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293
+ + EVEGIGY F T D V+D W K GD D F M+RRL EGLL GGSSG AMH
Sbjct: 270 TDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMH 329
Query: 294 VACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
A + A+ L+ QRCVVIL DG+RNY+TKF+SD WM + F + E
Sbjct: 330 AALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 311 ILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVI 370
+ D V + TK + L+ E L SG AMH A + A+ L+ QRCVVI
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVI 347
Query: 371 LADGVRNYLTKFISDEWMIEKGFLDEAEE 399
L DG+RNY+TKF+SD WM + F + E
Sbjct: 348 LPDGIRNYMTKFVSDNWMEARNFKEPVNE 376
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 155/303 (51%), Gaps = 16/303 (5%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G+ PL+ + + AK EF NP S+KDR M++ AE AG++KP I+EP+
Sbjct: 15 GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 74
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAMV A +GY ++A GA++I T D G IA
Sbjct: 75 SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 131
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXR 201
A +A + V QF NP NP H TTAEE+ RDT GKVD++V +
Sbjct: 132 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 191
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
IKE+ PS + V +P S + + Q + ++GIG F LD++++D+
Sbjct: 192 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
G++D +ARRL + EGLLVG SSG A A Q A+ RP+ + VV+L D
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 301
Query: 319 YLT 321
YL+
Sbjct: 302 YLS 304
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 154/303 (50%), Gaps = 16/303 (5%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G+ PL+ + + AK EF NP S+ DR M++ AE AG++KP I+EP+
Sbjct: 15 GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIKPDTIILEPT 74
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAMV A +GY ++A GA++I T D G IA
Sbjct: 75 SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 131
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXR 201
A +A + V QF NP NP H TTAEE+ RDT GKVD++V +
Sbjct: 132 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 191
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
IKE+ PS + V +P S + + Q + ++GIG F LD++++D+
Sbjct: 192 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
G++D +ARRL + EGLLVG SSG A A Q A+ RP+ + VV+L D
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 301
Query: 319 YLT 321
YL+
Sbjct: 302 YLS 304
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 155/305 (50%), Gaps = 20/305 (6%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG--YTIVE 79
GK P++ +K + K E +NP GS+KDR AW MI+DAE G+L+PG IVE
Sbjct: 8 GKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVE 67
Query: 80 PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
P+SGNTGIGLAM+AA +GY +KA GA+++ T PE +
Sbjct: 68 PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTD-------PERRM 120
Query: 140 AGAHRIASQMK---NAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXX 196
A A ++K A + DQF+NP N +HYETT E+ G++D V
Sbjct: 121 LAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTI 180
Query: 197 XXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
R +KE+ P K++ +P S N + ++ + +G+G F LD +
Sbjct: 181 TGVGRYLKERIPHVKVIAVEPARS--------NVLSGGKMGQHGFQGMGPGFIPENLDLS 232
Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV 316
++D + ++D F +ARRL + EGL +G SSG + A Q A+ L P +R I DG
Sbjct: 233 LLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGG 292
Query: 317 RNYLT 321
YL+
Sbjct: 293 WKYLS 297
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 144/286 (50%), Gaps = 16/286 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AK E NP GS+KDR MI+ AE AG++KP I+EP+SGNTGI LAMV+A +GY
Sbjct: 36 AKLESFNPAGSIKDRIGVAMIDAAEKAGLIKPDTIILEPTSGNTGIALAMVSAARGYKCV 95
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++A GA+++ T + G IA A +A + QF NP
Sbjct: 96 LTMPDTMSIERRMLLRAYGAELVLTPGAEGM---AGAIAKAEELAKTDDRYFIPQQFENP 152
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
NP H TTAEE+ RDT GKVD+ V + IK++ PS + V +P S
Sbjct: 153 ANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASP 212
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
+ + Q + ++GIG F LD ++D+ G+ D +ARR+ EG
Sbjct: 213 V--------LSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEG 264
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFI 324
LLVG SSG A+ A + A RP+ + VV+L D YL+ +
Sbjct: 265 LLVGISSGAAVWAARELAH--RPENAGKLIVVVLPDFGERYLSTVL 308
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 143/286 (50%), Gaps = 16/286 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AK E NP GS+KDR MI+ AE AG++KP I+EP+SGNTGI LAMV+A +GY
Sbjct: 36 AKLESFNPAGSIKDRIGVAMIDAAEKAGLIKPDTIILEPTSGNTGIALAMVSAARGYKCV 95
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++A GA+++ T + G IA A +A + QF NP
Sbjct: 96 LTMPDTMSIERRMLLRAYGAELVLTPGAEGM---AGAIAKAEELAKTDDRYFIPQQFENP 152
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
NP H TTAEE+ RDT GKVD+ V + IK++ PS + V +P S
Sbjct: 153 ANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASP 212
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
+ + Q + ++GIG F LD ++D+ G+ D +ARR+ EG
Sbjct: 213 V--------LSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEG 264
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFI 324
LL G SSG A+ A + A RP+ + VV+L D YL+ +
Sbjct: 265 LLFGISSGAAVWAARELAH--RPENAGKLIVVVLPDFGERYLSTVL 308
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 17/289 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
AK E M P S+KDR + MI DAE G++KPG ++ +EP+SGNTG+GLA AA KGY
Sbjct: 34 AKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 93
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
+ A G +++ T K +G IA A I ++ N +L QF N
Sbjct: 94 IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 150
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
P NP HYETT EI + TGGK+D V + +KE+ + KL G +P S
Sbjct: 151 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 210
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ + + ++++GIG F + L+ ++ID+ + ++ MAR+L E
Sbjct: 211 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 262
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
GLLVG SSG A A + A+ RP+ + V I YL+ + D
Sbjct: 263 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 309
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 17/289 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
AK E M P S+KDR + MI DAE G++KPG ++ +EP+SGNTG+GLA AA KGY
Sbjct: 32 AKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 91
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
+ A G +++ T K +G IA A I ++ N +L QF N
Sbjct: 92 IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 148
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
P NP HYETT EI + TGGK+D V + +KE+ + KL G +P S
Sbjct: 149 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 208
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ + + ++++GIG F + L+ ++ID+ + ++ MAR+L E
Sbjct: 209 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 260
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
GLLVG SSG A A + A+ RP+ + V I YL+ + D
Sbjct: 261 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 307
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 145/289 (50%), Gaps = 17/289 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
AK E M P S+ DR + MI DAE G++KPG ++ +EP+SGNTG+GLA AA KGY
Sbjct: 34 AKLEMMEPCSSVADRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 93
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
+ A G +++ T K +G IA A I ++ N +L QF N
Sbjct: 94 IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 150
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
P NP HYETT EI + TGGK+D V + +KE+ + KL G +P S
Sbjct: 151 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 210
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ + + ++++GIG F + L+ ++ID+ + ++ MAR+L E
Sbjct: 211 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 262
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
GLLVG SSG A A + A+ RP+ + V I YL+ + D
Sbjct: 263 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 309
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 141/285 (49%), Gaps = 14/285 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
GK P++ + + AK E M P S+KDR + M+ DAE G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181
Query: 81 SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGNTGIGLA +AA +GY +KA GA+++ T K G +
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMT---GAVQ 238
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
A I +A +L QF NP NP HYETT EI DT GKVD+ V
Sbjct: 239 KAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVG 298
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
R IKEK P +++G +P S + + + ++++GIG F LD+ ++D+
Sbjct: 299 RFIKEKNPKTQVIGVEPTES--------DILSGGKPGPHKIQGIGAGFIPKNLDQKIMDE 350
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD 305
++ A++L EGL+VG SSG A A + AK RP+
Sbjct: 351 VIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPE 393
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 12/280 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
G+ PL+ +K K E M PT S+KDR A+ MI DAE ++ PG T++EP
Sbjct: 34 GRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEP 93
Query: 81 SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGN GI +A +AA+KGY TM+A GA++I T K G +
Sbjct: 94 TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMG---GTVK 150
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
A+ + NA +L QF NP N H+ETT EI DT G+VD+ V+
Sbjct: 151 KAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVG 210
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
+ +K K P+ K+ G +P S N + + + + G G F LD +V+++
Sbjct: 211 QYLKSKNPNVKIYGVEPSES--------NVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300
+ +D MAR L EGL+VG SSG A + A+
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ 302
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 12/280 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
G+ PL+ +K K E M PT S+ DR A+ MI DAE ++ PG T++EP
Sbjct: 34 GRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEP 93
Query: 81 SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGN GI +A +AA+KGY TM+A GA++I T K G +
Sbjct: 94 TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMG---GTVK 150
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
A+ + NA +L QF NP N H+ETT EI DT G+VD+ V+
Sbjct: 151 KAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVG 210
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
+ +K K P+ K+ G +P S N + + + + G G F LD +V+++
Sbjct: 211 QYLKSKNPNVKIYGVEPSES--------NVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300
+ +D MAR L EGL+VG SSG A + A+
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ 302
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 157/319 (49%), Gaps = 20/319 (6%)
Query: 22 GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G PL+ ++ G IL AK E NP+ S+K R MI DAE GVLKPG +VE
Sbjct: 12 GHTPLVRLNRIGNGRIL-----AKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66
Query: 80 PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
P++GNTGI LA VAA +GY +KALGA ++ T+ K +G I
Sbjct: 67 PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM---KGAI 123
Query: 140 AGAHRI-ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A I AS + ++L QF NP NP H +TT EI DT G+VD+ +
Sbjct: 124 QKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTG 183
Query: 199 XXRKIKEKCPSCKL--VGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
R IK L V +P S ++AQ + ++ + ++++GIG F LD
Sbjct: 184 VTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI---KPGPHKIQGIGAGFIPGNLDL 240
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVA--CQAAKSLRPDQRCVVILA 313
+ID+ +++ ARRL++ EG+L G SSG A+ A Q +S ++ VVIL
Sbjct: 241 KLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFT-NKNIVVILP 299
Query: 314 DGVRNYLTKFISDEWMIEK 332
YL+ + + EK
Sbjct: 300 SSGERYLSTALFADLFTEK 318
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 15/280 (5%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
K E NP GS+KDR A MI DAE G+LK G IVEP+SGN GI +AM+ A +G+
Sbjct: 36 KLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVIL 93
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
+K LGA+++ T + +G + A I S+ A +L+QF NP
Sbjct: 94 TMPETMSVERRKVLKMLGAELVLTPGELGM---KGAVEKALEI-SRETGAHMLNQFENPY 149
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPS-CKLVGADPFGSI 221
N SH TT EIL+ ++D V R +K + K+V +P
Sbjct: 150 NVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP---- 205
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
A+ L+ Q + ++GIG F LDR+VID+ D++ + MAR L K EG
Sbjct: 206 -AKSPVLSG---GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEG 261
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
LLVG SSG + A + A+ L PD R V + D YL+
Sbjct: 262 LLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 334 FLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
+L + E L I SG + A + A+ L PD R V + D YL+
Sbjct: 255 YLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 15/280 (5%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
K E NP GS+KDR A MI DAE G+LK G IVEP+SGN GI +AM+ A +G+
Sbjct: 24 KLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVIL 81
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
+K LGA+++ T + +G + A I S+ A +L+QF NP
Sbjct: 82 TMPETMSVERRKVLKMLGAELVLTPGELGM---KGAVEKALEI-SRETGAHMLNQFENPY 137
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPS-CKLVGADPFGSI 221
N SH TT EIL+ ++D V R +K + K+V +P
Sbjct: 138 NVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP---- 193
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
A+ L+ Q + ++GIG F LDR+VID+ D++ + MAR L K EG
Sbjct: 194 -AKSPVLSG---GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEG 249
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
LLVG SSG + A + A+ L PD R V + D YL+
Sbjct: 250 LLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 334 FLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
+L + E L I SG + A + A+ L PD R V + D YL+
Sbjct: 243 YLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 289
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 156/319 (48%), Gaps = 20/319 (6%)
Query: 22 GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G PL+ ++ G IL AK E NP+ S+ R MI DAE GVLKPG +VE
Sbjct: 12 GHTPLVRLNRIGNGRIL-----AKVESRNPSFSVACRIGANMIWDAEKRGVLKPGVELVE 66
Query: 80 PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
P++GNTGI LA VAA +GY +KALGA ++ T+ K +G I
Sbjct: 67 PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM---KGAI 123
Query: 140 AGAHRI-ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A I AS + ++L QF NP NP H +TT EI DT G+VD+ +
Sbjct: 124 QKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTG 183
Query: 199 XXRKIKEKCPSCKL--VGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
R IK L V +P S ++AQ + ++ + ++++GIG F LD
Sbjct: 184 VTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI---KPGPHKIQGIGAGFIPGNLDL 240
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVA--CQAAKSLRPDQRCVVILA 313
+ID+ +++ ARRL++ EG+L G SSG A+ A Q +S ++ VVIL
Sbjct: 241 KLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFT-NKNIVVILP 299
Query: 314 DGVRNYLTKFISDEWMIEK 332
YL+ + + EK
Sbjct: 300 SSGERYLSTALFADLFTEK 318
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 138/279 (49%), Gaps = 12/279 (4%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
K EFMNP S+KDR A MIE AE AG LKPG TIVEP+SGNTGIGLAMVAA KGY
Sbjct: 34 KLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVL 93
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
++A GA+++ T + G IA A + + + QF+N
Sbjct: 94 VMPDTMSLERRNLLRAYGAELVLTPGAQGM---RGAIAKAEELVRE-HGYFMPQQFKNEA 149
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSIL 222
NP H TT +EI+ G ++D V + ++E P+ K+ +P S +
Sbjct: 150 NPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPV 209
Query: 223 AQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGL 282
+ + ++++GIG F LD ++ D ++ F ARR + EG+
Sbjct: 210 --------LSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGI 261
Query: 283 LVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
L G SSG A+H A + AK L ++ + I+ YL+
Sbjct: 262 LGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 146/315 (46%), Gaps = 26/315 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + G K E NP GS+KDRAA MI +AE G +KPG ++E +
Sbjct: 9 GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAM+AA+KGY M+A GA++I ++ + G
Sbjct: 69 SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A +A +M N +LDQF NP+NP +HY TT EI + TGG++ V
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
R ++E+ +VG QP+ + +P I E + F A+ +D V+
Sbjct: 182 VSRFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
D +D R L EG+ G SSG A+ A + AK+ PD V I+ D
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
YL+ + E +G
Sbjct: 286 YLSTGVFGEEHFSQG 300
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 144/315 (45%), Gaps = 26/315 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + G K E NP GS+ DRAA MI +AE G +KPG ++E +
Sbjct: 9 GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAM+AA+KGY M+A GA++I ++ + G
Sbjct: 69 SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A +A +M N +LDQF NP+NP +HY TT EI + TGG++ V
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
R ++E+ +VG QP+ + +P I E + F A+ +D V+
Sbjct: 182 VSRFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
D +D R L EG+ G SSG A+ A + A + PD V I+ D
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
YL+ + E +G
Sbjct: 286 YLSTGVFGEEHFSQG 300
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 144/315 (45%), Gaps = 26/315 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + G K E NP GS+ DRAA MI +AE G +KPG ++E +
Sbjct: 9 GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDVLIEAT 68
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAM+AA+KGY M+A GA++I ++ + G
Sbjct: 69 SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A +A +M N +LDQF NP+NP +HY TT EI + TGG++ V
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
++E+ +VG QP+ + +P I E + F A+ +D V+
Sbjct: 182 VSEFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
D +D R L EG+ G SSG A+ A + AK+ PD V I+ D
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
YL+ + E +G
Sbjct: 286 YLSTGVFGEEHFSQG 300
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 142/315 (45%), Gaps = 26/315 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + G K E NP GS+KDRAA MI +AE G +KPG ++E +
Sbjct: 9 GNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82 SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAM+AA+KGY M+A GA++I ++ + G
Sbjct: 69 SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIA---SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
A +A S+ +LDQF NP+NP +HY TT EI R T G++ V
Sbjct: 122 ARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
R ++E+ +VG QP+ + +P I E + F A+ +D V+
Sbjct: 182 VSRFLREQEKPVTIVG--------LQPEEGSSIP--GIRRWPAEYMPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
D D R L EG+ G SSG A+ A + A++ P V I+ D
Sbjct: 231 D----IHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVARAT-PGAIVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
YL+ + E +G
Sbjct: 286 YLSTGVFGEEHFSQG 300
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 21/253 (8%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AK E NPTGS+KDR A RMIE AE G+L+PG TI+EP+SGNTGI LAM A +KGY
Sbjct: 41 AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 100
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ GA+II + + + +A A +A+ + V+L Q+ NP
Sbjct: 101 CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 157
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
N SHY T E+L D ++ V R ++E + K+V A+P +G
Sbjct: 158 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ +++++ F D ++ G D R L+ +E
Sbjct: 217 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 260
Query: 281 GLLVGGSSGTAMH 293
G+ G S+G +H
Sbjct: 261 GIFAGISTGAVLH 273
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 24/314 (7%)
Query: 4 KSLYSNSARNSPFTPTVP-GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI 62
K +Y N TP V V P+ K+G+ +L K E+ NP S+KDR + ++
Sbjct: 10 KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRIL----VKLEYFNPMSSVKDRVGFNIV 65
Query: 63 EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAK 122
A G LKPG I+E +SGNTGI L A+ GY MKA GA+
Sbjct: 66 YQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE 125
Query: 123 IIRTQNDKSYDHPEGMIAGAHRIASQMK----NAVVLDQFRNPNNPLSHYETTAEEILRD 178
+I T+ K GM + +K V +QF NP+N +H+ TA EI D
Sbjct: 126 LILTEGKK------GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWED 178
Query: 179 TGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY 238
T G+VD++V K+KEK K++ +P S + + ++
Sbjct: 179 TDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGP-------- 230
Query: 239 NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298
+ ++GIG F + +D+ +D + MAR ++K +G++ G SSG A+ +
Sbjct: 231 HGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE 290
Query: 299 AKSLRPDQRCVVIL 312
A+ + + +VI+
Sbjct: 291 AEKPENEGKTIVII 304
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AK E NPTGS+KDR A RMIE AE G+L+PG TI+EP+SGNTGI LAM A +KGY
Sbjct: 39 AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 98
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ GA+II + + + +A A +A+ + V+L Q+ NP
Sbjct: 99 CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 155
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
N SHY T E+L D ++ V R ++E + +V A+P +G
Sbjct: 156 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVAIVAAEPRYGE 214
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ +++++ F D ++ G D R L+ +E
Sbjct: 215 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 258
Query: 281 GLLVGGSSGTAMH 293
G+ G S+G +H
Sbjct: 259 GIFAGISTGAVLH 271
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
AK E NPTGS+ DR A RMIE AE G+L+PG TI+EP+SGNTGI LAM A +KGY
Sbjct: 42 AKLEDRNPTGSIXDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 101
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ GA+II + + + +A A +A+ + V+L Q+ NP
Sbjct: 102 CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 158
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
N SHY T E+L D ++ V R ++E + K+V A+P +G
Sbjct: 159 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 217
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ +++++ F D ++ G D R L+ +E
Sbjct: 218 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 261
Query: 281 GLLVGGSSGTAMH 293
G+ G S+G +H
Sbjct: 262 GIFAGISTGAVLH 274
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 24/314 (7%)
Query: 4 KSLYSNSARNSPFTPTVP-GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI 62
K +Y N TP V V P+ K+G+ +L K E+ NP S+KDR + ++
Sbjct: 11 KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRIL----VKLEYFNPMSSVKDRVGFNIV 66
Query: 63 EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAK 122
A G LKPG I+E +SGNTGI L A+ GY MKA GA+
Sbjct: 67 YQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE 126
Query: 123 IIRTQNDKSYDHPEGMIAGAHRIASQMK----NAVVLDQFRNPNNPLSHYETTAEEILRD 178
+I T+ K GM + +K V +QF NP+N +H+ TA EI D
Sbjct: 127 LILTEGKK------GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWED 179
Query: 179 TGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY 238
T G+VD++V K+KEK K++ +P S + + ++
Sbjct: 180 TDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGP-------- 231
Query: 239 NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298
+ ++GIG F + +D+ +D + MAR ++K +G++ G SSG A+ +
Sbjct: 232 HGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE 291
Query: 299 AKSLRPDQRCVVIL 312
A+ + + +VI+
Sbjct: 292 AEKPENEGKTIVII 305
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV-EPSSGNTGIGLAMVAAIKGYXXX 101
K E NP S+KDR + + + AE G L PG ++V E SSGNTG+ LA + AI+GY
Sbjct: 61 KMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSVVVESSSGNTGVSLAHLGAIRGYKVI 120
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ GA++I T +G + A +I + NAV+ DQF
Sbjct: 121 ITMPESMSLERRCLLRIFGAEVILTPAALGM---KGAVTMAKKIVTANPNAVLADQFATK 177
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
N L H ETT EI T VD + R +K+ ++V +P S
Sbjct: 178 YNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPMESP 237
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
+ + + ++++GIG F LDR++ID+ D A +L +S+G
Sbjct: 238 V--------LSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVFCVAGDDAIETALKLTRSDG 289
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLT 321
+ G S G ++ A + A+ RP+ + V I+ YL+
Sbjct: 290 VFCGFSGGANVYAALKIAE--RPEMEGKTIVTIIPSFGERYLS 330
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 121/264 (45%), Gaps = 14/264 (5%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV-EPSSGNTGIGLAMVAAIKGYXXX 101
K E NP S+ DR + + + AE G L PG +IV E SSGNTG+ LA + AI+GY
Sbjct: 40 KMECENPMASVXDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVI 99
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++ GA++I T +G +A A +I + NAV+ DQF
Sbjct: 100 ITMPESMSLERRCLLRIFGAEVILTPAALGM---KGAVAMAKKIVAANPNAVLADQFATK 156
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
N L H ETT EI T VD + R +K+ ++V +P S
Sbjct: 157 YNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESP 216
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
+ + + ++++GIG F LDR++ID+ D A +L +S+G
Sbjct: 217 V--------LSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDG 268
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD 305
+ G S G ++ A + A+ RP+
Sbjct: 269 VFCGFSGGANVYAALKIAE--RPE 290
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 137/284 (48%), Gaps = 12/284 (4%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
K E NP+ S+ R M+ AE G L G IV+ +SGNTGI LA VAA +GY
Sbjct: 31 KIEGRNPSYSVXCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITL 90
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI-ASQMKNAVVLDQFRNP 161
+ LG ++ T+ K +G IA A I AS V+L QF NP
Sbjct: 91 TMPETMSLERKRLLCGLGVNLVLTEGAKGM---KGAIAKAEEIVASDPSRYVMLKQFENP 147
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIK-EKCPSCKLVGADPFGS 220
NP H ETT EI +DT GKVD++V R IK + V +P S
Sbjct: 148 ANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVES 207
Query: 221 -ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFL-MARRLIK 278
+++Q + +V ++++GIG F LD ++ID+ + D DT L ARRL+
Sbjct: 208 PVISQTLAGEEVKPGP---HKIQGIGAGFIPKNLDLSIIDRV-ETVDSDTALATARRLMA 263
Query: 279 SEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLT 321
EG+L G SSG A+ A + AK D+ VVIL YL+
Sbjct: 264 EEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLS 307
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 117/300 (39%), Gaps = 31/300 (10%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
KCE TGS K R A + + + +V SSGN G L A ++G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYI 104
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQ-NDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++A GA I+ + +D+S ++ A R+ + + +V +P
Sbjct: 105 VVPQTAPDCKKLAIQAYGASIVYCEPSDESREN------VAKRVTEETEGIMV-----HP 153
Query: 162 NNP---LSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP- 217
N ++ T A E+L VD +V+ +K PS K+ A+P
Sbjct: 154 NQEPAVIAGQGTIALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPS 212
Query: 218 -----FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATT--LDRNVIDQWGKCGDKDTF 270
+ S L N P I+ +G+ S T + R+++D + +
Sbjct: 213 NADDCYQSKLKGKLMPNLYPPETIA----DGVKSSIGLNTWPIIRDLVDDIFTVTEDEIK 268
Query: 271 LMARRLIKSEGLLVGGSSGTAM-HVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM 329
+ + + LL+ ++G + V Q +++ P+ + + I+ G LT I+ W+
Sbjct: 269 CATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSIT--WV 326
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 29/286 (10%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
KCE TGS K R A I + +V SSGN G L A ++G
Sbjct: 45 KCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYI 104
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQ-NDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
++A GA I+ ++ +D+S ++ A RI + + +V +P
Sbjct: 105 VVPQTAPNCKKLAIQAYGASIVYSEPSDESREN------VAQRIIQETEGILV-----HP 153
Query: 162 NNP---LSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP- 217
N ++ T A E+L VD +V+ IK PS K+ A+P
Sbjct: 154 NQEPAVIAGQGTIALEVLNQV-PLVDALVVPVGGGGMVAGIAITIKTLKPSVKVYAAEPS 212
Query: 218 -----FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATT--LDRNVIDQWGKCGDKDTF 270
+ S L + N P I+ +G+ S T + R+++D + +
Sbjct: 213 NADDCYQSKLKGELTPNLHPPETIA----DGVKSSIGLNTWPIIRDLVDDVFTVTEDEIK 268
Query: 271 LMARRLIKSEGLLVGGSSGTAM-HVACQAAKSLRPDQRCVVILADG 315
+ + + LL+ ++G + V Q +++ P+ + + I+ G
Sbjct: 269 YATQLVWERMKLLIEPTAGVGLAAVLSQHFQTVSPEVKNICIVLSG 314
>pdb|2K5B|B Chain B, Human Cdc37-Hsp90 Docking Model Based On Nmr
pdb|2W0G|A Chain A, Hsp90 Co-Chaperone Cdc37
Length = 129
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 328 WMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 387
W I+ ++ +E++ H M + AKSL+ D R R + TK + +
Sbjct: 46 WCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRAC------FRQFFTKIKTADR 99
Query: 388 MIEKGFLDEAEELEEMI 404
+GF DE E +E +
Sbjct: 100 QYMEGFNDELEAFKERV 116
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
KCE TGS R A + + + +V SSGN G L A ++G
Sbjct: 45 KCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYI 104
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQ-NDKSYD---------------HPE---GMIAGAH 143
++A GA I+ + +D+S + HP +IAG
Sbjct: 105 VVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIXVHPNQEPAVIAGQG 164
Query: 144 RIASQMKNAVVL 155
IA ++ N V L
Sbjct: 165 TIALEVLNQVPL 176
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 19/215 (8%)
Query: 7 YSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI---- 62
Y + A S K P+L S + KCE G+ K R A +
Sbjct: 10 YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 63 EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAK 122
E AGVL SSGN +A+ A I G K G +
Sbjct: 70 EAQRKAGVLT-------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQ 122
Query: 123 IIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGK 182
+I D+ D E M A I S+ + ++ + +P + L+ T A+E+ + G
Sbjct: 123 VI--MYDRYKDDREKM---AKEI-SEREGLTIIPPYDHP-HVLAGQGTAAKELFEEV-GP 174
Query: 183 VDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP 217
+D + + + P+C++ G +P
Sbjct: 175 LDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEP 209
>pdb|1US7|B Chain B, Complex Of Hsp90 And P50
Length = 265
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 309 VVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCV 368
V ++ + NYL + D + EK L +E++ H M + AKSL+ D R
Sbjct: 66 VHLVCEETANYLVIWCIDLEVEEKCAL-----MEQVAHQTIVMQFILELAKSLKVDPRAC 120
Query: 369 VILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI 404
R + TK + + +GF DE E +E +
Sbjct: 121 ------FRQFFTKIKTADRQYMEGFNDELEAFKERV 150
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 13 NSPFTPTVPGKVPLLPQSK-------QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDA 65
N+P G PL+ +G I L K E +NPTGS KDR I A
Sbjct: 20 NTPIVTLYEGNTPLIEADNLARAIGFKGKIYL-----KYEGLNPTGSFKDRGMTLAISKA 74
Query: 66 ETAGVLKPGYTIVEPSSGNT 85
AG ++ S+GNT
Sbjct: 75 VEAG----KRAVICASTGNT 90
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase
From Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase
From Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 13 NSPFTPTVPGKVPLLP-----QSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAET 67
+P + G PL+P ++++ I L AK E +NPTGS KDR + A
Sbjct: 18 KTPVISLLEGSTPLIPLKGPEEARKKGIRL---YAKYEGLNPTGSFKDRGMTLAVSKAVE 74
Query: 68 AGVLKPGYTIVEPSSGNT 85
G + S+GNT
Sbjct: 75 GGA----QAVACASTGNT 88
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
Length = 360
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + T K E +NPTGS KDR + DA G ++ S
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHG----QRAVLCAS 92
Query: 82 SGNT 85
+GNT
Sbjct: 93 TGNT 96
>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|A Chain A, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|B Chain B, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|D Chain D, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
Length = 271
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 328
+FL AR +K GGS G+ ++V+ AA+ P Q A G + T ++ E
Sbjct: 139 SFLCAREAVKRXSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAKGAIDTFTLGLAKEV 198
Query: 329 MIE 331
E
Sbjct: 199 ATE 201
>pdb|3I23|A Chain A, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
pdb|3I23|B Chain B, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
Length = 349
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 329 MIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM 388
++EK F D E EE+ G ++ VV+ R + +++ + +
Sbjct: 93 IVEKPFCDTLEHAEELFALG---------------QEKGVVVXPYQNRRFDGDYLAXKQV 137
Query: 389 IEKGFLDEAEELEEMI 404
+E+GFL E E+E I
Sbjct: 138 VEQGFLGEINEVETHI 153
>pdb|3FD8|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|E Chain E, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|F Chain F, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 359
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 329 MIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM 388
++EK F D E EE+ G ++ VV+ R + +++ + +
Sbjct: 95 IVEKPFCDTLEHAEELFALG---------------QEKGVVVXPYQNRRFDGDYLAXKQV 139
Query: 389 IEKGFLDEAEELEEMI 404
+E+GFL E E+E I
Sbjct: 140 VEQGFLGEINEVETHI 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,656,199
Number of Sequences: 62578
Number of extensions: 450223
Number of successful extensions: 1240
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 54
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)