Query psy14801
Match_columns 404
No_of_seqs 282 out of 2383
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 21:14:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1.2E-61 2.5E-66 444.1 34.1 294 17-321 5-299 (300)
2 PLN02565 cysteine synthase 100.0 4.3E-57 9.2E-62 430.2 34.3 303 17-330 9-313 (322)
3 PLN02356 phosphateglycerate ki 100.0 5.6E-57 1.2E-61 436.5 33.3 318 18-336 48-413 (423)
4 PRK10717 cysteine synthase A; 100.0 1.4E-56 3.1E-61 430.6 35.1 315 17-334 7-326 (330)
5 KOG1252|consensus 100.0 1.8E-57 3.9E-62 412.9 24.6 308 19-332 48-357 (362)
6 PLN03013 cysteine synthase 100.0 3.2E-56 7E-61 431.2 30.7 298 15-323 115-415 (429)
7 PLN02556 cysteine synthase/L-3 100.0 1E-55 2.2E-60 426.5 33.4 305 15-330 51-357 (368)
8 TIGR01137 cysta_beta cystathio 100.0 6.4E-55 1.4E-59 437.8 35.8 315 18-335 6-321 (454)
9 PRK11761 cysM cysteine synthas 100.0 5.4E-55 1.2E-59 412.1 32.7 290 15-324 4-293 (296)
10 TIGR01139 cysK cysteine syntha 100.0 2.2E-54 4.7E-59 410.1 36.0 293 19-323 3-296 (298)
11 TIGR01138 cysM cysteine syntha 100.0 1.8E-54 4E-59 407.6 33.2 286 18-323 3-288 (290)
12 TIGR01136 cysKM cysteine synth 100.0 3.7E-54 8.1E-59 408.5 34.9 293 20-323 4-297 (299)
13 PLN00011 cysteine synthase 100.0 7.2E-54 1.6E-58 409.6 36.9 302 19-331 13-316 (323)
14 KOG1481|consensus 100.0 8.2E-55 1.8E-59 383.6 24.4 317 19-395 45-379 (391)
15 cd01561 CBS_like CBS_like: Thi 100.0 6.4E-53 1.4E-57 398.9 35.9 290 22-321 1-291 (291)
16 COG1171 IlvA Threonine dehydra 100.0 1.1E-50 2.3E-55 378.3 22.6 292 18-318 20-316 (347)
17 PRK06608 threonine dehydratase 100.0 6.2E-50 1.4E-54 383.5 26.0 304 17-331 17-326 (338)
18 PRK06352 threonine synthase; V 100.0 1.5E-49 3.3E-54 383.4 28.3 292 15-324 20-325 (351)
19 PRK08197 threonine synthase; V 100.0 2.6E-49 5.6E-54 388.1 29.5 304 8-322 55-386 (394)
20 cd06448 L-Ser-dehyd Serine deh 100.0 3.2E-49 7E-54 376.1 28.3 289 23-317 1-303 (316)
21 PRK06721 threonine synthase; R 100.0 7.4E-49 1.6E-53 379.1 31.0 299 15-330 20-331 (352)
22 PLN02970 serine racemase 100.0 2.6E-49 5.6E-54 379.0 27.4 290 17-317 21-317 (328)
23 PRK07591 threonine synthase; V 100.0 2.7E-49 5.9E-54 389.8 28.0 305 8-322 66-396 (421)
24 PRK12483 threonine dehydratase 100.0 8.9E-49 1.9E-53 390.9 30.0 289 18-316 32-325 (521)
25 PRK07409 threonine synthase; V 100.0 1.4E-48 3E-53 378.1 29.9 292 14-323 22-328 (353)
26 PRK08526 threonine dehydratase 100.0 4.7E-49 1E-53 384.9 25.7 291 16-317 13-307 (403)
27 cd06447 D-Ser-dehyd D-Serine d 100.0 2.7E-48 5.8E-53 376.6 28.4 278 18-301 47-374 (404)
28 PRK07476 eutB threonine dehydr 100.0 1.4E-48 3E-53 373.5 26.0 289 16-317 12-307 (322)
29 PRK06382 threonine dehydratase 100.0 1.3E-48 2.8E-53 384.3 26.1 307 14-332 16-328 (406)
30 PRK08198 threonine dehydratase 100.0 1.6E-48 3.4E-53 384.8 26.6 291 15-317 14-308 (404)
31 PRK07334 threonine dehydratase 100.0 7.3E-49 1.6E-53 386.0 24.0 301 16-329 16-321 (403)
32 PRK07048 serine/threonine dehy 100.0 2.1E-48 4.6E-53 372.5 26.3 289 15-317 16-310 (321)
33 TIGR02991 ectoine_eutB ectoine 100.0 3E-48 6.4E-53 369.7 27.0 288 16-317 12-306 (317)
34 PRK06110 hypothetical protein; 100.0 1.8E-48 3.8E-53 372.8 25.5 290 16-317 14-307 (322)
35 PRK08329 threonine synthase; V 100.0 9.4E-48 2E-52 370.7 30.0 285 8-319 41-346 (347)
36 cd01563 Thr-synth_1 Threonine 100.0 1.2E-47 2.6E-52 368.5 30.4 293 14-318 13-323 (324)
37 PLN02569 threonine synthase 100.0 1.8E-47 4E-52 379.3 31.9 306 8-323 108-445 (484)
38 PLN02550 threonine dehydratase 100.0 5E-48 1.1E-52 387.2 28.1 290 18-317 104-398 (591)
39 PRK02991 D-serine dehydratase; 100.0 8.4E-48 1.8E-52 377.6 28.9 295 18-318 70-425 (441)
40 PRK06815 hypothetical protein; 100.0 6.7E-48 1.5E-52 368.0 27.0 292 15-318 12-308 (317)
41 PRK08638 threonine dehydratase 100.0 6.6E-48 1.4E-52 368.8 26.8 292 14-317 18-315 (333)
42 cd01562 Thr-dehyd Threonine de 100.0 5.1E-48 1.1E-52 368.3 25.9 291 15-317 9-303 (304)
43 TIGR01124 ilvA_2Cterm threonin 100.0 1.1E-47 2.3E-52 383.8 29.1 290 17-317 11-306 (499)
44 PRK08639 threonine dehydratase 100.0 5.4E-48 1.2E-52 381.2 26.3 295 15-317 17-317 (420)
45 PRK08813 threonine dehydratase 100.0 1.5E-47 3.1E-52 365.2 28.1 277 15-317 31-310 (349)
46 PRK06260 threonine synthase; V 100.0 1.2E-47 2.7E-52 376.6 28.0 302 8-321 45-372 (397)
47 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.1E-47 4.5E-52 373.3 29.1 292 19-316 66-420 (431)
48 TIGR01127 ilvA_1Cterm threonin 100.0 5.7E-48 1.2E-52 378.1 25.2 281 24-316 1-285 (380)
49 PRK06381 threonine synthase; V 100.0 2.8E-47 6E-52 364.9 28.9 287 19-315 11-317 (319)
50 PRK08246 threonine dehydratase 100.0 1.8E-47 3.9E-52 363.4 27.4 287 14-317 14-304 (310)
51 TIGR02079 THD1 threonine dehyd 100.0 1.8E-47 4E-52 375.5 27.7 292 15-317 8-306 (409)
52 PRK06450 threonine synthase; V 100.0 4.7E-47 1E-51 363.0 29.5 273 16-319 51-337 (338)
53 PRK09224 threonine dehydratase 100.0 3.7E-47 8.1E-52 381.6 29.1 290 17-317 14-309 (504)
54 PRK05638 threonine synthase; V 100.0 8.9E-47 1.9E-51 375.2 29.2 296 8-320 44-359 (442)
55 cd00640 Trp-synth-beta_II Tryp 100.0 8E-46 1.7E-50 342.1 31.4 243 24-315 1-244 (244)
56 TIGR00260 thrC threonine synth 100.0 1.7E-45 3.7E-50 354.2 26.4 289 16-319 16-326 (328)
57 PRK08206 diaminopropionate amm 100.0 1.7E-45 3.7E-50 360.1 25.8 292 19-316 40-383 (399)
58 KOG1250|consensus 100.0 9.3E-45 2E-49 334.9 22.5 288 20-317 63-354 (457)
59 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-43 2.4E-48 344.7 30.1 294 22-322 33-364 (365)
60 TIGR03844 cysteate_syn cysteat 100.0 1.9E-44 4.1E-49 351.3 22.8 302 8-322 42-385 (398)
61 PRK04346 tryptophan synthase s 100.0 2E-43 4.4E-48 341.8 27.4 299 19-323 53-389 (397)
62 PRK13028 tryptophan synthase s 100.0 5.3E-43 1.1E-47 339.5 30.2 299 19-323 57-393 (402)
63 TIGR00263 trpB tryptophan synt 100.0 3.5E-43 7.5E-48 342.7 28.1 296 22-323 49-381 (385)
64 PLN02618 tryptophan synthase, 100.0 3.7E-43 8E-48 340.5 27.9 301 17-323 59-402 (410)
65 KOG1251|consensus 100.0 8.8E-44 1.9E-48 308.5 19.8 293 9-318 15-312 (323)
66 TIGR01415 trpB_rel pyridoxal-p 100.0 1.9E-42 4.2E-47 338.5 31.2 291 19-317 64-406 (419)
67 PF00291 PALP: Pyridoxal-phosp 100.0 6.1E-44 1.3E-48 340.7 19.0 283 17-314 1-306 (306)
68 PRK12391 tryptophan synthase s 100.0 4.2E-42 9E-47 336.5 32.3 291 20-317 74-415 (427)
69 PRK14045 1-aminocyclopropane-1 100.0 2.6E-43 5.7E-48 337.8 22.1 294 15-318 13-317 (329)
70 PRK12390 1-aminocyclopropane-1 100.0 6.3E-43 1.4E-47 336.7 24.2 293 14-318 6-327 (337)
71 cd06449 ACCD Aminocyclopropane 100.0 3E-43 6.5E-48 335.1 21.6 281 24-315 1-307 (307)
72 TIGR01275 ACC_deam_rel pyridox 100.0 7.1E-43 1.5E-47 333.4 23.1 289 19-318 3-303 (311)
73 PRK03910 D-cysteine desulfhydr 100.0 7.6E-43 1.6E-47 335.4 23.3 290 15-317 7-320 (331)
74 PRK13802 bifunctional indole-3 100.0 5.4E-42 1.2E-46 349.5 30.6 302 17-324 319-670 (695)
75 TIGR01747 diampropi_NH3ly diam 100.0 4.5E-42 9.8E-47 332.5 27.4 288 23-317 22-365 (376)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 3.6E-42 7.8E-47 331.3 26.1 293 14-318 5-326 (337)
77 TIGR03528 2_3_DAP_am_ly diamin 100.0 5.1E-42 1.1E-46 334.3 25.5 290 22-317 40-384 (396)
78 PRK13803 bifunctional phosphor 100.0 1.7E-40 3.6E-45 339.9 25.7 299 19-323 266-601 (610)
79 COG0498 ThrC Threonine synthas 100.0 5.4E-39 1.2E-43 309.3 22.0 293 18-322 71-378 (411)
80 COG0031 CysK Cysteine synthase 100.0 7.6E-38 1.6E-42 287.1 12.6 227 151-381 26-300 (300)
81 KOG1252|consensus 100.0 2E-34 4.4E-39 262.6 10.4 236 153-393 69-359 (362)
82 PRK09225 threonine synthase; V 100.0 3.2E-30 6.9E-35 254.2 24.1 282 23-322 88-417 (462)
83 cd01560 Thr-synth_2 Threonine 100.0 3.7E-30 8.1E-35 254.0 24.3 281 23-322 87-421 (460)
84 COG0133 TrpB Tryptophan syntha 100.0 5.7E-30 1.2E-34 230.8 20.0 294 21-322 54-385 (396)
85 COG2515 Acd 1-aminocyclopropan 100.0 2.1E-28 4.5E-33 220.7 19.5 294 14-317 6-314 (323)
86 PLN02356 phosphateglycerate ki 100.0 4.9E-29 1.1E-33 241.9 16.7 240 151-394 68-412 (423)
87 KOG1395|consensus 99.9 3.1E-26 6.8E-31 208.7 16.7 294 20-321 119-452 (477)
88 COG1350 Predicted alternative 99.9 2.3E-24 4.9E-29 195.0 21.1 289 20-316 75-415 (432)
89 PLN02556 cysteine synthase/L-3 99.9 1.4E-25 3.1E-30 216.9 13.1 237 151-391 74-359 (368)
90 PLN02565 cysteine synthase 99.9 7.8E-25 1.7E-29 208.8 15.0 234 152-389 31-313 (322)
91 PLN03013 cysteine synthase 99.9 3.3E-24 7.1E-29 208.4 13.2 235 151-389 138-425 (429)
92 TIGR01137 cysta_beta cystathio 99.9 4.2E-24 9E-29 214.7 13.9 240 151-398 26-325 (454)
93 PRK10717 cysteine synthase A; 99.9 5.4E-24 1.2E-28 204.7 13.6 241 150-394 27-327 (330)
94 TIGR01138 cysM cysteine syntha 99.9 5.1E-23 1.1E-27 194.0 14.2 227 150-383 22-290 (290)
95 PRK11761 cysM cysteine synthas 99.9 8.3E-23 1.8E-27 193.0 13.3 227 151-384 27-295 (296)
96 PLN00011 cysteine synthase 99.9 7.3E-22 1.6E-26 189.0 14.6 238 152-393 33-320 (323)
97 TIGR01139 cysK cysteine syntha 99.8 5E-20 1.1E-24 174.9 14.9 226 151-381 21-295 (298)
98 COG3048 DsdA D-serine dehydrat 99.8 1.6E-19 3.4E-24 162.3 12.5 292 19-316 74-428 (443)
99 PRK06608 threonine dehydratase 99.8 5.5E-20 1.2E-24 176.7 9.2 242 143-390 30-326 (338)
100 TIGR01136 cysKM cysteine synth 99.8 2.8E-19 6.1E-24 169.7 13.1 227 151-381 22-296 (299)
101 PRK06721 threonine synthase; R 99.8 3.1E-19 6.7E-24 172.8 11.5 247 145-398 37-340 (352)
102 KOG1481|consensus 99.8 3.8E-19 8.2E-24 158.1 6.0 168 143-316 56-252 (391)
103 cd01561 CBS_like CBS_like: Thi 99.8 6E-18 1.3E-22 160.1 13.2 228 149-380 15-291 (291)
104 PRK06352 threonine synthase; V 99.7 5E-18 1.1E-22 164.2 11.0 227 144-382 36-324 (351)
105 PRK07334 threonine dehydratase 99.7 7.9E-18 1.7E-22 166.0 9.9 243 143-391 30-324 (403)
106 PRK08638 threonine dehydratase 99.7 4E-17 8.7E-22 156.6 11.4 231 144-383 35-321 (333)
107 cd06446 Trp-synth_B Tryptophan 99.7 2.2E-16 4.7E-21 153.7 14.6 235 143-382 41-365 (365)
108 PRK07409 threonine synthase; V 99.7 1.1E-16 2.3E-21 155.4 12.4 233 145-383 40-329 (353)
109 PRK08198 threonine dehydratase 99.7 1.2E-16 2.6E-21 158.0 12.0 245 142-392 28-326 (404)
110 PLN02618 tryptophan synthase, 99.7 2.1E-16 4.5E-21 154.0 11.3 228 151-383 87-403 (410)
111 TIGR00263 trpB tryptophan synt 99.7 3.6E-16 7.8E-21 152.9 12.3 236 142-382 56-381 (385)
112 PRK08197 threonine synthase; V 99.7 4.5E-16 9.8E-21 153.1 13.0 229 142-382 85-387 (394)
113 PRK06382 threonine dehydratase 99.7 3.4E-16 7.4E-21 154.5 11.8 243 144-393 33-330 (406)
114 PLN02970 serine racemase 99.7 1.7E-16 3.6E-21 152.4 8.8 231 144-380 35-320 (328)
115 cd06448 L-Ser-dehyd Serine deh 99.7 4.9E-16 1.1E-20 148.3 11.9 222 150-376 15-303 (316)
116 PRK07048 serine/threonine dehy 99.7 4E-16 8.7E-21 149.6 10.7 228 145-381 33-314 (321)
117 cd01563 Thr-synth_1 Threonine 99.7 6E-16 1.3E-20 148.8 11.9 221 151-377 38-323 (324)
118 PRK13028 tryptophan synthase s 99.7 8.7E-16 1.9E-20 149.7 13.0 237 142-383 68-394 (402)
119 cd00640 Trp-synth-beta_II Tryp 99.7 7.2E-16 1.6E-20 142.3 11.5 214 151-374 15-244 (244)
120 PRK06815 hypothetical protein; 99.6 5.2E-16 1.1E-20 148.4 10.3 222 144-377 28-308 (317)
121 cd01562 Thr-dehyd Threonine de 99.6 5.4E-16 1.2E-20 147.8 9.5 227 143-375 24-302 (304)
122 TIGR01127 ilvA_1Cterm threonin 99.6 6.8E-16 1.5E-20 151.5 9.7 242 143-390 7-302 (380)
123 PRK04346 tryptophan synthase s 99.6 2.9E-15 6.3E-20 145.8 13.6 237 142-383 64-390 (397)
124 PRK08639 threonine dehydratase 99.6 2.4E-15 5.3E-20 149.0 13.0 232 143-381 32-321 (420)
125 PRK13802 bifunctional indole-3 99.6 2.9E-15 6.2E-20 154.0 12.5 226 152-382 348-669 (695)
126 PRK06110 hypothetical protein; 99.6 1.7E-15 3.7E-20 145.2 10.1 228 143-381 28-311 (322)
127 PRK13803 bifunctional phosphor 99.6 1.7E-14 3.7E-19 148.5 13.3 239 144-389 279-606 (610)
128 TIGR02079 THD1 threonine dehyd 99.6 1.4E-14 3.1E-19 142.8 11.0 232 143-381 23-310 (409)
129 PLN02569 threonine synthase 99.5 4.4E-14 9.6E-19 141.1 12.8 234 142-381 139-444 (484)
130 cd06447 D-Ser-dehyd D-Serine d 99.5 1.2E-14 2.7E-19 141.7 8.3 211 151-366 75-379 (404)
131 PRK08246 threonine dehydratase 99.5 1.2E-14 2.7E-19 138.4 8.2 211 151-376 37-304 (310)
132 PRK05638 threonine synthase; V 99.5 3.7E-14 8.1E-19 141.5 11.8 224 151-379 80-359 (442)
133 PRK06381 threonine synthase; V 99.5 7.3E-14 1.6E-18 134.0 12.4 227 142-373 21-316 (319)
134 PRK07591 threonine synthase; V 99.5 5.2E-14 1.1E-18 139.3 11.7 233 142-382 95-397 (421)
135 PRK12391 tryptophan synthase s 99.5 4.6E-14 1E-18 139.0 10.9 233 152-389 95-426 (427)
136 TIGR01124 ilvA_2Cterm threonin 99.5 7.9E-14 1.7E-18 140.2 12.6 231 142-377 23-307 (499)
137 PRK08206 diaminopropionate amm 99.5 1.7E-13 3.6E-18 134.7 12.4 239 143-385 51-396 (399)
138 PRK07476 eutB threonine dehydr 99.5 8.9E-14 1.9E-18 133.3 10.1 165 144-316 27-205 (322)
139 PRK06260 threonine synthase; V 99.5 1.4E-13 3E-18 135.6 11.6 224 152-381 84-373 (397)
140 PRK08329 threonine synthase; V 99.5 1.8E-13 3.8E-18 132.5 12.1 223 152-379 73-347 (347)
141 PRK08526 threonine dehydratase 99.5 6.9E-14 1.5E-18 137.4 9.2 223 142-373 26-304 (403)
142 TIGR02991 ectoine_eutB ectoine 99.5 1.5E-13 3.3E-18 131.2 10.9 226 144-376 27-306 (317)
143 TIGR01415 trpB_rel pyridoxal-p 99.5 1.9E-13 4.1E-18 134.5 10.0 231 152-388 86-416 (419)
144 PRK12483 threonine dehydratase 99.5 4.2E-13 9E-18 135.0 12.1 224 143-375 44-325 (521)
145 PRK09224 threonine dehydratase 99.5 1.9E-13 4.2E-18 138.0 9.8 231 142-377 26-310 (504)
146 PLN02550 threonine dehydratase 99.5 4.7E-13 1E-17 135.5 12.3 226 141-376 114-398 (591)
147 TIGR00260 thrC threonine synth 99.5 4E-13 8.6E-18 129.5 11.3 220 152-379 40-327 (328)
148 cd06449 ACCD Aminocyclopropane 99.4 8.7E-13 1.9E-17 125.8 12.4 218 151-373 17-306 (307)
149 TIGR01275 ACC_deam_rel pyridox 99.4 1.5E-12 3.2E-17 124.5 13.7 226 144-374 15-300 (311)
150 PRK06450 threonine synthase; V 99.4 5.1E-13 1.1E-17 128.3 9.8 214 153-377 67-336 (338)
151 PRK03910 D-cysteine desulfhydr 99.4 3.1E-12 6.8E-17 123.2 12.7 226 144-375 23-318 (331)
152 PRK12390 1-aminocyclopropane-1 99.4 4.9E-12 1.1E-16 122.2 12.2 226 143-373 22-323 (337)
153 PRK08813 threonine dehydratase 99.4 2.3E-12 5E-17 123.6 9.6 212 153-376 50-310 (349)
154 PRK14045 1-aminocyclopropane-1 99.4 7.1E-12 1.5E-16 120.5 12.9 226 143-374 28-314 (329)
155 PRK02991 D-serine dehydratase; 99.3 3.2E-12 6.8E-17 126.4 9.7 224 151-381 98-429 (441)
156 TIGR02035 D_Ser_am_lyase D-ser 99.3 3.6E-12 7.8E-17 125.5 9.5 199 151-360 93-392 (431)
157 PF00291 PALP: Pyridoxal-phosp 99.3 1.1E-12 2.3E-17 125.2 4.6 219 147-373 20-306 (306)
158 TIGR01274 ACC_deam 1-aminocycl 99.3 1.8E-11 3.8E-16 118.2 13.1 229 142-377 20-325 (337)
159 KOG1250|consensus 99.1 5.4E-10 1.2E-14 104.9 9.0 227 143-375 73-353 (457)
160 COG1171 IlvA Threonine dehydra 99.0 1.7E-09 3.8E-14 102.0 8.3 167 142-316 31-213 (347)
161 TIGR03844 cysteate_syn cysteat 98.8 3.5E-08 7.6E-13 96.9 10.8 218 156-381 91-385 (398)
162 TIGR03528 2_3_DAP_am_ly diamin 98.7 1.5E-07 3.3E-12 92.5 12.3 76 142-221 47-148 (396)
163 TIGR01747 diampropi_NH3ly diam 98.7 1.4E-07 3E-12 92.1 10.6 169 142-316 28-246 (376)
164 KOG1251|consensus 98.3 4.8E-06 1E-10 73.9 10.1 213 152-374 42-309 (323)
165 COG0498 ThrC Threonine synthas 97.7 0.00017 3.7E-09 70.6 9.7 223 152-382 96-379 (411)
166 COG0133 TrpB Tryptophan syntha 97.7 0.00025 5.5E-09 65.6 10.0 239 138-383 58-387 (396)
167 KOG1395|consensus 97.3 0.0021 4.6E-08 60.3 10.8 79 139-220 125-206 (477)
168 COG1350 Predicted alternative 91.4 2.1 4.6E-05 40.4 10.2 65 153-220 98-162 (432)
169 KOG2616|consensus 91.3 0.43 9.4E-06 42.2 5.3 57 263-319 150-206 (266)
170 COG2515 Acd 1-aminocyclopropan 91.0 1.5 3.2E-05 41.1 8.7 53 266-318 168-220 (323)
171 cd01560 Thr-synth_2 Threonine 90.5 0.66 1.4E-05 46.7 6.5 65 151-219 96-166 (460)
172 PRK09424 pntA NAD(P) transhydr 89.5 5.5 0.00012 40.7 12.2 54 71-127 162-215 (509)
173 PRK09225 threonine synthase; V 89.1 0.93 2E-05 45.7 6.4 64 152-219 98-165 (462)
174 cd08230 glucose_DH Glucose deh 87.6 3.8 8.2E-05 39.6 9.5 54 71-124 170-223 (355)
175 TIGR03366 HpnZ_proposed putati 86.1 5.2 0.00011 37.3 9.3 58 66-125 113-170 (280)
176 KOG2862|consensus 84.6 18 0.00038 34.3 11.4 91 74-166 68-159 (385)
177 COG1064 AdhP Zn-dependent alco 82.1 5.5 0.00012 38.3 7.4 61 64-127 157-217 (339)
178 PF00764 Arginosuc_synth: Argi 82.1 27 0.00058 34.4 12.3 128 77-214 1-138 (388)
179 cd01075 NAD_bind_Leu_Phe_Val_D 80.5 19 0.00041 31.9 10.0 67 55-124 6-76 (200)
180 TIGR02822 adh_fam_2 zinc-bindi 79.6 8.4 0.00018 36.9 8.1 57 66-125 158-214 (329)
181 COG0604 Qor NADPH:quinone redu 79.6 55 0.0012 31.4 13.6 56 68-126 137-193 (326)
182 TIGR03201 dearomat_had 6-hydro 79.5 12 0.00027 35.9 9.3 58 66-126 159-216 (349)
183 TIGR00670 asp_carb_tr aspartat 79.3 9.4 0.0002 36.2 8.0 59 68-127 145-208 (301)
184 KOG0024|consensus 79.1 9.3 0.0002 36.3 7.7 62 64-127 160-221 (354)
185 PRK07109 short chain dehydroge 78.6 64 0.0014 30.9 15.2 72 75-148 10-82 (334)
186 TIGR02819 fdhA_non_GSH formald 77.9 17 0.00037 35.8 9.8 57 66-124 178-234 (393)
187 COG2039 Pcp Pyrrolidone-carbox 76.9 36 0.00078 29.8 10.0 132 169-312 16-166 (207)
188 KOG0025|consensus 76.5 14 0.00031 34.6 7.9 87 39-128 124-217 (354)
189 COG1167 ARO8 Transcriptional r 75.7 40 0.00086 34.1 11.9 115 67-189 148-265 (459)
190 PF05368 NmrA: NmrA-like famil 75.5 13 0.00028 33.4 7.7 49 77-126 2-50 (233)
191 PF08659 KR: KR domain; Inter 75.2 17 0.00036 31.5 8.0 72 75-148 2-78 (181)
192 PRK07114 keto-hydroxyglutarate 75.1 64 0.0014 29.1 13.2 39 174-214 124-163 (222)
193 PRK09147 succinyldiaminopimela 74.3 39 0.00084 33.2 11.3 112 49-165 64-182 (396)
194 KOG0023|consensus 74.1 13 0.00027 35.4 7.1 60 66-128 175-234 (360)
195 PRK09880 L-idonate 5-dehydroge 74.0 17 0.00036 34.9 8.5 58 66-125 162-219 (343)
196 cd00401 AdoHcyase S-adenosyl-L 73.8 13 0.00028 36.9 7.6 53 69-124 197-249 (413)
197 PRK10309 galactitol-1-phosphat 73.8 18 0.0004 34.7 8.7 57 66-124 153-209 (347)
198 cd08281 liver_ADH_like1 Zinc-d 73.6 22 0.00048 34.6 9.3 57 67-125 185-241 (371)
199 PRK12771 putative glutamate sy 73.2 7.3 0.00016 40.5 6.1 56 71-126 134-207 (564)
200 PLN02740 Alcohol dehydrogenase 73.1 19 0.0004 35.3 8.6 57 67-125 192-248 (381)
201 TIGR03451 mycoS_dep_FDH mycoth 73.0 20 0.00043 34.7 8.8 58 66-125 169-226 (358)
202 TIGR02818 adh_III_F_hyde S-(hy 73.0 24 0.00052 34.3 9.4 57 67-125 179-235 (368)
203 PF01210 NAD_Gly3P_dh_N: NAD-d 73.0 7.7 0.00017 32.8 5.2 43 76-121 1-43 (157)
204 TIGR03538 DapC_gpp succinyldia 72.8 48 0.001 32.4 11.6 87 75-165 91-181 (393)
205 cd08239 THR_DH_like L-threonin 72.8 23 0.00051 33.7 9.1 58 66-125 156-213 (339)
206 PRK12743 oxidoreductase; Provi 72.6 32 0.0007 31.2 9.7 72 75-148 4-77 (256)
207 cd08301 alcohol_DH_plants Plan 72.5 24 0.00053 34.2 9.3 57 67-125 181-237 (369)
208 cd08277 liver_alcohol_DH_like 71.2 25 0.00054 34.1 9.0 56 67-124 178-233 (365)
209 PRK12823 benD 1,6-dihydroxycyc 71.1 33 0.00071 31.2 9.4 72 75-148 10-81 (260)
210 cd08300 alcohol_DH_class_III c 70.8 24 0.00052 34.3 8.8 57 67-125 180-236 (368)
211 PF03808 Glyco_tran_WecB: Glyc 70.6 37 0.0008 29.2 9.0 104 85-203 12-120 (172)
212 TIGR02825 B4_12hDH leukotriene 69.7 34 0.00074 32.4 9.4 56 67-125 132-188 (325)
213 COG1063 Tdh Threonine dehydrog 69.5 32 0.0007 33.3 9.3 77 49-128 139-222 (350)
214 PF04127 DFP: DNA / pantothena 69.4 35 0.00075 29.9 8.5 63 75-149 21-83 (185)
215 COG0078 ArgF Ornithine carbamo 69.4 39 0.00084 31.9 9.1 55 73-127 152-213 (310)
216 TIGR01182 eda Entner-Doudoroff 69.0 85 0.0018 27.9 13.5 113 78-214 39-153 (204)
217 cd08242 MDR_like Medium chain 69.0 37 0.00081 31.9 9.5 56 66-124 148-203 (319)
218 KOG1014|consensus 68.9 47 0.001 31.5 9.6 78 75-155 51-131 (312)
219 cd08256 Zn_ADH2 Alcohol dehydr 68.4 38 0.00083 32.4 9.6 57 67-125 168-224 (350)
220 PRK08226 short chain dehydroge 68.3 44 0.00096 30.4 9.6 71 75-147 8-78 (263)
221 cd08233 butanediol_DH_like (2R 68.3 38 0.00083 32.4 9.6 58 67-126 166-223 (351)
222 COG1751 Uncharacterized conser 67.9 44 0.00095 28.1 8.1 74 49-127 7-90 (186)
223 PRK08628 short chain dehydroge 67.9 50 0.0011 29.9 9.9 70 75-146 9-78 (258)
224 PRK14030 glutamate dehydrogena 67.4 35 0.00076 34.2 9.0 50 54-103 207-257 (445)
225 PRK12814 putative NADPH-depend 67.3 1.7E+02 0.0038 31.0 14.9 53 74-126 193-263 (652)
226 cd08294 leukotriene_B4_DH_like 67.1 41 0.00088 31.7 9.4 56 67-125 137-193 (329)
227 PRK13394 3-hydroxybutyrate deh 67.1 48 0.001 30.0 9.6 69 75-145 9-78 (262)
228 KOG2915|consensus 67.0 9.6 0.00021 35.3 4.6 43 174-218 96-139 (314)
229 cd06533 Glyco_transf_WecG_TagA 67.0 46 0.00099 28.6 8.8 96 86-194 11-111 (171)
230 PRK06935 2-deoxy-D-gluconate 3 67.0 53 0.0012 29.8 9.9 72 75-148 17-88 (258)
231 TIGR00561 pntA NAD(P) transhyd 66.9 23 0.0005 36.2 7.8 53 73-128 163-215 (511)
232 KOG0634|consensus 66.8 31 0.00066 34.2 8.2 54 77-130 126-179 (472)
233 PRK10669 putative cation:proto 66.1 95 0.0021 32.2 12.5 49 75-126 418-466 (558)
234 PRK12481 2-deoxy-D-gluconate 3 65.9 55 0.0012 29.7 9.7 68 75-145 10-77 (251)
235 PRK02610 histidinol-phosphate 65.8 1E+02 0.0022 30.0 12.0 87 76-166 93-185 (374)
236 PRK08993 2-deoxy-D-gluconate 3 65.7 65 0.0014 29.1 10.2 70 75-147 12-81 (253)
237 PF00070 Pyr_redox: Pyridine n 65.6 27 0.00059 25.4 6.2 50 76-125 1-59 (80)
238 PLN02827 Alcohol dehydrogenase 65.3 45 0.00098 32.6 9.5 56 67-124 187-242 (378)
239 TIGR01832 kduD 2-deoxy-D-gluco 65.0 64 0.0014 28.9 9.9 70 75-147 7-76 (248)
240 PF00185 OTCace: Aspartate/orn 65.0 29 0.00063 29.4 7.0 53 75-127 3-65 (158)
241 PF00670 AdoHcyase_NAD: S-aden 65.0 33 0.00071 29.3 7.2 116 69-217 18-133 (162)
242 PTZ00079 NADP-specific glutama 64.9 44 0.00094 33.6 9.1 50 55-104 217-267 (454)
243 PRK08589 short chain dehydroge 64.8 52 0.0011 30.2 9.4 72 75-148 8-79 (272)
244 PRK15481 transcriptional regul 64.6 1.3E+02 0.0028 29.9 12.8 86 75-166 142-229 (431)
245 PF01262 AlaDh_PNT_C: Alanine 64.5 35 0.00077 29.1 7.6 51 75-128 21-71 (168)
246 COG0159 TrpA Tryptophan syntha 64.0 1.1E+02 0.0024 28.4 10.9 61 56-120 109-170 (265)
247 PF01041 DegT_DnrJ_EryC1: DegT 63.9 17 0.00038 35.3 6.2 55 75-129 41-95 (363)
248 PLN03154 putative allyl alcoho 63.8 52 0.0011 31.7 9.5 56 67-125 152-209 (348)
249 PRK07402 precorrin-6B methylas 63.7 20 0.00044 31.4 6.1 50 169-220 26-75 (196)
250 TIGR01064 pyruv_kin pyruvate k 63.5 1.2E+02 0.0027 30.7 12.3 126 89-220 262-407 (473)
251 PF12847 Methyltransf_18: Meth 63.2 9.4 0.0002 29.6 3.5 36 183-220 1-36 (112)
252 cd08231 MDR_TM0436_like Hypoth 63.0 54 0.0012 31.5 9.5 53 69-124 173-226 (361)
253 COG2242 CobL Precorrin-6B meth 62.9 39 0.00084 29.6 7.4 127 176-312 27-160 (187)
254 PRK12937 short chain dehydroge 62.9 74 0.0016 28.3 9.9 72 75-148 7-80 (245)
255 PF00106 adh_short: short chai 62.0 67 0.0014 26.7 8.9 71 75-147 2-76 (167)
256 cd08284 FDH_like_2 Glutathione 61.8 47 0.001 31.6 8.8 53 69-123 163-215 (344)
257 PRK05557 fabG 3-ketoacyl-(acyl 61.6 80 0.0017 28.0 9.9 71 75-147 7-79 (248)
258 TIGR02469 CbiT precorrin-6Y C5 61.4 28 0.00061 27.3 6.1 45 174-220 10-54 (124)
259 COG0026 PurK Phosphoribosylami 61.3 46 0.001 32.3 8.2 35 75-109 2-36 (375)
260 cd08296 CAD_like Cinnamyl alco 61.2 53 0.0012 31.2 9.0 52 70-124 160-211 (333)
261 TIGR01316 gltA glutamate synth 61.2 33 0.00072 34.5 7.8 53 73-125 271-328 (449)
262 COG0075 Serine-pyruvate aminot 61.1 56 0.0012 32.1 9.0 55 75-129 57-112 (383)
263 cd08287 FDH_like_ADH3 formalde 60.8 62 0.0013 30.8 9.5 55 68-124 163-217 (345)
264 PRK05396 tdh L-threonine 3-deh 60.7 34 0.00073 32.6 7.6 52 72-125 162-213 (341)
265 cd08274 MDR9 Medium chain dehy 60.7 54 0.0012 31.2 9.0 55 66-124 170-225 (350)
266 cd08295 double_bond_reductase_ 60.6 61 0.0013 30.8 9.3 55 67-124 145-201 (338)
267 cd08285 NADP_ADH NADP(H)-depen 60.3 52 0.0011 31.5 8.8 57 66-124 159-215 (351)
268 PLN02256 arogenate dehydrogena 60.2 1.6E+02 0.0034 28.0 14.2 115 75-220 37-155 (304)
269 PRK08306 dipicolinate synthase 60.2 69 0.0015 30.3 9.3 49 73-124 151-199 (296)
270 cd08298 CAD2 Cinnamyl alcohol 59.9 55 0.0012 30.9 8.8 53 67-122 161-213 (329)
271 PRK07523 gluconate 5-dehydroge 59.9 72 0.0016 28.8 9.3 54 75-128 12-66 (255)
272 cd05313 NAD_bind_2_Glu_DH NAD( 59.8 73 0.0016 29.4 9.1 51 55-105 18-69 (254)
273 PRK07478 short chain dehydroge 59.8 67 0.0015 29.0 9.1 72 75-148 8-80 (254)
274 PRK08277 D-mannonate oxidoredu 59.7 74 0.0016 29.2 9.5 54 75-128 12-66 (278)
275 cd08258 Zn_ADH4 Alcohol dehydr 59.7 64 0.0014 30.3 9.1 54 68-122 159-212 (306)
276 PF02826 2-Hacid_dh_C: D-isome 59.5 73 0.0016 27.4 8.8 99 73-198 35-134 (178)
277 PRK06139 short chain dehydroge 59.3 59 0.0013 31.2 8.9 72 75-148 9-81 (330)
278 PRK06128 oxidoreductase; Provi 59.2 1.1E+02 0.0024 28.6 10.7 71 75-147 57-130 (300)
279 PRK09257 aromatic amino acid a 59.0 1.4E+02 0.0031 29.2 11.8 109 49-165 68-188 (396)
280 PRK05370 argininosuccinate syn 58.8 2E+02 0.0044 28.8 15.2 129 75-214 12-155 (447)
281 PRK07666 fabG 3-ketoacyl-(acyl 58.8 86 0.0019 27.9 9.5 70 75-146 9-79 (239)
282 PRK12809 putative oxidoreducta 58.5 32 0.0007 36.4 7.5 76 51-126 279-380 (639)
283 PTZ00376 aspartate aminotransf 58.0 1.7E+02 0.0036 28.8 12.1 113 49-166 71-193 (404)
284 cd08299 alcohol_DH_class_I_II_ 57.8 66 0.0014 31.3 9.2 54 67-122 184-237 (373)
285 cd08282 PFDH_like Pseudomonas 57.7 66 0.0014 31.2 9.1 55 67-123 170-224 (375)
286 PRK06425 histidinol-phosphate 57.3 1.5E+02 0.0033 28.2 11.4 95 75-180 58-152 (332)
287 PRK14103 trans-aconitate 2-met 57.2 24 0.00052 32.4 5.6 50 169-220 15-64 (255)
288 PRK11891 aspartate carbamoyltr 57.0 51 0.0011 32.9 8.1 54 74-127 241-300 (429)
289 PRK10083 putative oxidoreducta 57.0 73 0.0016 30.2 9.2 57 66-124 153-210 (339)
290 PRK03659 glutathione-regulated 56.9 1.7E+02 0.0036 30.8 12.3 49 75-126 401-449 (601)
291 PLN02178 cinnamyl-alcohol dehy 56.8 33 0.00071 33.6 6.8 51 72-124 177-227 (375)
292 PLN02586 probable cinnamyl alc 56.7 52 0.0011 31.9 8.2 55 69-125 179-233 (360)
293 COG2130 Putative NADP-dependen 56.6 1.5E+02 0.0032 28.2 10.4 57 66-125 143-201 (340)
294 PRK06114 short chain dehydroge 56.6 1.3E+02 0.0028 27.1 10.5 54 75-128 10-65 (254)
295 TIGR00936 ahcY adenosylhomocys 56.6 31 0.00068 34.2 6.5 52 69-123 190-241 (406)
296 PRK07324 transaminase; Validat 56.6 80 0.0017 30.7 9.5 86 75-166 81-170 (373)
297 PRK07550 hypothetical protein; 56.5 2E+02 0.0043 28.0 13.6 77 50-129 67-144 (386)
298 PRK03562 glutathione-regulated 56.5 1.6E+02 0.0034 31.2 12.1 51 75-128 401-451 (621)
299 PRK08936 glucose-1-dehydrogena 56.4 1.1E+02 0.0025 27.6 10.1 71 75-147 9-81 (261)
300 cd08289 MDR_yhfp_like Yhfp put 56.4 83 0.0018 29.5 9.4 48 74-124 147-195 (326)
301 PRK07454 short chain dehydroge 56.2 83 0.0018 28.1 9.0 71 75-147 8-79 (241)
302 PRK13376 pyrB bifunctional asp 56.2 1.1E+02 0.0023 31.6 10.3 61 67-127 167-233 (525)
303 PRK07097 gluconate 5-dehydroge 56.1 84 0.0018 28.6 9.1 71 75-147 12-83 (265)
304 PRK12745 3-ketoacyl-(acyl-carr 56.0 1.1E+02 0.0024 27.4 9.9 72 75-148 4-77 (256)
305 cd08269 Zn_ADH9 Alcohol dehydr 55.8 88 0.0019 29.0 9.4 54 67-123 123-177 (312)
306 PRK08912 hypothetical protein; 55.8 2E+02 0.0044 27.9 13.6 109 50-165 63-175 (387)
307 PRK08287 cobalt-precorrin-6Y C 55.8 33 0.00072 29.7 6.0 50 169-220 17-66 (187)
308 PRK07366 succinyldiaminopimela 55.6 2.1E+02 0.0044 27.9 13.6 85 76-166 94-182 (388)
309 PRK12810 gltD glutamate syntha 55.6 1.1E+02 0.0024 30.9 10.6 76 50-125 111-212 (471)
310 PLN00175 aminotransferase fami 55.4 2.2E+02 0.0048 28.2 13.1 85 76-165 117-203 (413)
311 PLN03050 pyridoxine (pyridoxam 55.2 87 0.0019 28.8 8.8 49 75-123 62-117 (246)
312 cd05285 sorbitol_DH Sorbitol d 55.1 94 0.002 29.6 9.6 57 66-124 155-211 (343)
313 PRK07806 short chain dehydroge 55.0 1.3E+02 0.0028 26.8 10.2 70 75-146 8-79 (248)
314 PRK12831 putative oxidoreducta 54.7 50 0.0011 33.4 7.8 55 72-126 279-338 (464)
315 TIGR01751 crot-CoA-red crotony 54.5 74 0.0016 31.2 8.9 55 69-126 185-240 (398)
316 PLN02702 L-idonate 5-dehydroge 54.4 98 0.0021 29.8 9.7 57 67-125 175-231 (364)
317 PF03853 YjeF_N: YjeF-related 54.2 52 0.0011 28.2 6.9 54 73-126 25-87 (169)
318 PRK12859 3-ketoacyl-(acyl-carr 54.1 1.7E+02 0.0037 26.5 14.4 73 75-149 8-94 (256)
319 PRK12938 acetyacetyl-CoA reduc 54.0 1.3E+02 0.0028 26.8 10.0 71 75-147 5-77 (246)
320 PRK08063 enoyl-(acyl carrier p 53.7 1.4E+02 0.003 26.7 10.1 54 75-128 6-61 (250)
321 PRK08643 acetoin reductase; Va 53.6 1.1E+02 0.0024 27.5 9.4 71 75-147 4-75 (256)
322 PRK05786 fabG 3-ketoacyl-(acyl 53.6 89 0.0019 27.7 8.7 32 75-106 7-38 (238)
323 TIGR02415 23BDH acetoin reduct 53.5 1E+02 0.0022 27.7 9.2 72 75-148 2-74 (254)
324 TIGR00692 tdh L-threonine 3-de 53.5 58 0.0013 31.0 7.8 52 71-124 159-210 (340)
325 PRK06138 short chain dehydroge 53.4 1.2E+02 0.0025 27.2 9.6 70 75-147 7-77 (252)
326 PRK05876 short chain dehydroge 53.3 1E+02 0.0022 28.5 9.2 72 75-148 8-80 (275)
327 PRK06198 short chain dehydroge 53.3 1.3E+02 0.0028 27.1 9.9 71 75-147 8-80 (260)
328 PRK06194 hypothetical protein; 53.3 1.2E+02 0.0026 27.9 9.8 71 75-147 8-79 (287)
329 PRK08862 short chain dehydroge 53.2 85 0.0018 28.1 8.5 54 75-128 7-61 (227)
330 PRK08017 oxidoreductase; Provi 53.0 1.7E+02 0.0037 26.2 13.8 50 75-127 4-53 (256)
331 PRK05479 ketol-acid reductoiso 52.9 2.2E+02 0.0048 27.4 11.6 46 75-122 18-63 (330)
332 PRK07035 short chain dehydroge 52.8 1.1E+02 0.0024 27.5 9.3 71 75-147 10-81 (252)
333 PF08704 GCD14: tRNA methyltra 52.8 24 0.00053 32.4 4.7 44 174-219 31-75 (247)
334 cd08288 MDR_yhdh Yhdh putative 52.7 93 0.002 29.1 9.1 49 73-124 146-195 (324)
335 PLN02918 pyridoxine (pyridoxam 52.6 86 0.0019 32.4 9.0 49 75-123 137-192 (544)
336 cd08245 CAD Cinnamyl alcohol d 52.6 97 0.0021 29.2 9.2 54 69-125 158-211 (330)
337 PLN02527 aspartate carbamoyltr 52.5 1.5E+02 0.0033 28.1 10.3 59 68-127 146-210 (306)
338 cd08240 6_hydroxyhexanoate_dh_ 52.4 92 0.002 29.7 9.1 52 70-123 172-223 (350)
339 PRK08278 short chain dehydroge 52.0 1.5E+02 0.0032 27.3 10.1 54 75-128 8-69 (273)
340 PRK12744 short chain dehydroge 52.0 1.1E+02 0.0024 27.6 9.2 71 75-147 10-85 (257)
341 PRK08265 short chain dehydroge 51.9 1.5E+02 0.0032 26.9 10.0 69 75-148 8-77 (261)
342 PRK06720 hypothetical protein; 51.8 1.5E+02 0.0033 25.3 9.7 53 75-127 18-71 (169)
343 PRK08303 short chain dehydroge 51.8 1.3E+02 0.0027 28.5 9.7 73 75-149 10-93 (305)
344 cd05279 Zn_ADH1 Liver alcohol 51.4 83 0.0018 30.4 8.7 54 67-122 177-230 (365)
345 PRK06172 short chain dehydroge 51.4 1.1E+02 0.0024 27.4 9.1 54 75-128 9-63 (253)
346 PRK07231 fabG 3-ketoacyl-(acyl 51.3 1.4E+02 0.0031 26.5 9.8 31 75-105 7-37 (251)
347 TIGR03325 BphB_TodD cis-2,3-di 51.3 1.4E+02 0.0029 27.1 9.7 51 75-128 7-58 (262)
348 PRK06181 short chain dehydroge 51.2 1E+02 0.0022 27.9 8.8 71 75-147 3-74 (263)
349 PRK01683 trans-aconitate 2-met 51.2 32 0.0007 31.5 5.4 50 169-220 17-66 (258)
350 PRK01713 ornithine carbamoyltr 51.2 1E+02 0.0022 29.8 8.9 55 73-127 155-217 (334)
351 cd05281 TDH Threonine dehydrog 51.1 59 0.0013 30.9 7.5 51 72-124 162-212 (341)
352 PRK05866 short chain dehydroge 51.1 1.1E+02 0.0023 28.7 9.1 71 75-147 42-113 (293)
353 smart00822 PKS_KR This enzymat 51.0 1.3E+02 0.0028 24.6 8.9 54 75-128 2-60 (180)
354 TIGR03801 asp_4_decarbox aspar 50.9 3E+02 0.0065 28.4 12.9 53 76-128 157-215 (521)
355 PRK15438 erythronate-4-phospha 50.9 1.4E+02 0.003 29.4 9.9 120 51-197 89-213 (378)
356 PRK05717 oxidoreductase; Valid 50.9 1.3E+02 0.0029 27.1 9.5 70 75-148 12-81 (255)
357 PRK12826 3-ketoacyl-(acyl-carr 50.8 1.2E+02 0.0026 27.0 9.1 70 75-146 8-78 (251)
358 PRK05867 short chain dehydroge 50.7 1.2E+02 0.0026 27.3 9.2 71 75-147 11-82 (253)
359 PRK08217 fabG 3-ketoacyl-(acyl 50.6 1.2E+02 0.0025 27.1 9.0 54 75-128 7-61 (253)
360 cd08246 crotonyl_coA_red croto 50.5 79 0.0017 30.9 8.4 54 69-125 189-243 (393)
361 TIGR01317 GOGAT_sm_gam glutama 50.5 67 0.0015 32.7 8.1 53 73-125 142-212 (485)
362 TIGR01831 fabG_rel 3-oxoacyl-( 50.4 1.6E+02 0.0035 26.1 9.9 70 77-148 2-73 (239)
363 PRK09730 putative NAD(P)-bindi 50.4 1.2E+02 0.0026 27.0 9.1 71 75-147 3-75 (247)
364 PRK08192 aspartate carbamoyltr 50.3 77 0.0017 30.6 7.9 55 73-127 158-218 (338)
365 PRK12429 3-hydroxybutyrate deh 50.2 1.4E+02 0.003 26.8 9.5 71 75-147 6-77 (258)
366 cd05211 NAD_bind_Glu_Leu_Phe_V 50.1 84 0.0018 28.2 7.7 51 56-106 4-55 (217)
367 PRK08354 putative aminotransfe 50.1 1.8E+02 0.0039 27.3 10.5 51 76-128 56-106 (311)
368 PRK08085 gluconate 5-dehydroge 50.1 1.4E+02 0.003 26.9 9.5 71 75-147 11-82 (254)
369 PRK07904 short chain dehydroge 50.0 2E+02 0.0043 26.1 15.7 54 75-128 10-67 (253)
370 PF01081 Aldolase: KDPG and KH 49.9 1.8E+02 0.004 25.6 11.6 113 78-214 39-153 (196)
371 cd08262 Zn_ADH8 Alcohol dehydr 49.8 1.2E+02 0.0026 28.8 9.4 55 66-122 154-208 (341)
372 COG0300 DltE Short-chain dehyd 49.8 2.2E+02 0.0048 26.5 11.3 72 75-148 8-81 (265)
373 PRK00779 ornithine carbamoyltr 49.8 1.6E+02 0.0034 28.0 9.9 60 67-127 146-209 (304)
374 PF03807 F420_oxidored: NADP o 49.7 1.1E+02 0.0023 22.9 8.1 47 77-125 2-52 (96)
375 TIGR01318 gltD_gamma_fam gluta 49.4 67 0.0015 32.5 7.8 53 73-125 140-210 (467)
376 PTZ00377 alanine aminotransfer 49.3 1.7E+02 0.0037 29.7 10.8 89 75-165 139-234 (481)
377 PRK13656 trans-2-enoyl-CoA red 49.2 2.8E+02 0.006 27.5 11.9 56 46-104 14-73 (398)
378 PRK05476 S-adenosyl-L-homocyst 48.9 50 0.0011 33.0 6.6 49 72-123 210-258 (425)
379 cd08254 hydroxyacyl_CoA_DH 6-h 48.9 1.3E+02 0.0027 28.3 9.4 55 68-125 160-214 (338)
380 PRK05718 keto-hydroxyglutarate 48.9 2E+02 0.0043 25.7 14.2 112 79-214 47-160 (212)
381 PRK12825 fabG 3-ketoacyl-(acyl 48.7 1.3E+02 0.0029 26.5 9.1 71 75-147 8-80 (249)
382 PRK08213 gluconate 5-dehydroge 48.6 1.4E+02 0.003 27.0 9.3 71 75-147 14-85 (259)
383 PRK12939 short chain dehydroge 48.6 1.5E+02 0.0031 26.5 9.4 68 75-145 9-78 (250)
384 PRK06348 aspartate aminotransf 48.5 2.7E+02 0.0058 27.1 12.9 85 75-165 90-178 (384)
385 PRK07791 short chain dehydroge 48.5 1.6E+02 0.0034 27.4 9.7 30 75-104 8-37 (286)
386 PRK12769 putative oxidoreducta 48.2 34 0.00073 36.3 5.6 53 73-125 326-396 (654)
387 cd08276 MDR7 Medium chain dehy 48.0 1.4E+02 0.0031 27.9 9.6 53 69-124 156-208 (336)
388 cd06451 AGAT_like Alanine-glyo 47.9 2.3E+02 0.0049 27.0 11.1 88 75-166 51-141 (356)
389 PRK09422 ethanol-active dehydr 47.8 1.1E+02 0.0024 28.8 8.8 56 67-125 156-212 (338)
390 PLN02342 ornithine carbamoyltr 47.8 1.7E+02 0.0037 28.4 9.8 59 67-126 188-250 (348)
391 PRK06113 7-alpha-hydroxysteroi 47.6 1.5E+02 0.0032 26.8 9.2 71 75-147 13-84 (255)
392 PRK07890 short chain dehydroge 47.5 1.4E+02 0.0029 26.9 9.0 54 75-128 7-61 (258)
393 PRK10538 malonic semialdehyde 47.4 1.4E+02 0.003 26.9 9.0 67 76-147 3-70 (248)
394 COG0800 Eda 2-keto-3-deoxy-6-p 47.4 2.1E+02 0.0046 25.6 12.3 125 61-213 30-157 (211)
395 cd08261 Zn_ADH7 Alcohol dehydr 47.4 1.4E+02 0.003 28.3 9.4 53 67-122 153-205 (337)
396 PRK06124 gluconate 5-dehydroge 47.3 1.4E+02 0.0029 26.9 9.0 71 75-147 13-84 (256)
397 TIGR03539 DapC_actino succinyl 47.2 2.7E+02 0.0058 26.7 12.1 78 75-165 81-158 (357)
398 TIGR01316 gltA glutamate synth 47.2 3.1E+02 0.0067 27.5 14.7 52 74-125 133-202 (449)
399 PRK08068 transaminase; Reviewe 47.1 2.8E+02 0.0061 27.0 12.9 110 50-165 70-183 (389)
400 cd05283 CAD1 Cinnamyl alcohol 47.1 1.4E+02 0.0029 28.4 9.3 52 71-125 167-218 (337)
401 PRK13984 putative oxidoreducta 47.0 69 0.0015 33.6 7.7 53 73-125 282-352 (604)
402 PRK06358 threonine-phosphate d 46.8 1.5E+02 0.0032 28.6 9.5 98 75-180 72-171 (354)
403 TIGR03206 benzo_BadH 2-hydroxy 46.7 1.5E+02 0.0032 26.4 9.1 54 75-128 5-59 (250)
404 PRK07792 fabG 3-ketoacyl-(acyl 46.6 1.5E+02 0.0033 27.8 9.4 54 75-128 14-69 (306)
405 PRK07985 oxidoreductase; Provi 46.5 2E+02 0.0044 26.7 10.2 72 75-148 51-125 (294)
406 cd08291 ETR_like_1 2-enoyl thi 46.3 1E+02 0.0022 29.1 8.2 50 74-126 144-194 (324)
407 cd08255 2-desacetyl-2-hydroxye 46.2 1.3E+02 0.0028 27.4 8.8 51 67-120 91-142 (277)
408 PRK08642 fabG 3-ketoacyl-(acyl 46.2 2.1E+02 0.0044 25.5 10.0 52 75-128 7-59 (253)
409 PTZ00354 alcohol dehydrogenase 46.1 1.6E+02 0.0034 27.6 9.5 54 69-125 136-190 (334)
410 cd08293 PTGR2 Prostaglandin re 46.0 1.6E+02 0.0034 27.9 9.6 56 68-126 147-207 (345)
411 PRK05565 fabG 3-ketoacyl-(acyl 46.0 1.7E+02 0.0038 25.8 9.4 71 75-147 7-79 (247)
412 PRK12935 acetoacetyl-CoA reduc 46.0 1.6E+02 0.0035 26.2 9.2 54 75-128 8-63 (247)
413 PTZ00142 6-phosphogluconate de 45.8 3.4E+02 0.0074 27.6 13.4 123 76-219 3-129 (470)
414 PRK02102 ornithine carbamoyltr 45.8 1.1E+02 0.0023 29.6 8.1 59 68-127 150-216 (331)
415 PRK06101 short chain dehydroge 45.7 1E+02 0.0022 27.5 7.9 50 75-127 3-52 (240)
416 PLN02494 adenosylhomocysteinas 45.7 59 0.0013 32.9 6.5 52 69-123 249-300 (477)
417 PRK05993 short chain dehydroge 45.6 2E+02 0.0044 26.3 10.0 50 75-127 6-55 (277)
418 PRK06701 short chain dehydroge 45.5 2.5E+02 0.0053 26.1 10.6 54 75-128 48-103 (290)
419 cd08243 quinone_oxidoreductase 45.5 1.7E+02 0.0037 27.0 9.6 54 69-125 138-192 (320)
420 cd08234 threonine_DH_like L-th 45.4 1.8E+02 0.004 27.2 9.9 54 67-122 153-206 (334)
421 PRK11749 dihydropyrimidine deh 45.4 84 0.0018 31.6 7.8 53 73-125 272-330 (457)
422 PRK06015 keto-hydroxyglutarate 45.3 2.2E+02 0.0048 25.3 13.9 113 78-214 35-149 (201)
423 PRK04284 ornithine carbamoyltr 45.3 1E+02 0.0022 29.7 7.9 58 69-127 151-216 (332)
424 cd08297 CAD3 Cinnamyl alcohol 45.3 1.2E+02 0.0027 28.6 8.7 52 70-124 162-214 (341)
425 PRK02255 putrescine carbamoylt 45.2 1.1E+02 0.0023 29.7 8.1 53 74-126 154-213 (338)
426 PRK09134 short chain dehydroge 45.1 2.2E+02 0.0049 25.6 10.1 54 75-128 11-66 (258)
427 PRK12414 putative aminotransfe 45.1 3E+02 0.0065 26.7 12.5 85 75-165 91-178 (384)
428 PRK00050 16S rRNA m(4)C1402 me 45.0 43 0.00092 31.7 5.2 50 169-220 5-55 (296)
429 TIGR02853 spore_dpaA dipicolin 45.0 2.5E+02 0.0055 26.3 10.5 64 57-123 133-197 (287)
430 cd08278 benzyl_alcohol_DH Benz 44.8 1.4E+02 0.003 28.8 9.1 56 68-125 181-236 (365)
431 PF00107 ADH_zinc_N: Zinc-bind 44.8 52 0.0011 26.1 5.2 39 86-127 3-41 (130)
432 PRK07066 3-hydroxybutyryl-CoA 44.7 78 0.0017 30.3 7.0 32 75-106 8-39 (321)
433 PRK05653 fabG 3-ketoacyl-(acyl 44.2 1.7E+02 0.0038 25.7 9.1 54 75-128 7-61 (246)
434 PRK12562 ornithine carbamoyltr 44.1 80 0.0017 30.5 7.0 55 73-127 155-217 (334)
435 cd05278 FDH_like Formaldehyde 44.0 99 0.0021 29.3 7.8 54 68-123 162-215 (347)
436 TIGR00658 orni_carb_tr ornithi 44.0 2.3E+02 0.005 26.9 10.1 59 68-127 143-208 (304)
437 PRK06949 short chain dehydroge 43.9 1.7E+02 0.0036 26.3 9.0 31 75-105 11-41 (258)
438 PRK03515 ornithine carbamoyltr 43.9 76 0.0017 30.6 6.8 55 73-127 155-217 (336)
439 COG1062 AdhC Zn-dependent alco 43.8 99 0.0021 29.9 7.3 64 63-128 175-238 (366)
440 PRK08637 hypothetical protein; 43.8 3.2E+02 0.0069 26.6 12.7 86 76-165 71-162 (388)
441 PRK06182 short chain dehydroge 43.7 2.5E+02 0.0055 25.5 14.9 67 75-148 5-71 (273)
442 PRK06947 glucose-1-dehydrogena 43.6 1.4E+02 0.003 26.7 8.4 54 75-128 4-59 (248)
443 TIGR00696 wecB_tagA_cpsF bacte 43.3 2.2E+02 0.0048 24.6 9.4 96 86-194 13-112 (177)
444 COG3967 DltE Short-chain dehyd 43.2 2.5E+02 0.0054 25.3 12.3 109 81-194 11-141 (245)
445 PRK08416 7-alpha-hydroxysteroi 43.2 2E+02 0.0043 26.0 9.5 72 75-148 10-84 (260)
446 PRK04870 histidinol-phosphate 43.2 2.3E+02 0.005 27.1 10.3 98 76-179 83-182 (356)
447 PRK05650 short chain dehydroge 43.1 1.6E+02 0.0035 26.8 8.9 53 76-128 3-56 (270)
448 PRK07063 short chain dehydroge 43.0 2.1E+02 0.0046 25.7 9.6 30 75-104 9-38 (260)
449 PRK12749 quinate/shikimate deh 42.9 1.3E+02 0.0029 28.3 8.2 35 73-107 123-157 (288)
450 PF07279 DUF1442: Protein of u 42.8 1.1E+02 0.0024 27.4 7.1 55 65-121 35-94 (218)
451 PRK07814 short chain dehydroge 42.8 1.8E+02 0.0039 26.4 9.1 54 75-128 12-66 (263)
452 PRK07067 sorbitol dehydrogenas 42.6 2.5E+02 0.0055 25.2 10.1 51 75-128 8-59 (257)
453 PRK08594 enoyl-(acyl carrier p 42.4 2.3E+02 0.005 25.7 9.7 72 75-148 9-84 (257)
454 cd05188 MDR Medium chain reduc 42.2 2E+02 0.0044 25.6 9.3 53 69-124 130-182 (271)
455 PLN02712 arogenate dehydrogena 42.1 4.6E+02 0.01 28.0 14.0 119 74-220 369-488 (667)
456 PRK07774 short chain dehydroge 41.8 2.2E+02 0.0048 25.3 9.4 31 75-105 8-38 (250)
457 COG0399 WecE Predicted pyridox 41.7 2.4E+02 0.0051 27.8 9.8 79 43-129 26-104 (374)
458 PRK12748 3-ketoacyl-(acyl-carr 41.6 2.5E+02 0.0054 25.2 9.8 72 75-148 7-92 (256)
459 PLN02514 cinnamyl-alcohol dehy 41.6 1.5E+02 0.0032 28.6 8.6 55 69-125 176-230 (357)
460 PF02737 3HCDH_N: 3-hydroxyacy 41.5 77 0.0017 27.4 6.0 30 77-106 2-31 (180)
461 PRK06077 fabG 3-ketoacyl-(acyl 41.4 1.9E+02 0.0042 25.7 9.0 54 75-128 8-63 (252)
462 TIGR01963 PHB_DH 3-hydroxybuty 41.3 1.7E+02 0.0037 26.1 8.7 70 75-146 3-73 (255)
463 PRK14805 ornithine carbamoyltr 41.2 1.8E+02 0.0039 27.6 8.8 59 68-127 142-207 (302)
464 cd00288 Pyruvate_Kinase Pyruva 41.1 2.2E+02 0.0048 29.0 9.8 48 53-106 359-407 (480)
465 PRK07865 N-succinyldiaminopime 41.0 3.3E+02 0.0072 26.1 11.2 78 75-165 87-164 (364)
466 PRK07392 threonine-phosphate d 40.8 1.7E+02 0.0036 28.2 8.9 88 75-166 75-165 (360)
467 PF13460 NAD_binding_10: NADH( 40.6 1.1E+02 0.0024 25.9 6.9 45 77-126 2-46 (183)
468 PRK01438 murD UDP-N-acetylmura 40.5 1E+02 0.0023 31.1 7.7 51 75-125 17-69 (480)
469 cd08292 ETR_like_2 2-enoyl thi 40.5 1.7E+02 0.0037 27.2 8.8 54 67-123 133-187 (324)
470 PRK00274 ksgA 16S ribosomal RN 40.2 58 0.0013 30.3 5.3 47 170-220 29-75 (272)
471 COG2861 Uncharacterized protei 40.1 3E+02 0.0064 25.2 13.1 204 37-311 28-240 (250)
472 PRK08175 aminotransferase; Val 40.1 3.6E+02 0.0079 26.2 12.9 55 73-129 90-145 (395)
473 PRK08264 short chain dehydroge 40.0 1.3E+02 0.0029 26.6 7.7 48 75-128 8-56 (238)
474 COG2085 Predicted dinucleotide 39.9 2.8E+02 0.006 24.8 9.5 32 75-106 2-33 (211)
475 PF13380 CoA_binding_2: CoA bi 39.8 1.1E+02 0.0025 24.2 6.3 50 75-124 57-106 (116)
476 cd08235 iditol_2_DH_like L-idi 39.8 2.4E+02 0.0051 26.6 9.7 53 68-122 160-212 (343)
477 cd08265 Zn_ADH3 Alcohol dehydr 39.7 1.1E+02 0.0025 29.7 7.6 54 69-124 199-252 (384)
478 cd08205 RuBisCO_IV_RLP Ribulos 39.7 3.7E+02 0.0081 26.3 11.9 68 37-108 159-234 (367)
479 cd08260 Zn_ADH6 Alcohol dehydr 39.7 2E+02 0.0044 27.2 9.3 52 68-122 160-211 (345)
480 TIGR00438 rrmJ cell division p 39.6 58 0.0013 28.2 5.0 49 169-219 14-67 (188)
481 PRK06924 short chain dehydroge 39.5 1.8E+02 0.0039 26.0 8.5 68 75-145 3-70 (251)
482 PRK07677 short chain dehydroge 39.4 2.2E+02 0.0047 25.6 9.0 54 75-128 3-57 (252)
483 PRK07201 short chain dehydroge 39.3 1.7E+02 0.0037 30.8 9.3 73 75-149 373-446 (657)
484 PRK06079 enoyl-(acyl carrier p 39.3 2.8E+02 0.0061 24.9 9.8 30 75-104 9-40 (252)
485 PRK08340 glucose-1-dehydrogena 39.1 1.7E+02 0.0037 26.4 8.3 29 76-104 3-31 (259)
486 PLN02253 xanthoxin dehydrogena 39.1 1.9E+02 0.0042 26.4 8.8 30 75-104 20-49 (280)
487 PRK12778 putative bifunctional 39.1 97 0.0021 33.5 7.5 53 73-125 569-627 (752)
488 smart00650 rADc Ribosomal RNA 39.1 54 0.0012 27.9 4.6 44 173-220 3-46 (169)
489 cd05286 QOR2 Quinone oxidoredu 39.0 2.3E+02 0.005 25.9 9.4 54 68-124 131-185 (320)
490 cd01011 nicotinamidase Nicotin 38.9 1.3E+02 0.0028 26.3 7.1 60 61-124 129-196 (196)
491 PRK08251 short chain dehydroge 38.7 2.4E+02 0.0053 25.0 9.2 71 75-147 4-77 (248)
492 PF02887 PK_C: Pyruvate kinase 38.6 2E+02 0.0042 22.7 8.0 85 55-150 2-88 (117)
493 COG4007 Predicted dehydrogenas 38.6 2.7E+02 0.0059 25.9 8.9 86 86-194 33-120 (340)
494 cd08286 FDH_like_ADH2 formalde 38.5 1.2E+02 0.0026 28.7 7.5 52 68-122 161-213 (345)
495 TIGR00755 ksgA dimethyladenosi 38.5 65 0.0014 29.5 5.3 48 169-220 15-62 (253)
496 PRK07062 short chain dehydroge 38.5 2.6E+02 0.0057 25.2 9.5 31 75-105 10-40 (265)
497 PRK06207 aspartate aminotransf 38.5 3.9E+02 0.0085 26.2 14.2 52 75-128 103-155 (405)
498 cd08267 MDR1 Medium chain dehy 38.3 2E+02 0.0044 26.5 8.9 50 69-122 139-189 (319)
499 PRK08690 enoyl-(acyl carrier p 38.3 2.3E+02 0.0051 25.7 9.1 30 75-104 8-39 (261)
500 cd08264 Zn_ADH_like2 Alcohol d 38.2 1.8E+02 0.0038 27.3 8.5 48 67-121 156-204 (325)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-61 Score=444.06 Aligned_cols=294 Identities=45% Similarity=0.671 Sum_probs=273.6
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
+...+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++||++||++||||+|++||++|+.+
T Consensus 5 ~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~ 84 (300)
T COG0031 5 ILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAK 84 (300)
T ss_pred hHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHc
Confidence 44568999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCCChhhHHhhHHHHH
Q psy14801 97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~~si~g~~~~a~ei 175 (404)
|+++++|||++++.+|+++|++|||+|++++.... .-..+.+++++++++.++ .++.+||.||.|+..||.++|.||
T Consensus 85 Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g--~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 85 GYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG--NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC--chHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 99999999999999999999999999999997332 234567778889988877 666789999999999999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 255 (404)
++|+.+++|++|..+|+|||++|++.+++...|++|+++|+|.+++.+.... ..+.++|++..++|..++.
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~---------g~~~i~GIG~~~ip~~~~~ 233 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE---------GPHKIEGIGAGFVPENLDL 233 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC---------CCcccCCCCCCcCCccccc
Confidence 9999988999999999999999999999999999999999999998765411 5678999999999988888
Q ss_pred cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321 (404)
Q Consensus 256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~ 321 (404)
..+|+++.|+|++++++++++++.+|+++|+|||++++++.+++++..++.+||+|.||.+.+|++
T Consensus 234 ~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 234 DLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLS 299 (300)
T ss_pred ccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccC
Confidence 899999999999999999999999999999999999999999999998899999999999999986
No 2
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.3e-57 Score=430.23 Aligned_cols=303 Identities=39% Similarity=0.590 Sum_probs=264.5
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHH
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~ 95 (404)
+.+.+|+|||++++.++.+.+++||+|+|++|||||||||++.+++..+.++|.+.|| ++||++|+||||+|+|++|+.
T Consensus 9 ~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~ 88 (322)
T PLN02565 9 VTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAA 88 (322)
T ss_pred HHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHH
Confidence 5678999999999988776678999999999999999999999999999999988888 569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||++++..|+++|+.|||+|+.++...++ .+.++.+++++++.++.++++||.||.|+..||.++|+||
T Consensus 89 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~---~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 89 KGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCc---HHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999863222 2346778888887656788899999999888999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 255 (404)
++|+..+||++|+++|+|++++||+.+++...|.+|+|+|+|.+++.+.... ...+.+++++....+..+..
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~--------~~~~~~~glg~~~~~~~~~~ 237 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGK--------PGPHKIQGIGAGFIPGVLDV 237 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCC--------CCCccCCCCCCCCCCCcCCH
Confidence 9999767999999999999999999999999999999999999986653211 11234456665555555555
Q ss_pred cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHh
Q psy14801 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI 330 (404)
Q Consensus 256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~ 330 (404)
..+|+++.|+|.|++++++++++++|+++||+||++++++.+++++. .++.+||++.||++.+|+++.+.+.+..
T Consensus 238 ~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~ 313 (322)
T PLN02565 238 DLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKK 313 (322)
T ss_pred hHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHH
Confidence 67789999999999999999999999999999999999999999875 4577999999999999999988776653
No 3
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.6e-57 Score=436.48 Aligned_cols=318 Identities=34% Similarity=0.437 Sum_probs=267.7
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...+|+|||+++++|+...|++||+|+|++|||||||||++.+++..+.++|.++|+.+|+++||||||+|+|++|+.+|
T Consensus 48 ~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G 127 (423)
T PLN02356 48 IDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYG 127 (423)
T ss_pred HhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 34679999999999998888999999999999999999999999999999998888889999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CCCCC-hhhHHHHHHHHHHh-----------------------
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQND-----KSYDH-PEGMIAGAHRIASQ----------------------- 148 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~-----~~~~~-~~~~~~~a~~l~~~----------------------- 148 (404)
++|+||||+++++.|+++|+.|||+|+.+++. .++.. +......+++++++
T Consensus 128 ~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (423)
T PLN02356 128 CKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEE 207 (423)
T ss_pred CcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 99999999999999999999999999999742 11111 11111234444433
Q ss_pred ---------CCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 149 ---------MKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 149 ---------~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
.++.+|++||.||.+...|+..+|+||++|+..++|++|+++|+||+++|++.+++...|.+||++|+|.+
T Consensus 208 ~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~ 287 (423)
T PLN02356 208 KENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPG 287 (423)
T ss_pred ccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 14568889999999877777778999999998789999999999999999999999999999999999998
Q ss_pred CcccccCC----------CCCCCCCCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801 220 SILAQPQS----------LNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289 (404)
Q Consensus 220 ~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg 289 (404)
+..+.... .+.. ......+.+++++....+..++...+|.++.|+|.|+.++++++++++|+++||+||
T Consensus 288 s~~~~~~~~~~~~~~s~~~G~~-~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssa 366 (423)
T PLN02356 288 SGLFNKVTRGVMYTREEAEGRR-LKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSA 366 (423)
T ss_pred CccccccccchhhhhhhhcCCc-cCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHH
Confidence 86442210 0110 011124667788777666666677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhhcCccC
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD 336 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (404)
++++++.++.++..++.+||+|.||.+.+|++++++++|+.++.+.+
T Consensus 367 a~laaa~~la~~~~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~~~~ 413 (423)
T PLN02356 367 MNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTP 413 (423)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCcchhhhhcCHHHHHhcCCCC
Confidence 99999999887776788999999999999999999999998776643
No 4
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.4e-56 Score=430.59 Aligned_cols=315 Identities=40% Similarity=0.585 Sum_probs=267.6
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
+.+.+|+|||++++++++..|++||+|+|++|||||||||++.+++..++++|.++++++||++|+||||+|+|++|+.+
T Consensus 7 ~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~ 86 (330)
T PRK10717 7 VSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAAR 86 (330)
T ss_pred HHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHc
Confidence 45678999999999999988999999999999999999999999999999999988989999999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChh----hHHHHHHHHHHhC-CCcEeecCCCCCCChhhHHhhH
Q psy14801 97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE----GMIAGAHRIASQM-KNAVVLDQFRNPNNPLSHYETT 171 (404)
Q Consensus 97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~----~~~~~a~~l~~~~-~~~~~~~e~~np~~si~g~~~~ 171 (404)
|++|+||||..+++.|+++++.+||+|+.++.. .+++.. ...+.++++.++. .+.+|+++|.||.+.+.||.++
T Consensus 87 G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 165 (330)
T PRK10717 87 GYKTVIVMPETQSQEKKDLLRALGAELVLVPAA-PYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETT 165 (330)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCc-ccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhH
Confidence 999999999999999999999999999999863 244322 2223344444433 3578889999998878899999
Q ss_pred HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccc
Q psy14801 172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAAT 251 (404)
Q Consensus 172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 251 (404)
|+||++|+..++|++|+++|+||+++|++.+++...|.+||++|+|.+++.+.....+.. .....+.+++++....+.
T Consensus 166 a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~--~~~~~~~~~gl~~~~~~~ 243 (330)
T PRK10717 166 GPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGEL--KAEGSSITEGIGQGRITA 243 (330)
T ss_pred HHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCc--CCCCCcccCcCCCCcCCc
Confidence 999999998679999999999999999999999999999999999999854432111111 012234566666555555
Q ss_pred ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801 252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIE 331 (404)
Q Consensus 252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~ 331 (404)
.+....++.++.|+|.|+.++++.+++++|+++||+||++++++.+++++..++.+||+|.||++.+|++..++|+|+..
T Consensus 244 ~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~ 323 (330)
T PRK10717 244 NLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDFLRE 323 (330)
T ss_pred ccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccCHHHHHh
Confidence 55555678999999999999999999999999999999999999998887777889999999999999999999999986
Q ss_pred cCc
Q psy14801 332 KGF 334 (404)
Q Consensus 332 ~~~ 334 (404)
+.+
T Consensus 324 ~~~ 326 (330)
T PRK10717 324 KGL 326 (330)
T ss_pred cCC
Confidence 654
No 5
>KOG1252|consensus
Probab=100.00 E-value=1.8e-57 Score=412.93 Aligned_cols=308 Identities=46% Similarity=0.733 Sum_probs=284.8
Q ss_pred CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHHcC
Q psy14801 19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
+.+|+|||+.++++..+..++||+|+|.+||+||.|||.++.|+.+|+.+|.+.|| .+++++||||+|.++|++|+..|
T Consensus 48 ~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~G 127 (362)
T KOG1252|consen 48 DLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRG 127 (362)
T ss_pred HHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcC
Confidence 67999999999999888888999999999999999999999999999999999999 67999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+++||++++.+|+.+|++||++|+++|....++.++..++.+.++..+.++.+.++||.||+|+..||++++.||++
T Consensus 128 yk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~ 207 (362)
T KOG1252|consen 128 YKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWR 207 (362)
T ss_pred ceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHH
Confidence 99999999999999999999999999999987777776667889999999999999999999999999999999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (404)
|+.+++|.+|.++|+|||++|++.++++..|+++|++|+|..+....+...+. ..+.++|+|..+.|..++...
T Consensus 208 q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~------~~~~I~GIGyg~~p~~ld~~~ 281 (362)
T KOG1252|consen 208 QLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP------TFHKIQGIGYGFIPTTLDTKL 281 (362)
T ss_pred HhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC------CccceeccccCcCccccchHH
Confidence 99989999999999999999999999999999999999999998765532221 347789999999999999999
Q ss_pred cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEe-cCCCCCccccccchhHHhhc
Q psy14801 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL-ADGVRNYLTKFISDEWMIEK 332 (404)
Q Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~-~~~~~~~~~~~~~~~~~~~~ 332 (404)
++.++.+.+.|+..++++|+.++|+.+|.|||++++++.+.+++.....+++++. |+++++|++++++|+|+...
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~ 357 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEA 357 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998865455666666 99999999999999998654
No 6
>PLN03013 cysteine synthase
Probab=100.00 E-value=3.2e-56 Score=431.25 Aligned_cols=298 Identities=38% Similarity=0.598 Sum_probs=260.7
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a 93 (404)
..+.+.+|+|||++++.+.+..+++||+|+|++|||||||||++.+++..++++|.+.|| .+||++|+||||+|+|++|
T Consensus 115 ~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a 194 (429)
T PLN03013 115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA 194 (429)
T ss_pred HHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHH
Confidence 345678999999999999888888999999999999999999999999999999999998 6799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.+|++++||||+.++..|+++|+.|||+|+.++....+ .+.++.+++++++.++.+|++||.||.|...||.++|+
T Consensus 195 ~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~---~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 195 ASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM---TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCCh---HHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999863222 34567788888876677888999999988789999999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 253 (404)
||++|+..+||++|+++|+||+++|++.+++...|++|||+|||.++..+.... ...+.+++++..+++..+
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~--------~~~~~i~Glg~~~ip~~~ 343 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGK--------PGPHKIQGIGAGFIPKNL 343 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCC--------CCCcccCcccCCcCCHhH
Confidence 999999878999999999999999999999999999999999999986652211 122445677777767777
Q ss_pred CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeE-EEEecCCCCCccccc
Q psy14801 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRC-VVILADGVRNYLTKF 323 (404)
Q Consensus 254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~v-v~v~~~~~~~~~~~~ 323 (404)
+...+|+++.|+|.|++++++++++++|+++|+++|++++++.++.++.. ++..| +++.++++.+|.++.
T Consensus 344 ~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 344 DQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred HHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 76788999999999999999999999999999999999999999887654 35544 667778889998884
No 7
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1e-55 Score=426.51 Aligned_cols=305 Identities=37% Similarity=0.529 Sum_probs=265.1
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a 93 (404)
+.+.+.+|+|||++++++....|++||+|+|++|||||||||++.+++.+++++|.+.|| ++||++|+||||+|+|++|
T Consensus 51 ~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a 130 (368)
T PLN02556 51 TDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMA 130 (368)
T ss_pred hhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHH
Confidence 445678999999999999888889999999999999999999999999999999999988 5799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.+|++|+||||..++..|+++|+.|||+|+.++... .....++.++++.++.++.+|++||.||.|...||.++|+
T Consensus 131 ~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~---~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 131 AMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTK---GMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCC---CccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998522 2224567788888877677888999999987779999999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 253 (404)
||++|....+|++|+++|||||++|++.+++...|++||++|+|.++....... ...+.+.+++....+..+
T Consensus 208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~--------~~~~~i~g~g~~~~p~~~ 279 (368)
T PLN02556 208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGK--------PGPHHITGNGVGFKPDIL 279 (368)
T ss_pred HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCC--------CCCeeeeeccCCCCcccc
Confidence 999998667999999999999999999999999999999999999885432111 111234455545445566
Q ss_pred CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHh
Q psy14801 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI 330 (404)
Q Consensus 254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~ 330 (404)
+...+++++.|+|.|++++++++++++|+++|++||++++++.+++++. .++.+||+|.||.+.+|+++.+.++|..
T Consensus 280 ~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~ 357 (368)
T PLN02556 280 DMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRK 357 (368)
T ss_pred chhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHH
Confidence 6677899999999999999999999999999999999999988887764 3577899999999999999999888864
No 8
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=6.4e-55 Score=437.84 Aligned_cols=315 Identities=57% Similarity=0.908 Sum_probs=273.7
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...+|+|||+++++++...|++||+|+|++|||||||||++.+++.++.++|.+.+|++||++|+||||+|+|++|+.+|
T Consensus 6 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G 85 (454)
T TIGR01137 6 IDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKG 85 (454)
T ss_pred HHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 34579999999999999888899999999999999999999999999999999899999999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+||||+.+++.|+++++.+||+|+.++....+++....++.++++.++.++.+|+++|.||.++..||.++|+||++
T Consensus 86 ~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~ 165 (454)
T TIGR01137 86 YKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILE 165 (454)
T ss_pred CeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999864335555455667888887755667889999999888899999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (404)
|+..+||++|+++|+||+++|++.+++...|.+||++|+|.++.......... .....+.+.+++...++..++...
T Consensus 166 q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~ 242 (454)
T TIGR01137 166 QCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNK---TGRTPYKVEGIGYDFIPTVLDRKV 242 (454)
T ss_pred HhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccC---CCCCCccCCCCCCCCCCCcCCchh
Confidence 99877999999999999999999999999999999999999986443221110 111124456666555555566667
Q ss_pred cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH-hcCCCCeEEEEecCCCCCccccccchhHHhhcCcc
Q psy14801 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK-SLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL 335 (404)
Q Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk-~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~ 335 (404)
.+.++.|++.|++++++.+++++|+++||+||++++|+.++++ ++.++.+||++.||++.+|++++++++|+.++.+.
T Consensus 243 ~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~~ 321 (454)
T TIGR01137 243 VDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGFL 321 (454)
T ss_pred CCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCCc
Confidence 8899999999999999999999999999999999999999888 56778899999999999999999999998876544
No 9
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=5.4e-55 Score=412.08 Aligned_cols=290 Identities=37% Similarity=0.539 Sum_probs=252.0
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..+...+|+|||+++++|....|++||+|+|++|||||||||++.+++.++.++|.+.|+++||++|+||||+|+|++|+
T Consensus 4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~ 83 (296)
T PRK11761 4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAA 83 (296)
T ss_pred ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHH
Confidence 45566789999999999988888899999999999999999999999999999999889999999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||+.+++.|+++|+.+||+|+.++..+++ +++.+.++++.++. +.+|++||.||.++..||.++|+|
T Consensus 84 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 84 IKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGM---EGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 99999999999999999999999999999999963333 34456678887765 568889999999888899999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD 254 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 254 (404)
|++|+..++|.+|+++|+|++++|++.+++...|.+||++|||.++..... +. +......+..++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g--~~-------------~~~~~~~~~~~~ 224 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG--IR-------------RWPEEYLPKIFD 224 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC--CC-------------CCCCCcCCcccC
Confidence 999997679999999999999999999999999999999999998754311 11 111112233344
Q ss_pred ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccccc
Q psy14801 255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI 324 (404)
Q Consensus 255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~ 324 (404)
...+|.++.|+|.|+.++++++++.+|+++||++|++++++.++.++. ++.+||+|.||++.+|+++.+
T Consensus 225 ~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~~~ 293 (296)
T PRK11761 225 ASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN-PNAVIVAIICDRGDRYLSTGV 293 (296)
T ss_pred hhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC-CCCeEEEEECCCCcccCChhc
Confidence 556789999999999999999999999999999999999999877764 677999999999999998743
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.2e-54 Score=410.11 Aligned_cols=293 Identities=44% Similarity=0.609 Sum_probs=255.4
Q ss_pred CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC
Q psy14801 19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 98 (404)
..+|+|||+++++ ....|.+||+|+|++|||||||||++.+++..+.++|.+.+|++||++|+||||+|+|++|+++|+
T Consensus 3 ~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl 81 (298)
T TIGR01139 3 ELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGY 81 (298)
T ss_pred cccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCC
Confidence 4689999999998 556788999999999999999999999999999999988888999999999999999999999999
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 99 ~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
+|+||||+++++.|+++|+.+||+|+.++++ ++ ..+.++.++++.++.++ ++++++|.||.|.+.||.++++||++
T Consensus 82 ~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 158 (298)
T TIGR01139 82 KLILTMPETMSIERRKLLKAYGAELVLTPGA--EG-MKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWR 158 (298)
T ss_pred eEEEEeCCccCHHHHHHHHHcCCEEEEECCC--CC-HHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999873 33 23456678888887654 44779999999899999999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (404)
|+...||++|+|+|+|++++|++.+++...|++|+|+|+|.+++....... ....+++++....+..++...
T Consensus 159 q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~--------~~~~~~gl~~~~~~~~~~~~~ 230 (298)
T TIGR01139 159 DTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKP--------GPHKIQGIGAGFIPKNLNRSV 230 (298)
T ss_pred HhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCC--------CCCCCCCCCCCCCCCccChhh
Confidence 997679999999999999999999999999999999999999865433211 122334555444455555556
Q ss_pred cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
+|.++.|+|.|++++++++++++|+++||+||++++++.++.++..++.+||++.||++.+|+++.
T Consensus 231 ~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~~ 296 (298)
T TIGR01139 231 IDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLSTP 296 (298)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCcc
Confidence 789999999999999999999999999999999999999998877678899999999999998864
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.8e-54 Score=407.57 Aligned_cols=286 Identities=36% Similarity=0.537 Sum_probs=249.7
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...+|+|||+++++++...|++||+|+|++|||||||||++.+++..+.++|.+.|+++||++|+||||+|+|++|+.+|
T Consensus 3 ~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G 82 (290)
T TIGR01138 3 EQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKG 82 (290)
T ss_pred HHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcC
Confidence 34689999999999998888999999999999999999999999999999999889999999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+||||+.+++.|+++|+.+||+|+.++.+.++ +.+.+.++++.++.+. +|++||.||.++..||.++|+||++
T Consensus 83 ~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~---~~~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~t~~~Ei~~ 158 (290)
T TIGR01138 83 YRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGM---EGARDLALELANRGEG-KLLDQFNNPDNPYAHYTSTGPEIWQ 158 (290)
T ss_pred CeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHHhCCC-CCCCccCCcccHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999863223 3456778888887644 5789999999888889999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (404)
|+..++|.+|+++|+|++++|++.+++...|++|||+|+|.++..... + .+++..+.+..++...
T Consensus 159 q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g--~-------------~~~~~~~~~~~~~~~~ 223 (290)
T TIGR01138 159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG--I-------------RRWPTEYLPGIFDASL 223 (290)
T ss_pred HcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC--C-------------CCCCCCcCCcccChhh
Confidence 998779999999999999999999999999999999999998754211 1 0111122222334456
Q ss_pred cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
+|+++.|+|.|+..+++++++++|+++|+++|++++++.++++++ ++.+||+|.||++.+|+++.
T Consensus 224 ~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~~ 288 (290)
T TIGR01138 224 VDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICDRGDRYLSTG 288 (290)
T ss_pred CcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC-CCCeEEEEECCCCccccCcc
Confidence 789999999999999999999999999999999999999987775 67899999999999999874
No 12
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=3.7e-54 Score=408.48 Aligned_cols=293 Identities=44% Similarity=0.645 Sum_probs=255.9
Q ss_pred CCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe
Q psy14801 20 VPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99 (404)
Q Consensus 20 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~ 99 (404)
.+|+|||++++.|++..|++||+|+|++|||||||+|++.+++..+.++|.+.++++|+++|+||||+|+|++|+.+|++
T Consensus 4 ~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~ 83 (299)
T TIGR01136 4 LIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYK 83 (299)
T ss_pred ccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCc
Confidence 57899999999999988899999999999999999999999999999999888889999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT 179 (404)
Q Consensus 100 ~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~ 179 (404)
|+||||+.+++.|+++|+.+||+|+.++++.++ +++++.+++++++.++++++++|.||.+.+.||.++++||++|+
T Consensus 84 ~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 84 LILTMPETMSLERRKLLRAYGAELILTPAEEGM---KGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred EEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999863222 34567788888876456788999999988899999999999999
Q ss_pred CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccC
Q psy14801 180 GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259 (404)
Q Consensus 180 ~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (404)
..+||++|+++|+|++++|++.+++...|.+|+++|+|.+++........ .....+++....+..++...++
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~d 232 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPG--------PHKIQGIGAGFIPKILDLSLID 232 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCC--------CccCCCCCCCCCCccCChhhCC
Confidence 86799999999999999999999999999999999999998655432111 1122334444445555566778
Q ss_pred cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccc
Q psy14801 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 260 ~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~ 323 (404)
.++.|+|+|++++++++++.+|+++||+||++++++.++.++. .++.+||++.||.+.+|.+++
T Consensus 233 ~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~ 297 (299)
T TIGR01136 233 EVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTG 297 (299)
T ss_pred EEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCcc
Confidence 9999999999999999999999999999999999999988764 347899999999999998864
No 13
>PLN00011 cysteine synthase
Probab=100.00 E-value=7.2e-54 Score=409.56 Aligned_cols=302 Identities=37% Similarity=0.562 Sum_probs=262.5
Q ss_pred CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHHcC
Q psy14801 19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
+.+|+|||++++++....|.+||+|+|++|||||||||++.+++..++++|.+.|+ ++||++|+||||+|+|++|+.+|
T Consensus 13 ~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G 92 (323)
T PLN00011 13 ELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARG 92 (323)
T ss_pred HHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcC
Confidence 46899999999998877778999999999999999999999999999999998888 78999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+||||..+++.|+++++.+||+|+.++.+ ++ ..+.++.++++.++.++++++++|.||.|+..||.++|+||++
T Consensus 93 ~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~-~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~ 169 (323)
T PLN00011 93 YKVILVMPSTMSLERRIILRALGAEVHLTDQS--IG-LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169 (323)
T ss_pred CeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--cC-hHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999863 33 2345667888888766678889999999887799999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (404)
|+..+||++|+++|+|||++|++.+++...|..|+|+|+|.++..+.... ...+.+++++....+..++...
T Consensus 170 q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~--------~~~~~~~gl~~~~~~~~~~~~~ 241 (323)
T PLN00011 170 DSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQ--------PGPHLIQGIGSGIIPFNLDLTI 241 (323)
T ss_pred hcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCC--------CCCCCCCCCCCCCCCcccChhh
Confidence 98767999999999999999999999999999999999999986543211 1123455565544455455566
Q ss_pred cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIE 331 (404)
Q Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~~ 331 (404)
+|+++.|+|.|++++++++++++|+++|+++|++++++.+.+++. .++.+||+|.|+++.+|.++.+.+.|...
T Consensus 242 ~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~ 316 (323)
T PLN00011 242 VDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYE 316 (323)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHh
Confidence 789999999999999999999999999999999999999987764 35778999999999999999887777653
No 14
>KOG1481|consensus
Probab=100.00 E-value=8.2e-55 Score=383.63 Aligned_cols=317 Identities=34% Similarity=0.466 Sum_probs=271.2
Q ss_pred CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC
Q psy14801 19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~ 98 (404)
-.+|+|||+++++|++..||+|+.|.|++||.||.|||.|++++..|+++|++-||.+|++.|+||+|+++|..|..+|+
T Consensus 45 ~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gy 124 (391)
T KOG1481|consen 45 GAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGY 124 (391)
T ss_pred HhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC------cEeecCCCCCCChhhHHhhHH
Q psy14801 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN------AVVLDQFRNPNNPLSHYETTA 172 (404)
Q Consensus 99 ~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~------~~~~~e~~np~~si~g~~~~a 172 (404)
+|+|+||++.+.+|.+.++.+||+|+.|+.. .+.+....++.|++.+.+.+. .+|.+||.|++|+..||.+++
T Consensus 125 k~~I~mPddqs~eK~~ile~LGA~V~rV~pa-~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTG 203 (391)
T KOG1481|consen 125 KCHIYMPDDQSQEKSDILEFLGAEVHRVPPA-PIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTG 203 (391)
T ss_pred ceEEECCChHHHHHHHHHHHhcceeeecCCc-CccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcC
Confidence 9999999999999999999999999999974 566677777777776654322 367799999999999999999
Q ss_pred HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCC-cEEEEEcCCCCccccc---------CCCCCCCCCCCcccccc
Q psy14801 173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-CKLVGADPFGSILAQP---------QSLNDVPENQISYNEVE 242 (404)
Q Consensus 173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~-~~vi~V~p~~~~~~~~---------~~~~~~~~~~~~~~~~~ 242 (404)
+||+.|..++.|.++..+|+|||++|++.+++.+.++ +.+...+|.++-.+.. .+..........++..+
T Consensus 204 PEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~E 283 (391)
T KOG1481|consen 204 PEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITE 283 (391)
T ss_pred cHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhh
Confidence 9999999999999999999999999999999999988 8899999999843211 11111111223456677
Q ss_pred CCCCccccccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc
Q psy14801 243 GIGYSFAATTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320 (404)
Q Consensus 243 ~i~~~~~~~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~ 320 (404)
|++...+..++ ...+.|..+.++|+++..+.+.|..++|+|+|
T Consensus 284 GIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvG----------------------------------- 328 (391)
T KOG1481|consen 284 GIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVG----------------------------------- 328 (391)
T ss_pred cccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEec-----------------------------------
Confidence 77776665555 34567888899999998877777666655544
Q ss_pred ccccchhHHhhcCccCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCC
Q psy14801 321 TKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD 395 (404)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~ 395 (404)
.||..|++||+++|+.++||++||||+||+|.||+|++|++.+++.+++.+
T Consensus 329 ------------------------sSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 329 ------------------------SSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFSESFLESKKLSP 379 (391)
T ss_pred ------------------------chhhHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhcCHHHHhhcCCCc
Confidence 456668899999999999999999999999999999999999999999865
No 15
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=6.4e-53 Score=398.93 Aligned_cols=290 Identities=50% Similarity=0.757 Sum_probs=254.6
Q ss_pred CCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEE
Q psy14801 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101 (404)
Q Consensus 22 g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~ 101 (404)
|+|||+++++|++..|++||+|+|++|||||||+|++.+++..+.++|..+++++|+++|+||||+|+|++|+++|++|+
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 68999999999988889999999999999999999999999999999987788899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCCC-CChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhC
Q psy14801 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSY-DHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTG 180 (404)
Q Consensus 102 iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~-~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~ 180 (404)
||||..+++.|+++++.+||+|+.++.. + +..+++.+.++++.++.++++|+++|.||.+...|+.++++||++|+.
T Consensus 81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~ 158 (291)
T cd01561 81 IVMPETMSEEKRKLLRALGAEVILTPEA--EADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLD 158 (291)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEeCCC--CcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999873 3 234556677888887765688889999998765555699999999998
Q ss_pred CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccCc
Q psy14801 181 GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260 (404)
Q Consensus 181 ~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (404)
+.||++|+++|+|++++|++.+++...|.++||+|+|.+++.+... ......+.+++....+..++..+.+.
T Consensus 159 ~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~--------~~~~~~~~gi~~~~~~~~~~~~~~~~ 230 (291)
T cd01561 159 GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGG--------PPGPHKIEGIGAGFIPENLDRSLIDE 230 (291)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCC--------CCCCCcCCCCCCCCCCCccCchhCce
Confidence 7799999999999999999999999999999999999998765111 11223445666555555566667899
Q ss_pred EEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321 (404)
Q Consensus 261 ~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~ 321 (404)
++.|+|.|++++++.+++++|+++||+||.+++++.++.++..++.+||+|.||++.+|++
T Consensus 231 ~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 231 VVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291 (291)
T ss_pred eEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence 9999999999999999999999999999999999999887766788999999999999864
No 16
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=378.27 Aligned_cols=292 Identities=22% Similarity=0.283 Sum_probs=244.9
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
....-+|||+.++.|++.+|++||+|+|++||+||||.||+++.++...+.+..+ ..||++|+||||+++|++|+++|
T Consensus 20 ~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~--~gViaaSaGNHaQGvA~aa~~lG 97 (347)
T COG1171 20 KGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERA--AGVIAASAGNHAQGVAYAAKRLG 97 (347)
T ss_pred hCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhc--CceEEecCCcHHHHHHHHHHHhC
Confidence 3344599999999999999999999999999999999999999998875333222 56999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++++||||.++|..|.+.++.|||+|++++. +||+ +.+.+++++++. +..|+++|++|. .+.|+.|+|+||++
T Consensus 98 i~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dd---a~~~a~~~a~~~-G~~~i~pfD~p~-viAGQGTi~lEile 170 (347)
T COG1171 98 IKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDD---AYAAAEELAEEE-GLTFVPPFDDPD-VIAGQGTIALEILE 170 (347)
T ss_pred CCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHH---HHHHHHHHHHHc-CCEEeCCCCCcc-eeecccHHHHHHHH
Confidence 9999999999999999999999999999986 5654 466799999887 678899999997 89999999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCC-CCCccccccCCCCcc---cccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPE-NQISYNEVEGIGYSF---AATT 252 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~~~---~~~~ 252 (404)
|+...||.+|||+|+||+++||+.+++...|.+|||+|+|++++.+...- .+.... .....+.++|+.... .+..
T Consensus 171 q~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~ 250 (347)
T COG1171 171 QLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFE 250 (347)
T ss_pred hccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHH
Confidence 99866899999999999999999999999999999999999987543211 111111 112344555654332 2233
Q ss_pred cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801 253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318 (404)
Q Consensus 253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~ 318 (404)
+.+.++|+++.|+|.|+..+++.++++++++++|+++.+++++.++..+..++.+|++|.+|+...
T Consensus 251 i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~ilSGgN~d 316 (347)
T COG1171 251 ILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSGGNID 316 (347)
T ss_pred HHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhhcCCCeEEEEecCCCCC
Confidence 456788999999999999999999999999999999999999998877644566699999988643
No 17
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=6.2e-50 Score=383.51 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=245.8
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.+. ++||++|+||||+|+|++|+.+
T Consensus 17 i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~--~~vv~~SsGN~g~alA~~a~~~ 94 (338)
T PRK06608 17 IKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP--DKIVAYSTGNHGQAVAYASKLF 94 (338)
T ss_pred HhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC--CeEEEECCCHHHHHHHHHHHHc
Confidence 44567899999999999988999999999999999999999999999999988743 5899999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801 97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL 176 (404)
Q Consensus 97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~ 176 (404)
|++|+||||..+++.|+++++.+||+|+.++. . ++..+.+++ .++ ++.||+++|.||.+ +.|+.++++||+
T Consensus 95 G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~---~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~ 165 (338)
T PRK06608 95 GIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---R---QEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEAL 165 (338)
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---H---HHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHH
Confidence 99999999999999999999999999999974 2 234555666 443 46788999999974 678999999999
Q ss_pred HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCC-CCCccccccCCCCccccc-cc
Q psy14801 177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPE-NQISYNEVEGIGYSFAAT-TL 253 (404)
Q Consensus 177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~~~-~~ 253 (404)
+|+..+||++|+++|+|++++|++.+++...+.++||+|+|.+++..... ..+.... .....+..++++.+.... .+
T Consensus 166 ~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~ 245 (338)
T PRK06608 166 QQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTF 245 (338)
T ss_pred HhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHH
Confidence 99987799999999999999999999999999999999999988532110 0011000 011123344443322111 11
Q ss_pred C-ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC--CCccccccchhHHh
Q psy14801 254 D-RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMI 330 (404)
Q Consensus 254 ~-~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~--~~~~~~~~~~~~~~ 330 (404)
. ....|.++.|+|.|+..+++.+++++|+++||++|++++++.+++++..++.+||+|.||+. .+++.+.+.+.|+.
T Consensus 246 ~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~ 325 (338)
T PRK06608 246 EYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSGGNIDPILYNELWKEDYLT 325 (338)
T ss_pred HHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCCCccCHHHHHHHHHHhhhc
Confidence 1 12357889999999999999999999999999999999999998877667889999999976 56677777777754
Q ss_pred h
Q psy14801 331 E 331 (404)
Q Consensus 331 ~ 331 (404)
.
T Consensus 326 ~ 326 (338)
T PRK06608 326 I 326 (338)
T ss_pred C
Confidence 3
No 18
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.5e-49 Score=383.40 Aligned_cols=292 Identities=21% Similarity=0.265 Sum_probs=237.4
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
+++++++|+|||+++++|+...|++||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~~vV~aSsGN~G~AlA~~aa 95 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----EAVICASTGNTSAAAAAYAT 95 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHHH
Confidence 45778999999999999988888899999999999999999999999999999986 78999999999999999999
Q ss_pred HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
.+|++|+||||+. .+..|+++|+.|||+|+.+++ +++ ++.+.+++++++. +.++.+ +.||.+ +.||.++++
T Consensus 96 ~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~ 167 (351)
T PRK06352 96 RAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFD---EALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAF 167 (351)
T ss_pred HcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHH
Confidence 9999999999997 589999999999999999986 343 4466788888764 344444 568875 578899999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCC-----cEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcc
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-----CKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF 248 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~-----~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 248 (404)
||++|+...||++|+|+|+|++++|++.+|+...|. .|||+|+|.+++.......... ......++....
T Consensus 168 EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~-----~~~ia~~l~~~~ 242 (351)
T PRK06352 168 EICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDN-----PETIATAIRIGN 242 (351)
T ss_pred HHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCC-----CCcceeEEEeCC
Confidence 999999867999999999999999999999998776 7999999998864322111110 111112211111
Q ss_pred ccccc--C----ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcc
Q psy14801 249 AATTL--D----RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL 320 (404)
Q Consensus 249 ~~~~~--~----~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~ 320 (404)
+..+ . +...+..+.|+|.|+.++++++++++|++++|++|++++++.+++++ ..++.+||++.||++.+|.
T Consensus 243 -~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~ 321 (351)
T PRK06352 243 -PASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDP 321 (351)
T ss_pred -CCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCCh
Confidence 1111 0 11223478999999999999999999999999999999999998874 4567789999999999887
Q ss_pred cccc
Q psy14801 321 TKFI 324 (404)
Q Consensus 321 ~~~~ 324 (404)
+...
T Consensus 322 ~~~~ 325 (351)
T PRK06352 322 DTAM 325 (351)
T ss_pred HHHH
Confidence 7553
No 19
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.6e-49 Score=388.09 Aligned_cols=304 Identities=22% Similarity=0.207 Sum_probs=245.0
Q ss_pred ccCCCCCCC---------cCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEE
Q psy14801 8 SNSARNSPF---------TPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI 77 (404)
Q Consensus 8 ~~~~~~~~~---------~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~v 77 (404)
...||+.+| +++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.++|. ++|
T Consensus 55 ~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~~v 130 (394)
T PRK08197 55 ANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV----KHL 130 (394)
T ss_pred cchhcchhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC----CEE
Confidence 457777655 4578999999999999888884 99999999999999999999999999999987 789
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC
Q psy14801 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157 (404)
Q Consensus 78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e 157 (404)
|++|+||+|+|+|++|+.+|++|+||||.+++..|+++++.+||+|+.+++ +++ +..+.+++++++. ++++.++
T Consensus 131 v~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~---~~~~~a~~~~~~~-g~~~~~~ 204 (394)
T PRK08197 131 AMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LIS---DAGKIVAEAVAEY-GWFDVST 204 (394)
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CcccccC
Confidence 999999999999999999999999999999999999999999999999986 343 3456677777765 5777889
Q ss_pred CCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCcccccC-CC
Q psy14801 158 FRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQPQ-SL 228 (404)
Q Consensus 158 ~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~~-~~ 228 (404)
+.||.+ +.|+.++|+||++|+.++ ||++|+|+|+|++++|++.+|+.. .+..|+++|||+++..+... ..
T Consensus 205 ~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~ 283 (394)
T PRK08197 205 LKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEE 283 (394)
T ss_pred CCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHc
Confidence 999984 688999999999999854 999999999999999999999986 36789999999988543211 01
Q ss_pred CCC--CCCCCccccccCCCCcccc---ccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh
Q psy14801 229 NDV--PENQISYNEVEGIGYSFAA---TTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS 301 (404)
Q Consensus 229 ~~~--~~~~~~~~~~~~i~~~~~~---~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~ 301 (404)
+.. .......+...++...... ..+ .+...+..+.|+|+|+.++++++++++|++++|++|++++|+.++.++
T Consensus 284 g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~ 363 (394)
T PRK08197 284 GKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRES 363 (394)
T ss_pred CCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHc
Confidence 100 0000111222232111110 011 123456779999999999999999999999999999999999998875
Q ss_pred --cCCCCeEEEEecCCCCCcccc
Q psy14801 302 --LRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 302 --~~~~~~vv~v~~~~~~~~~~~ 322 (404)
..++.+||++.||++.+|.+.
T Consensus 364 ~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 364 GWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred CCcCCCCcEEEEeCCCCcCchhh
Confidence 456889999999999988654
No 20
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=3.2e-49 Score=376.10 Aligned_cols=289 Identities=20% Similarity=0.256 Sum_probs=237.4
Q ss_pred CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEE
Q psy14801 23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102 (404)
Q Consensus 23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i 102 (404)
+|||++++++++.+|++||+|+|++|||||||||++.+++.++.++|. .++++||++|+||||.|+|++|+.+|++|+|
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 79 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECVHVVCSSGGNAGLAAAYAARKLGVPCTI 79 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 699999999988888899999999999999999999999999999885 4558999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-
Q psy14801 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG- 181 (404)
Q Consensus 103 v~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~- 181 (404)
|||..+++.|+++|+.+||+|+.++.+ .+ +...+.+++++++.++.+|+++|.||.+ +.||.++++||++|+.+
T Consensus 80 v~p~~~~~~k~~~l~~~GA~v~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~ 154 (316)
T cd06448 80 VVPESTKPRVVEKLRDEGATVVVHGKV-WW---EADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQ 154 (316)
T ss_pred EECCCCCHHHHHHHHHcCCEEEEECCc-hH---HHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHcccc
Confidence 999999999999999999999999862 12 2344567777776546789999999985 57789999999999986
Q ss_pred -CcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcccccc-c--Cc
Q psy14801 182 -KVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFAATT-L--DR 255 (404)
Q Consensus 182 -~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~--~~ 255 (404)
.||++|+|+|+|++++|++.+|+... |.+++|+|+|.+++.+... ..+.........+.+.+++....+.. + ..
T Consensus 155 ~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~ 234 (316)
T cd06448 155 EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQ 234 (316)
T ss_pred CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHH
Confidence 59999999999999999999999986 9999999999998543221 11110001112244556655544322 2 22
Q ss_pred cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH----HH---hcCCCCeEEEEecCCCC
Q psy14801 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA----AK---SLRPDQRCVVILADGVR 317 (404)
Q Consensus 256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~----lk---~~~~~~~vv~v~~~~~~ 317 (404)
...+.++.|+|.|++++++++++.+|+++||+||.+++++.+. ++ +..++.+||++.||+..
T Consensus 235 ~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~ 303 (316)
T cd06448 235 EHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSN 303 (316)
T ss_pred hcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCC
Confidence 3467899999999999999999999999999999999999852 22 35678899999999864
No 21
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=7.4e-49 Score=379.06 Aligned_cols=299 Identities=23% Similarity=0.266 Sum_probs=240.4
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
+.+.+.+|+|||++++++++..|++||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+
T Consensus 20 ~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~~vV~aSsGN~G~alA~~aa 95 (352)
T PRK06721 20 PDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS----EAIICASTGNTSASAAAYAA 95 (352)
T ss_pred CccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHHH
Confidence 34557899999999999988888899999999999999999999999999999987 79999999999999999999
Q ss_pred HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
.+|++|+||||.. .++.|+++|+.+||+|+.+++ +++ ++.+.+++++++. +.++. ++.||.+ +.||.++++
T Consensus 96 ~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~-~~~n~~~-~~G~~t~~~ 167 (352)
T PRK06721 96 RLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFD---DALKAVRNIAAEE-PITLV-NSVNPYR-IEGQKTAAF 167 (352)
T ss_pred HCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhC-Cceec-cCCCchh-hhhhhhHHH
Confidence 9999999999997 478999999999999999986 344 3456678888765 34444 4668864 678899999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHH----HHHHHHhC-CCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcc
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGI----GRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF 248 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi----~la~~~~~-~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 248 (404)
||++|+...||++|+++|+|++++|+ +.+++... |..|+|+|+|++++......... ...+...++....
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~-----~~~tia~~l~~~~ 242 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVID-----EPETIATAIRIGN 242 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCC-----CCCceeeccccCC
Confidence 99999986799999999999999985 44555553 88999999999886433221111 0111222222111
Q ss_pred c---cccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCccc
Q psy14801 249 A---ATTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLT 321 (404)
Q Consensus 249 ~---~~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~ 321 (404)
. ...+ .+...+.++.|+|.|+.++++++++.+|+++||++|++++++.++.++ ..++.+||++.||++.+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~ 322 (352)
T PRK06721 243 PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPD 322 (352)
T ss_pred CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchH
Confidence 0 0001 123567889999999999999999999999999999999999998764 46788999999999999988
Q ss_pred cccchhHHh
Q psy14801 322 KFISDEWMI 330 (404)
Q Consensus 322 ~~~~~~~~~ 330 (404)
...++.|..
T Consensus 323 ~~~~~~~~~ 331 (352)
T PRK06721 323 IAISSNTLD 331 (352)
T ss_pred HHhhhccCC
Confidence 877677743
No 22
>PLN02970 serine racemase
Probab=100.00 E-value=2.6e-49 Score=378.95 Aligned_cols=290 Identities=21% Similarity=0.261 Sum_probs=234.5
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
+...+++|||++++++++.+|++||+|+|++|||||||||++.+++..+.+++.. ++||++|+||||+|+|++|+.+
T Consensus 21 i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~~~ 97 (328)
T PLN02970 21 IAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAE---KGVVTHSSGNHAAALALAAKLR 97 (328)
T ss_pred HhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcC---CeEEEECCcHHHHHHHHHHHHc
Confidence 4456799999999999988889999999999999999999999999988755431 6799999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801 97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL 176 (404)
Q Consensus 97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~ 176 (404)
|++|+||||+.+++.|+++|+.+||+|+.++. +++ .+.+.+++++++ ++.+|+++|.||. .+.|+.++|+||+
T Consensus 98 G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~la~~-~g~~~~~~~~n~~-~~~g~~t~g~Ei~ 170 (328)
T PLN02970 98 GIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVE---SREAVAARVQQE-TGAVLIHPYNDGR-VISGQGTIALEFL 170 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHH---HHHHHHHHHHHh-cCCEEeCCCCCcc-hhhehHHHHHHHH
Confidence 99999999999999999999999999999986 333 445668888876 4678899999997 5678999999999
Q ss_pred HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcc--ccccc
Q psy14801 177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSF--AATTL 253 (404)
Q Consensus 177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~~~~~ 253 (404)
+|+. .||++|+++|+|++++|++.+++...|.+|||+|+|.+++.+... ..+.........+...+++... .....
T Consensus 171 ~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~ 249 (328)
T PLN02970 171 EQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPV 249 (328)
T ss_pred Hhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHH
Confidence 9997 699999999999999999999999999999999999998643211 0111000111123334433221 11112
Q ss_pred CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc---CC-CCeEEEEecCCCC
Q psy14801 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL---RP-DQRCVVILADGVR 317 (404)
Q Consensus 254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~---~~-~~~vv~v~~~~~~ 317 (404)
.....++++.|+|.|+.++++++++++|+++||++|++++++.+.+.+. .+ +.+|+++.||+..
T Consensus 250 ~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~ 317 (328)
T PLN02970 250 VRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNV 317 (328)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCCCC
Confidence 2456789999999999999999999999999999999999977644331 12 4789999999754
No 23
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.7e-49 Score=389.83 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=246.5
Q ss_pred ccCCCCCCCc--------CCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEE
Q psy14801 8 SNSARNSPFT--------PTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV 78 (404)
Q Consensus 8 ~~~~~~~~~~--------~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv 78 (404)
...||+++++ ++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.+.|. ++|+
T Consensus 66 ~~~wry~~~lp~~~~~~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~~vv 141 (421)
T PRK07591 66 KSIWRYRDLLPVPADNPVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----TTVA 141 (421)
T ss_pred cchhcchhhCccccCCCCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----CEEE
Confidence 4577776654 578999999999999988885 99999999999999999999999999999997 7899
Q ss_pred ecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCC
Q psy14801 79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158 (404)
Q Consensus 79 ~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~ 158 (404)
++|+||||+|+|++|+++|++|+||||..++..|+.+++.|||+|+.+++ +|+ +..+.+++++++.+++++.+++
T Consensus 142 ~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d---~a~~~a~~~~~~~~~~~~~n~~ 216 (421)
T PRK07591 142 CASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYD---DVNRLCSELANEHEGWGFVNIN 216 (421)
T ss_pred EeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhcCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999986 354 3466788888766466777887
Q ss_pred CCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCccccc-CCCC
Q psy14801 159 RNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQP-QSLN 229 (404)
Q Consensus 159 ~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~-~~~~ 229 (404)
.||. .+.|+.++++||++|+.++ ||++|+|+|+|++++|++.+|+.. .+..|+++|||+++..... ...+
T Consensus 217 ~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g 295 (421)
T PRK07591 217 LRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEG 295 (421)
T ss_pred CCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcC
Confidence 7886 5789999999999999855 999999999999999999999987 5778999999998643321 1111
Q ss_pred CCCCC-CCccccccCCCCcccc-----cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--
Q psy14801 230 DVPEN-QISYNEVEGIGYSFAA-----TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-- 301 (404)
Q Consensus 230 ~~~~~-~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-- 301 (404)
..... ....+...++...... ....+...+.++.|+|.|+.++++++++.+|++++|++|.+++|+.++.++
T Consensus 296 ~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~ 375 (421)
T PRK07591 296 RDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGK 375 (421)
T ss_pred CCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCC
Confidence 10000 0011222332111110 011233456789999999999999999999999999999999999998874
Q ss_pred cCCCCeEEEEecCCCCCcccc
Q psy14801 302 LRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 302 ~~~~~~vv~v~~~~~~~~~~~ 322 (404)
+.++.+||++.||++.++...
T Consensus 376 i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 376 IDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred CCCCCeEEEEeCCCccCCHHH
Confidence 567889999999988876543
No 24
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=8.9e-49 Score=390.87 Aligned_cols=289 Identities=22% Similarity=0.251 Sum_probs=239.4
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...+++|||+++++|++.+|++||+|+|++|||||||+|+|++++..+.+... + ..||++|+||||+++|++|+.+|
T Consensus 32 ~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~-~--~GVV~aSaGNha~gvA~aA~~lG 108 (521)
T PRK12483 32 YDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL-A--RGVITASAGNHAQGVALAAARLG 108 (521)
T ss_pred hhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh-c--CcEEEECCCHHHHHHHHHHHHhC
Confidence 35678999999999999999999999999999999999999999987753321 1 45999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+||||..++..|+++++.|||+|++++. +|+ ++++.+.+++++. +.+|+++|+||. .+.|+.++|+||++
T Consensus 109 i~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d---~a~~~A~~la~e~-g~~~v~pfdd~~-viaGqgTig~EI~e 181 (521)
T PRK12483 109 VKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFP---DALAHALKLAEEE-GLTFVPPFDDPD-VIAGQGTVAMEILR 181 (521)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCeeeCCCCChH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999975 454 4567788888876 578889999997 67899999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---ATTL 253 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~~~ 253 (404)
|++..||++|+|+|+||+++|++.+++...|.+|||+|+|++++.+.... .+.........+.+++++.... +..+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 99867999999999999999999999999999999999999986543211 1110001112233444432221 1122
Q ss_pred CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCC
Q psy14801 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGV 316 (404)
Q Consensus 254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~ 316 (404)
...++|.++.|+|.|+..+++.+++.++++++|++|.+++|+.++.++.. ++.+||+|.+|++
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgN 325 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGAN 325 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 35678999999999999999999999999999999999999998876532 5789999999986
No 25
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.4e-48 Score=378.07 Aligned_cols=292 Identities=21% Similarity=0.251 Sum_probs=238.0
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a 93 (404)
++++++++|+|||+++++|+...|++||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+++|++|
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHH
Confidence 455788999999999999988788899999999999999999999999999999886 7899999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHH
Q psy14801 94 AIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTA 172 (404)
Q Consensus 94 ~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a 172 (404)
+.+|++|+||||+. .+..|+++|+.+||+|+.+++ .++ ++.+.++++.++.+ .++.+ +.||.+ +.||.+++
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~l~~~~~-~~~~~-~~n~~~-~~g~~t~~ 169 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFD---DALEIVRELAEKYP-VTLVN-SVNPYR-IEGQKTAA 169 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhcC-ceecC-CCCchh-hhhHHHHH
Confidence 99999999999997 689999999999999999986 344 34566788877654 55555 468875 57889999
Q ss_pred HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC
Q psy14801 173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY 246 (404)
Q Consensus 173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 246 (404)
+||++|+...||.+|+++|+||+++|++.+++...+ ..|+|+|+|.++..+....... ...+...++..
T Consensus 170 ~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~-----~~~ti~~~l~~ 244 (353)
T PRK07409 170 FEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVK-----NPETIATAIRI 244 (353)
T ss_pred HHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCC-----CCcceeeeeec
Confidence 999999976799999999999999999999987633 4799999999875432211111 01112222221
Q ss_pred ccccccc------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCC
Q psy14801 247 SFAATTL------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRN 318 (404)
Q Consensus 247 ~~~~~~~------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~ 318 (404)
.. +..+ .+...+.++.++|.|++++++++++++|+++||+||.+++++.++.++ ..++.+||++.||++.+
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k 323 (353)
T PRK07409 245 GN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLK 323 (353)
T ss_pred CC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCcccc
Confidence 11 1111 122345789999999999999999999999999999999999988776 56788999999999988
Q ss_pred ccccc
Q psy14801 319 YLTKF 323 (404)
Q Consensus 319 ~~~~~ 323 (404)
|....
T Consensus 324 ~~~~~ 328 (353)
T PRK07409 324 DPDTA 328 (353)
T ss_pred chHHH
Confidence 87654
No 26
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.7e-49 Score=384.93 Aligned_cols=291 Identities=24% Similarity=0.293 Sum_probs=239.1
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
.+...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+.+.+.. ++||++|+||||+++|++|++
T Consensus 13 ~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~---~gVV~aSaGNhg~avA~aa~~ 89 (403)
T PRK08526 13 RISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQ---HGVIAASAGNHAQGVAISAKK 89 (403)
T ss_pred HHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcC---CEEEEECccHHHHHHHHHHHH
Confidence 34456789999999999998899999999999999999999999999888765431 579999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||..++..|+++++.|||+|++++. +|+ +.++.+.+++++. +.+|+++|.||. .+.|+.++|+||
T Consensus 90 ~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~---~a~~~a~~~a~~~-g~~~v~p~~~~~-~i~G~gtia~EI 162 (403)
T PRK08526 90 FGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYD---EAYAFALEYAKEN-NLTFIHPFEDEE-VMAGQGTIALEM 162 (403)
T ss_pred cCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEeeCCCCCHH-HHhhhHHHHHHH
Confidence 999999999999999999999999999999975 344 4567788888775 578889999996 689999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc-cccc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA-ATTL 253 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 253 (404)
++|++ .||++|+|+|+||+++|++.+++...|.+|||+|+|++++.+... ..+.........+.+++++.... +..+
T Consensus 163 ~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~ 241 (403)
T PRK08526 163 LDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINL 241 (403)
T ss_pred HHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHH
Confidence 99997 699999999999999999999999999999999999998754211 11110011122344555543211 2112
Q ss_pred --CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 254 --DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 254 --~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
....+|+++.|+|.|+.++++.+++++|++++|+++.+++++.+...+..++.+||++.|||.-
T Consensus 242 ~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsGGni 307 (403)
T PRK08526 242 AIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSGGNI 307 (403)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECCCCC
Confidence 2357799999999999999999999999999999999999987533334467899999999864
No 27
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.7e-48 Score=376.63 Aligned_cols=278 Identities=19% Similarity=0.224 Sum_probs=226.4
Q ss_pred CCCCCCCCeeecCCCCCCCC--------CeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q psy14801 18 PTVPGKVPLLPQSKQGSILL--------PTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY-------- 75 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~-------- 75 (404)
.+++++|||+++++|+..+| .+||+|+|++|| |||||||++.+++.. +.+.|.++|+.
T Consensus 47 ~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~ 126 (404)
T cd06447 47 SHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASE 126 (404)
T ss_pred cCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhh
Confidence 35699999999999887654 799999999999 999999999998864 77888888876
Q ss_pred ---------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 76 ---------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 76 ---------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
+||++||||||+|+|++|+.+|++|+||||.++++.|+++|+.|||+|+.++. +++ +.++.+++++
T Consensus 127 ~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~---~a~~~a~~la 201 (404)
T cd06447 127 KFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYS---KAVEEGRKQA 201 (404)
T ss_pred hhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999985 343 4466788888
Q ss_pred HhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC---C-----cCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcC
Q psy14801 147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG---K-----VDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADP 217 (404)
Q Consensus 147 ~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~---~-----~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p 217 (404)
++.++.+|++++++| +.+.||.++|+||++|+.. + ||.+|+|+|+||+++||+.+++.. .|+++||+|+|
T Consensus 202 ~~~~~~~~v~~~n~~-~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP 280 (404)
T cd06447 202 AADPMCYFVDDENSR-DLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEP 280 (404)
T ss_pred HHCCCeEeCCCCCch-hHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 876566778885444 6889999999999999862 2 568999999999999999999997 78999999999
Q ss_pred CCCccccc-CCCCCC---C-CC--CCccccccCCCCccccc---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801 218 FGSILAQP-QSLNDV---P-EN--QISYNEVEGIGYSFAAT---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS 287 (404)
Q Consensus 218 ~~~~~~~~-~~~~~~---~-~~--~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~ 287 (404)
.+++.+.. ..-+.. . .. ....+.+++++...... .+.....|.++.|+|.|+.++++.+++++|+++||+
T Consensus 281 ~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepS 360 (404)
T cd06447 281 THSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPS 360 (404)
T ss_pred CCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHH
Confidence 98864311 011100 0 00 01234455554432211 112456789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHh
Q psy14801 288 SGTAMHVACQAAKS 301 (404)
Q Consensus 288 tg~tlag~~~~lk~ 301 (404)
+|.+++++.++.++
T Consensus 361 gAa~lAAl~~~~~~ 374 (404)
T cd06447 361 AAAGFTGPAQVLSE 374 (404)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998775
No 28
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-48 Score=373.47 Aligned_cols=289 Identities=19% Similarity=0.229 Sum_probs=234.5
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
.+...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.. ++||++|+||||+|+|++|+.
T Consensus 12 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~---~gvv~aSsGN~g~alA~~a~~ 88 (322)
T PRK07476 12 RIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA---RGVVTASTGNHGRALAYAARA 88 (322)
T ss_pred HHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC---CeEEEECCChHHHHHHHHHHH
Confidence 44567899999999999988889999999999999999999999999999888862 349999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||+.+++.|+++|+.|||+|+.++. ++ ++.++.++++.++. +.+|+++|.||.+ +.|+.++++||
T Consensus 89 ~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei 161 (322)
T PRK07476 89 LGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQ---DDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEI 161 (322)
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CH---HHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHH
Confidence 999999999999999999999999999999985 33 34566788887765 5688899999974 68889999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC----CC-ccc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI----GY-SFA 249 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i----~~-~~~ 249 (404)
++|+. ++|++|+++|+|++++|++.+++...|.+|||+|+|.+++.+... ..+.........+...++ +. ...
T Consensus 162 ~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~ 240 (322)
T PRK07476 162 LEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRY 240 (322)
T ss_pred HHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHH
Confidence 99997 689999999999999999999999999999999999987532210 001000000111222222 21 112
Q ss_pred ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCC-CeEEEEecCCCC
Q psy14801 250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGVR 317 (404)
Q Consensus 250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~-~~vv~v~~~~~~ 317 (404)
+........|+++.++|.|+.++++.+++++|++++|+++.+++++... ...++ .+||++.|+++.
T Consensus 241 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~tGg~~ 307 (322)
T PRK07476 241 TFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVVSGANI 307 (322)
T ss_pred HHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEECCCCC
Confidence 2233445678999999999999999999999999999999999998732 23333 799999998865
No 29
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=384.32 Aligned_cols=307 Identities=21% Similarity=0.279 Sum_probs=247.1
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a 93 (404)
+.++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+.+. . +.||++|+||||+|+|++|
T Consensus 16 ~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~--~gvv~aSsGN~g~a~A~aa 92 (406)
T PRK06382 16 KSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-R--NGVITASAGNHAQGVAYAA 92 (406)
T ss_pred HHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-C--CeEEEECCCHHHHHHHHHH
Confidence 345667789999999999998889999999999999999999999999988876543 2 3599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.+|++|+||||..++..|+++++.|||+|++++. +++ ++.+.+++++++. +.+|+++|+||. .+.|+.++|+
T Consensus 93 ~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~---~a~~~a~~la~~~-~~~~v~~~~~~~-~i~g~~t~~~ 165 (406)
T PRK06382 93 SINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYD---EAHRYADKIAMDE-NRTFIEAFNDRW-VISGQGTIGL 165 (406)
T ss_pred HHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCccCChH-HHHHHHHHHH
Confidence 99999999999999999999999999999999985 344 4466788888875 678889999997 5789999999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---c
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---A 249 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~ 249 (404)
||++|++ .||++|+|+|+||+++|++.+++...|++||++|+|.+++.+.... .+.........+.+++++... .
T Consensus 166 Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~ 244 (406)
T PRK06382 166 EIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDL 244 (406)
T ss_pred HHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHH
Confidence 9999997 7999999999999999999999999999999999999986532110 011001112234455554432 1
Q ss_pred ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC--Cccccccchh
Q psy14801 250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR--NYLTKFISDE 327 (404)
Q Consensus 250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~--~~~~~~~~~~ 327 (404)
+..+...+.|.++.|+|.|+.++++.+++++|+++||+++.+++++... +...++.+||++.|||.. .++.+.+..+
T Consensus 245 ~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~~~~~~~~Vv~i~sGGn~d~~~~~~~~~~~ 323 (406)
T PRK06382 245 TFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-KVDVKGKKVAIVVSGGNINPLLMSKIIYKE 323 (406)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-cccCCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2223346789999999999999999999999999999988888876432 222356789999998763 3566666666
Q ss_pred HHhhc
Q psy14801 328 WMIEK 332 (404)
Q Consensus 328 ~~~~~ 332 (404)
|+.+.
T Consensus 324 ~~~~~ 328 (406)
T PRK06382 324 LENLG 328 (406)
T ss_pred HHhcC
Confidence 65443
No 30
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=384.81 Aligned_cols=291 Identities=23% Similarity=0.318 Sum_probs=239.7
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+++. +++||++|+||||+++|++|+
T Consensus 14 ~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~---~~~vv~aSsGN~g~alA~~a~ 90 (404)
T PRK08198 14 ERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER---ARGVVAASAGNHAQGVAYAAS 90 (404)
T ss_pred HHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc---CCEEEEECCCHHHHHHHHHHH
Confidence 34455788999999999998889999999999999999999999999998875543 278999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||..++..|+++++.|||+|+.++. +++ ++++.+.+++++. +.+|+++|.||. .+.|+.++|+|
T Consensus 91 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~~~~-~~~g~~t~a~E 163 (404)
T PRK08198 91 LLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYD---EALAKAQELAEET-GATFVHPFDDPD-VIAGQGTIGLE 163 (404)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCCCCCcc-HHHHHHHHHHH
Confidence 9999999999999999999999999999999975 343 4567788888775 678899999997 57899999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCc---ccc
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYS---FAA 250 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~---~~~ 250 (404)
|++|++ ++|++|+|+|+||+++|++.+++...|.+|+|+|+|.+++.+... ..+............+++... ..+
T Consensus 164 I~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~ 242 (404)
T PRK08198 164 ILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLT 242 (404)
T ss_pred HHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHH
Confidence 999997 699999999999999999999999999999999999998654211 001100001112223333221 112
Q ss_pred cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
..+...+.|+++.|+|.|+..+++.+++.+|++++|++|.+++|+.++. +..++.+||++.|++..
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~-~~~~~~~vv~vl~ggn~ 308 (404)
T PRK08198 243 FEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGK-LDVKGKKVVAVLSGGNI 308 (404)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhch-hhcCCCeEEEEECCCCC
Confidence 2233567899999999999999999999999999999999999988764 45578899999998764
No 31
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=7.3e-49 Score=386.02 Aligned_cols=301 Identities=18% Similarity=0.192 Sum_probs=245.8
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
.+..++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... ...||++|+||||+|+|++|+.
T Consensus 16 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~---~~~vv~aSsGN~g~alA~~a~~ 92 (403)
T PRK07334 16 RLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER---ARGVIAMSAGNHAQGVAYHAQR 92 (403)
T ss_pred HHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh---CCcEEEECCcHHHHHHHHHHHH
Confidence 3455679999999999988888999999999999999999999999998754322 1469999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||..+++.|+++++.|||+|+.++. ++ +++++.+++++++. +.+|+++|.||. .+.||.++|+||
T Consensus 93 ~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~---~~~~~~a~~l~~~~-~~~~~~~~~~~~-~~~g~~t~~~Ei 165 (403)
T PRK07334 93 LGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TL---DEARAHARELAEEE-GLTFVHPYDDPA-VIAGQGTVALEM 165 (403)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CH---HHHHHHHHHHHHhc-CCEecCCCCCHH-HHHhHHHHHHHH
Confidence 999999999999999999999999999999974 33 34567788888775 678899999997 569999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC---cccccc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY---SFAATT 252 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~ 252 (404)
++|+. .||++|+++|+||+++|++.+++...|..|+++|+|++++.+........ ......+.+++++. ...+..
T Consensus 166 ~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~-~~~~~~~~~~gi~~~~~~~~~~~ 243 (403)
T PRK07334 166 LEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVA-LPCGGSTIAEGIAVKQPGQLTLE 243 (403)
T ss_pred HhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCC-ccCCCCCccceecCCCccHHHHH
Confidence 99996 79999999999999999999999999999999999999865432111110 01122344555542 233444
Q ss_pred cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC--CCccccccchhHH
Q psy14801 253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWM 329 (404)
Q Consensus 253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~--~~~~~~~~~~~~~ 329 (404)
+.....|+++.|+|.|+..+++.+++++|++++|++|.+++++.+..++ .++.+||++.||+. ..++...+...|.
T Consensus 244 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~-~~~~~vv~i~~ggn~d~~~l~~il~~~l~ 321 (403)
T PRK07334 244 IVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER-FRGRKVGLVLSGGNIDTRLLANVLLRGLV 321 (403)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh-cCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5566789999999999999999999999999999999999998876554 36779999999985 3344444444443
No 32
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.1e-48 Score=372.54 Aligned_cols=289 Identities=19% Similarity=0.273 Sum_probs=234.5
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..++..+++|||++++++++..|++||+|+|++|||||||||++.+++.++.+++.. ++||++|+||||+|+|++|+
T Consensus 16 ~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~ 92 (321)
T PRK07048 16 ARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRR---AGVVTFSSGNHAQAIALSAR 92 (321)
T ss_pred HHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcC---CcEEEeCCCHHHHHHHHHHH
Confidence 455667889999999999887889999999999999999999999999988754321 57999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||.++++.|+++|+.+||+|+.++. .++ ...+.+++++++. +.+|+++|.||. .+.|+.++++|
T Consensus 93 ~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~---~~~~~a~~l~~~~-g~~~~~~~~~~~-~~~g~~t~~~E 165 (321)
T PRK07048 93 LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTE---DREEIGRRLAEER-GLTLIPPYDHPH-VIAGQGTAAKE 165 (321)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEECCCCCcc-hhhccchHHHH
Confidence 9999999999999999999999999999999985 233 3456688888775 578889999996 57889999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC-----CCcc
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI-----GYSF 248 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i-----~~~~ 248 (404)
|++|+. .||++|+|+|+|++++|++.+++...|+.+|++|+|++++..... ..+............+++ +...
T Consensus 166 I~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~ 244 (321)
T PRK07048 166 LFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYT 244 (321)
T ss_pred HHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHH
Confidence 999997 799999999999999999999999999999999999988532110 001000000111122222 1111
Q ss_pred cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
+ .....+.|..+.|+|.|+.++++++++++|+++||++|.+++++.+..++ .++.+||+|.||+..
T Consensus 245 ~--~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tGGn~ 310 (321)
T PRK07048 245 F--PIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISGGNV 310 (321)
T ss_pred H--HHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh-cCCCeEEEEeCCCCC
Confidence 1 11235678999999999999999999999999999999999999886554 467899999998754
No 33
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3e-48 Score=369.67 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=234.2
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
.+...+++|||+++++|+..+|++||+|+|++|||||||||++.+++..+.+. +. .+||++|+||||+|+|++|+
T Consensus 12 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~ 87 (317)
T TIGR02991 12 RISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRA----AGVVAASTGNHGRALAYAAA 87 (317)
T ss_pred HHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccC----CeEEEECCCHHHHHHHHHHH
Confidence 34556799999999999888888999999999999999999999999887543 33 57999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||..+++.|+++++.|||+|+.++. +++ +..+.+++++++. +++|+++|.||. .+.|+.++|+|
T Consensus 88 ~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~n~~-~~~g~~t~a~E 160 (317)
T TIGR02991 88 EEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQD---DAQEEVERLVADR-GLTMLPPFDHPD-IVAGQGTLGLE 160 (317)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEeeCCCCChH-HHhhHHHHHHH
Confidence 9999999999999999999999999999999986 343 3456678887765 578999999997 46889999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC----CC-cc
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI----GY-SF 248 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i----~~-~~ 248 (404)
|++|+. .+|++|+++|+|++++|++.+++...|.+|||+|+|++++.+... ..+.........+.++++ +. ..
T Consensus 161 i~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~ 239 (317)
T TIGR02991 161 VVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNR 239 (317)
T ss_pred HHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCH
Confidence 999997 589999999999999999999999999999999999876543211 011100011112333322 21 12
Q ss_pred cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
.+..+....+|.++.|+|.|+.++++++++++|++++|+++.+++++.+. ...++.+||+|.||++.
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~--~~~~~~~vvvvltG~n~ 306 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAG--KIKNPGPCAVIVSGRNI 306 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcC--ccccCCcEEEEeCCCCC
Confidence 23344456789999999999999999999999999999999999998742 22357789999999865
No 34
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=372.78 Aligned_cols=290 Identities=20% Similarity=0.231 Sum_probs=235.7
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
.+...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++... ..||++|+||||+|+|++|+.
T Consensus 14 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~--~~vv~aSsGN~g~alA~~a~~ 91 (322)
T PRK06110 14 VVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV--RGVISATRGNHGQSVAFAARR 91 (322)
T ss_pred HHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC--ceEEEECCCHHHHHHHHHHHH
Confidence 345667999999999999888899999999999999999999999999998876544 349999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||..+++.|+++++.+||+|+.++. +++ +.++.++++.++. +.+|+++| ||. .+.||.++|+||
T Consensus 92 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~-~~~-~~~G~~t~~~Ei 163 (322)
T PRK06110 92 HGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQ---AAREEAARLAAER-GLHMVPSF-HPD-LVRGVATYALEL 163 (322)
T ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEcCCC-CCh-HHhccchHHHHH
Confidence 999999999999999999999999999999964 343 4466788888765 56888888 665 468999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc-cccc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA-ATTL 253 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 253 (404)
++|+. ++|++|+|+|+|++++|++.+++...|..|+|+|+|.+++.+... ..+.........+...+++.... +..+
T Consensus 164 ~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~ 242 (322)
T PRK06110 164 FRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEAL 242 (322)
T ss_pred HhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHH
Confidence 99997 689999999999999999999999999999999999988653211 11110001111233334322111 1122
Q ss_pred --CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 254 --DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 254 --~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
.+...++++.|+|.|+.++++++++++|+++|++++.+++++.+..++. ++.+||++.||+..
T Consensus 243 ~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tGgn~ 307 (322)
T PRK06110 243 EVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSGGNI 307 (322)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECCCCC
Confidence 2457899999999999999999999999999999999999998865553 67799999999643
No 35
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=9.4e-48 Score=370.66 Aligned_cols=285 Identities=22% Similarity=0.259 Sum_probs=234.1
Q ss_pred ccCCCCCCC--------cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe
Q psy14801 8 SNSARNSPF--------TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79 (404)
Q Consensus 8 ~~~~~~~~~--------~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~ 79 (404)
...||+++| +++++|.|||+++. .+||+|+|++|||||||||++.+++..+.+.|. ++||+
T Consensus 41 ~~~wry~~~lP~~~~~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~~vv~ 109 (347)
T PRK08329 41 LDMRRYIDYLPVDEEFLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVI 109 (347)
T ss_pred cchhhhHHhCCCCCCCCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC----CEEEE
Confidence 456777754 45789999999973 489999999999999999999999999999987 78999
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCC
Q psy14801 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFR 159 (404)
Q Consensus 80 ~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~ 159 (404)
+|+||||+|+|++|+++|++|+||||.+++..|+.+++.|||+|+.+++ +++ +..+.+++++++. +.+|++++.
T Consensus 110 aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~---~~~~~a~~l~~~~-~~~~~~~~~ 183 (347)
T PRK08329 110 DSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRM---EVHEEAVKFSKRN-NIPYVSHWL 183 (347)
T ss_pred ECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCeeccCCC
Confidence 9999999999999999999999999999999999999999999999986 333 3456677777764 557788889
Q ss_pred CCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCcccccCCCCCCCC
Q psy14801 160 NPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQPQSLNDVPE 233 (404)
Q Consensus 160 np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~~~~~~~~~ 233 (404)
||. .+.|+.++++||++|+. .||++|+|+|+|++++|++.+++... +..|+++|||.++.......
T Consensus 184 np~-~~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~------ 255 (347)
T PRK08329 184 NPY-FLEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS------ 255 (347)
T ss_pred Cch-hhccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc------
Confidence 997 46889999999999997 79999999999999999999999863 44699999999875432110
Q ss_pred CCCccccccCCCCcccccc-----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCC
Q psy14801 234 NQISYNEVEGIGYSFAATT-----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQ 306 (404)
Q Consensus 234 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~ 306 (404)
....+.++++.....+.. ..+...+..+.|+|.|+.++++++++ +|++++|+||.+++|+.++.++ ..++.
T Consensus 256 -~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~ 333 (347)
T PRK08329 256 -KSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGS 333 (347)
T ss_pred -CCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCC
Confidence 111233444433222211 12334567899999999999999986 7999999999999999998876 55788
Q ss_pred eEEEEecCCCCCc
Q psy14801 307 RCVVILADGVRNY 319 (404)
Q Consensus 307 ~vv~v~~~~~~~~ 319 (404)
+||++.||++.|.
T Consensus 334 ~Vv~~~TG~glK~ 346 (347)
T PRK08329 334 KVLLPLSGSGLKN 346 (347)
T ss_pred eEEEEeCCCCccC
Confidence 9999999998765
No 36
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.2e-47 Score=368.46 Aligned_cols=293 Identities=24% Similarity=0.260 Sum_probs=238.9
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV 92 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~ 92 (404)
.+.+.+.+|+|||+++++|+...+ .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 13 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 13 DDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----CEEEEeCCCHHHHHHHHH
Confidence 345788999999999999988666 699999999999999999999999999999885 789999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHH
Q psy14801 93 AAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTA 172 (404)
Q Consensus 93 a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a 172 (404)
|+.+|++|++|||.++++.|+++|+.+||+|+.++. +++ ++.+.+++++++. .+|+++|.||.+ +.||.+++
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~---~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~ 160 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFD---DALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIA 160 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHH---HHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhH
Confidence 999999999999999999999999999999999986 343 3456688888765 688899999986 56899999
Q ss_pred HHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCccccc-CCCCCC--CCCCCcccccc
Q psy14801 173 EEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQP-QSLNDV--PENQISYNEVE 242 (404)
Q Consensus 173 ~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~-~~~~~~--~~~~~~~~~~~ 242 (404)
+||++|+.. .||.+|+++|+|++++|++.+++... +..+||+|+|.++..... ...+.. .......+...
T Consensus 161 ~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~ 240 (324)
T cd01563 161 FEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIAT 240 (324)
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceee
Confidence 999999974 69999999999999999999999864 578999999998753321 111100 00011122333
Q ss_pred CCCCccc---ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCC
Q psy14801 243 GIGYSFA---ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADG 315 (404)
Q Consensus 243 ~i~~~~~---~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~ 315 (404)
+++.... +.. +.....+..+.|+|.|+.++++++++.+|+++||+||.+++++.++.++ +.++.+||++.||+
T Consensus 241 gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~ 320 (324)
T cd01563 241 AIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGH 320 (324)
T ss_pred eeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence 3332211 111 1123457889999999999999999999999999999999999988766 35678999999998
Q ss_pred CCC
Q psy14801 316 VRN 318 (404)
Q Consensus 316 ~~~ 318 (404)
+.+
T Consensus 321 g~~ 323 (324)
T cd01563 321 GLK 323 (324)
T ss_pred ccC
Confidence 865
No 37
>PLN02569 threonine synthase
Probab=100.00 E-value=1.8e-47 Score=379.33 Aligned_cols=306 Identities=16% Similarity=0.149 Sum_probs=242.6
Q ss_pred ccCCCCCC-C---------cCCCCCCCCeeecCCCCCC-CCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCC-CCC
Q psy14801 8 SNSARNSP-F---------TPTVPGKVPLLPQSKQGSI-LLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVL-KPG 74 (404)
Q Consensus 8 ~~~~~~~~-~---------~~~~~g~TPl~~~~~l~~~-~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~-~~~ 74 (404)
...||+++ + +++++|+|||+++++|... +|. +||+|+|++|||||||||++..++..+.+.|.. ++.
T Consensus 108 ~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~ 187 (484)
T PLN02569 108 SGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPV 187 (484)
T ss_pred CCccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCc
Confidence 45688877 3 5678999999999999887 785 999999999999999999999999999887652 234
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcE
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV 153 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~ 153 (404)
..|+++||||+|.|+|++|+.+|++|+||||++ .+..|+.+++.+||+|+.+++ +|++ +++.++++.++. +++
T Consensus 188 ~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~---a~~~a~e~~~~~-~~~ 261 (484)
T PLN02569 188 VGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDG---CMRLIREVTAEL-PIY 261 (484)
T ss_pred cEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHH---HHHHHHHHHHHc-CCE
Confidence 679999999999999999999999999999996 888999999999999999986 4554 456677777765 467
Q ss_pred eecCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCcccccC
Q psy14801 154 VLDQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQPQ 226 (404)
Q Consensus 154 ~~~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~~ 226 (404)
++++| ||. -+.|+.++|+||++|+.++ ||++|+|+|+|++++|++.+|++.. +..|+++|||+++......
T Consensus 262 ~~n~~-Np~-~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a 339 (484)
T PLN02569 262 LANSL-NSL-RLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRA 339 (484)
T ss_pred ecCCC-Ccc-hhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHH
Confidence 77776 997 4689999999999999865 9999999999999999999998852 2349999999998543211
Q ss_pred -CCCC--CCCCCCccccccCCCCcccccccC------ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHH
Q psy14801 227 -SLND--VPENQISYNEVEGIGYSFAATTLD------RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ 297 (404)
Q Consensus 227 -~~~~--~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~ 297 (404)
..+. ........+.++++.... |.... ....+..+.|+|.|+.+++++ ++.+|++++|+||.+++|+.+
T Consensus 340 ~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~k 417 (484)
T PLN02569 340 YKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKK 417 (484)
T ss_pred HHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHH
Confidence 0110 000111233444443321 22211 112344689999999999999 888999999999999999998
Q ss_pred HHHh--cCCCCeEEEEecCCCCCccccc
Q psy14801 298 AAKS--LRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 298 ~lk~--~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
+.++ ..++.+||++.||++.+|....
T Consensus 418 l~~~g~i~~~~~VV~i~Tg~GlK~~~~~ 445 (484)
T PLN02569 418 LRASGVIGPTDRTVVVSTAHGLKFTQSK 445 (484)
T ss_pred HHHcCCCCCCCcEEEEeCCCcccChhHH
Confidence 8775 4578899999999999886543
No 38
>PLN02550 threonine dehydratase
Probab=100.00 E-value=5e-48 Score=387.24 Aligned_cols=290 Identities=21% Similarity=0.246 Sum_probs=239.1
Q ss_pred CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.. .. ..||++|+||||+++|++|+++|
T Consensus 104 ~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~--~GVV~aSaGNhAqgvA~aA~~lG 180 (591)
T PLN02550 104 YDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LD--KGVICSSAGNHAQGVALSAQRLG 180 (591)
T ss_pred hccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CC--CCEEEECCCHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999999999999999998875432 23 34999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~ 177 (404)
++|+||||..++..|+++++.|||+|++++. +|++ +.+.|++++++. +.+|+++|+||. .+.|+.++|+||++
T Consensus 181 ika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~de---a~~~A~~la~e~-g~~fi~pfddp~-viaGqgTig~EI~e 253 (591)
T PLN02550 181 CDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDE---AQAYAKQRALEE-GRTFIPPFDHPD-VIAGQGTVGMEIVR 253 (591)
T ss_pred CCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHH---HHHHHHHHHHhc-CCEEECCCCChH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999975 4543 466688888775 567889999997 67899999999999
Q ss_pred HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cccc
Q psy14801 178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---ATTL 253 (404)
Q Consensus 178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~~~ 253 (404)
|+...+|++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+.........+..+++..... ...+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99866999999999999999999999999999999999999986543111 1110001112233444432221 1122
Q ss_pred CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14801 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVR 317 (404)
Q Consensus 254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~ 317 (404)
...++|+++.|+|.|+.++++.+++.++++++|++|.+++|+.++.++. .++.+||+|.||++-
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNi 398 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANM 398 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence 3567899999999999999999999999999999999999999887642 367799999999863
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=8.4e-48 Score=377.63 Aligned_cols=295 Identities=18% Similarity=0.192 Sum_probs=236.9
Q ss_pred CCCCCCCCeeecCCCCCCCC--------CeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q psy14801 18 PTVPGKVPLLPQSKQGSILL--------PTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY-------- 75 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~-------- 75 (404)
++++++|||++++.+++.+| .+||+|+|++|| |||||||++.+++.. ++++|.+.|+.
T Consensus 70 ~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~ 149 (441)
T PRK02991 70 TGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASP 149 (441)
T ss_pred cCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcch
Confidence 45689999999999887654 699999999999 999999999998875 45778776664
Q ss_pred ---------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 76 ---------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 76 ---------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
+||++|+||||+|+|++|+.+|++|+||||.++++.|+++|+.|||+|+.++. +|+ ++.+.+++++
T Consensus 150 ~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~---~a~~~A~~la 224 (441)
T PRK02991 150 EFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYG---VAVEEGRKAA 224 (441)
T ss_pred hhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999986 444 4466788888
Q ss_pred HhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcC
Q psy14801 147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADP 217 (404)
Q Consensus 147 ~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p 217 (404)
++.++.+|++++.|| +.+.||.++|+||++|+.. .||.+|||+|+||+++||+.+++.. .|++|||+|+|
T Consensus 225 ~~~~~~~~~~~~~~~-~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp 303 (441)
T PRK02991 225 ESDPNCYFIDDENSR-TLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP 303 (441)
T ss_pred HhcCCeEeCCCCCch-hHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 876567788888666 4789999999999999863 3679999999999999999999997 68899999999
Q ss_pred CCCccccc-CCCCCCCCC------CCccccccCCCCcccc---cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801 218 FGSILAQP-QSLNDVPEN------QISYNEVEGIGYSFAA---TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS 287 (404)
Q Consensus 218 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~ 287 (404)
.+++.+.. ...+..... ....+.+++++..... ..+.+...+.++.|+|.|+.++++.+++++|+++||+
T Consensus 304 ~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS 383 (441)
T PRK02991 304 THSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPS 383 (441)
T ss_pred CCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHH
Confidence 99854321 111110000 0122445555443221 1222356789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH------h--cC---CCCeEEEEecCCCCC
Q psy14801 288 SGTAMHVACQAAK------S--LR---PDQRCVVILADGVRN 318 (404)
Q Consensus 288 tg~tlag~~~~lk------~--~~---~~~~vv~v~~~~~~~ 318 (404)
+|.+++++.++.+ + ++ ++.+||++.|++...
T Consensus 384 ~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~ 425 (441)
T PRK02991 384 ALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMV 425 (441)
T ss_pred HHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCC
Confidence 9999999976543 2 22 578999999998654
No 40
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-48 Score=367.99 Aligned_cols=292 Identities=22% Similarity=0.262 Sum_probs=237.0
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++.. ..+||++|+||||+|+|++|+
T Consensus 12 ~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~---~~~vv~aSsGN~g~alA~~a~ 88 (317)
T PRK06815 12 QRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR---QQGVITASSGNHGQGVALAAK 88 (317)
T ss_pred HHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc---CceEEEECCChHHHHHHHHHH
Confidence 34455678999999999988888999999999999999999999999986543321 156999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||..+++.|+++++.+||+|+.++. ++ .+....+++++++. +.+|+++|.||. .+.|+.++|+|
T Consensus 89 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~~~~~-~~~~~~~~~~~~-~~~g~~t~a~E 161 (317)
T PRK06815 89 LAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DA---LNAELAARRAAEQQ-GKVYISPYNDPQ-VIAGQGTIGME 161 (317)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH---HHHHHHHHHHHHhc-CCEEecCCCChh-hhcchhHHHHH
Confidence 9999999999999999999999999999999986 23 34456677887764 678889999996 56899999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcc----c
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSF----A 249 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~----~ 249 (404)
|++|+. .||++|+|+|+|++++|++.+++...|++||++|+|.+++.+... ..+.........+.++++.... .
T Consensus 162 i~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 240 (317)
T PRK06815 162 LVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI 240 (317)
T ss_pred HHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence 999997 699999999999999999999999999999999999998654221 1111101111223333332221 1
Q ss_pred ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801 250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318 (404)
Q Consensus 250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~ 318 (404)
+..+...+.+.++.|+|.|+.++++++++.+|+++||+||.+++|+.+..++. ++.+||+|.||++.+
T Consensus 241 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 241 TFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCGKNIV 308 (317)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECCCCCC
Confidence 12233457789999999999999999999999999999999999999877664 678999999998764
No 41
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.6e-48 Score=368.80 Aligned_cols=292 Identities=21% Similarity=0.268 Sum_probs=232.5
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a 93 (404)
+..+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+.... .+||++|+||||+|+|++|
T Consensus 18 ~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~---~~vv~~SsGN~g~alA~~a 94 (333)
T PRK08638 18 KQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKR---KGVVACSAGNHAQGVALSC 94 (333)
T ss_pred HHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcC---CeEEEeCCcHHHHHHHHHH
Confidence 3455667899999999999888888999999999999999999999999887653221 5799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.+|++|+||||+++++.|+++++.+||+|+.+++ ++ ++.++.+++++++. +.+|+++|.||. .+.|+.++|+
T Consensus 95 a~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~a~~~-g~~~~~~~~~~~-~~~g~~t~a~ 167 (333)
T PRK08638 95 ALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NF---NDTIAKVEEIVEEE-GRTFIPPYDDPK-VIAGQGTIGL 167 (333)
T ss_pred HHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CH---HHHHHHHHHHHHhc-CCEEcCcCCCcc-hhccccHHHH
Confidence 99999999999999999999999999999999975 33 34567788888775 568899999997 4688999999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcccccc
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFAATT 252 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 252 (404)
||++|+. ++|++|+|+|+|++++|++.+++...|.+|||+|||.+++.+.... .+.........+...++... .|..
T Consensus 168 Ei~~q~~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~ 245 (333)
T PRK08638 168 EILEDLW-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGN 245 (333)
T ss_pred HHHhhcC-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccH
Confidence 9999995 6999999999999999999999999999999999999975322110 01100011111222333211 1222
Q ss_pred cC----ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH-HhcCCCCeEEEEecCCCC
Q psy14801 253 LD----RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA-KSLRPDQRCVVILADGVR 317 (404)
Q Consensus 253 ~~----~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l-k~~~~~~~vv~v~~~~~~ 317 (404)
++ ....|.++.|+|.|+.++++++++++|++++++++.+++++.... ++..++.+||+|.||+..
T Consensus 246 ~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~Ggn~ 315 (333)
T PRK08638 246 LTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISGGNV 315 (333)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECCCCC
Confidence 22 356789999999999999999999999999998877777765321 223367789999998654
No 42
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.1e-48 Score=368.31 Aligned_cols=291 Identities=22% Similarity=0.315 Sum_probs=240.1
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
+-+...+|+|||+++++|+..+|++||+|+|++|||||||||++.+++.++++.|. .++||++|+||||+|+|++|+
T Consensus 9 ~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~---~~~iv~~ssGN~g~alA~~a~ 85 (304)
T cd01562 9 ARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER---AKGVVAASAGNHAQGVAYAAK 85 (304)
T ss_pred HHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc---CCcEEEECCCHHHHHHHHHHH
Confidence 33456789999999999998888999999999999999999999999999987762 267999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|++|||..++..|+++|+.+||+|+.+++ +++ ++++.+++++++. +.+|+++|.||.+ +.|+.++++|
T Consensus 86 ~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~---~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~E 158 (304)
T cd01562 86 LLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFD---EAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLE 158 (304)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHH
Confidence 9999999999999999999999999999999986 333 4567788888875 6788999999974 6788999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---cc
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---AA 250 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~~ 250 (404)
|++|+. .||++|+++|+|+|++|++.+++...|..|||+|+|.+++.+.... .+.............+++... .+
T Consensus 159 i~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 237 (304)
T cd01562 159 ILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELT 237 (304)
T ss_pred HHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHH
Confidence 999997 4999999999999999999999999999999999998875432110 010000011122233333221 11
Q ss_pred cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
..+.....+..+.++|.|++++++++++++|+++||+||.+++++.++.++. ++.+||+++||++.
T Consensus 238 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG~~ 303 (304)
T cd01562 238 FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGGNI 303 (304)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCCCC
Confidence 2234456789999999999999999999999999999999999999987776 78899999999863
No 43
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.1e-47 Score=383.77 Aligned_cols=290 Identities=20% Similarity=0.250 Sum_probs=240.1
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
+...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+. +. ..||++|+||||+++|++|++
T Consensus 11 v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~----~gVV~aSaGNha~~vA~aa~~ 86 (499)
T TIGR01124 11 VYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKA----RGVIAASAGNHAQGVAFSAAR 86 (499)
T ss_pred hhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcC----CEEEEECCCHHHHHHHHHHHH
Confidence 3446789999999999998999999999999999999999999999876433 33 579999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||.++|..|+++++.+||+|++++. +|+ ++.+.+++++++. +.+|+++|.||. .+.|+.++|+||
T Consensus 87 ~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d---~a~~~a~~la~~~-g~~~i~p~~~~~-~i~G~gtig~EI 159 (499)
T TIGR01124 87 LGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFD---DAKAKAIELSQEK-GLTFIHPFDDPL-VIAGQGTLALEI 159 (499)
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHH---HHHHHHHHHHHhc-CCEeeCCCCChH-HHHhhHHHHHHH
Confidence 999999999999999999999999999999975 444 4567788888875 568889999996 678999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---AT 251 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~ 251 (404)
++|+...+|++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+.........+.+++++...+ +.
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 9999867999999999999999999999999999999999999986542211 0110001112233445433221 22
Q ss_pred ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCCC
Q psy14801 252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVR 317 (404)
Q Consensus 252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~ 317 (404)
.+.+.++|+++.|+|.|+.++++.+++.+|++++|+||.+++|+.++.++.. ++.+||+|.||++-
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~ 306 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANM 306 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC
Confidence 2234678999999999999999999999999999999999999999876643 57899999999864
No 44
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=5.4e-48 Score=381.20 Aligned_cols=295 Identities=20% Similarity=0.262 Sum_probs=237.3
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..+...+++|||++++++++..|++||+|+|++|||||||||+|.+++..+.+. .. .++||++|+||||+++|++|+
T Consensus 17 ~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~-~~--~~~Vv~aSsGN~g~alA~~a~ 93 (420)
T PRK08639 17 KRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDE-EL--AAGVVCASAGNHAQGVAYACR 93 (420)
T ss_pred HHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHH-hh--CCEEEEECccHHHHHHHHHHH
Confidence 445567889999999999988889999999999999999999999999885322 11 167999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||..++..|+++++.|||+|+.+...+ +..++.++.+.+++++. +.+|+++|.||. .+.|+.++|+|
T Consensus 94 ~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~-~~~G~~tig~E 169 (420)
T PRK08639 94 HLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPD-VIAGQGTVAVE 169 (420)
T ss_pred HcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChh-HhcchhHHHHH
Confidence 999999999999999999999999999754332111 12345577788888875 578899999997 57899999999
Q ss_pred HHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccccc
Q psy14801 175 ILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFAAT 251 (404)
Q Consensus 175 i~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~ 251 (404)
|++|+... ||++|+|+|+||+++|++.+++...|++|||+|+|.+++.+.... .+.........+.+++++......
T Consensus 170 I~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~ 249 (420)
T PRK08639 170 ILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGD 249 (420)
T ss_pred HHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccH
Confidence 99999865 999999999999999999999999999999999999986542211 111001112234455554333211
Q ss_pred ---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 252 ---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 252 ---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
.+...+.|+++.|+|.|+.++++.+++++|+++||++|.+++++.++.++. ++.+||+|.||+..
T Consensus 250 ~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sGgn~ 317 (420)
T PRK08639 250 LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISGGNN 317 (420)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCCCCC
Confidence 123456899999999999999999999999999999999999998765444 77899999998764
No 45
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-47 Score=365.18 Aligned_cols=277 Identities=22% Similarity=0.252 Sum_probs=226.9
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
.+++..+.+|||++++.+ +||+|+|++|||||||||++.+++..+.+.+.. +.||++|+||||+|+|++|+
T Consensus 31 ~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~---~~VV~aSsGN~G~alA~aa~ 101 (349)
T PRK08813 31 ARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE---RPVICASAGNHAQGVAWSAY 101 (349)
T ss_pred HHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC---CeEEEECCCHHHHHHHHHHH
Confidence 455667889999998765 499999999999999999999999999998863 36999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE 174 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e 174 (404)
.+|++|+||||..+++.|+++++.|||+|+.++. +|+ +.++.+++++++. +.+|+++|.||. .+.|+.++|+|
T Consensus 102 ~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~---~a~~~a~~la~~~-g~~~v~~~~np~-~i~G~~Tig~E 174 (349)
T PRK08813 102 RLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYD---EAYAFARELADQN-GYRFLSAFDDPD-VIAGQGTVGIE 174 (349)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEcCccCChH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999975 454 4466788888875 678899999997 67899999999
Q ss_pred HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc---cccc
Q psy14801 175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS---FAAT 251 (404)
Q Consensus 175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~ 251 (404)
|++| .||++|+|+|+||+++|++.+++. +++|||+|||++++.+.....+.........+.+++++.. ..+.
T Consensus 175 I~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~ 249 (349)
T PRK08813 175 LAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTR 249 (349)
T ss_pred HHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHH
Confidence 9976 489999999999999999999985 6789999999998543221111111111123445554432 1222
Q ss_pred ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
.+.....|.++.|+|.|+.++++.+++++|+++||++|.+++++.+ ..+.+|++|.||+..
T Consensus 250 ~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~-----~~~~~v~~vlsGgN~ 310 (349)
T PRK08813 250 RLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRR-----VSGKRKCAVVSGGNI 310 (349)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHH-----hCCCCEEEEECCCCC
Confidence 3345678999999999999999999999999999999999999764 145689999999864
No 46
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.2e-47 Score=376.62 Aligned_cols=302 Identities=23% Similarity=0.227 Sum_probs=240.7
Q ss_pred ccCCCCCCC-------cCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe
Q psy14801 8 SNSARNSPF-------TPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79 (404)
Q Consensus 8 ~~~~~~~~~-------~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~ 79 (404)
...||++++ +++++|+|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.++|. ++||+
T Consensus 45 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~~vv~ 120 (397)
T PRK06260 45 RGVWRYKELLPVKKKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----KTVAC 120 (397)
T ss_pred cceeeehhhcCCCCCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----CEEEE
Confidence 457777655 4578999999999999888887 99999999999999999999999999999987 78999
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCC
Q psy14801 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158 (404)
Q Consensus 80 ~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~ 158 (404)
+|+||+|+|+|++|+.+|++|+||||.. ++..|+.+++.+||+|+.+++ ++++ +++.+++++++. +.++++++
T Consensus 121 aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~---~~~~a~~~~~~~-g~y~~~~~ 194 (397)
T PRK06260 121 ASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDD---ALDMVVELAKEG-KIYLLNSI 194 (397)
T ss_pred eCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHH---HHHHHHHHHhhC-CEEeecCC
Confidence 9999999999999999999999999997 789999999999999999986 4543 456688887765 56666766
Q ss_pred CCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccC-CCCC
Q psy14801 159 RNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQ-SLND 230 (404)
Q Consensus 159 ~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~-~~~~ 230 (404)
||.+ +.|+.++|+||++|+.+ .||++|+|+|+|++++|++.+|+...+ -.|+|+|+|.++...... ..+.
T Consensus 195 -np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~ 272 (397)
T PRK06260 195 -NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGK 272 (397)
T ss_pred -Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCC
Confidence 8974 67899999999999986 699999999999999999999988652 259999999998543211 0011
Q ss_pred C--CCCCCccccccCC--CCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--
Q psy14801 231 V--PENQISYNEVEGI--GYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-- 301 (404)
Q Consensus 231 ~--~~~~~~~~~~~~i--~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-- 301 (404)
. .......+...++ +.... +.. ..+...+..+.|+|.|+.++++++++++|++++|+||.+++|+.++.++
T Consensus 273 ~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~ 352 (397)
T PRK06260 273 DEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGV 352 (397)
T ss_pred CcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCC
Confidence 0 0000111222222 11111 111 1123446789999999999999999999999999999999999988775
Q ss_pred cCCCCeEEEEecCCCCCccc
Q psy14801 302 LRPDQRCVVILADGVRNYLT 321 (404)
Q Consensus 302 ~~~~~~vv~v~~~~~~~~~~ 321 (404)
..++.+||++.||++.+...
T Consensus 353 i~~~~~VV~i~tG~glK~~~ 372 (397)
T PRK06260 353 IDKDERVVCITTGHLLKDPD 372 (397)
T ss_pred CCCCCeEEEEeCCCccCchH
Confidence 45788999999999987643
No 47
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.1e-47 Score=373.31 Aligned_cols=292 Identities=19% Similarity=0.196 Sum_probs=237.9
Q ss_pred CCCCCCCeeecCCCCCCC--------CCeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC---------
Q psy14801 19 TVPGKVPLLPQSKQGSIL--------LPTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY--------- 75 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~--------g~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~--------- 75 (404)
+++++|||++++++++.+ +.+||+|+|++|| |||||||++.+++.. +++.|.++|++
T Consensus 66 ~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~ 145 (431)
T TIGR02035 66 GGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKK 145 (431)
T ss_pred CCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchh
Confidence 489999999999987733 5699999999999 999999999998864 66788877764
Q ss_pred --------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 76 --------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 76 --------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
+||++||||||+|+|++|+.+|++|+||||++++..|+++|+.|||+|+.++. +|+ +.++.++++++
T Consensus 146 ~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~---~a~~~A~~la~ 220 (431)
T TIGR02035 146 FKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYG---VAVEEGRKNAD 220 (431)
T ss_pred hhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999986 454 44677888888
Q ss_pred hCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCC
Q psy14801 148 QMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPF 218 (404)
Q Consensus 148 ~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~ 218 (404)
+.++.+|.++ .|+.+.+.||.++|+||++|+.. .||.+++++|+||+++||+.+++.. .|++|||+|+|.
T Consensus 221 ~~~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~ 299 (431)
T TIGR02035 221 ADPMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPT 299 (431)
T ss_pred hcCCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 7666677665 56667889999999999999953 4779999999999999999999997 789999999999
Q ss_pred CCcccccC-CCCCC----CC--CCCccccccCCCCcccccc---cCccccCcEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801 219 GSILAQPQ-SLNDV----PE--NQISYNEVEGIGYSFAATT---LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSS 288 (404)
Q Consensus 219 ~~~~~~~~-~~~~~----~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~t 288 (404)
+++.+... ..+.. .. .....+.+++++....... +.+..+|.++.|+|.|+.++++.+++.+|+++||++
T Consensus 300 ~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSs 379 (431)
T TIGR02035 300 HSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSA 379 (431)
T ss_pred CCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHH
Confidence 98643211 00100 00 0022455666655433221 123467899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhc-------C------CCCeEEEEecCCC
Q psy14801 289 GTAMHVACQAAKSL-------R------PDQRCVVILADGV 316 (404)
Q Consensus 289 g~tlag~~~~lk~~-------~------~~~~vv~v~~~~~ 316 (404)
|++++|+.++++.. . ++.+.+++.||++
T Consensus 380 aa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~ 420 (431)
T TIGR02035 380 LAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGG 420 (431)
T ss_pred HHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCC
Confidence 99999998876652 1 4678899999885
No 48
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5.7e-48 Score=378.11 Aligned_cols=281 Identities=22% Similarity=0.287 Sum_probs=233.8
Q ss_pred CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEE
Q psy14801 24 VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVV 103 (404)
Q Consensus 24 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv 103 (404)
|||+++++|++..|++||+|+|++|||||||||++.+++..+.+++.. .+||++|+||||+|+|++|+++|++|+||
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~~~G~~~~iv 77 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ---RGVVAASAGNHAQGVAYAAKKFGIKAVIV 77 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC---CEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 899999999998899999999999999999999999999999887753 47999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCc
Q psy14801 104 MPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKV 183 (404)
Q Consensus 104 ~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~ 183 (404)
||..++..|+++++.|||+|+.++. +++ ++++.+++++++. +.+|+++|.||. .+.|+.++++||++|+. .|
T Consensus 78 ~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~a~~~a~~~~~~~-~~~~~~~~~~~~-~~~g~~t~~~Ei~~q~~-~~ 149 (380)
T TIGR01127 78 MPESAPPSKVKATKSYGAEVILHGD--DYD---EAYAFATSLAEEE-GRVFVHPFDDEF-VMAGQGTIGLEIMEDIP-DV 149 (380)
T ss_pred EcCCCcHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCCCCChh-hhhhhHHHHHHHHHhCC-CC
Confidence 9999999999999999999999975 343 4567788888775 678889999997 57899999999999997 79
Q ss_pred CEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---cccccCccccC
Q psy14801 184 DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---AATTLDRNVID 259 (404)
Q Consensus 184 ~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~ 259 (404)
|++|+|+|+||+++|++.+++...|++|+|+|+|.+++.+.... .+.........+..++++... .+..+...++|
T Consensus 150 D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd 229 (380)
T TIGR01127 150 DTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVD 229 (380)
T ss_pred CEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999986542110 011000111223344443211 12223346789
Q ss_pred cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV 316 (404)
Q Consensus 260 ~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~ 316 (404)
.++.|+|.|+.++++++++++|++++|+++.+++++.+... ..++.+||++.||+.
T Consensus 230 ~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~-~~~~~~vv~i~sGGn 285 (380)
T TIGR01127 230 DVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKV-DVKGKKIAVVLSGGN 285 (380)
T ss_pred EEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCcc-ccCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999876432 246789999999975
No 49
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=2.8e-47 Score=364.87 Aligned_cols=287 Identities=22% Similarity=0.232 Sum_probs=230.2
Q ss_pred CCCCCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 19 TVPGKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++|. ++||++|+||||+|+|++|+.+|
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~~lv~aSsGN~g~alA~~aa~~G 86 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY----SGITVGTCGNYGASIAYFARLYG 86 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC----CEEEEeCCcHHHHHHHHHHHHcC
Confidence 3589999999999998888 599999999999999999999999999999997 78999999999999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCC-CCCChhhHHhhHHHHHH
Q psy14801 98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFR-NPNNPLSHYETTAEEIL 176 (404)
Q Consensus 98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~-np~~si~g~~~~a~ei~ 176 (404)
++|+||||..++..|+++|+.+||+|+.++. +++ +.++.++++.++. +.|+.+++. ||..-+.||.++|+||+
T Consensus 87 ~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 160 (319)
T PRK06381 87 LKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYE---EAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIY 160 (319)
T ss_pred CcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHH---HHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHH
Confidence 9999999999999999999999999999986 333 4566778887764 567777875 77334689999999999
Q ss_pred HHhCCCcCEEEEccCCChhHHHHHHHHHHh------CCCcEEEEEcCCCCcccccC-CCCCCCC-CCCcccccc-CCCCc
Q psy14801 177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEK------CPSCKLVGADPFGSILAQPQ-SLNDVPE-NQISYNEVE-GIGYS 247 (404)
Q Consensus 177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~------~~~~~vi~V~p~~~~~~~~~-~~~~~~~-~~~~~~~~~-~i~~~ 247 (404)
+|+...||++|+++|+|++++|++.+++.. .|..|+++|+|.++...... ..+.... ......... .+...
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 240 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEP 240 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCC
Confidence 999867999999999999999999999998 78899999999887432111 0000000 000000000 01111
Q ss_pred cc-----c----cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801 248 FA-----A----TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315 (404)
Q Consensus 248 ~~-----~----~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~ 315 (404)
.. . ..+...+.+..+.++|+|++++++++++++|++++|++|.+++|+.++.++...+.+||+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tGg 317 (319)
T PRK06381 241 LVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITGR 317 (319)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 10 0 00112344578999999999999999999999999999999999999888754457899999986
No 50
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-47 Score=363.44 Aligned_cols=287 Identities=23% Similarity=0.302 Sum_probs=230.8
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA 93 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a 93 (404)
++.+...+++|||+++++++.+ +.+||+|+|++|||||||||++.+++..+.+ ++++||++|+||||+|+|++|
T Consensus 14 ~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-----~~~~vv~aSsGN~g~a~A~~a 87 (310)
T PRK08246 14 AQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-----PAAGVVAASGGNAGLAVAYAA 87 (310)
T ss_pred HHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-----cCCeEEEeCCCHHHHHHHHHH
Confidence 3456677899999999999876 7899999999999999999999999988765 237899999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.+|++|+||||..+++.|+++++.+||+|+.++. .++ +.++.+++++++. +.+|+++|.||. .+.||.++|+
T Consensus 88 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~n~~-~i~g~~t~~~ 160 (310)
T PRK08246 88 AALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYA---DALEAAQAFAAET-GALLCHAYDQPE-VLAGAGTLGL 160 (310)
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEeCCCCCChh-hhcchHHHHH
Confidence 99999999999999999999999999999999985 333 4566778887765 678899999998 4689999999
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc---
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA--- 249 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--- 249 (404)
||++|+. .||++|+++|+|++++|++.+++. ..|+++|+|.+++.+... ..+.............+++....
T Consensus 161 Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~ 236 (310)
T PRK08246 161 EIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEI 236 (310)
T ss_pred HHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHH
Confidence 9999986 799999999999999999999964 369999999998643211 00110001111111222222222
Q ss_pred ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
+..+.+...+.++.|+|.|+.++++.+++++|++++|++|.+++++.+...+..++.+||+|.||++.
T Consensus 237 ~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 237 AFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCGANT 304 (310)
T ss_pred HHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECCCCC
Confidence 22234557899999999999999999999999999999999999986544333467899999999865
No 51
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.8e-47 Score=375.51 Aligned_cols=292 Identities=21% Similarity=0.267 Sum_probs=236.1
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
..+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.. .. ..||++|+||||+++|++|+
T Consensus 8 ~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~~--~gvv~aSsGN~g~a~A~~a~ 84 (409)
T TIGR02079 8 KRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-LA--KGVVCASAGNHAQGFAYACR 84 (409)
T ss_pred HHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-hC--CEEEEECccHHHHHHHHHHH
Confidence 3455678899999999999888899999999999999999999999998753322 12 46999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEE---EeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKII---RTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT 171 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~---~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~ 171 (404)
++|++|+||||..++..|+++++.|||+++ .++. +| ++.++.+.+++++. +.+|+++|.||. .+.|+.++
T Consensus 85 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~---~~a~~~a~~~~~~~-g~~~~~~~~~~~-~~~g~~ti 157 (409)
T TIGR02079 85 HLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TF---DQCAAAAREHVEDH-GGTFIPPFDDPR-IIEGQGTV 157 (409)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CH---HHHHHHHHHHHHhc-CCEEeCCCCCHh-HhhhhHHH
Confidence 999999999999999999999999999743 3432 34 34567788888775 568889999997 57889999
Q ss_pred HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcccc
Q psy14801 172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFAA 250 (404)
Q Consensus 172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~ 250 (404)
|+||++|+...||++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+... ..+.........+.+++++....+
T Consensus 158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g 237 (409)
T TIGR02079 158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVG 237 (409)
T ss_pred HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCc
Confidence 9999999986699999999999999999999999999999999999998654321 111100011122344554433322
Q ss_pred c---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 251 T---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 251 ~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
. .+....+|.++.|+|.|+.++++.+++++|+++||++|.+++++.++.++ .++.+||+|.||+.-
T Consensus 238 ~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~-~~~~~Vv~ilsGgn~ 306 (409)
T TIGR02079 238 DLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE-IKGKTVVCVVSGGNN 306 (409)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh-cCCCeEEEEECCCCC
Confidence 1 12245678999999999999999999999999999999999999876544 468899999998764
No 52
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.7e-47 Score=362.99 Aligned_cols=273 Identities=21% Similarity=0.217 Sum_probs=217.9
Q ss_pred CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
++++++|+|||++.+ +||+|+|++|||||||||++.++++++.+.|. ++|+++||||+|.|+|++|+.
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~----~~vv~aSsGN~g~slA~~aa~ 118 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI----KQISEDSSGNAGASIAAYGAA 118 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CEEEEECCcHHHHHHHHHHHH
Confidence 578999999999975 59999999999999999999999999999886 789999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||++++..|+++|+.|||+|+.+++ ++++ +.+++++. +.+|++++.||. .+.|+.++|+||
T Consensus 119 ~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~-------~~~~a~~~-g~~~~~~~~np~-~ieG~kTia~EI 187 (338)
T PRK06450 119 AGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SRED-------VAKAAENS-GYYYASHVLQPQ-FRDGIRTLAYEI 187 (338)
T ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHH-------HHHHHHhc-CeEeccCCCCcc-HHHHHHHHHHHH
Confidence 999999999999999999999999999999986 3432 23334443 568888899997 578999999999
Q ss_pred HHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCC-CCCccccccCCCCc
Q psy14801 176 LRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPE-NQISYNEVEGIGYS 247 (404)
Q Consensus 176 ~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 247 (404)
++|+.+ .||++|+|+|+|++++|++.+|+...+ ..|+|+|||+++........+.... .....+...++...
T Consensus 188 ~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~ 267 (338)
T PRK06450 188 AKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVST 267 (338)
T ss_pred HHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecC
Confidence 999984 599999999999999999999998653 2599999999975432111111000 01112223333211
Q ss_pred cccccc------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc
Q psy14801 248 FAATTL------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319 (404)
Q Consensus 248 ~~~~~~------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~ 319 (404)
. |... .+.. +..+.|+|.|+.++++++++ +|++++|++|.+++|+.++ ++.+||++.|+++.|-
T Consensus 268 ~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK~ 337 (338)
T PRK06450 268 R-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLKV 337 (338)
T ss_pred C-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCccC
Confidence 1 1111 1223 67899999999999999987 6999999999999998774 3468999999998663
No 53
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.7e-47 Score=381.61 Aligned_cols=290 Identities=21% Similarity=0.252 Sum_probs=239.5
Q ss_pred cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAI 95 (404)
Q Consensus 17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~ 95 (404)
+...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+. +. ..||++|+||||+++|++|++
T Consensus 14 v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~----~gvV~aSaGNha~avA~aa~~ 89 (504)
T PRK09224 14 VYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLA----RGVITASAGNHAQGVALSAAR 89 (504)
T ss_pred hcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcC----CEEEEECcCHHHHHHHHHHHH
Confidence 4456789999999999998999999999999999999999999999887533 33 579999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175 (404)
Q Consensus 96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei 175 (404)
+|++|+||||..++..|++.++.+||+|+.++. +|+ ++++.+.+++++. +.+|+++|.||. .+.|+.++|+||
T Consensus 90 lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~---~a~~~a~~l~~~~-g~~~v~~f~~~~-~i~G~gTi~~EI 162 (504)
T PRK09224 90 LGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFD---EAYAHAIELAEEE-GLTFIHPFDDPD-VIAGQGTIAMEI 162 (504)
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEeCCCCCcH-HHHhHHHHHHHH
Confidence 999999999999999999999999999999975 454 4567788888875 678889999997 678999999999
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---AT 251 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~ 251 (404)
++|+...||++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+...........+++++...+ ..
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 9999856999999999999999999999999999999999999986543211 1110001111223344432221 11
Q ss_pred ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14801 252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVR 317 (404)
Q Consensus 252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~ 317 (404)
.+...++|..+.|+|.|+.++++.++++++++++|+||.+++|+.++.++. .++.+||+|.||++-
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~ 309 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANM 309 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC
Confidence 223567899999999999999999999999999999999999999887653 257899999999864
No 54
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.9e-47 Score=375.20 Aligned_cols=296 Identities=21% Similarity=0.186 Sum_probs=234.2
Q ss_pred ccCCCCCCCc-------CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEec
Q psy14801 8 SNSARNSPFT-------PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEP 80 (404)
Q Consensus 8 ~~~~~~~~~~-------~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ 80 (404)
...||+++++ ++++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.++++.|. ++||++
T Consensus 44 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~----~~vv~a 118 (442)
T PRK05638 44 PGVWRYKELLPQVKKIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA----NGFIVA 118 (442)
T ss_pred CChhhhhhhCCCcCCccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC----CEEEEe
Confidence 4678887664 4689999999994 666678899999999999999999999999999998886 789999
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCC
Q psy14801 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160 (404)
Q Consensus 81 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~n 160 (404)
|+||+|+|+|++|+.+|++|+||||.+++..|+.+++.+||+|+.+++ +++ ++++.+++++++. +.|+++++.|
T Consensus 119 SsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~n 192 (442)
T PRK05638 119 SDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVD---EAIEYAEELARLN-GLYNVTPEYN 192 (442)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHH---HHHHHHHHHHHhC-CeEecCCCCC
Confidence 999999999999999999999999999999999999999999999985 343 4466788887664 5778888999
Q ss_pred CCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCC
Q psy14801 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPEN 234 (404)
Q Consensus 161 p~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~ 234 (404)
|. .+.|+.++|+||++|+. ||++|+|+|+|++++|++.+|+...+ -.|+++|||+++........... .
T Consensus 193 p~-~~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~--~ 267 (442)
T PRK05638 193 II-GLEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNK--T 267 (442)
T ss_pred hh-HhhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCC--C
Confidence 98 46789999999999996 99999999999999999999998653 24999999988753321100110 0
Q ss_pred CCccccccCC--CCccccc---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCe
Q psy14801 235 QISYNEVEGI--GYSFAAT---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQR 307 (404)
Q Consensus 235 ~~~~~~~~~i--~~~~~~~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~ 307 (404)
....+...++ +...... ...+...+.++.++|.++..+.+.++ ++|++++|++|++++|+.++.++ ..++.+
T Consensus 268 ~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~ 346 (442)
T PRK05638 268 KCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDK 346 (442)
T ss_pred CCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCe
Confidence 0111122222 1111100 00112345677888888887776665 47999999999999999998876 467889
Q ss_pred EEEEecCCCCCcc
Q psy14801 308 CVVILADGVRNYL 320 (404)
Q Consensus 308 vv~v~~~~~~~~~ 320 (404)
||++.||++.+..
T Consensus 347 Vv~i~tG~g~k~~ 359 (442)
T PRK05638 347 VVLVVTGSGLKGY 359 (442)
T ss_pred EEEEeCCCCCCCC
Confidence 9999999987764
No 55
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=8e-46 Score=342.09 Aligned_cols=243 Identities=39% Similarity=0.557 Sum_probs=223.5
Q ss_pred CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEE
Q psy14801 24 VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVV 103 (404)
Q Consensus 24 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv 103 (404)
|||++++++++..+.+||+|+|++|||||||||++.+++..+.++|.+ |+.+||++|+||+|.|+|++|+.+|++|++|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~ 79 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKGVIIESTGGNTGIALAAAAARLGLKCTIV 79 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence 899999999987788999999999999999999999999999999865 5689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-C
Q psy14801 104 MPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG-K 182 (404)
Q Consensus 104 ~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~-~ 182 (404)
+|...+..|+++|+.+|++|+.++. +++ ++.+.+++++++.++.+|+++|.||. .+.|+.++++||++|+.+ .
T Consensus 80 ~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~-~~~g~~~~~~Ei~~q~~~~~ 153 (244)
T cd00640 80 MPEGASPEKVAQMRALGAEVVLVPG--DFD---DAIALAKELAEEDPGAYYVNQFDNPA-NIAGQGTIGLEILEQLGGQK 153 (244)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhCCCCEecCCCCCHH-HHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999986 343 44677888888756788999999997 466778999999999987 5
Q ss_pred cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccCcEE
Q psy14801 183 VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWG 262 (404)
Q Consensus 183 ~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 262 (404)
||++|+|+|+|++++|++.+++...|..||++|+| .++
T Consensus 154 ~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~------------------------------------------~~~ 191 (244)
T cd00640 154 PDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------------------------EVV 191 (244)
T ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee------------------------------------------eEE
Confidence 99999999999999999999999999999999999 567
Q ss_pred ecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801 263 KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315 (404)
Q Consensus 263 ~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~ 315 (404)
.|+|.|++++++++++++|++++|+||.+++++.++.++..++.+||++.||+
T Consensus 192 ~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~ 244 (244)
T cd00640 192 TVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244 (244)
T ss_pred EECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 89999999999999999999999999999999999888776788999999975
No 56
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.7e-45 Score=354.17 Aligned_cols=289 Identities=21% Similarity=0.181 Sum_probs=229.6
Q ss_pred CcCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 16 FTPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 16 ~~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
.+.+.+|+|||++++++...+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|+
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~~vv~aSsGN~g~a~A~~a~ 91 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN----DTVLCASTGNTGAAAAAYAG 91 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC----CEEEEeCCcHHHHHHHHHhc
Confidence 45567899999999999888887 99999999999999999999999999998886 68999999999999999999
Q ss_pred HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCC--CCChhhHHhhH
Q psy14801 95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN--PNNPLSHYETT 171 (404)
Q Consensus 95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~n--p~~si~g~~~~ 171 (404)
.+|++|+||||.. +++.|+.+++.+||+|+.+++ ++++ +.+.++++.++. ..++ ....| |.+ +.||.++
T Consensus 92 ~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~---~~~~~~~~~~~~-~~~~-~~~~n~~~~~-~~g~~t~ 163 (328)
T TIGR00260 92 KAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDD---AQRLVKQLFGDK-EALG-LNSVNSIPYR-LEGQKTY 163 (328)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHH---HHHHHHHHHhhc-Ceee-cccCCCCCeE-eeeehhH
Confidence 9999999999998 899999999999999999986 4554 355677777754 2333 33455 653 5778899
Q ss_pred HHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCccccc-C-CCCCCCCCCCccccc
Q psy14801 172 AEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQP-Q-SLNDVPENQISYNEV 241 (404)
Q Consensus 172 a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~-~-~~~~~~~~~~~~~~~ 241 (404)
++||++|+.. .||.+|+++|+||+++|++.+++.. .| ++++|+|.++..... . .-+.........+..
T Consensus 164 ~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~ 241 (328)
T TIGR00260 164 AFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLS 241 (328)
T ss_pred HHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccC
Confidence 9999999985 7999999999999999999999874 56 999999999832211 0 001000000111222
Q ss_pred cCCCCcccccc------cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEec
Q psy14801 242 EGIGYSFAATT------LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILA 313 (404)
Q Consensus 242 ~~i~~~~~~~~------~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~ 313 (404)
.++.... |.. +.....+..+.++|.|+.++++++++++|++++|+||.+++++.++.++ ..++.+||++.|
T Consensus 242 ~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~t 320 (328)
T TIGR00260 242 TAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALT 320 (328)
T ss_pred cceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEec
Confidence 3322111 111 1224567899999999999999999999999999999999999988764 356789999999
Q ss_pred CCCCCc
Q psy14801 314 DGVRNY 319 (404)
Q Consensus 314 ~~~~~~ 319 (404)
|++.+.
T Consensus 321 G~~~k~ 326 (328)
T TIGR00260 321 GNGLKD 326 (328)
T ss_pred CCCCCC
Confidence 998765
No 57
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.7e-45 Score=360.14 Aligned_cols=292 Identities=22% Similarity=0.211 Sum_probs=228.1
Q ss_pred CCCCCCCeeecCCCCCCCC-CeEEEEeCCC-CCCCChhhHHHHHHHHHHHH--hCCC-----------------CCCCEE
Q psy14801 19 TVPGKVPLLPQSKQGSILL-PTTDAKCEFM-NPTGSLKDRAAWRMIEDAET--AGVL-----------------KPGYTI 77 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~-----------------~~~~~v 77 (404)
...++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+..+.. .+.. .++.+|
T Consensus 40 ~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 119 (399)
T PRK08206 40 PGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITF 119 (399)
T ss_pred CCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEE
Confidence 3678999999999999888 5999999998 59999999999988877653 2220 134579
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec-
Q psy14801 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD- 156 (404)
Q Consensus 78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~- 156 (404)
|++|+||||+|+|++|+.+|++|+||||..+++.|+.+|+.+||+|+.++. +++ +.++.+.+++++. +++|+.
T Consensus 120 v~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~---~~~~~a~~~~~~~-g~~~v~~ 193 (399)
T PRK08206 120 ATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYD---DSVRLAAQEAQEN-GWVVVQD 193 (399)
T ss_pred EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHHc-CCEEecC
Confidence 999999999999999999999999999999999999999999999999986 343 4466677877765 456664
Q ss_pred ----CCCC-CCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhC--CCcEEEEEcCCCCcccccC
Q psy14801 157 ----QFRN-PNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKC--PSCKLVGADPFGSILAQPQ 226 (404)
Q Consensus 157 ----e~~n-p~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~--~~~~vi~V~p~~~~~~~~~ 226 (404)
+|.| |.+.+.||.++|+||++|+.+ .||++|+|+|+||+++|++.+++... +..|+++|||+++..+...
T Consensus 194 ~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s 273 (399)
T PRK08206 194 TAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQS 273 (399)
T ss_pred ccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHH
Confidence 6765 556789999999999999985 59999999999999999999999874 4689999999998653211
Q ss_pred -CCCCCCCCC-CccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHH----hcCcEeccchhhHHHHHHH
Q psy14801 227 -SLNDVPENQ-ISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIK----SEGLLVGGSSGTAMHVACQ 297 (404)
Q Consensus 227 -~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~----~~gi~~~~~tg~tlag~~~ 297 (404)
..+...... ...+...++.... .+..+.....|.++.|+|.|+.++++++++ ++|+++||++|.+++++.+
T Consensus 274 ~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~ 353 (399)
T PRK08206 274 AVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAA 353 (399)
T ss_pred HHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHH
Confidence 111100000 0123334442221 122223456789999999999999999996 7899999999999999986
Q ss_pred HHH-----------hcCCCCeEEEEecCCC
Q psy14801 298 AAK-----------SLRPDQRCVVILADGV 316 (404)
Q Consensus 298 ~lk-----------~~~~~~~vv~v~~~~~ 316 (404)
+.. ...++.+||++.|++.
T Consensus 354 ~~~~~~~~~~~~~~~i~~~~~Vv~iltgG~ 383 (399)
T PRK08206 354 LMTDPDYQELREKLGLDEDSRVLLISTEGD 383 (399)
T ss_pred HHhcchhhHHHHhcCCCCCCEEEEEECCCC
Confidence 541 2346789999999664
No 58
>KOG1250|consensus
Probab=100.00 E-value=9.3e-45 Score=334.90 Aligned_cols=288 Identities=22% Similarity=0.253 Sum_probs=240.9
Q ss_pred CCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe
Q psy14801 20 VPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99 (404)
Q Consensus 20 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~ 99 (404)
+.-.|||.+.-.|+...|.++|+|+|++||+||||.||+.+++...-++++. ..|+++|.||||.|+|++|+++|++
T Consensus 63 ~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~---~gViasSaGNha~a~Ayaa~~Lgip 139 (457)
T KOG1250|consen 63 VIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKK---AGVIASSAGNHAQAAAYAARKLGIP 139 (457)
T ss_pred ceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhc---CceEEecCccHHHHHHHHHHhcCCc
Confidence 4557999999889999999999999999999999999999999888776642 5799999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT 179 (404)
Q Consensus 100 ~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~ 179 (404)
++||||..+|..|.+.++.+||+|++.+. +++++ ...|.+++++. +..|+++|++|. .++|+.+++.||++|+
T Consensus 140 aTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deA---k~~a~~lAke~-gl~yI~pfDhP~-I~aGqgTig~EIl~ql 212 (457)
T KOG1250|consen 140 ATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEA---KAFAKRLAKEN-GLTYIPPFDHPD-IWAGQGTIGLEILEQL 212 (457)
T ss_pred eEEEecCCChHHHHHHHhccCCEEEEecc--cHHHH---HHHHHHHHHhc-CceecCCCCCch-hhcCcchHHHHHHHhh
Confidence 99999999999999999999999999875 56554 45588999876 788999999997 7899999999999999
Q ss_pred CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC-CCCCCCccccccCCCCcccccc---cCc
Q psy14801 180 GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND-VPENQISYNEVEGIGYSFAATT---LDR 255 (404)
Q Consensus 180 ~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~---~~~ 255 (404)
...+++++||+|+||+++||+.+++...|.+++|+|++.++..+...-... .-..+.....+.+++...+..+ +..
T Consensus 213 ~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~ 292 (457)
T KOG1250|consen 213 KEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQ 292 (457)
T ss_pred cCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHH
Confidence 977779999999999999999999999999999999999986543211111 1111222344455544333221 234
Q ss_pred cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR 317 (404)
Q Consensus 256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~ 317 (404)
.++|..+.|++.||..++.++.+++..+++|++|.+++++..+.....++.++|.+.++++-
T Consensus 293 ~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n~ 354 (457)
T KOG1250|consen 293 KLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSGGNI 354 (457)
T ss_pred hcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccccccCCceEEeecccCCC
Confidence 57789999999999999999999999999999999999999983334577889999988754
No 59
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-43 Score=344.71 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=222.4
Q ss_pred CCCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCe
Q psy14801 22 GKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYK 99 (404)
Q Consensus 22 g~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~ 99 (404)
.+|||++++++++.+ +.+||+|+|++|||||||||++..++..+.++|. ..+|+ +|+||||+|+|++|+.+|++
T Consensus 33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~alA~~a~~~G~~ 108 (365)
T cd06446 33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVATATACALFGLE 108 (365)
T ss_pred CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHhCCC
Confidence 489999999998877 5799999999999999999999999999988886 45555 79999999999999999999
Q ss_pred EEEEecCCCC---HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCC-cEeecCCC--C--CCChhhHHhh
Q psy14801 100 MVVVMPMKMS---KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKN-AVVLDQFR--N--PNNPLSHYET 170 (404)
Q Consensus 100 ~~iv~p~~~~---~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~-~~~~~e~~--n--p~~si~g~~~ 170 (404)
|+||||...+ +.|+++|+.+||+|+.++.. ++...+.++.+ +...++.++ .|++.++. | +.+.+.|+.+
T Consensus 109 ~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t 186 (365)
T cd06446 109 CEIYMGAVDVERQPLNVFRMELLGAEVVPVPSG--SGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSV 186 (365)
T ss_pred eEEEEcCCccccccchHHHHHHCCCEEEEeCCC--CCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhH
Confidence 9999998643 36788999999999999863 22222333333 333333223 33334432 2 3345789999
Q ss_pred HHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC----CCC----------
Q psy14801 171 TAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN----DVP---------- 232 (404)
Q Consensus 171 ~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~----~~~---------- 232 (404)
+|+||++|+.+ .||++|+++|+|++++|++.+++. .+.+|||+|+|.+++.+...... ...
T Consensus 187 ~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~ 265 (365)
T cd06446 187 IGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYT 265 (365)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhc
Confidence 99999999863 599999999999999999998876 46899999999988654321000 000
Q ss_pred ------CCCCccccccCCCCc-ccccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC
Q psy14801 233 ------ENQISYNEVEGIGYS-FAATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR 303 (404)
Q Consensus 233 ------~~~~~~~~~~~i~~~-~~~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~ 303 (404)
......+...+++.. ..+.. +.....+.++.|+|.|+.++++++++++|+++||+||++++|+.++.++.+
T Consensus 266 ~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~~ 345 (365)
T cd06446 266 LQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLG 345 (365)
T ss_pred cccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhcC
Confidence 000111222233211 11111 223456889999999999999999999999999999999999999988776
Q ss_pred CCCeEEEEecCCCCCcccc
Q psy14801 304 PDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 304 ~~~~vv~v~~~~~~~~~~~ 322 (404)
++.+||+|.||.+.+|+++
T Consensus 346 ~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 346 KEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CCCeEEEEeCCCCcccccc
Confidence 6789999999999888754
No 60
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.9e-44 Score=351.25 Aligned_cols=302 Identities=19% Similarity=0.138 Sum_probs=233.2
Q ss_pred ccCCCCCCCcC-----CCCCCCCeeecCCCCCCCCC-eEEEEeCC-------CCCCCChhhHHHHHHHHHHHHhCCCCCC
Q psy14801 8 SNSARNSPFTP-----TVPGKVPLLPQSKQGSILLP-TTDAKCEF-------MNPTGSLKDRAAWRMIEDAETAGVLKPG 74 (404)
Q Consensus 8 ~~~~~~~~~~~-----~~~g~TPl~~~~~l~~~~g~-~l~~K~E~-------~~ptGS~K~R~a~~~l~~a~~~g~~~~~ 74 (404)
...||+++|++ +.+|.|||++.++|++.+|+ +||+|+|. +|||||||||++.+++..+.+.|.
T Consensus 42 ~~~wry~~~lP~~~~~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~---- 117 (398)
T TIGR03844 42 PGIFRYYDWLPVTGHLRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG---- 117 (398)
T ss_pred CchhhhHhhCCCCCCCCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC----
Confidence 46788887776 45678999999999998998 99995555 899999999999999999999885
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 154 (404)
+.||++|+||||+|+|++|+++|++|+||||.+++..+...++.+|++|+.+++ +|++ +.+.+++++++. +.+.
T Consensus 118 ~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~---a~~~a~~~a~~~-g~~~ 191 (398)
T TIGR03844 118 KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTD---AIALADRIATLP-GFVP 191 (398)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHH---HHHHHHHHHHhC-Cccc
Confidence 789999999999999999999999999999998654434445789999999986 4554 456688887765 3333
Q ss_pred ecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHH---------hCCCcEEEEEcCCCCccccc
Q psy14801 155 LDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE---------KCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 155 ~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~---------~~~~~~vi~V~p~~~~~~~~ 225 (404)
...+.||. .+.|+.++++||++|+.+.||++|+|+|+|.++.|++.++.. +.| |+++|||+++..+..
T Consensus 192 ~~~~~~p~-~ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P--~l~~VQ~eg~~p~~~ 268 (398)
T TIGR03844 192 EGGARNVA-RRDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLP--RLHLAQNLPFVPMVN 268 (398)
T ss_pred cCCCCCHH-HHhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCC--CEEEEEcCCchHHHH
Confidence 35667886 789999999999999984599999999999878888888877 336 889999999854321
Q ss_pred C-CCCC---CC--CCCCc-----cccccCCCCccccc-------ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801 226 Q-SLND---VP--ENQIS-----YNEVEGIGYSFAAT-------TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS 287 (404)
Q Consensus 226 ~-~~~~---~~--~~~~~-----~~~~~~i~~~~~~~-------~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~ 287 (404)
. ..+. .+ ..+.. .+..+++.....+. ...+...+..+.|+|.||.++++.+++++|++++|+
T Consensus 269 a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa 348 (398)
T TIGR03844 269 AWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPA 348 (398)
T ss_pred HHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccccc
Confidence 1 1111 00 00000 12333332111111 112345678999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcccc
Q psy14801 288 SGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 288 tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~~ 322 (404)
+|.++||+.++.++ ..++.+||++.||++.+.+..
T Consensus 349 ~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 349 AAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 99999999998765 457889999999999776553
No 61
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2e-43 Score=341.82 Aligned_cols=299 Identities=21% Similarity=0.192 Sum_probs=223.1
Q ss_pred CCCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 19 TVPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 19 ~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
..+| +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+. ..|+++|+||||+|+|++|+++
T Consensus 53 ~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~---~vIaetgaGnhG~A~A~~aa~~ 129 (397)
T PRK04346 53 NYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKK---RIIAETGAGQHGVATATAAALL 129 (397)
T ss_pred HhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCC---eEEEecCcHHHHHHHHHHHHHc
Confidence 4566 59999999999988 57999999999999999999999999999998862 3566689999999999999999
Q ss_pred CCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCcEee-cCCCCC----CChhhH
Q psy14801 97 GYKMVVVMPMK-MS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNAVVL-DQFRNP----NNPLSH 167 (404)
Q Consensus 97 G~~~~iv~p~~-~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~~~~-~e~~np----~~si~g 167 (404)
|++|+||||.. .+ ..|+.+|+.+||+|+.|+.. ....++.++.+ +.+.++..+.+|+ ..+.|| .....|
T Consensus 130 Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g--~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~ 207 (397)
T PRK04346 130 GLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSG--SRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDF 207 (397)
T ss_pred CCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHh
Confidence 99999999985 33 35778999999999999851 22233333334 3355543455555 334333 222458
Q ss_pred HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc--------CCCCC-----
Q psy14801 168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--------QSLND----- 230 (404)
Q Consensus 168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--------~~~~~----- 230 (404)
+.+++.||.+|+. +.||++|+++|+|++++|+..+|+. .|.+|+|+|+|.++..... ...+.
T Consensus 208 q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~ 286 (397)
T PRK04346 208 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAK 286 (397)
T ss_pred cchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecccc
Confidence 9999999999974 3599999999999999999999965 7889999999998632110 00000
Q ss_pred -------CCCCCCccccccCCCCccc-c--cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801 231 -------VPENQISYNEVEGIGYSFA-A--TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300 (404)
Q Consensus 231 -------~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk 300 (404)
............++...-+ | ..+.....+.++.|+|.|++++++++++.+|++.+++|+++++++.++.+
T Consensus 287 ~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~ 366 (397)
T PRK04346 287 TYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAP 366 (397)
T ss_pred ceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhh
Confidence 0000011112222211111 1 11223345688999999999999999999999999999999999999888
Q ss_pred hcCCCCeEEEEecCCCCCccccc
Q psy14801 301 SLRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 301 ~~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
++.++.+||++.||.+.+++...
T Consensus 367 ~l~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 367 TLGKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred hcCCCCeEEEEeCCCCccCHHHH
Confidence 87788899999999888876543
No 62
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.3e-43 Score=339.47 Aligned_cols=299 Identities=20% Similarity=0.162 Sum_probs=224.5
Q ss_pred CCCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801 19 TVPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 19 ~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~ 96 (404)
..+| +|||+++++|++.+ +++||+|+|++|||||||+|.+..++..+++.|+. ..|+++|+||||+|+|++|+.+
T Consensus 57 ~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~---~vI~etgsGnhG~A~A~aaa~~ 133 (402)
T PRK13028 57 HYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKK---RLIAETGAGQHGVATATAAALF 133 (402)
T ss_pred HhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCC---eEEEecCcHHHHHHHHHHHHHc
Confidence 3455 79999999999988 57999999999999999999999999999988861 3566799999999999999999
Q ss_pred CCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHH-HHHhCCCcEeec-CCC--CC--CChhhH
Q psy14801 97 GYKMVVVMPMKMSK---EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR-IASQMKNAVVLD-QFR--NP--NNPLSH 167 (404)
Q Consensus 97 G~~~~iv~p~~~~~---~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~-e~~--np--~~si~g 167 (404)
|++|+||||...++ .|+.+|+.+||+|+.++.. ....+++++.+.+ +.++.++.+|+. .+. +| .....|
T Consensus 134 Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g--~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~ 211 (402)
T PRK13028 134 GLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRG--GRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDF 211 (402)
T ss_pred CCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCC--CCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHH
Confidence 99999999985433 5678999999999999852 2233444555643 455444566663 322 22 223458
Q ss_pred HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC--------CcccccCCCCC-C---
Q psy14801 168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG--------SILAQPQSLND-V--- 231 (404)
Q Consensus 168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~--------~~~~~~~~~~~-~--- 231 (404)
+.++++|+.+|+. ..||++|+++|+|++++|++.+|+. .|.+|+|+|+|.+ +..+.....+. .
T Consensus 212 q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~ 290 (402)
T PRK13028 212 QSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFK 290 (402)
T ss_pred hHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccc
Confidence 8999999999873 3599999999999999999999986 4889999999988 32221111110 0
Q ss_pred --------CCCCCccccccCCCCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801 232 --------PENQISYNEVEGIGYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300 (404)
Q Consensus 232 --------~~~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk 300 (404)
...........++...-+ |.. +.....+.++.|+|.|++++++.+++.+||+++++||.+++++.+..+
T Consensus 291 ~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~ 370 (402)
T PRK13028 291 SYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAP 370 (402)
T ss_pred eeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhh
Confidence 000011122223321111 111 122344689999999999999999999999999999999999999888
Q ss_pred hcCCCCeEEEEecCCCCCccccc
Q psy14801 301 SLRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 301 ~~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
++.++.+||++.||.+.+++...
T Consensus 371 ~l~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 371 ELSKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred hcCCCCeEEEEECCCCccCHHHH
Confidence 87788999999999988876544
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.5e-43 Score=342.66 Aligned_cols=296 Identities=21% Similarity=0.206 Sum_probs=221.8
Q ss_pred CCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801 22 GKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100 (404)
Q Consensus 22 g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~ 100 (404)
.+|||+++++|++.+| ++||+|+|++|||||||||++..++..++++|. +..|+++|+||||+|+|++|+.+|++|
T Consensus 49 ~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~---~~vi~e~ssGN~G~alA~~a~~~Gl~~ 125 (385)
T TIGR00263 49 RPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK---KRIIAETGAGQHGVATATAAALLGLDC 125 (385)
T ss_pred CCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC---CEEEEEcCcHHHHHHHHHHHHHcCCCE
Confidence 4899999999988777 799999999999999999999999999988775 134557999999999999999999999
Q ss_pred EEEecCC-CCH--HHHHHHHHcCCEEEEeCCCCCCCChhhH-HHHHHHHHHhCCCcEee-cCCCCC----CChhhHHhhH
Q psy14801 101 VVVMPMK-MSK--EKVYTMKALGAKIIRTQNDKSYDHPEGM-IAGAHRIASQMKNAVVL-DQFRNP----NNPLSHYETT 171 (404)
Q Consensus 101 ~iv~p~~-~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~-~~~a~~l~~~~~~~~~~-~e~~np----~~si~g~~~~ 171 (404)
+||||+. .+. .++++|+.+||+|+.++.. .+...+. .+.++++.++.++.+|+ .++.|| .+...|+.++
T Consensus 126 ~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~--~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~ 203 (385)
T TIGR00263 126 EVYMGAEDVERQKPNVFRMELLGAKVIPVTSG--SGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVI 203 (385)
T ss_pred EEEecCCcccccchHHHHHHHcCCEEEEECCC--CCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHH
Confidence 9999985 443 5788999999999999752 2223333 23445555554445555 455543 3345788999
Q ss_pred HHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---CCC-CCCC-----------
Q psy14801 172 AEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---QSL-NDVP----------- 232 (404)
Q Consensus 172 a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---~~~-~~~~----------- 232 (404)
++||++|+. ..||++|+++|+|++++|++.++.. .|.+|+|+|+|.++..... ..+ ...+
T Consensus 204 g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~ 282 (385)
T TIGR00263 204 GEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLL 282 (385)
T ss_pred HHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccc
Confidence 999999973 2489999999999999999998854 6899999999998632110 000 0000
Q ss_pred C-----CCCccccccCCCCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCC
Q psy14801 233 E-----NQISYNEVEGIGYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP 304 (404)
Q Consensus 233 ~-----~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~ 304 (404)
. .....+...++..... +.. +.....+.++.|+|.|+.++++++++++|+++++++|++++++.+++++..+
T Consensus 283 ~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~ 362 (385)
T TIGR00263 283 QDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPK 362 (385)
T ss_pred cCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCC
Confidence 0 0001112222221111 111 1223456789999999999999999999999999999999999998888778
Q ss_pred CCeEEEEecCCCCCccccc
Q psy14801 305 DQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 305 ~~~vv~v~~~~~~~~~~~~ 323 (404)
+.+||++.||++.++++.+
T Consensus 363 ~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 363 DQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred CCeEEEEeCCCCcCCHHHH
Confidence 8899999999888876543
No 64
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3.7e-43 Score=340.48 Aligned_cols=301 Identities=19% Similarity=0.203 Sum_probs=224.6
Q ss_pred cCCCCC-CCCeeecCCCCCCC------CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHH
Q psy14801 17 TPTVPG-KVPLLPQSKQGSIL------LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGL 89 (404)
Q Consensus 17 ~~~~~g-~TPl~~~~~l~~~~------g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~ 89 (404)
++..+| +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+ +..|+++|+||||+|+
T Consensus 59 l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~---~~vIaesgaGNhG~Al 135 (410)
T PLN02618 59 LKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK---KRIIAETGAGQHGVAT 135 (410)
T ss_pred HHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC---CEEEEEcCcHHHHHHH
Confidence 345676 89999999999866 5799999999999999999999999888888875 1344566799999999
Q ss_pred HHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHH-HHHHHHHHhCCCcEee-cCCCC--C-
Q psy14801 90 AMVAAIKGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMI-AGAHRIASQMKNAVVL-DQFRN--P- 161 (404)
Q Consensus 90 A~~a~~~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~-~~a~~l~~~~~~~~~~-~e~~n--p- 161 (404)
|++|+++|++|+||||... +..|+.+|+.+||+|+.++.. ....++++ +.+++++++....+|+ ....| |
T Consensus 136 A~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g--~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~ 213 (410)
T PLN02618 136 ATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSG--TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 213 (410)
T ss_pred HHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCC--CCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC
Confidence 9999999999999999853 356677999999999999641 11223333 3345566654455665 33333 3
Q ss_pred -CChhhHHhhHHHHHHHHh----CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc--------cCCC
Q psy14801 162 -NNPLSHYETTAEEILRDT----GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ--------PQSL 228 (404)
Q Consensus 162 -~~si~g~~~~a~ei~~q~----~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~--------~~~~ 228 (404)
.....++.+++.||.+|+ ...||.+|+++|+|++++||+.+|+. .|.+|+|+|+|.++.... ....
T Consensus 214 ~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~ 292 (410)
T PLN02618 214 PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEV 292 (410)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCc
Confidence 223467889999997776 23599999999999999999999965 688999999999862210 0000
Q ss_pred C-----------C-CCCCCCccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHH
Q psy14801 229 N-----------D-VPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293 (404)
Q Consensus 229 ~-----------~-~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tla 293 (404)
+ . ............++...-. ...+.....+.++.|+|.|+++++++|++.+||+.+++||.+++
T Consensus 293 gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a 372 (410)
T PLN02618 293 GVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALA 372 (410)
T ss_pred ceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHH
Confidence 0 0 0000011112222211110 12223345678999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801 294 VACQAAKSLRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 294 g~~~~lk~~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
++.++++++.++..||++.+|.+.+++...
T Consensus 373 ~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 373 YLEKLCPTLPDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred HHHHHhHhcCCCCEEEEEeCCCCcCCHHHH
Confidence 999999988888999999999999987755
No 65
>KOG1251|consensus
Probab=100.00 E-value=8.8e-44 Score=308.54 Aligned_cols=293 Identities=20% Similarity=0.265 Sum_probs=238.9
Q ss_pred cCCCCCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHH-HhCCCCCCCEEEecCCChHHH
Q psy14801 9 NSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAE-TAGVLKPGYTIVEPSSGNTGI 87 (404)
Q Consensus 9 ~~~~~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~-~~g~~~~~~~vv~~ssGN~g~ 87 (404)
.+.|-+||++ .||++..+.|.+..|.+||||+|.+|.|||||.|||.+.+..+. ++.. +.||+.||||||.
T Consensus 15 A~~rik~~ih----kTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~----kgvithSSGNHaq 86 (323)
T KOG1251|consen 15 AHQRIKPFIH----KTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRA----KGVITHSSGNHAQ 86 (323)
T ss_pred HHHHHHhhhc----cCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhc----CceEeecCCcHHH
Confidence 4456677876 89999999999999999999999999999999999999988876 4433 6799999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhH
Q psy14801 88 GLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH 167 (404)
Q Consensus 88 a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g 167 (404)
|+|++|+..|++++||||.+.|..|...++.||++|+.++. +.+ .+.+.++++.++. +.+.+.+|+.|. .+.|
T Consensus 87 AlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~---~~~--sRE~va~~ltee~-g~~~i~Py~~p~-vIaG 159 (323)
T KOG1251|consen 87 ALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP---TVE--SRESVAKDLTEET-GYYLIHPYNHPS-VIAG 159 (323)
T ss_pred HHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC---ccc--hHHHHHHHHHHhc-CcEEeCCCCCcc-eeec
Confidence 99999999999999999999999999999999999999986 332 3456689999887 567779999996 7899
Q ss_pred HhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC-CCCCCCCCccccccCCCC
Q psy14801 168 YETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL-NDVPENQISYNEVEGIGY 246 (404)
Q Consensus 168 ~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 246 (404)
+.++|+|+++|.+ ..|.+|||+|+||+++|++++.+...|+++|++|+|++.....+... +.........++++|...
T Consensus 160 qgTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~ 238 (323)
T KOG1251|consen 160 QGTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRT 238 (323)
T ss_pred cchHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhh
Confidence 9999999999998 78999999999999999999999999999999999987643211111 110001112233344322
Q ss_pred c---ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801 247 S---FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318 (404)
Q Consensus 247 ~---~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~ 318 (404)
. ...+.+-+.++|..+.|++.|+.++++.+|++..++++|+.+..++|++..-.++ ...++.+|.+||...
T Consensus 239 ~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~-~~K~igIiLsGGNVD 312 (323)
T KOG1251|consen 239 SHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL-NIKRIGIILSGGNVD 312 (323)
T ss_pred ccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh-ccCceEEEEeCCccc
Confidence 2 1222334567899999999999999999999999999999999999987654443 367889999988643
No 66
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.9e-42 Score=338.50 Aligned_cols=291 Identities=20% Similarity=0.206 Sum_probs=216.5
Q ss_pred CCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHH
Q psy14801 19 TVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAI 95 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~ 95 (404)
++.++|||+++++|++.+| ++||+|+|++|||||||+|++..++.++.++|. .++|+ +|+||||.|+|++|+.
T Consensus 64 l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~ 139 (419)
T TIGR01415 64 QIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGAL 139 (419)
T ss_pred hcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHH
Confidence 4446899999999998776 699999999999999999999999999999997 45665 6899999999999999
Q ss_pred cCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhh---------------HHHHHHHHHHhCCC-cEeec
Q psy14801 96 KGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEG---------------MIAGAHRIASQMKN-AVVLD 156 (404)
Q Consensus 96 ~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~---------------~~~~a~~l~~~~~~-~~~~~ 156 (404)
+|++|+||||... ++.|+.+|+.+||+|+.++.+ +++..+ .+..+.+++++.++ .|+..
T Consensus 140 ~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~ 217 (419)
T TIGR01415 140 FGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLG 217 (419)
T ss_pred cCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeC
Confidence 9999999999843 568899999999999999973 333211 23455566655443 45556
Q ss_pred CCCCCCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHh----CCCcEEEEEcCCCCcccccCCCC
Q psy14801 157 QFRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEK----CPSCKLVGADPFGSILAQPQSLN 229 (404)
Q Consensus 157 e~~np~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~----~~~~~vi~V~p~~~~~~~~~~~~ 229 (404)
++.|+ ...|+.++|+||++|++. .||++|+++|+|++++|++.+|... .+.+|+|+|+|.+++.+......
T Consensus 218 ~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~ 295 (419)
T TIGR01415 218 SVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYR 295 (419)
T ss_pred CCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCccc
Confidence 66664 567999999999999974 4999999999999999999988432 24689999999998654332110
Q ss_pred -CCCCC--CCccccccCCCCccccc-----------------ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801 230 -DVPEN--QISYNEVEGIGYSFAAT-----------------TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289 (404)
Q Consensus 230 -~~~~~--~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg 289 (404)
...+. ......+.+++..+.+. .+........+.|+|.|++++++.+++++|++++|+||
T Consensus 296 yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa 375 (419)
T TIGR01415 296 YDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESA 375 (419)
T ss_pred ccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHH
Confidence 00000 00001111222222211 11122334577899999999999999999999999999
Q ss_pred hHHHHHHHHHHhcC---CCCeEEEEecCCCC
Q psy14801 290 TAMHVACQAAKSLR---PDQRCVVILADGVR 317 (404)
Q Consensus 290 ~tlag~~~~lk~~~---~~~~vv~v~~~~~~ 317 (404)
.+++++.+..++.. .+.+|+++++|.+.
T Consensus 376 ~alaaai~~a~~~~~~~~~~vvv~~lsG~G~ 406 (419)
T TIGR01415 376 HAIAAAIDEARKCRETGEEKVILFNLSGHGL 406 (419)
T ss_pred HHHHHHHHHHHhcCcCCCCeEEEEEcCCCCc
Confidence 99999999887643 23356677777544
No 67
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=6.1e-44 Score=340.70 Aligned_cols=283 Identities=32% Similarity=0.436 Sum_probs=216.9
Q ss_pred cCCCCCCCCeeecC--CCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 17 TPTVPGKVPLLPQS--KQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 17 ~~~~~g~TPl~~~~--~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
|++++++|||++++ .++...+.+||+|+|++|||||||||++.+++.+++++|. ++|+++|+||||.|+|++|+
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~----~~vv~assGN~g~a~A~~a~ 76 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG----RTVVGASSGNHGRALAYAAA 76 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT----SEEEEESSSHHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc----ceeeeeccCCceehhhhhhh
Confidence 45789999999975 4455667899999999999999999999999999998876 78999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh-------CCCcEeecCCCCCCChhhH
Q psy14801 95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ-------MKNAVVLDQFRNPNNPLSH 167 (404)
Q Consensus 95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~-------~~~~~~~~e~~np~~si~g 167 (404)
.+|++|++|+|.++++.|+++++.+|++|+.++.+ ++ +..+.+.+++++ .... +++| |+.+.+.|
T Consensus 77 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g 148 (306)
T PF00291_consen 77 RLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VE---GAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAG 148 (306)
T ss_dssp HHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HH---HHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHH
T ss_pred hccccceeeeccccccccccceeeecceEEEcccc--cc---ccccccccccccccccccccccc--cCcc-cchhhhhh
Confidence 99999999999999999999999999999999862 21 122223333321 1112 5667 55457899
Q ss_pred HhhHHHHHHHHhCCCcCE--EEEccCCChhHHHHHHHHHH--hCCCcEEEEEcCCCCcccccC-CCCCCCCCCCcccccc
Q psy14801 168 YETTAEEILRDTGGKVDM--IVLGCGTGGTASGIGRKIKE--KCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVE 242 (404)
Q Consensus 168 ~~~~a~ei~~q~~~~~~~--vvv~~gsG~~~~Gi~la~~~--~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (404)
+.++++||++|+. .||. +|+|+|+|++++|++.+++. . |.+|+++|+|.++..+... ..+... .......+.
T Consensus 149 ~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 225 (306)
T PF00291_consen 149 YATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPI-RLPGESTIA 225 (306)
T ss_dssp HHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCE-HSSCHHSST
T ss_pred hhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccc-cccceeeee
Confidence 9999999999998 7765 99999999999999999999 7 8999999999887543211 001100 000001223
Q ss_pred CCCCcc-cccc----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc----CCCCeEEEEec
Q psy14801 243 GIGYSF-AATT----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL----RPDQRCVVILA 313 (404)
Q Consensus 243 ~i~~~~-~~~~----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~----~~~~~vv~v~~ 313 (404)
+++... .+.. +...+.+.++.++|+|+.++++++++++|++++|+++++++++.++.++. +++.+||+|+|
T Consensus 226 gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 226 GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 443333 1111 12334456789999999999999999999999999999999999988775 47899999998
Q ss_pred C
Q psy14801 314 D 314 (404)
Q Consensus 314 ~ 314 (404)
|
T Consensus 306 G 306 (306)
T PF00291_consen 306 G 306 (306)
T ss_dssp B
T ss_pred C
Confidence 6
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=4.2e-42 Score=336.51 Aligned_cols=291 Identities=17% Similarity=0.164 Sum_probs=218.9
Q ss_pred CCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHc
Q psy14801 20 VPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 20 ~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~ 96 (404)
..++|||+++++|++.+| ++||+|+|++|||||||+|++..++..+.++|. ..+++ .|+||||+|+|++|+.+
T Consensus 74 ~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~ 149 (427)
T PRK12391 74 LWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALF 149 (427)
T ss_pred ccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHc
Confidence 457999999999988776 699999999999999999999999999999997 46665 57999999999999999
Q ss_pred CCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChh---------------hHHHHHHHHHHhCCCcEeecCC
Q psy14801 97 GYKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPE---------------GMIAGAHRIASQMKNAVVLDQF 158 (404)
Q Consensus 97 G~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~---------------~~~~~a~~l~~~~~~~~~~~e~ 158 (404)
|++|+||||.. .++.|+.+|+.+||+|+.++.+ +++.. ..++.+.+++.+.++..|...+
T Consensus 150 Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~--~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s 227 (427)
T PRK12391 150 GLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSD--LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGS 227 (427)
T ss_pred CCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCc--hhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCC
Confidence 99999999974 3668899999999999999863 32211 1345566666554455555333
Q ss_pred CCCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHH-h--C-CCcEEEEEcCCCCcccccCCCC-C
Q psy14801 159 RNPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKE-K--C-PSCKLVGADPFGSILAQPQSLN-D 230 (404)
Q Consensus 159 ~np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~-~--~-~~~~vi~V~p~~~~~~~~~~~~-~ 230 (404)
|+.+.+.|+.++|+||++|++ ..||.+|+++|+|++++|++.++.. + . +.+|||+|+|.+++.+...... .
T Consensus 228 -~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~ 306 (427)
T PRK12391 228 -VLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD 306 (427)
T ss_pred -CCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccccc
Confidence 233467899999999999997 3699999999999999999997743 2 3 7789999999998765432111 0
Q ss_pred CCC--CCCccccccCCCCccccccc-----------------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801 231 VPE--NQISYNEVEGIGYSFAATTL-----------------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA 291 (404)
Q Consensus 231 ~~~--~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t 291 (404)
..+ .......+.+++..+++... ......+.+.|++.|++++++.+++++|++++|+||.+
T Consensus 307 ~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~a 386 (427)
T PRK12391 307 FGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHA 386 (427)
T ss_pred ccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHH
Confidence 000 00000112233333322211 11222367899999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CCCCeEEEEecCCCC
Q psy14801 292 MHVACQAAKSL---RPDQRCVVILADGVR 317 (404)
Q Consensus 292 lag~~~~lk~~---~~~~~vv~v~~~~~~ 317 (404)
++++.+..++. .++.+||++++|.+.
T Consensus 387 laaa~~~a~~~~~~~~~~~iv~~lsG~G~ 415 (427)
T PRK12391 387 IAAAIDEALKAKEEGEEKVILFNLSGHGL 415 (427)
T ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCCC
Confidence 99999887652 346788888887544
No 69
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.6e-43 Score=337.82 Aligned_cols=294 Identities=17% Similarity=0.186 Sum_probs=226.4
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEE--ecCCChHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIV--EPSSGNTGIGLA 90 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv--~~ssGN~g~a~A 90 (404)
|++++.+++|||+++++++...|++||+|+|++||+ ||||+|++.+++..+.++|. ++|| ++|+||||+|+|
T Consensus 13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~vv~~~~ssGN~g~alA 88 (329)
T PRK14045 13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DVVITVGAVHSNHAFVTG 88 (329)
T ss_pred CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CEEEEeCccHHHHHHHHH
Confidence 788899999999999999887888999999999996 89999999999999999987 6777 589999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCChhhHH
Q psy14801 91 MVAAIKGYKMVVVMPMKMSKE-KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNPLSHY 168 (404)
Q Consensus 91 ~~a~~~G~~~~iv~p~~~~~~-k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~ 168 (404)
++|+.+|++|++|||...+.. +..+++.+||+++.++...+++..+.+.+.++++.++.+..++. .++.||.+...++
T Consensus 89 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~ 168 (329)
T PRK14045 89 LAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYV 168 (329)
T ss_pred HHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHH
Confidence 999999999999999865433 66678999999999875333333334455666676655444554 6678898765554
Q ss_pred hhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801 169 ETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG 245 (404)
Q Consensus 169 ~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 245 (404)
..++ ||++|+. .++|.+|+++|||+|++|++.+++...|.+|||+|+|.+........+.. .........+++
T Consensus 169 ~~~~-EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~---~~~~~~~~~g~~ 244 (329)
T PRK14045 169 RAVG-EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKN---LVKKTKELLGVK 244 (329)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH---HHHHHHHHhCCC
Confidence 5555 9999986 36999999999999999999999999999999999997632111110000 000011122332
Q ss_pred Ccc-cccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801 246 YSF-AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318 (404)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~ 318 (404)
... .+..++... +.|..++ +|++++++++++++|+++|| +||.+++++.+++++...+.+||+++|||...
T Consensus 245 ~~~~~~~~~d~~~-~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG~~g 317 (329)
T PRK14045 245 VKVQEPELYDYSF-GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGGISG 317 (329)
T ss_pred CCccceEeccccc-CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCCccc
Confidence 222 232333333 6777776 79999999999999999998 99999999999998865477999999998654
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=6.3e-43 Score=336.74 Aligned_cols=293 Identities=21% Similarity=0.193 Sum_probs=226.6
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTG 86 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g 86 (404)
.|.+++.+|+|||++++++++..| .+||+|+|++||+ ||+|||.+..++.+++++|. .+|+++ |+||||
T Consensus 6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~vvs~G~s~GN~g 81 (337)
T PRK12390 6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----DTLVSIGGVQSNHT 81 (337)
T ss_pred CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----CEEEEeCCCccHHH
Confidence 356788999999999999887777 6999999999997 77899999999999999998 788887 889999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhCCCcEe-ec
Q psy14801 87 IGLAMVAAIKGYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQMKNAVV-LD 156 (404)
Q Consensus 87 ~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~~~~~~-~~ 156 (404)
+|+|++|+++|++|+||+|..++ ..|+.+++.+||+|+.++. +++ ...+.++.+.++.++..+..| ..
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPD--GFDIGIRKSWEDALEDVRAAGGKPYAIP 159 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCC--CcchhHHHHHHHHHHHHHhCCCceEEeC
Confidence 99999999999999999876544 2367799999999999986 232 223444455555555333333 33
Q ss_pred CCCC--CCChhhHHhhHHHHHHHHh---CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801 157 QFRN--PNNPLSHYETTAEEILRDT---GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV 231 (404)
Q Consensus 157 e~~n--p~~si~g~~~~a~ei~~q~---~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~ 231 (404)
++.+ |. ...|+.++|+||++|. ..+||++|+++|+|+|++|++.+++...|.+|||+|+|.++..........
T Consensus 160 ~~~~~~~~-~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~- 237 (337)
T PRK12390 160 AGASDHPL-GGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR- 237 (337)
T ss_pred CcCCCCCc-ccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH-
Confidence 3322 22 2357888999999984 346999999999999999999999999999999999999875432211100
Q ss_pred CCCCCcccccc--CCCCccccc--ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCC
Q psy14801 232 PENQISYNEVE--GIGYSFAAT--TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRP 304 (404)
Q Consensus 232 ~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~ 304 (404)
...+.+. +++....+. .+...+.+..+.++|+|+.++++++++++|++++|+ ||.+++++.++.++ ..+
T Consensus 238 ----~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~ 313 (337)
T PRK12390 238 ----IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPE 313 (337)
T ss_pred ----HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCC
Confidence 0011111 222212122 234556789999999999999999999999999996 99999999998875 567
Q ss_pred CCeEEEEecCCCCC
Q psy14801 305 DQRCVVILADGVRN 318 (404)
Q Consensus 305 ~~~vv~v~~~~~~~ 318 (404)
+.+||+++|||...
T Consensus 314 ~~~vv~~htgg~~~ 327 (337)
T PRK12390 314 GSKVLYAHLGGVPA 327 (337)
T ss_pred CCeEEEEeCCChHh
Confidence 88999999998543
No 71
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3e-43 Score=335.09 Aligned_cols=281 Identities=18% Similarity=0.157 Sum_probs=219.4
Q ss_pred CCeeecCCCCCCC--CCeEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHHHHHHHHHHHc
Q psy14801 24 VPLLPQSKQGSIL--LPTTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTGIGLAMVAAIK 96 (404)
Q Consensus 24 TPl~~~~~l~~~~--g~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g~a~A~~a~~~ 96 (404)
|||+++++|++.+ +.+||+|+|++||+ ||||||++.+++..++++|. ++||++ |+||||+|+|++|+.+
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~----~~vv~~ggs~GN~g~alA~~a~~~ 76 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA----DTLVTVGGIQSNHTRQVAAVAAKL 76 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC----CEEEECCCchhHHHHHHHHHHHHc
Confidence 8999999998876 57999999999999 56699999999999999987 789998 6899999999999999
Q ss_pred CCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCCChhhHH-HHHHHHHHhCCCcEee-cCCC-CCCChh
Q psy14801 97 GYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYDHPEGMI-AGAHRIASQMKNAVVL-DQFR-NPNNPL 165 (404)
Q Consensus 97 G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~-~~a~~l~~~~~~~~~~-~e~~-np~~si 165 (404)
|++|+||||.+.+ ..|+++++.+||+|+.++.+. ........ +.++++.++.+..++. +++. ||.+ +
T Consensus 77 G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 77 GLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGF-DIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred CCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcc-hhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 9999999999876 468999999999999998631 11112222 2333444433333443 5554 8975 5
Q ss_pred hHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccccc
Q psy14801 166 SHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVE 242 (404)
Q Consensus 166 ~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
.|+.++++||++|+.. .||++|+++|+|+|++|++.+++...|..|||+|+|.++........... .. ..+.
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~----~~-~~~~ 229 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRI----AQ-AKLA 229 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHH----HH-HHHH
Confidence 6889999999999874 59999999999999999999999999999999999998754321110000 00 0111
Q ss_pred --CCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHh--cCCCCeEEEEecCC
Q psy14801 243 --GIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKS--LRPDQRCVVILADG 315 (404)
Q Consensus 243 --~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~--~~~~~~vv~v~~~~ 315 (404)
+.+....+..++..+.+..+.++|+|+.++++++++++|++++| +||.+++++.+++++ ..++.+||+++|||
T Consensus 230 ~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 230 EEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred HcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 11111223334556678889999999999999999999999999 699999999998886 35678999999986
No 72
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7.1e-43 Score=333.41 Aligned_cols=289 Identities=16% Similarity=0.131 Sum_probs=219.1
Q ss_pred CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHHHHHHHHHH
Q psy14801 19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTGIGLAMVAA 94 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g~a~A~~a~ 94 (404)
+...+|||+++++|+...|.+||+|+|++||| ||||||++.+++..++++|. ++||++ |+||||+|+|++|+
T Consensus 3 ~~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC----CEEEEcCCchhHHHHHHHHHHH
Confidence 45578999999999888888999999999998 99999999999999999987 789998 56999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCCCCChhhH-HHHHHHHHHhCC-CcEeecCCCCCCChhhHHhhH
Q psy14801 95 IKGYKMVVVMPMKM-SKEKVYTMKALGAKIIRTQNDKSYDHPEGM-IAGAHRIASQMK-NAVVLDQFRNPNNPLSHYETT 171 (404)
Q Consensus 95 ~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~-~~~a~~l~~~~~-~~~~~~e~~np~~si~g~~~~ 171 (404)
.+|++++||||... +..+..+++.+||+|+.++.. ++++..+. .+.++++.++.+ ..++..++.||.+.. |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999965 456677789999999999852 34433222 122233333322 234457888997654 45569
Q ss_pred HHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc-c
Q psy14801 172 AEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS-F 248 (404)
Q Consensus 172 a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 248 (404)
|+||++|+.. .||.+|+++|+|+|++|++.+++...|.++||+|+|..+.......... .......+++.. .
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~ 231 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVN-----LVKEIAEGLEVKAS 231 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHH-----HHHHHHHHhCCCCC
Confidence 9999999964 6999999999999999999999999999999999987652111100000 001112222221 1
Q ss_pred cccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHhcC-CCCeEEEEecCCCCC
Q psy14801 249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLR-PDQRCVVILADGVRN 318 (404)
Q Consensus 249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~~ 318 (404)
..........+..+.++|+|+.++++++++++|+++|| +||.+++++.+++++.. ++.+||+++||+...
T Consensus 232 ~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g 303 (311)
T TIGR01275 232 EVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISG 303 (311)
T ss_pred CCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCccc
Confidence 11111233456678999999999999999999999999 59999999999886542 466899999998543
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=7.6e-43 Score=335.36 Aligned_cols=290 Identities=19% Similarity=0.205 Sum_probs=228.0
Q ss_pred CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEEecC--CChHHHHHH
Q psy14801 15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIVEPS--SGNTGIGLA 90 (404)
Q Consensus 15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~s--sGN~g~a~A 90 (404)
+.+.+.+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++..++++|. ++||++| +||||.|+|
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~~vvt~g~s~gN~g~alA 82 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----DTLITAGAIQSNHARQTA 82 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----CEEEEcCcchhHHHHHHH
Confidence 446788999999999999887888999999999996 69999999999999998887 7888875 489999999
Q ss_pred HHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCCCCCh-hhHHHHHHHHHHhCCCcE-eecCCCC
Q psy14801 91 MVAAIKGYKMVVVMPMKMSK--------EKVYTMKALGAKIIRTQNDKSYDHP-EGMIAGAHRIASQMKNAV-VLDQFRN 160 (404)
Q Consensus 91 ~~a~~~G~~~~iv~p~~~~~--------~k~~~l~~~Ga~v~~v~~~~~~~~~-~~~~~~a~~l~~~~~~~~-~~~e~~n 160 (404)
++|+.+|++|+||||...+. .|+..++.+||+|+.++.+ ++. ......++++.++.+..+ +..++.|
T Consensus 83 ~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~---~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 159 (331)
T PRK03910 83 AAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG---TDMDAQLEELAEELRAQGRRPYVIPVGGSN 159 (331)
T ss_pred HHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc---chHHHHHHHHHHHHHHcCCceEEECCCCCC
Confidence 99999999999999998775 4568999999999999863 222 223345666666543334 3467888
Q ss_pred CCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc
Q psy14801 161 PNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS 237 (404)
Q Consensus 161 p~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~ 237 (404)
|.+ ..|+.++++||++|+.. .||.+|+|+|+|+|++|++.+++...|++++|+|+|.++.......... ..
T Consensus 160 ~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~-----~~ 233 (331)
T PRK03910 160 ALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAK-----LA 233 (331)
T ss_pred chh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH-----HH
Confidence 875 46778999999999973 5999999999999999999999999999999999999875432110000 00
Q ss_pred cccccCCCCc----ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHhc--CCCCeEEE
Q psy14801 238 YNEVEGIGYS----FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKSL--RPDQRCVV 310 (404)
Q Consensus 238 ~~~~~~i~~~----~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~~--~~~~~vv~ 310 (404)
.....+++.. .....+...+.+..+.++|.|++++++++++++|+++||+ ||.+++++.+++++. .++.+||+
T Consensus 234 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~ 313 (331)
T PRK03910 234 QATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLF 313 (331)
T ss_pred HHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 0111111111 1111234456778899999999999999999999999996 999999999987653 45779999
Q ss_pred EecCCCC
Q psy14801 311 ILADGVR 317 (404)
Q Consensus 311 v~~~~~~ 317 (404)
|+||+..
T Consensus 314 i~tGG~~ 320 (331)
T PRK03910 314 IHTGGAP 320 (331)
T ss_pred EECCChH
Confidence 9998854
No 74
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.4e-42 Score=349.49 Aligned_cols=302 Identities=20% Similarity=0.193 Sum_probs=227.2
Q ss_pred cCCCCC-CCCeeecCCCCCC----CC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHH
Q psy14801 17 TPTVPG-KVPLLPQSKQGSI----LL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGL 89 (404)
Q Consensus 17 ~~~~~g-~TPl~~~~~l~~~----~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~ 89 (404)
++..+| +|||+++++|++. +| ++||+|+|++|||||||||++..++..+++.|+. .+|+++|+||||+|+
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~---~~IvetssGNhG~Al 395 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT---RVIAETGAGQHGVAT 395 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC---CEEEEECcHHHHHHH
Confidence 345678 9999999998753 44 7999999999999999999999999999999873 578899999999999
Q ss_pred HHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCc-EeecCCCCC---
Q psy14801 90 AMVAAIKGYKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNA-VVLDQFRNP--- 161 (404)
Q Consensus 90 A~~a~~~G~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~-~~~~e~~np--- 161 (404)
|++|+++|++|+||||.. .+..|+.+|+.|||+|+.++... ...+++++.+ +++.++.++. |++.++.||
T Consensus 396 A~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~--~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~ 473 (695)
T PRK13802 396 ATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGD--RILKDAINEALRDWVTNVKDTHYLLGTVAGPHPF 473 (695)
T ss_pred HHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCC--CcHHHHHHHHHHHHHHhcCCceEeecccCCCCCc
Confidence 999999999999999985 46789999999999999998421 1222333333 5566554434 556788765
Q ss_pred -CChhhHHhhHHHHHHHHhCC-----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-------C
Q psy14801 162 -NNPLSHYETTAEEILRDTGG-----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-------L 228 (404)
Q Consensus 162 -~~si~g~~~~a~ei~~q~~~-----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-------~ 228 (404)
.+...|+.++|+||++|+.+ .||++|+++|+|++++|++.+|+. .|.+|+|+|+|.++....... .
T Consensus 474 p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~ 552 (695)
T PRK13802 474 PAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGT 552 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhcc
Confidence 23457999999999999953 599999999999999999999965 688999999999863221100 0
Q ss_pred CC----------CCCC-----CCccccccCCCCccccccc-CccccC--cEEecChHHHHHHHHHHHHhcCcEeccchhh
Q psy14801 229 ND----------VPEN-----QISYNEVEGIGYSFAATTL-DRNVID--QWGKCGDKDTFLMARRLIKSEGLLVGGSSGT 290 (404)
Q Consensus 229 ~~----------~~~~-----~~~~~~~~~i~~~~~~~~~-~~~~~~--~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~ 290 (404)
+. .+.. ........|+...-+...+ .....+ ++..++|.|++++.+.+++.+||+++++||.
T Consensus 553 g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~h 632 (695)
T PRK13802 553 GELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSH 632 (695)
T ss_pred CCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHH
Confidence 00 0000 0001111121111000000 001123 4589999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC----CCeEEEEecCCCCCcccccc
Q psy14801 291 AMHVACQAAKSLRP----DQRCVVILADGVRNYLTKFI 324 (404)
Q Consensus 291 tlag~~~~lk~~~~----~~~vv~v~~~~~~~~~~~~~ 324 (404)
+++++.+++++..+ +..||++.||.+.+|+++..
T Consensus 633 Ava~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~ 670 (695)
T PRK13802 633 AVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAG 670 (695)
T ss_pred HHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHH
Confidence 99999999987653 55899999999999988753
No 75
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.5e-42 Score=332.53 Aligned_cols=288 Identities=20% Similarity=0.192 Sum_probs=223.6
Q ss_pred CCCeeecCCCCCCCCC-eEEEEeCCCCC-CCChhhHHHHHHHHHHHHh----------------CCCCC---CCEEEecC
Q psy14801 23 KVPLLPQSKQGSILLP-TTDAKCEFMNP-TGSLKDRAAWRMIEDAETA----------------GVLKP---GYTIVEPS 81 (404)
Q Consensus 23 ~TPl~~~~~l~~~~g~-~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~~---~~~vv~~s 81 (404)
+|||+++++|++.+|. +||+|+|++|+ |||||+|++.+.+..+.++ +.+++ ..+||++|
T Consensus 22 ~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aS 101 (376)
T TIGR01747 22 PTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATAT 101 (376)
T ss_pred CCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEEC
Confidence 7999999999999994 99999999985 8999999999988877552 12111 36899999
Q ss_pred CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec-----
Q psy14801 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD----- 156 (404)
Q Consensus 82 sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----- 156 (404)
+||||+|+|++|+.+|++|+||||.++++.|+.+|+.+||+|+.+++ +|++ ..+.+++++++. ++++++
T Consensus 102 sGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~---a~~~a~~~~~~~-g~~~~~~~~~~ 175 (376)
T TIGR01747 102 DGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDD---TVRLAMQMAQQH-GWVVVQDTAWE 175 (376)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHH---HHHHHHHHHHhc-CcEEecccccc
Confidence 99999999999999999999999999999999999999999999986 4543 456677777765 456665
Q ss_pred CCCC--CCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCC-C-cEEEEEcCCCCcccccCCC
Q psy14801 157 QFRN--PNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCP-S-CKLVGADPFGSILAQPQSL 228 (404)
Q Consensus 157 e~~n--p~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~-~-~~vi~V~p~~~~~~~~~~~ 228 (404)
+|.| |. .+.||.++++||++|+.. .||++|+|+|+|++++|++.+++...+ . .++++|+|+++..+.....
T Consensus 176 ~~~~~~~~-ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~ 254 (376)
T TIGR01747 176 GYEKIPTW-IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAV 254 (376)
T ss_pred ccccCCch-HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHH
Confidence 4655 42 478999999999999963 699999999999999999999976643 3 5999999999865432210
Q ss_pred ---CCCCCCC-CccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhc----CcEeccchhhHHHHHHH
Q psy14801 229 ---NDVPENQ-ISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSE----GLLVGGSSGTAMHVACQ 297 (404)
Q Consensus 229 ---~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~----gi~~~~~tg~tlag~~~ 297 (404)
+.....+ ...+.+.++..... ...+.+...+.++.|+|.|+.++++.+++.. +++++|+++.+++++..
T Consensus 255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~ 334 (376)
T TIGR01747 255 KKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAA 334 (376)
T ss_pred hcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHH
Confidence 1111111 11244555543221 2223345678899999999999999999854 59999999999998884
Q ss_pred HHH---------h--cCCCCeEEEEecCCCC
Q psy14801 298 AAK---------S--LRPDQRCVVILADGVR 317 (404)
Q Consensus 298 ~lk---------~--~~~~~~vv~v~~~~~~ 317 (404)
.+. + ..++.+||++.|+|..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~ 365 (376)
T TIGR01747 335 VMYHPQYQSLMEKLQLDKDAVVLVISTEGDT 365 (376)
T ss_pred HHhCchHHHHHHHcCCCCCCEEEEEeCCCCC
Confidence 332 1 4457899999998864
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.6e-42 Score=331.28 Aligned_cols=293 Identities=22% Similarity=0.192 Sum_probs=226.1
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCC--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLP--TTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTG 86 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~--~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g 86 (404)
.|++++.+|+|||++++++++.+|. +||+|+|++||+ ||||||.+..++..++++|. .+|+++ |+||||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~vvs~ggs~gN~g 80 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----TTLVSIGGIQSNQT 80 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----CEEEECCCCcchHH
Confidence 4678899999999999999987764 999999999986 77799999999999999998 788877 779999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhC-CCcEeec
Q psy14801 87 IGLAMVAAIKGYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQM-KNAVVLD 156 (404)
Q Consensus 87 ~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~-~~~~~~~ 156 (404)
+|+|++|+.+|++|+||||+..+ ..|+.+++.+||+|+.++.. ++ +..+.+..+.+..++. +..+++.
T Consensus 81 ~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~--~~~~~~~~~~~a~~~~~~~~~~~~~i~ 158 (337)
T TIGR01274 81 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG--FDIGHRNSWERALEEVRGAGGKPYPIP 158 (337)
T ss_pred HHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc--ccccchHHHHHHHHHHHhcCCceEEeC
Confidence 99999999999999999998542 58999999999999999863 32 1222333344444433 3335554
Q ss_pred CCC--CCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801 157 QFR--NPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV 231 (404)
Q Consensus 157 e~~--np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~ 231 (404)
++. ||. ...|+.++++||++|+. ..||.+|+|+|+|+|++|++++++...|..|||+|+|.++..........
T Consensus 159 ~~~~~~~~-~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~- 236 (337)
T TIGR01274 159 AGCSDHPL-GGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILR- 236 (337)
T ss_pred CCCCCCcc-chhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH-
Confidence 442 343 24578889999999963 36999999999999999999999999999999999999985432111000
Q ss_pred CCCCCccccccCCC--Ccccc--cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCC
Q psy14801 232 PENQISYNEVEGIG--YSFAA--TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRP 304 (404)
Q Consensus 232 ~~~~~~~~~~~~i~--~~~~~--~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~ 304 (404)
...+.+++++ ....+ ..+...+.+..+.++|+|+.++++.+++++|++++|. ||++++|+.+++++ ..+
T Consensus 237 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~ 312 (337)
T TIGR01274 237 ----IARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKE 312 (337)
T ss_pred ----HHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCC
Confidence 0011111111 11111 1234445678899999999999999999999999996 99999999999886 567
Q ss_pred CCeEEEEecCCCCC
Q psy14801 305 DQRCVVILADGVRN 318 (404)
Q Consensus 305 ~~~vv~v~~~~~~~ 318 (404)
+.+||++++||...
T Consensus 313 ~~~vv~~htGG~~~ 326 (337)
T TIGR01274 313 GSNVLYAHLGGAPA 326 (337)
T ss_pred CCEEEEEeCCChhh
Confidence 88999999997544
No 77
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=5.1e-42 Score=334.34 Aligned_cols=290 Identities=19% Similarity=0.154 Sum_probs=219.9
Q ss_pred CCCCeeecCCCCCCCC-CeEEEEeCCCCC-CCChhhHHHHHHHHHHHH--hCCC-----------------CCCCEEEec
Q psy14801 22 GKVPLLPQSKQGSILL-PTTDAKCEFMNP-TGSLKDRAAWRMIEDAET--AGVL-----------------KPGYTIVEP 80 (404)
Q Consensus 22 g~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~--~g~~-----------------~~~~~vv~~ 80 (404)
-+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+ .|.. ....+||++
T Consensus 40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a 119 (396)
T TIGR03528 40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA 119 (396)
T ss_pred cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence 5799999999999899 599999999985 999999999999887532 2210 012389999
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec----
Q psy14801 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD---- 156 (404)
Q Consensus 81 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~---- 156 (404)
|+||||+|+|++|+.+|++|+||||.++++.|+++|+.+||+|+.++. +++ ++.+.+++++++. ++++++
T Consensus 120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~---~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYD---DAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999985 343 4466788888765 556664
Q ss_pred -CCCCC-CChhhHHhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhC-CCc-EEEEEcCCCCcccccCCC
Q psy14801 157 -QFRNP-NNPLSHYETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKC-PSC-KLVGADPFGSILAQPQSL 228 (404)
Q Consensus 157 -e~~np-~~si~g~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~-~vi~V~p~~~~~~~~~~~ 228 (404)
+|.|. ...+.||.++++||++|+. ..||++|+|+|+|++++|++.+++... +.. ||++|+|+++..+.....
T Consensus 194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~ 273 (396)
T TIGR03528 194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAI 273 (396)
T ss_pred cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHH
Confidence 56552 2246899999999999997 269999999999999999999885543 333 899999998865432110
Q ss_pred ---CCCCCCC-CccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHH----hcCcEeccchhhHHHHHHH
Q psy14801 229 ---NDVPENQ-ISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIK----SEGLLVGGSSGTAMHVACQ 297 (404)
Q Consensus 229 ---~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~----~~gi~~~~~tg~tlag~~~ 297 (404)
+...... ...+..+++.... .+..+.+...|.++.|+|+|+.++++.+++ +++++++|+++.+++++..
T Consensus 274 ~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa 353 (396)
T TIGR03528 274 ADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAA 353 (396)
T ss_pred hcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHH
Confidence 1100011 1123444443211 122223456799999999999999999988 5689999999999977654
Q ss_pred HHHh-----------cCCCCeEEEEecCCCC
Q psy14801 298 AAKS-----------LRPDQRCVVILADGVR 317 (404)
Q Consensus 298 ~lk~-----------~~~~~~vv~v~~~~~~ 317 (404)
.+.. ..++.+|++|.|++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~ 384 (396)
T TIGR03528 354 VMTNPDYKELREKLQLDKNSRVLLISTEGDT 384 (396)
T ss_pred HHhCchhHHHHHhcCCCCCCEEEEEECCCCC
Confidence 4421 2357899999999854
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.7e-40 Score=339.90 Aligned_cols=299 Identities=20% Similarity=0.176 Sum_probs=222.3
Q ss_pred CCCC-CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 19 TVPG-KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 19 ~~~g-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
...| +|||+++++|++.+|++||+|+|++|||||||+|++...+..+++.|+ +..|+++|+||||+|+|++|+++|
T Consensus 266 ~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~---~~vi~e~gsGnhG~A~A~~aa~~G 342 (610)
T PRK13803 266 NYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK---TRIIAETGAGQHGVATATACALFG 342 (610)
T ss_pred HhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC---CEEEEecChHHHHHHHHHHHHHcC
Confidence 3455 799999999998888999999999999999999999999998988875 134557999999999999999999
Q ss_pred CeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHH-HHHHHHhCCCcEeecCC-C--CC--CChhhHH
Q psy14801 98 YKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG-AHRIASQMKNAVVLDQF-R--NP--NNPLSHY 168 (404)
Q Consensus 98 ~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~-a~~l~~~~~~~~~~~e~-~--np--~~si~g~ 168 (404)
++|+||||... +..|+.+|+.+||+|+.++.. .+...+.++. ++++..+.++.+|+.++ . +| .+...|+
T Consensus 343 l~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~--~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 343 LKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSG--SKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred CcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 99999999864 356888999999999999852 2233333333 34443444456676433 2 33 2223478
Q ss_pred hhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc--------ccCCCCC-C----
Q psy14801 169 ETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA--------QPQSLND-V---- 231 (404)
Q Consensus 169 ~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~--------~~~~~~~-~---- 231 (404)
.++++||.+|+.. .||.+|+++|+|++++|++.+|+. .|.+|+|+|+|.++... .....+. .
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~ 499 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMT 499 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecccee
Confidence 9999999999852 599999999999999999999964 78899999999886321 1100000 0
Q ss_pred -------CCCCCccccccCCCCccc-cc--ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh
Q psy14801 232 -------PENQISYNEVEGIGYSFA-AT--TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS 301 (404)
Q Consensus 232 -------~~~~~~~~~~~~i~~~~~-~~--~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~ 301 (404)
.......+...++...-+ +. .+.....+.++.|+|.|++++++.+++.+|++++++||.+++++.++.++
T Consensus 500 ~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~ 579 (610)
T PRK13803 500 YLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKK 579 (610)
T ss_pred eeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchh
Confidence 000011122222221111 11 11122334789999999999999999999999999999999999998777
Q ss_pred cCCCCeEEEEecCCCCCccccc
Q psy14801 302 LRPDQRCVVILADGVRNYLTKF 323 (404)
Q Consensus 302 ~~~~~~vv~v~~~~~~~~~~~~ 323 (404)
+.++.+||++.||.+.+++...
T Consensus 580 ~~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 580 FKKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred cCCCCeEEEEeCCCCcCCHHHH
Confidence 7778899999999988876644
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-39 Score=309.27 Aligned_cols=293 Identities=25% Similarity=0.246 Sum_probs=229.8
Q ss_pred CCCCCCCCeeecCCCCCCCCC---eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801 18 PTVPGKVPLLPQSKQGSILLP---TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA 94 (404)
Q Consensus 18 ~~~~g~TPl~~~~~l~~~~g~---~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~ 94 (404)
.+.+|.||+++.+++...++. ++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|++++
T Consensus 71 ~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----~~I~~ASSGnTgAs~aaya~ 146 (411)
T COG0498 71 SLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----KTILCASSGNTGASAAAYAA 146 (411)
T ss_pred hhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC----CEEEEeCCchHHHHHHHHhc
Confidence 467899999999988887774 59999999999999999999999999999985 68999999999999999999
Q ss_pred HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801 95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173 (404)
Q Consensus 95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ 173 (404)
+.|++|.|++|.+ ++..|+.+|..+|++++.+.+ +||++++ .+++++++.+ .++.....||. .+.|+.++++
T Consensus 147 rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~---~vk~~~~~~~-~~~~~nsiNp~-rlegq~t~~f 219 (411)
T COG0498 147 RAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQE---LVKEAANREG-LLSAVNSINPY-RLEGQKTYAF 219 (411)
T ss_pred cCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHH---HHHHHHhhCC-ceeeccccCHH-HhhhhhhhHh
Confidence 9999999999997 999999999999999999987 6876644 4677776553 37777778886 6789999999
Q ss_pred HHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCc------EEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC
Q psy14801 174 EILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSC------KLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY 246 (404)
Q Consensus 174 ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~------~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 246 (404)
|+.+|+.+ .||.++||+|+||+++|++.+++...|-- ++.+|++++............ ....+......++.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~-~~~~T~a~am~I~~ 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR-ETPETIAPAMDIGN 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc-ccccccccccccCC
Confidence 99999994 69999999999999999999999865532 445555555432211111100 01111111112222
Q ss_pred ccccccc---CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCCCCcccc
Q psy14801 247 SFAATTL---DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 247 ~~~~~~~---~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~~~~~~~ 322 (404)
+.....+ .+...+-...|+|+|+.++.+++++.+|++++|+|+.+++++.++.++ .+++.++|++.|+++.|+.+.
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 2111111 011124578899999999999999999999999999999999988765 457789999999999988665
No 80
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=287.12 Aligned_cols=227 Identities=19% Similarity=0.219 Sum_probs=170.7
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
..+|+ .|++||++|+| ||+|+.|+++++. +|+.+|||++||| |||++|+.++.+|||+++|+|+.++....
T Consensus 26 ~~i~~KlE~~NP~gSvK--DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGN--TGI~LA~vaa~~Gy~~iivmP~~~S~er~ 101 (300)
T COG0031 26 VEIYAKLESFNPGGSVK--DRIALYMIEDAEKRGLLKPGGTIVEATSGN--TGIALAMVAAAKGYRLIIVMPETMSQERR 101 (300)
T ss_pred ceEEEEhhhcCCCCchh--HHHHHHHHHHHHHcCCCCCCCEEEEcCCCh--HHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence 45777 89999999999 9999999999984 3899999999999 99999999999999999999998865433
Q ss_pred CCCCCCCCCCCccccccC-C----C--CcccccccC-ccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801 226 QSLNDVPENQISYNEVEG-I----G--YSFAATTLD-RNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT 290 (404)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-i----~--~~~~~~~~~-~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~ 290 (404)
..+....+........++ + . ..+.....+ ..+.+||.|..|++++ .++++||++.+ ||+|+||||
T Consensus 102 ~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGG 181 (300)
T COG0031 102 KLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGG 181 (300)
T ss_pred HHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcch
Confidence 222222211111000111 0 0 001111112 3355688888888885 46788887765 999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCC-------CccccccchhH--------HhhcCccCcHHHHHH------------
Q psy14801 291 AMHVACQAAKSLRPDQRCVVILADGVR-------NYLTKFISDEW--------MIEKGFLDEAEELEE------------ 343 (404)
Q Consensus 291 tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------ 343 (404)
|++|+.+++|+.+|+.++++|+|.++. ++..++++.++ +.|+.+.++|++++.
T Consensus 182 TitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGil 261 (300)
T COG0031 182 TITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLL 261 (300)
T ss_pred hHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCee
Confidence 999999999999999999999997632 22334444332 345556677777665
Q ss_pred -hccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 344 -MIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 344 -g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
|+|||+|++||+++|++++++++||||+||+|+||||+
T Consensus 262 vG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls~ 300 (300)
T COG0031 262 VGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLSK 300 (300)
T ss_pred ecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccCC
Confidence 56999999999999999999999999999999999983
No 81
>KOG1252|consensus
Probab=100.00 E-value=2e-34 Score=262.56 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=164.0
Q ss_pred Eee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801 153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ 226 (404)
Q Consensus 153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~ 226 (404)
+++ +||.||.+|+| ||+|+.|+++++.+ |+ .++++.+||| +||++|+.++.+|||+|+|+|+.+......
T Consensus 69 i~~K~E~~~p~~SvK--dRia~sMi~~Ae~~G~i~pg~stliEpTSGN--tGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~ 144 (362)
T KOG1252|consen 69 IAAKLEYMNPGGSVK--DRIAWSMIEDAEKKGLITPGKSTLIEPTSGN--TGIGLAYMAALRGYKCIITMPEKMSKEKRI 144 (362)
T ss_pred EEEEeeecCCcccHH--HHHHHHHHHHHHHcCCccCCceEEEecCCCc--hHHHHHHHHHHcCceEEEEechhhhHHHHH
Confidence 444 89999999999 99999999999853 77 8999999999 999999999999999999999998543221
Q ss_pred CCCCCCCCCCccccccCC---------CCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801 227 SLNDVPENQISYNEVEGI---------GYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT 290 (404)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~ 290 (404)
.+..............++ +..+.....+....+||.|..|++++ .+++|||+|.. ||.+.||||
T Consensus 145 ~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGG 224 (362)
T KOG1252|consen 145 LLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGG 224 (362)
T ss_pred HHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCc
Confidence 111111111111111111 00111111233344555555555552 34555555543 888999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCC--------CC-----------ccccccchhHHhhcCccCcHHHHHH--------
Q psy14801 291 AMHVACQAAKSLRPDQRCVVILADGV--------RN-----------YLTKFISDEWMIEKGFLDEAEELEE-------- 343 (404)
Q Consensus 291 tlag~~~~lk~~~~~~~vv~v~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-------- 343 (404)
|+.|+.|++|+++|+.+||.|+|-.+ .+ |.+..+++..+ |+.+.+.+++++.
T Consensus 225 TitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~v-d~~~~~~~d~A~~~Ar~La~e 303 (362)
T KOG1252|consen 225 TITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLV-DEVLKVSSDEAIEMARRLALE 303 (362)
T ss_pred eeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHH-HHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999542 22 34444443333 2333344444433
Q ss_pred -----hccchhHHHHHHHHHHhcCC-CCeEEEEEcCCCcchhhccCCHHHHHHcCC
Q psy14801 344 -----MIHSGTAMHVACQAAKSLRP-DQRCVVILADGVRNYLTKFISDEWMIEKGF 393 (404)
Q Consensus 344 -----g~SsGa~~~~a~~~~~~~~~-~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~ 393 (404)
|+|||+|++||+++|++.+. ++.||+++||+|+||++|+++|+|++++..
T Consensus 304 eGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~ 359 (362)
T KOG1252|consen 304 EGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEK 359 (362)
T ss_pred hCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhh
Confidence 67999999999999998654 566666669999999999999999988764
No 82
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=3.2e-30 Score=254.24 Aligned_cols=282 Identities=17% Similarity=0.127 Sum_probs=202.6
Q ss_pred CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHH---HHHHHHHhCCCCCCCEEEecCCChHHHHH-HHHHHHcCC
Q psy14801 23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWR---MIEDAETAGVLKPGYTIVEPSSGNTGIGL-AMVAAIKGY 98 (404)
Q Consensus 23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~~~~vv~~ssGN~g~a~-A~~a~~~G~ 98 (404)
.+||.++.. ++|+...+++||||||||++.. ++..+.+ +. ..+|+++||||+|.|+ +.++.+.|+
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~---~~~Il~ATSGdtG~Aa~aaf~~~~gi 156 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE---KITILGATSGDTGSAAAEAFRGKPNV 156 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC---CcEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 588888753 5899999999999999999988 7888877 42 1789999999999888 799999999
Q ss_pred eEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCCCCChhhHHHHHHHHHHhC----CCcEeecCCCCCCChhhHHhhHH
Q psy14801 99 KMVVVMPMK-MSKEKVYTMKAL-GAKIIRTQNDKSYDHPEGMIAGAHRIASQM----KNAVVLDQFRNPNNPLSHYETTA 172 (404)
Q Consensus 99 ~~~iv~p~~-~~~~k~~~l~~~-Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~----~~~~~~~e~~np~~si~g~~~~a 172 (404)
+|+|++|.+ +|..++.+|..+ |++|+.+..+++||+++..++. +..+. ...++.....||. -+.++.+.+
T Consensus 157 ~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~---~~~d~~~~~~~~l~saNSiN~~-Ri~gQ~~yy 232 (462)
T PRK09225 157 RVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKA---AFNDEELKEKLKLSSANSINIG-RLLAQIVYY 232 (462)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHH---HhhchhhhhcCceEEEeccCHH-HHHHHHHHH
Confidence 999999995 999999999999 9987444444578887665443 33221 1224444445775 678899999
Q ss_pred HHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccC--CCCc
Q psy14801 173 EEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEG--IGYS 247 (404)
Q Consensus 173 ~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ 247 (404)
+|+.+|+.+ .|+.++||+|+||+++|+.+|.+.-.|--|+|+++..+.+.......+.........+..+. ++.+
T Consensus 233 fea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~p 312 (462)
T PRK09225 233 FYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISVS 312 (462)
T ss_pred HHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCCC
Confidence 999999975 38999999999999999999966655644899988555432111111111000011111111 2111
Q ss_pred ccccc------------c----Cc--cccC---------------cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHH
Q psy14801 248 FAATT------------L----DR--NVID---------------QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHV 294 (404)
Q Consensus 248 ~~~~~------------~----~~--~~~~---------------~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag 294 (404)
....+ . .. ..-. ..+.++|.|+.++++++++++|++++|+|+.++++
T Consensus 313 sn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa 392 (462)
T PRK09225 313 SNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKA 392 (462)
T ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHH
Confidence 11111 0 00 0000 34679999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801 295 ACQAAKSLRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 295 ~~~~lk~~~~~~~vv~v~~~~~~~~~~~ 322 (404)
+.++ ..++.++|++.|+++.|+...
T Consensus 393 ~~~~---~~~~~~~V~l~Ta~p~Kf~~~ 417 (462)
T PRK09225 393 AREY---LDPGEPGVVLSTAHPAKFPEV 417 (462)
T ss_pred HHHh---hCCCCCEEEEecCCccCCHHH
Confidence 9776 346678999999999887443
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.97 E-value=3.7e-30 Score=253.96 Aligned_cols=281 Identities=17% Similarity=0.106 Sum_probs=203.6
Q ss_pred CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHH---HHHHHHh--CCCCCCCEEEecCCChHHHH-HHHHHHHc
Q psy14801 23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRM---IEDAETA--GVLKPGYTIVEPSSGNTGIG-LAMVAAIK 96 (404)
Q Consensus 23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~--g~~~~~~~vv~~ssGN~g~a-~A~~a~~~ 96 (404)
.+||.++.. ++|++.++++||||||||++..+ +..+.++ +. .+|+++||||+|.| ++.++++.
T Consensus 87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~----~~Il~ATSGdTG~Aa~aaf~~~~ 155 (460)
T cd01560 87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNER----ITILVATSGDTGSAAIEGFRGKP 155 (460)
T ss_pred ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCC----eEEEEcCCCcHHHHHHHHHhCcC
Confidence 588888763 68999999999999999999865 7777665 44 78999999999988 58999999
Q ss_pred CCeEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCCCCChhhHHHHHHHHHHhC----CCcEeecCCCCCCChhhHH
Q psy14801 97 GYKMVVVMPMK-MSKEKVYTMKALGA---KIIRTQNDKSYDHPEGMIAGAHRIASQM----KNAVVLDQFRNPNNPLSHY 168 (404)
Q Consensus 97 G~~~~iv~p~~-~~~~k~~~l~~~Ga---~v~~v~~~~~~~~~~~~~~~a~~l~~~~----~~~~~~~e~~np~~si~g~ 168 (404)
|++|+|++|.+ +++.++.+|..+|+ +++.|++ +||+++..+ +++.++. ...++.....||. -+.++
T Consensus 156 gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~v---k~~~~d~~~~~~~~l~saNSiN~~-Ri~~Q 229 (460)
T cd01560 156 NVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLV---KALFADEDFNKKLKLSSANSINWA-RILAQ 229 (460)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHH---HHHhcChhhHhcceEEEEeccCHH-HHHHH
Confidence 99999999995 99999999999996 7777776 688776554 4433221 1224444445775 57789
Q ss_pred hhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCC-CCccccccC
Q psy14801 169 ETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPEN-QISYNEVEG 243 (404)
Q Consensus 169 ~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 243 (404)
.+.++|+.+|+.+ .|+.++||+|+||++.|+.+|.+.-.|--|+|++...+.........+..... ....+..+.
T Consensus 230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spa 309 (460)
T cd01560 230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPA 309 (460)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCch
Confidence 9999999999974 48999999999999999999987766656899987766532211111111000 011111111
Q ss_pred --CCCcccccccCcc--ccC-------------------------------cEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801 244 --IGYSFAATTLDRN--VID-------------------------------QWGKCGDKDTFLMARRLIKSEGLLVGGSS 288 (404)
Q Consensus 244 --i~~~~~~~~~~~~--~~~-------------------------------~~~~v~d~e~~~~~~~l~~~~gi~~~~~t 288 (404)
++.+....++... ..+ ..+.++|+|+.++++++++++|++++|+|
T Consensus 310 mdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPht 389 (460)
T cd01560 310 MDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHT 389 (460)
T ss_pred hhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchH
Confidence 2111110000000 000 34679999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~ 322 (404)
+.+++++.++.++ ++.++|++.|+++.|+...
T Consensus 390 Ava~aa~~~~~~~--~~~~~V~l~Ta~p~Kf~~~ 421 (460)
T cd01560 390 AVGVRAAERVRKS--PGTPGVVLSTAHPAKFPEA 421 (460)
T ss_pred HHHHHHHHHHHhc--cCCCEEEEecCCcccCHHH
Confidence 9999999887655 5568899999999887443
No 84
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=5.7e-30 Score=230.82 Aligned_cols=294 Identities=21% Similarity=0.191 Sum_probs=214.1
Q ss_pred CCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801 21 PGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100 (404)
Q Consensus 21 ~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~ 100 (404)
-.+|||+..++|++.+|++||+|+|++|+||+||...+...+..|++.|+. +.|.+.+.|.||.|.|.+|+++|++|
T Consensus 54 GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~---riIAETGAGQHGVAtAta~A~fgl~C 130 (396)
T COG0133 54 GRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKT---RIIAETGAGQHGVATATAAALFGLEC 130 (396)
T ss_pred CCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCc---eEEeecCCCcccHHHHHHHHHhCCce
Confidence 346999999999999999999999999999999999999999999999983 45677889999999999999999999
Q ss_pred EEEecC---CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCcEeecCC-----CCCCChhhHHhhH
Q psy14801 101 VVVMPM---KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNAVVLDQF-----RNPNNPLSHYETT 171 (404)
Q Consensus 101 ~iv~p~---~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~~~~~e~-----~np~~si~g~~~~ 171 (404)
+|||.. .....+.-+|+.+||+|+.|.. .....+++++.| +.+......++|+... --|.-....+.-+
T Consensus 131 ~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~s--Gs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vI 208 (396)
T COG0133 131 VIYMGAEDVERQALNVFRMRLLGAEVVPVTS--GSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVI 208 (396)
T ss_pred EEEecchhhhhcccchhhhhhcCceEEEecc--CCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHH
Confidence 999986 3345667789999999999986 233455555555 4455555667776311 1132122345566
Q ss_pred HHHHHHH----hCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc--------CCCCC---------
Q psy14801 172 AEEILRD----TGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--------QSLND--------- 230 (404)
Q Consensus 172 a~ei~~q----~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--------~~~~~--------- 230 (404)
+.|.=+| ..+-||.+|.++|+|++..|+...|..- +++++|+|++.+--+... ...+.
T Consensus 209 G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyll 287 (396)
T COG0133 209 GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLL 287 (396)
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEEEeccCcCccCCCccceeecCCCceeeecccceee
Confidence 6665444 4445999999999999999998888753 679999999987522111 00000
Q ss_pred ---CCC-----CCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc
Q psy14801 231 ---VPE-----NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL 302 (404)
Q Consensus 231 ---~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~ 302 (404)
... .+......++++... ..+...-.-+|+.++|.|++++.+.+.+.+||+...-|+.+++.+.++.++.
T Consensus 288 Qd~~GQi~e~hSISAGLDYPgVGPeh--a~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~ 365 (396)
T COG0133 288 QDEDGQILESHSISAGLDYPGVGPEH--AYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKL 365 (396)
T ss_pred EcCCCCEeeeeeeccCCCCCCCChhH--HHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhc
Confidence 000 001111112222211 1112223357899999999999999999999999999999999999999988
Q ss_pred CCCCeEEEEecCCCCCcccc
Q psy14801 303 RPDQRCVVILADGVRNYLTK 322 (404)
Q Consensus 303 ~~~~~vv~v~~~~~~~~~~~ 322 (404)
.++..||+-.++.+.+-+.+
T Consensus 366 ~~~~~ivvnlSGRGDKDv~t 385 (396)
T COG0133 366 PKDEIIVVNLSGRGDKDVFT 385 (396)
T ss_pred CCCcEEEEEccCCCcccHHH
Confidence 77777777777777665443
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=220.68 Aligned_cols=294 Identities=19% Similarity=0.168 Sum_probs=219.9
Q ss_pred CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCC--hHHHHH
Q psy14801 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNP--TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG--NTGIGL 89 (404)
Q Consensus 14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssG--N~g~a~ 89 (404)
.|++++..++||+..++++++.+|++||+|+|++.+ .|.+|.|.+.+++.+|..+|. +++|++++- ||.+++
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----dTlvT~GgiQSNh~r~t 81 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----DTLVTYGGIQSNHVRQT 81 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----cEEEEecccchhHHHHH
Confidence 477788899999999999999999999999999966 589999999999999999998 899999877 999999
Q ss_pred HHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCCh
Q psy14801 90 AMVAAIKGYKMVVVMPMKM----SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNP 164 (404)
Q Consensus 90 A~~a~~~G~~~~iv~p~~~----~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~s 164 (404)
|++|+++|++|+.++-... -..+....+.+|++++.++...+..........++++.++.+..+.+ .+..||.+
T Consensus 82 AavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g- 160 (323)
T COG2515 82 AAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG- 160 (323)
T ss_pred HHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-
Confidence 9999999999999996543 23467777889999999997433311222223344444443223333 34457753
Q ss_pred hhHHhhHHHHHHHHhC--CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccccc
Q psy14801 165 LSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVE 242 (404)
Q Consensus 165 i~g~~~~a~ei~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
.-||-+.+.||.+|++ .++|.+||.+|||+|.+|+..++....++.+||++............+-.... ..++
T Consensus 161 ~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~-----~~a~ 235 (323)
T COG2515 161 ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQ-----ATAE 235 (323)
T ss_pred cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHH-----HHHH
Confidence 3588999999999998 47999999999999999999999999999999999887764322111110000 0000
Q ss_pred CCCCc-ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCCCeEEEEecCCCC
Q psy14801 243 GIGYS-FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPDQRCVVILADGVR 317 (404)
Q Consensus 243 ~i~~~-~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~ 317 (404)
-++.. .........+...-|...++|-.++.+.+++++|+..+|- ||.+++|++..+++ ++.+..|+.+++||..
T Consensus 236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~ 314 (323)
T COG2515 236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAP 314 (323)
T ss_pred HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCcc
Confidence 01111 0011112223333367788899999999999999999995 99999999999885 4566779999999864
No 86
>PLN02356 phosphateglycerate kinase
Probab=99.96 E-value=4.9e-29 Score=241.94 Aligned_cols=240 Identities=18% Similarity=0.218 Sum_probs=173.0
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
..+|+ +|+.||++|+| +|.|..|+.++.. +|+.+|++++||| +|+++|+.++..|+++++|+|++.+....
T Consensus 68 ~~v~~KlE~~nPtGS~K--dR~A~~~i~~a~~~g~~~~~g~VveaSSGN--~g~alA~~aa~~G~~~~ivvP~~~s~~K~ 143 (423)
T PLN02356 68 CEILGKCEFLNPGGSVK--DRVAVKIIEEALESGQLFPGGVVTEGSAGS--TAISLATVAPAYGCKCHVVIPDDVAIEKS 143 (423)
T ss_pred CEEEEEeccCCCCCCHH--HHHHHHHHHHHHhCCccCCCCEEEEeCCHH--HHHHHHHHHHHcCCcEEEEECCCCcHHHH
Confidence 44666 99999999999 9999999988764 2788999999999 89999999999999999999998753221
Q ss_pred CCCCCCCCCCC---------cccc----------ccCC-----------CCccccc-----------------ccCcccc
Q psy14801 226 QSLNDVPENQI---------SYNE----------VEGI-----------GYSFAAT-----------------TLDRNVI 258 (404)
Q Consensus 226 ~~~~~~~~~~~---------~~~~----------~~~i-----------~~~~~~~-----------------~~~~~~~ 258 (404)
..+........ .... ...+ +..+.+. ..+..++
T Consensus 144 ~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
T PLN02356 144 QILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFA 223 (423)
T ss_pred HHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEec
Confidence 11111111000 0000 0000 0000000 0123456
Q ss_pred CcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC--------------
Q psy14801 259 DQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------------- 317 (404)
Q Consensus 259 ~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------------- 317 (404)
+|+.+..+.+++ .++.||+++.+ ||++.|||++++|+.+++|+++|+.+|++|+|.+..
T Consensus 224 ~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s 303 (423)
T PLN02356 224 DQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTRE 303 (423)
T ss_pred CccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhh
Confidence 787777776663 46888888763 899999999999999999999999999999996532
Q ss_pred -----------Cccccccchh--------HHhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCC
Q psy14801 318 -----------NYLTKFISDE--------WMIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQ 365 (404)
Q Consensus 318 -----------~~~~~~~~~~--------~~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~ 365 (404)
+++.+++... -..|..+.++|+++..+ .|||+++++++++++++++++
T Consensus 304 ~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~~g~ 383 (423)
T PLN02356 304 EAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPGH 383 (423)
T ss_pred hhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhCCCC
Confidence 0111222111 12344456777776663 499999999999998877899
Q ss_pred eEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801 366 RCVVILADGVRNYLTKFISDEWMIEKGFL 394 (404)
Q Consensus 366 ~iv~i~~D~g~rYl~~~~~~~w~~~~~~~ 394 (404)
+||+|+||+|+||++|+|||+|+.++|+.
T Consensus 384 ~VV~Il~d~G~kyl~~~~~~~w~~~~~~~ 412 (423)
T PLN02356 384 TIVTILCDSGMRHLSKFHDPQYLSQHGLT 412 (423)
T ss_pred eEEEEECCCCcchhhhhcCHHHHHhcCCC
Confidence 99999999999999999999999999973
No 87
>KOG1395|consensus
Probab=99.94 E-value=3.1e-26 Score=208.69 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=201.5
Q ss_pred CCCCCCeeecCCCCCCC--CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801 20 VPGKVPLLPQSKQGSIL--LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG 97 (404)
Q Consensus 20 ~~g~TPl~~~~~l~~~~--g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G 97 (404)
+-.+|||++.++|.+.+ |.+||+|+|++|||||+|...+...+..+++.|+. ..|.+.+.|.||.|+|.+|+++|
T Consensus 119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkk---nviaETGAGQhGvatA~a~a~FG 195 (477)
T KOG1395|consen 119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKK---NVIAETGAGQHGVATATACAKFG 195 (477)
T ss_pred cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhccc---ceeeccCCCccchHHHHHHHHhC
Confidence 44579999999998844 57999999999999999999999988888888873 45667779999999999999999
Q ss_pred CeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHH-HHHhCCCcEeecCC---CCCCChhh--HH
Q psy14801 98 YKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR-IASQMKNAVVLDQF---RNPNNPLS--HY 168 (404)
Q Consensus 98 ~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~e~---~np~~si~--g~ 168 (404)
++|+|+|-.+ ....+.-+|+.+||+|+.++.. .- -..+....+-+ ........+|+... -.|..++- .+
T Consensus 196 l~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sG-t~-tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 196 LDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSG-TR-TLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred CceEEEechhHHHHHHHHHHHHHHhCceEeecCCC-ce-ehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 9999999863 4567788999999999999862 21 11111112222 22222234554211 11222221 23
Q ss_pred hhHHHHHHH-HhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC--------CCCC------
Q psy14801 169 ETTAEEILR-DTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ--------SLND------ 230 (404)
Q Consensus 169 ~~~a~ei~~-q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~--------~~~~------ 230 (404)
..++.|--. +++ +.||.+|.++|+|++.+|+..-|+.- .-+++|+|+..+.....+. ..+.
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~t 352 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTT 352 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeeccccccccccee
Confidence 455554332 332 35999999999999999998888653 3357788776554221110 0110
Q ss_pred -----------CCCCCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH
Q psy14801 231 -----------VPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA 299 (404)
Q Consensus 231 -----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l 299 (404)
.+..+.....-.|++..+ ..+......+++.++|.|.++..+.+.+.+||+..+-+..+++|...+.
T Consensus 353 y~lq~~dGqi~~phsIsAGLdYpGvgPel--s~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lc 430 (477)
T KOG1395|consen 353 YVLQDTDGQIFDPHSISAGLDYPGVGPEL--SHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELC 430 (477)
T ss_pred eeeeccCCccccCCccccCCCCCCCChhH--HHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhc
Confidence 000111111112222111 1112334568899999999999999999999999999999999999999
Q ss_pred HhcCCCCeEEEEecCCCCCccc
Q psy14801 300 KSLRPDQRCVVILADGVRNYLT 321 (404)
Q Consensus 300 k~~~~~~~vv~v~~~~~~~~~~ 321 (404)
|+.+++..||+-.+|.+.+-+.
T Consensus 431 k~l~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 431 KTLPEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred cccCCCcEEEEEecCCCCchHH
Confidence 9999999999999998865443
No 88
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=195.04 Aligned_cols=289 Identities=19% Similarity=0.185 Sum_probs=197.6
Q ss_pred CCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHc
Q psy14801 20 VPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIK 96 (404)
Q Consensus 20 ~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~ 96 (404)
+-.+|||++..+|.+-+| ++||+|.|+..||||||...|....-.++..|. ..+++ .+.|.+|.|++.+|+.+
T Consensus 75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf 150 (432)
T COG1350 75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALF 150 (432)
T ss_pred hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHh
Confidence 335899999999988655 599999999999999999999999999998887 55554 55889999999999999
Q ss_pred CCeEEEEecC---CCCHHHHHHHHHcCCEEEEeCCCCCCCCh---------------hhHHHHHHHHHHhCCCcEeecCC
Q psy14801 97 GYKMVVVMPM---KMSKEKVYTMKALGAKIIRTQNDKSYDHP---------------EGMIAGAHRIASQMKNAVVLDQF 158 (404)
Q Consensus 97 G~~~~iv~p~---~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~---------------~~~~~~a~~l~~~~~~~~~~~e~ 158 (404)
|++|+|||-. ...+.++.+|+.+||+|+..|.+ ..+. .-++..|-+.+-++++.-|....
T Consensus 151 ~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~--~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGS 228 (432)
T COG1350 151 GLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSE--LTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGS 228 (432)
T ss_pred CceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcc--hhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchh
Confidence 9999999976 45677889999999999998863 1111 11122232333233323332110
Q ss_pred -CCCCChhhHHhhHHHHHHH---HhCCCcCEEEEccCCChhHHHHHHHHHHhC----CCcEEEEEcCCCCcccccCCCCC
Q psy14801 159 -RNPNNPLSHYETTAEEILR---DTGGKVDMIVLGCGTGGTASGIGRKIKEKC----PSCKLVGADPFGSILAQPQSLND 230 (404)
Q Consensus 159 -~np~~si~g~~~~a~ei~~---q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~----~~~~vi~V~p~~~~~~~~~~~~~ 230 (404)
.| +.+-|+--+++|..+ ++++.||.+|-++|+|++++|+..-|.... ..+++|+|+|..++.+......-
T Consensus 229 Vln--hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~Y 306 (432)
T COG1350 229 VLN--HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRY 306 (432)
T ss_pred HHH--HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeec
Confidence 11 123577888999854 455679999999999999999999887632 22799999999997654432221
Q ss_pred -CCCCCCc--cccccCCCCcccccc-----------------cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhh
Q psy14801 231 -VPENQIS--YNEVEGIGYSFAATT-----------------LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGT 290 (404)
Q Consensus 231 -~~~~~~~--~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~ 290 (404)
.+++... ...+-.++..+.|-- +.+.-.-+....+..|+++++..+++.+|++-.|-|+.
T Consensus 307 D~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaH 386 (432)
T COG1350 307 DFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAH 386 (432)
T ss_pred cCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchh
Confidence 1111000 000111222221111 11111224456788999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCC--eEEEEecCCC
Q psy14801 291 AMHVACQAAKSLR-PDQ--RCVVILADGV 316 (404)
Q Consensus 291 tlag~~~~lk~~~-~~~--~vv~v~~~~~ 316 (404)
++.++.+.+.+.. .+. .|++-.+|++
T Consensus 387 Ai~~aid~A~~a~~~geekvI~fnlSGHG 415 (432)
T COG1350 387 AIKAAIDEALKAREEGEEKVILFNLSGHG 415 (432)
T ss_pred hHHHHHHHHHhccccCceeEEEEeccCcc
Confidence 9999988876532 233 3444445444
No 89
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.93 E-value=1.4e-25 Score=216.92 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=162.0
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~ 224 (404)
..+|+ +|+.||++|.| +|.|..|+.++.++ |+ ..||+++||| +|+++|+.++..|+++++|+|++.+...
T Consensus 74 ~~I~~KlE~~nPtGS~K--dR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN--~G~alA~~a~~~G~~~~ivvp~~~~~~k 149 (368)
T PLN02556 74 AYIAAKQEMFQPTSSIK--DRPALAMIEDAEKKNLITPGKTTLIEPTSGN--MGISLAFMAAMKGYKMILTMPSYTSLER 149 (368)
T ss_pred CEEEEEecccCCccchH--HHHHHHHHHHHHHcCCcCCCCCEEEEeCCch--HHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 45666 99999999999 99999999988643 44 4788999999 9999999999999999999999865322
Q ss_pred cCCCCCCCCCCCccccccCCCC------cccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhH
Q psy14801 225 PQSLNDVPENQISYNEVEGIGY------SFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTA 291 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~t 291 (404)
...+...++.........+.+. .......+..+++|+.+..+.++ ..++.||+++. .||++.|||++
T Consensus 150 ~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt 229 (368)
T PLN02556 150 RVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGT 229 (368)
T ss_pred HHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchH
Confidence 1111111111100000000000 01111111233455555555554 24677777764 38999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCC--------ccccccchh--------HHhhcCccCcHHHHHH------------
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRN--------YLTKFISDE--------WMIEKGFLDEAEELEE------------ 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~--------~~~~~~~~~--------~~~~~~~~~~~~~~~~------------ 343 (404)
++|+.+++|+.+|+.+|++|++.+... +...+++.. -..+..+.++|+++..
T Consensus 230 ~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~ 309 (368)
T PLN02556 230 VSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLM 309 (368)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCE
Confidence 999999999999999999999966421 111111101 1223345566666555
Q ss_pred -hccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhccCCHHHHHHc
Q psy14801 344 -MIHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISDEWMIEK 391 (404)
Q Consensus 344 -g~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~~~~~~w~~~~ 391 (404)
+.|||+++++|++++++.. ++++||+|+||+|+||+|++|+++|+++-
T Consensus 310 vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~ 359 (368)
T PLN02556 310 VGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEA 359 (368)
T ss_pred EecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHH
Confidence 3499999999999998753 57899999999999999999999999764
No 90
>PLN02565 cysteine synthase
Probab=99.92 E-value=7.8e-25 Score=208.78 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=160.6
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
.+|+ +|+.||++|.| +|.|..|+..+.+ .++ ..||+++||| +|+++|+.++..|+++++|+|++++....
T Consensus 31 ~i~~K~E~~nPtGSfK--dR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~ 106 (322)
T PLN02565 31 RIAAKLEMMEPCSSVK--DRIGYSMITDAEEKGLIKPGESVLIEPTSGN--TGIGLAFMAAAKGYKLIITMPASMSLERR 106 (322)
T ss_pred eEEEEecccCCccchH--HHHHHHHHHHHHHcCCCCCCCcEEEEECCCh--HHHHHHHHHHHcCCeEEEEeCCCCcHHHH
Confidence 4666 99999999999 9999999988753 245 5699999999 99999999999999999999999754322
Q ss_pred CCCCCCCCCCCc-cc--cc-c--CCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhHH
Q psy14801 226 QSLNDVPENQIS-YN--EV-E--GIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTAM 292 (404)
Q Consensus 226 ~~~~~~~~~~~~-~~--~~-~--~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~tl 292 (404)
..+......... .. .. . .....+....-+..+++++.+..++++. .++.||+++.+ +|+..|||+++
T Consensus 107 ~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l 186 (322)
T PLN02565 107 IILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTI 186 (322)
T ss_pred HHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHH
Confidence 222211111100 00 00 0 0000000000012344555555455542 34567777653 88899999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchh-------H-HhhcCccCcHHHHHHh------------
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDE-------W-MIEKGFLDEAEELEEM------------ 344 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~-------~-~~~~~~~~~~~~~~~g------------ 344 (404)
+|+.+++|+..|+.+|++|+|.++..+ ...+++.. | ..|..+.++|+++..+
T Consensus 187 ~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~v 266 (322)
T PLN02565 187 TGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLV 266 (322)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEE
Confidence 999999999999999999999664221 11121111 1 2344456777776553
Q ss_pred -ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHH
Q psy14801 345 -IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI 389 (404)
Q Consensus 345 -~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~ 389 (404)
.|||++++++++++++. .++++||+|+||+|+||++|+++++|+.
T Consensus 267 g~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~ 313 (322)
T PLN02565 267 GISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKK 313 (322)
T ss_pred eccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHH
Confidence 49999999999999875 4578999999999999999988888874
No 91
>PLN03013 cysteine synthase
Probab=99.91 E-value=3.3e-24 Score=208.40 Aligned_cols=235 Identities=15% Similarity=0.194 Sum_probs=160.3
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~ 224 (404)
..+|+ +|+.||++|+| ||.|..|+.+++++ |+ ..||+++||| +|+++|+.++..|+++++|+|++.+...
T Consensus 138 ~~Iy~KlE~lNPtGSfK--dR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN--~G~ALA~~a~~~G~~~~VvvP~~~s~~K 213 (429)
T PLN03013 138 ANIAAKLEIMEPCCSVK--DRIGYSMVTDAEQKGFISPGKSVLVEPTSGN--TGIGLAFIAASRGYRLILTMPASMSMER 213 (429)
T ss_pred CeEEEEeccCCCccccH--HHHHHHHHHHHHHcCCcCCCCcEEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCCcHHH
Confidence 35666 99999999999 99999999988642 55 6799999999 9999999999999999999999875432
Q ss_pred cCCCCCCCCCCCccccccC------CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhhH
Q psy14801 225 PQSLNDVPENQISYNEVEG------IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGTA 291 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~t 291 (404)
...+...++.........+ ....+.....+..+++|+.+..+.++. .++.||+++. .+|++.||||+
T Consensus 214 ~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGt 293 (429)
T PLN03013 214 RVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGT 293 (429)
T ss_pred HHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Confidence 2212111111100000000 000011111122345666666665542 4567777764 38899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchhH--------HhhcCccCcHHHHHH------------
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDEW--------MIEKGFLDEAEELEE------------ 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~~--------~~~~~~~~~~~~~~~------------ 343 (404)
++|+.+++|+..|+.+|++|+|.+...+ ...+++..+ ..|..+.++|++++.
T Consensus 294 isGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~ 373 (429)
T PLN03013 294 ITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLM 373 (429)
T ss_pred HHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999999664221 112222111 234445677777665
Q ss_pred -hccchhHHHHHHHHHHhcC-CCCeE-EEEEcCCCcchhhc--cCC-HHHHH
Q psy14801 344 -MIHSGTAMHVACQAAKSLR-PDQRC-VVILADGVRNYLTK--FIS-DEWMI 389 (404)
Q Consensus 344 -g~SsGa~~~~a~~~~~~~~-~~~~i-v~i~~D~g~rYl~~--~~~-~~w~~ 389 (404)
+.|||++++|+++++++.. .+++| |+|+||+|+||+++ .|+ ..|++
T Consensus 374 vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~~~~~~~~~~~ 425 (429)
T PLN03013 374 VGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRCSSLSGKRWRK 425 (429)
T ss_pred EecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhhhcCCCcchhh
Confidence 3499999999999998654 46665 77788999999998 354 67874
No 92
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.91 E-value=4.2e-24 Score=214.74 Aligned_cols=240 Identities=22% Similarity=0.307 Sum_probs=161.9
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc-
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ- 224 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~- 224 (404)
..+|+ +|+.||++|.| +|.|..++.++.+ .++..|++++||| +|+++|+.++..|+++++|+|++.+...
T Consensus 26 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k~ 101 (454)
T TIGR01137 26 CELLAKCEFFNPGGSVK--DRIALRMIEDAEASGRLKPGDTIIEPTSGN--TGIGLALVAAIKGYKCIIVLPEKMSNEKV 101 (454)
T ss_pred ceEEEEEhhcCCCcchH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCeEEEEeCCCcCHHHH
Confidence 35666 99999999999 9999999988753 2556789999999 9999999999999999999998874321
Q ss_pred ------cCCCCCCCCCC-Ccc-----ccccCCCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEec
Q psy14801 225 ------PQSLNDVPENQ-ISY-----NEVEGIGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVG 285 (404)
Q Consensus 225 ------~~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~ 285 (404)
+..+...+... ... ..+..+ ........+.++|.+..++.. ..++.||+++. .+|++
T Consensus 102 ~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l----~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~ 177 (454)
T TIGR01137 102 DVLKALGAEIVRTPTAAAFDSPESHIGVAKRL----VREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAG 177 (454)
T ss_pred HHHHHCCCEEEEcCCccCCCchHHHHHHHHHH----HHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEe
Confidence 11111111000 000 000000 000001112233333333332 23355566553 48999
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC-------------ccccccchh-H-------HhhcCccCcHHHHHH-
Q psy14801 286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRN-------------YLTKFISDE-W-------MIEKGFLDEAEELEE- 343 (404)
Q Consensus 286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~-------------~~~~~~~~~-~-------~~~~~~~~~~~~~~~- 343 (404)
.|||++++|+.+++++..|+.+|++|+|.+..- +...+++.. + ..+..+.++++++++
T Consensus 178 vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a 257 (454)
T TIGR01137 178 AGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKM 257 (454)
T ss_pred cCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHH
Confidence 999999999999999999999999999954311 111111111 0 122334566666554
Q ss_pred ------------hccchhHHHHHHHHHH-hcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCchh
Q psy14801 344 ------------MIHSGTAMHVACQAAK-SLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 398 (404)
Q Consensus 344 ------------g~SsGa~~~~a~~~~~-~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~~ 398 (404)
+.|||+++++++++++ .++++++||+|+||+|+||++++|+++|+.++++..+.+
T Consensus 258 ~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~~~~~~ 325 (454)
T TIGR01137 258 ARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGFLDDEV 325 (454)
T ss_pred HHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCCccccc
Confidence 3499999999999988 577789999999999999999999999999999875433
No 93
>PRK10717 cysteine synthase A; Provisional
Probab=99.91 E-value=5.4e-24 Score=204.71 Aligned_cols=241 Identities=18% Similarity=0.230 Sum_probs=161.2
Q ss_pred CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801 150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224 (404)
Q Consensus 150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~ 224 (404)
+..+|+ +|+.||++|.| +|.+..++.++.. .++..|+++++|| +|+++|+.++..|+++++|+|...+...
T Consensus 27 g~~i~~K~E~~nptGS~K--~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~vv~p~~~~~~k 102 (330)
T PRK10717 27 GCEILGKAEFLNPGGSVK--DRAALNIIWDAEKRGLLKPGGTIVEGTAGN--TGIGLALVAAARGYKTVIVMPETQSQEK 102 (330)
T ss_pred CCeEEEEeeccCCCCCch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 345666 99999999999 9999999887753 2556789999999 9999999999999999999999874321
Q ss_pred cCCCCCCCCCCC--ccc-------cc---cCCCCcccccc-cCccccCcEEecChHHH--HHHHHHHHHhcC-----cEe
Q psy14801 225 PQSLNDVPENQI--SYN-------EV---EGIGYSFAATT-LDRNVIDQWGKCGDKDT--FLMARRLIKSEG-----LLV 284 (404)
Q Consensus 225 ~~~~~~~~~~~~--~~~-------~~---~~i~~~~~~~~-~~~~~~~~~~~v~d~e~--~~~~~~l~~~~g-----i~~ 284 (404)
...+........ ... .. ..+........ -...+++++.+..+.+. ..++.||+++.+ +++
T Consensus 103 ~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~ 182 (330)
T PRK10717 103 KDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVC 182 (330)
T ss_pred HHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEE
Confidence 111111111000 000 00 00000000000 01122333333322223 134566666653 888
Q ss_pred ccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cccccc--------hhHHhhcCccCcHHHHH
Q psy14801 285 GGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY--------------LTKFIS--------DEWMIEKGFLDEAEELE 342 (404)
Q Consensus 285 ~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~~~~~--------~~~~~~~~~~~~~~~~~ 342 (404)
..|||++++|+.+.+++..|+.+|++|+|.+..-+ +...++ .....+..+.++|+++.
T Consensus 183 ~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~ 262 (330)
T PRK10717 183 AVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEAL 262 (330)
T ss_pred ecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHH
Confidence 88999999999999999889999999999654211 111111 00122334556776665
Q ss_pred Hh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801 343 EM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL 394 (404)
Q Consensus 343 ~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~ 394 (404)
++ .|||+++++++++++++.++++||+|+||+|+||++++|||+|+.++++.
T Consensus 263 ~a~~~l~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~~~ 327 (330)
T PRK10717 263 STAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDFLREKGLP 327 (330)
T ss_pred HHHHHHHHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccCHHHHHhcCCC
Confidence 53 39999999999999887778999999999999999999999999999874
No 94
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.90 E-value=5.1e-23 Score=194.03 Aligned_cols=227 Identities=15% Similarity=0.203 Sum_probs=152.9
Q ss_pred CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801 150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224 (404)
Q Consensus 150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~ 224 (404)
+..+|+ +|+.||+||.| +|.+..++..+.. .++..||++++|| +|+++|+.++..|+++++++|++.+...
T Consensus 22 g~~i~~K~E~~nptGS~K--~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~~~k 97 (290)
T TIGR01138 22 GSEVWLKLEGNNPAGSVK--DRPALSMIVEAEKRGEIKPGDVLIEATSGN--TGIALAMIAALKGYRMKLLMPDNMSQER 97 (290)
T ss_pred CCeEEEEEccCCCCccHH--HHHHHHHHHHHHHcCCCCCCCEEEEECCCh--HHHHHHHHHHHcCCeEEEEECCCCCHHH
Confidence 345666 99999999999 9999999988753 2457899999999 9999999999999999999999875322
Q ss_pred cCCCCCCCCCCCccc---ccc---CCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhhH
Q psy14801 225 PQSLNDVPENQISYN---EVE---GIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGTA 291 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~t 291 (404)
...+........... ... .....+ .......+++++.+..+++.+ .++.||+++. .+|+..|||++
T Consensus 98 ~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~ 176 (290)
T TIGR01138 98 KAAMRAYGAELILVTKEEGMEGARDLALEL-ANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGT 176 (290)
T ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHH-HHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHH
Confidence 111111111100000 000 000000 000011233444444444442 3456666654 38889999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCc----------cccccchhHHhhcCccCcHHHHHHh-------------ccch
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNY----------LTKFISDEWMIEKGFLDEAEELEEM-------------IHSG 348 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g-------------~SsG 348 (404)
++|+.+++|+..|+.+|++|+|.++... .+..+ +.-..|..+.++|++++.+ .|||
T Consensus 177 ~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~-~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssg 255 (290)
T TIGR01138 177 IMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIF-DASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSG 255 (290)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCccc-ChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHH
Confidence 9999999999999999999999764221 11111 1112334456777776653 4999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cC
Q psy14801 349 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FI 383 (404)
Q Consensus 349 a~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~ 383 (404)
+++++++++++++ ++++||+|+||+|+||+|| +|
T Consensus 256 a~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 256 GAVAAALRLAREL-PDAVVVAIICDRGDRYLSTGVF 290 (290)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCCCccccCcccC
Confidence 9999999998887 6789999999999999998 44
No 95
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.89 E-value=8.3e-23 Score=193.00 Aligned_cols=227 Identities=14% Similarity=0.185 Sum_probs=148.9
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
..+|+ +|+.||++|.| +|.+..++.++..+ ++..||+++||| +|+++|+.++..|+++++++|++.+....
T Consensus 27 ~~i~~K~E~~nptGS~K--~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~~~k~ 102 (296)
T PRK11761 27 NTILAKLEGNNPAGSVK--DRPALSMIVQAEKRGEIKPGDTLIEATSGN--TGIALAMIAAIKGYRMKLIMPENMSQERR 102 (296)
T ss_pred CEEEEEEcccCCCCCch--hHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 35666 99999999999 99999999887632 456789999999 99999999999999999999998753211
Q ss_pred CCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHh-----cCcEeccchhhHH
Q psy14801 226 QSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKS-----EGLLVGGSSGTAM 292 (404)
Q Consensus 226 ~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~-----~gi~~~~~tg~tl 292 (404)
..+........... .... ....+ .......+.+++.+..+++.. .++.||+++ +.+++..|||+++
T Consensus 103 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~ 181 (296)
T PRK11761 103 AAMRAYGAELILVPKEQGMEGARDLALQM-QAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTI 181 (296)
T ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHH-HhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHH
Confidence 11111111100000 0000 00000 000011122333222222221 233444444 3488999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCcc----------ccccchhHHhhcCccCcHHHHHH-------------hccchh
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNYL----------TKFISDEWMIEKGFLDEAEELEE-------------MIHSGT 349 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------g~SsGa 349 (404)
+|+.+++|+..|+.+|++|+|.++.... ...+ +....|..+.++|+++.. +.|||+
T Consensus 182 ~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~-~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga 260 (296)
T PRK11761 182 MGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIF-DASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGG 260 (296)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCccc-ChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHH
Confidence 9999999999999999999997642211 1111 111233445677776655 349999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cCC
Q psy14801 350 AMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FIS 384 (404)
Q Consensus 350 ~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~~ 384 (404)
+++++++++++. ++++||+|+||+|+||++| +|+
T Consensus 261 ~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 261 AVAAALRIAREN-PNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCCCcccCChhccc
Confidence 999999998874 6789999999999999999 775
No 96
>PLN00011 cysteine synthase
Probab=99.87 E-value=7.3e-22 Score=189.00 Aligned_cols=238 Identities=17% Similarity=0.177 Sum_probs=158.9
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
.+|+ +|+.||++|.| +|.+..++.++.++ |+ ..||++++|| +|+++|+.++..|+++++|+|.+.+....
T Consensus 33 ~i~~K~E~~nPtGS~K--~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~ 108 (323)
T PLN00011 33 RIAAKLEMMEPCSSVK--DRIAYSMIKDAEDKGLITPGKSTLIEATAGN--TGIGLACIGAARGYKVILVMPSTMSLERR 108 (323)
T ss_pred eEEEEecccCCccccc--hHHHHHHHHHHHHcCCCCCCCcEEEEeCCCh--HHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Confidence 5666 99999999999 99999999887643 44 5678899999 99999999999999999999998753211
Q ss_pred CCCCCCCCCCCc---cccccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhHH
Q psy14801 226 QSLNDVPENQIS---YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTAM 292 (404)
Q Consensus 226 ~~~~~~~~~~~~---~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~tl 292 (404)
..+......... .....+ ....+.....+..+++++.+..++++ ..++.||+++. .+|+..|||+++
T Consensus 109 ~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~ 188 (323)
T PLN00011 109 IILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTA 188 (323)
T ss_pred HHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHH
Confidence 111111111000 000000 00000000011123344444445554 24567777764 389999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccch-----hH---HhhcCccCcHHHHHHh------------
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISD-----EW---MIEKGFLDEAEELEEM------------ 344 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~-----~~---~~~~~~~~~~~~~~~g------------ 344 (404)
+|+.+++|+..|+.+|++|++.+...+ ....++. .+ ..|..+.++|+++...
T Consensus 189 aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~ 268 (323)
T PLN00011 189 TGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLV 268 (323)
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeE
Confidence 999999999999999999999654221 1111111 11 1233345677666553
Q ss_pred -ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHH-cCC
Q psy14801 345 -IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIE-KGF 393 (404)
Q Consensus 345 -~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~-~~~ 393 (404)
.|||++++++++++++. .++++||+|+||+|.||+||.+.+.|+.+ .++
T Consensus 269 ~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~ 320 (323)
T PLN00011 269 GISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENL 320 (323)
T ss_pred cccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcC
Confidence 39999999999998764 35789999999999999999666789987 454
No 97
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.83 E-value=5e-20 Score=174.86 Aligned_cols=226 Identities=18% Similarity=0.218 Sum_probs=149.7
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
..+|+ +|+.||++|.| +|.+..++..+.++ ++..|+++++|| +|.++|+.++..|+++++|+|++.+....
T Consensus 21 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~Gl~~~i~vp~~~~~~k~ 96 (298)
T TIGR01139 21 ANVFVKLEGRNPSGSVK--DRIALNMIWDAEKRGLLKPGKTIVEPTSGN--TGIALAMVAAARGYKLILTMPETMSIERR 96 (298)
T ss_pred ceEEEEEcccCCCCcch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--hHHHHHHHHHHcCCeEEEEeCCccCHHHH
Confidence 35666 89999999999 99999999887532 456789999999 99999999999999999999998743211
Q ss_pred CCCCCCCCCCC---cccc-cc--CCCCcccccccC--ccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhh
Q psy14801 226 QSLNDVPENQI---SYNE-VE--GIGYSFAATTLD--RNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGT 290 (404)
Q Consensus 226 ~~~~~~~~~~~---~~~~-~~--~i~~~~~~~~~~--~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~ 290 (404)
..+........ .... .. .....+ ..... ..+++++.+..++... ..+.||++|. .+++..|||+
T Consensus 97 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg 175 (298)
T TIGR01139 97 KLLKAYGAELVLTPGAEGMKGAIAKAEEI-AASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGG 175 (298)
T ss_pred HHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhH
Confidence 11111111100 0000 00 000000 00000 1123343333333332 2445665553 4888999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccch--------hHHhhcCccCcHHHHHHh----------
Q psy14801 291 AMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKFISD--------EWMIEKGFLDEAEELEEM---------- 344 (404)
Q Consensus 291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~g---------- 344 (404)
+++|+.+.+++..++.+|++|+|.+...+. ...++. ....|..+.++|+++..+
T Consensus 176 ~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi 255 (298)
T TIGR01139 176 TITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGI 255 (298)
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCc
Confidence 999999999999899999999997642211 111111 112334456777776653
Q ss_pred ---ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 345 ---IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 345 ---~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
.|||+++++++++++++.++++||+|+||+|+||+++
T Consensus 256 ~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~ 295 (298)
T TIGR01139 256 LVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLST 295 (298)
T ss_pred eEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCc
Confidence 3899999999999988777899999999999999998
No 98
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=162.32 Aligned_cols=292 Identities=18% Similarity=0.228 Sum_probs=208.9
Q ss_pred CCCCCCCeeecCCCCC--------CCCCeEEEEeCCCCC-CCChhhHHHHHHH-HHH----HHhCCCCC-----------
Q psy14801 19 TVPGKVPLLPQSKQGS--------ILLPTTDAKCEFMNP-TGSLKDRAAWRMI-EDA----ETAGVLKP----------- 73 (404)
Q Consensus 19 ~~~g~TPl~~~~~l~~--------~~g~~l~~K~E~~~p-tGS~K~R~a~~~l-~~a----~~~g~~~~----------- 73 (404)
.++-.+||++++.... .+..++|+|++++-| +||+|.|+..+-+ .+| ++.|.+.-
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 3556789999876533 233499999999999 8999999876544 333 45565442
Q ss_pred ------CCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 74 ------GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 74 ------~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
...|.+.|+||.|.++...++.+|+++++-|.......|.+++++.|.+|+.... +|.. +++.-++-++
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~---AVeeGRk~a~ 228 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGV---AVEEGRKEAE 228 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhH---HHHHhhhhhc
Confidence 2279999999999999999999999999999999999999999999999999875 4543 3555666677
Q ss_pred hCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHhCC-CcEEEEEcCC
Q psy14801 148 QMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEKCP-SCKLVGADPF 218 (404)
Q Consensus 148 ~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~~~-~~~vi~V~p~ 218 (404)
..|..||++. .|...-.-||...|..+-.|+.. .|=.+.+|+|-||.-.|++.+++-.+. .+.+.-++|.
T Consensus 229 ~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPt 307 (443)
T COG3048 229 SDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPT 307 (443)
T ss_pred cCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCC
Confidence 7778888742 23333446888888888777753 266788999999988999999988764 4778889999
Q ss_pred CCcccccC-------CCCCCCCCCCccccccCCCCcccc---cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801 219 GSILAQPQ-------SLNDVPENQISYNEVEGIGYSFAA---TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSS 288 (404)
Q Consensus 219 ~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~t 288 (404)
.++++.-. .+....-.....+.++|++..... ........+.+++++|...+.....+++.+|+..+||.
T Consensus 308 hsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSa 387 (443)
T COG3048 308 HSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSA 387 (443)
T ss_pred CChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchh
Confidence 98764321 111111111112223343222211 12223467899999999999999999999999999998
Q ss_pred hhHHHHHHHHHHh-------------cCCCCeEEEEecCCC
Q psy14801 289 GTAMHVACQAAKS-------------LRPDQRCVVILADGV 316 (404)
Q Consensus 289 g~tlag~~~~lk~-------------~~~~~~vv~v~~~~~ 316 (404)
-+.++|..+..+. .-.+..-+++.||++
T Consensus 388 lAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~ 428 (443)
T COG3048 388 LAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGG 428 (443)
T ss_pred hhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCC
Confidence 8888887655431 112456677777764
No 99
>PRK06608 threonine dehydratase; Provisional
Probab=99.81 E-value=5.5e-20 Score=176.67 Aligned_cols=242 Identities=12% Similarity=0.062 Sum_probs=156.2
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
..+.+..+..+|+ +|+.||.+|.| +|.|..++.++.++ ....||++++|| +|+++|+.++..|+++++|+|.+
T Consensus 30 ~~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~v~~a~~~g~~~~~vv~~SsGN--~g~alA~~a~~~G~~~~vv~p~~ 105 (338)
T PRK06608 30 ESLNEMLGHEIFFKVESLQKTGAFK--VRGVLNHLLELKEQGKLPDKIVAYSTGN--HGQAVAYASKLFGIKTRIYLPLN 105 (338)
T ss_pred HhHHHHhCCEEEEEeCCCCCCCCcH--HHHHHHHHHHhhhhcCcCCeEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 3444444446777 99999999999 99999999988743 224678889999 99999999999999999999998
Q ss_pred CcccccCCCCCCCCCCCcc---ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchhh
Q psy14801 220 SILAQPQSLNDVPENQISY---NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSGT 290 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg~ 290 (404)
.+......+...+...... ......... .......+.+++.+....+.. .++.||+++. .+++..|||+
T Consensus 106 ~~~~k~~~l~~~GA~V~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GG 183 (338)
T PRK06608 106 TSKVKQQAALYYGGEVILTNTRQEAEEKAKE--DEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGG 183 (338)
T ss_pred CCHHHHHHHHhCCCEEEEECCHHHHHHHHHH--HHhCCCEEcCCCCCHHHhccHHHHHHHHHHhcCCCcCEEEEeechhH
Confidence 7532111111111110000 000000000 000011122332222111111 1244555544 3889999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cccccchh----------H----HhhcCccCcHHHHH
Q psy14801 291 AMHVACQAAKSLRPDQRCVVILADGVRNY--------------LTKFISDE----------W----MIEKGFLDEAEELE 342 (404)
Q Consensus 291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~~~~~~~----------~----~~~~~~~~~~~~~~ 342 (404)
+++|+.+.+|+.+++.+|++|+|.+.... ....+.+. | ..|..+.++|+++.
T Consensus 184 t~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~ 263 (338)
T PRK06608 184 LISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIY 263 (338)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHH
Confidence 99999999999999999999999654210 00111100 1 12333557777766
Q ss_pred H-------------hccchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHH
Q psy14801 343 E-------------MIHSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIE 390 (404)
Q Consensus 343 ~-------------g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~ 390 (404)
. +.|||++++++++++++..++++||+|+||++ .+|++++|+++||.+
T Consensus 264 ~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~~ 326 (338)
T PRK06608 264 YWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSGGNIDPILYNELWKEDYLTI 326 (338)
T ss_pred HHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCCCccCHHHHHHHHHHhhhcC
Confidence 5 34999999999999877667899999999977 899999999999954
No 100
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.80 E-value=2.8e-19 Score=169.75 Aligned_cols=227 Identities=20% Similarity=0.222 Sum_probs=147.8
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
..+|+ +|+.||.+|.| +|.+..++..+.+ .++..|+++++|| .|+++|+.++..|+++++++|...+....
T Consensus 22 ~~i~~K~E~~~ptGS~K--~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~vp~~~~~~k~ 97 (299)
T TIGR01136 22 ARVLAKLEGRNPSGSVK--DRIALSMIEDAEKRGLLKPGDTIIEATSGN--TGIALAMVAAAKGYKLILTMPETMSLERR 97 (299)
T ss_pred ceEEEEEcccCCCCCcc--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 35666 89999999999 9999998887642 2456789999999 99999999999999999999998753211
Q ss_pred CCCCCCCCCCCc---ccccc---CCCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhHH
Q psy14801 226 QSLNDVPENQIS---YNEVE---GIGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTAM 292 (404)
Q Consensus 226 ~~~~~~~~~~~~---~~~~~---~i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~tl 292 (404)
..+......... ..... .....+....-...+++++.+..++.. .....||+++. .+++..|||+++
T Consensus 98 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~ 177 (299)
T TIGR01136 98 KLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTI 177 (299)
T ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHH
Confidence 111111111000 00000 000000000000112233333333333 13455666654 388888999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccch--------hHHhhcCccCcHHHHHHh------------
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNYL--------TKFISD--------EWMIEKGFLDEAEELEEM------------ 344 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~g------------ 344 (404)
+|+.+++++..++.+|++|+|.+...+. ...+.. ....+..+.++|+++.++
T Consensus 178 ~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ 257 (299)
T TIGR01136 178 TGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILV 257 (299)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceE
Confidence 9999999998899999999997653321 111111 012234456777776553
Q ss_pred -ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhc
Q psy14801 345 -IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 345 -~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~ 381 (404)
.|||++++++++++++.. ++++||+|+||+|.||+++
T Consensus 258 e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~ 296 (299)
T TIGR01136 258 GISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLST 296 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCc
Confidence 399999999999988753 4899999999999999998
No 101
>PRK06721 threonine synthase; Reviewed
Probab=99.79 E-value=3.1e-19 Score=172.80 Aligned_cols=247 Identities=13% Similarity=0.079 Sum_probs=153.1
Q ss_pred HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-cc
Q psy14801 145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-IL 222 (404)
Q Consensus 145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~~ 222 (404)
+.+..+..+|+ +|+.||.+|.| +|.|..++.++.++-...||+++||| +|+++|+.++..|+++++|+|++. +.
T Consensus 37 l~~~~g~~i~~K~E~~nptGS~K--dR~a~~~i~~a~~~g~~~vV~aSsGN--~G~alA~~aa~~G~~~~vvvp~~~~~~ 112 (352)
T PRK06721 37 ISKQLGIQLYGKYEGANPTGSFK--DRGMVMAVAKAKEEGSEAIICASTGN--TSASAAAYAARLGMKCIIVIPEGKIAH 112 (352)
T ss_pred hHHHhCCeEEEEecCCCCccchH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHCCCcEEEEECCCCCCH
Confidence 34333334666 99999999999 99999999888754334677889999 999999999999999999999874 22
Q ss_pred cccCCCCCCCCCCC---cc-----ccccCCC--Cccccccc-CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801 223 AQPQSLNDVPENQI---SY-----NEVEGIG--YSFAATTL-DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA 291 (404)
Q Consensus 223 ~~~~~~~~~~~~~~---~~-----~~~~~i~--~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t 291 (404)
.....+....+... .. ..+..+. ......+. +.... ..+.....|+++++.. .-+.||+..|||++
T Consensus 113 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~n~~~~-~G~~t~~~Ei~eq~~~--~~D~ivv~vG~GG~ 189 (352)
T PRK06721 113 GKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSVNPYRI-EGQKTAAFEICDQLQR--APDVLAIPVGNAGN 189 (352)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccCCCchhh-hhhhhHHHHHHHHhCC--CCCEEEEeCCchHH
Confidence 11111111111100 00 0000000 00100011 11111 1123334444333321 12348999999999
Q ss_pred HHH----HHHHHHhcC-CCCeEEEEecCCCCCcc-----------ccccc----hhH---------HhhcCccCcHHHHH
Q psy14801 292 MHV----ACQAAKSLR-PDQRCVVILADGVRNYL-----------TKFIS----DEW---------MIEKGFLDEAEELE 342 (404)
Q Consensus 292 lag----~~~~lk~~~-~~~~vv~v~~~~~~~~~-----------~~~~~----~~~---------~~~~~~~~~~~~~~ 342 (404)
++| +.+++|+.. |+.+|+.|+|.+...+. ...+. ..| ..+..+.++|+++.
T Consensus 190 l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~ 269 (352)
T PRK06721 190 ITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEIL 269 (352)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHH
Confidence 996 677788764 88999999997642110 00110 111 11233457777766
Q ss_pred Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCchh
Q psy14801 343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 398 (404)
Q Consensus 343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~~ 398 (404)
++ .|+|++++++++++++ +.++++||+|+||+|.||+++++++.|....++.....
T Consensus 270 ~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~~~~~~~~~~~~ 340 (352)
T PRK06721 270 HAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNTLDIASVSNNIE 340 (352)
T ss_pred HHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhccCCcccCCccHH
Confidence 53 3889999999998874 56789999999999999999999999976555533333
No 102
>KOG1481|consensus
Probab=99.77 E-value=3.8e-19 Score=158.08 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=121.1
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p 217 (404)
+.|++..++.++. .||.||+||+| ||+|+.|++.+++. |+.+|+|.++|+ +||++|..+...||+++.++|
T Consensus 56 ~sLs~aTGcnIlaK~Ef~NPggS~K--DRvAl~iir~Aee~GkL~~gg~v~EGtaGs--TgIslA~v~~a~Gyk~~I~mP 131 (391)
T KOG1481|consen 56 NSLSNATGCNILAKAEFLNPGGSVK--DRVALYIIRTAEEKGKLVRGGTVVEGTAGS--TGISLAHVARALGYKCHIYMP 131 (391)
T ss_pred eccccccccchhhhhhccCCCCChh--hhhHHHHHHHHHHcCCcccCceEEecCCCc--cchhHHHhhhhcCcceEEECC
Confidence 4455666667776 89999999999 99999999999853 789999999999 999999999999999999999
Q ss_pred CCCccc-------ccCCCCCCCCCCCccc---------ccc-----CCC-Cccccccc-CccccCcEEecChHHHHHHHH
Q psy14801 218 FGSILA-------QPQSLNDVPENQISYN---------EVE-----GIG-YSFAATTL-DRNVIDQWGKCGDKDTFLMAR 274 (404)
Q Consensus 218 ~~~~~~-------~~~~~~~~~~~~~~~~---------~~~-----~i~-~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~ 274 (404)
+..+.. ........+..+.... ... +.+ ..+..+|+ +..++..||+.+.||||.+.+
T Consensus 132 ddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~Qtk 211 (391)
T KOG1481|consen 132 DDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTK 211 (391)
T ss_pred ChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhc
Confidence 876422 1122221111110000 000 011 13445666 345556778888888887765
Q ss_pred HHHHhcCcEeccchhhHHHHHHHHHHhcCCC-CeEEEEecCCC
Q psy14801 275 RLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGV 316 (404)
Q Consensus 275 ~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~-~~vv~v~~~~~ 316 (404)
. ..++|+++.+||||++|+.++||+.++. ..+++.+|-++
T Consensus 212 G--niDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGS 252 (391)
T KOG1481|consen 212 G--NIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGS 252 (391)
T ss_pred C--CcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 3 3467999999999999999999998776 67777777554
No 103
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.76 E-value=6e-18 Score=160.12 Aligned_cols=228 Identities=19% Similarity=0.215 Sum_probs=148.2
Q ss_pred CCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801 149 MKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA 223 (404)
Q Consensus 149 ~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~ 223 (404)
.+..+|+ +|+.||.+|.| +|.+..++.++..+ ++..|+++++|| .|.++|+.++..|+++++++|.+.+..
T Consensus 15 ~g~~i~~K~E~~~ptgS~K--~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN--~g~alA~~a~~~G~~~~i~vp~~~~~~ 90 (291)
T cd01561 15 TGAEIYAKLEFFNPGGSVK--DRIALYMIEDAEKRGLLKPGTTIIEPTSGN--TGIGLAMVAAAKGYRFIIVMPETMSEE 90 (291)
T ss_pred CCCeEEEEecccCCCCcch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 3345666 89999999999 99999888877532 346688899999 999999999999999999999986432
Q ss_pred ccCCCCCCCCCCC---ccc-----cccCCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccch
Q psy14801 224 QPQSLNDVPENQI---SYN-----EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSS 288 (404)
Q Consensus 224 ~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~t 288 (404)
....+........ ... ........+....-...+++++.+..+.+.+ ..+.||.++. .+++..||
T Consensus 91 k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~ 170 (291)
T cd01561 91 KRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGT 170 (291)
T ss_pred HHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCCh
Confidence 1111111111000 000 0000000000000011233333344444443 3346666654 38889999
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchh--------HHhhcCccCcHHHHHHh--------
Q psy14801 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDE--------WMIEKGFLDEAEELEEM-------- 344 (404)
Q Consensus 289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~--------~~~~~~~~~~~~~~~~g-------- 344 (404)
|++++|+.+.+++..++.+|++|++.+...+ ..++++.. ...+..+.++|+++..+
T Consensus 171 Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~ 250 (291)
T cd01561 171 GGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREE 250 (291)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHh
Confidence 9999999999999989999999999764322 01111111 02234455677666553
Q ss_pred -----ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhh
Q psy14801 345 -----IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380 (404)
Q Consensus 345 -----~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~ 380 (404)
.|||++++++++++++++++++||+|+||+|.||+|
T Consensus 251 gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 251 GLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291 (291)
T ss_pred CeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence 399999999999998876789999999999999986
No 104
>PRK06352 threonine synthase; Validated
Probab=99.75 E-value=5e-18 Score=164.21 Aligned_cols=227 Identities=10% Similarity=0.031 Sum_probs=143.5
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-c
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-I 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~ 221 (404)
++.+..+..+|+ +|+.||++|.| +|.|..++.++.++-...||++++|| +|+++|+.++..|+++++|+|++. +
T Consensus 36 ~l~~~~g~~l~~K~E~~nptGS~K--dR~a~~~i~~a~~~g~~~vV~aSsGN--~G~AlA~~aa~~G~~~~ivvp~~~~~ 111 (351)
T PRK06352 36 NLSKELGVTLYGKYEGLNPTGSFK--DRGMVMAVAKAKEEGAEAVICASTGN--TSAAAAAYATRAGLKAYIVIPEGKVA 111 (351)
T ss_pred hhHHHhCCeEEEEecCCCCccChH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 344433345666 99999999999 99999999887644334688889999 999999999999999999999874 3
Q ss_pred ccccCCCCCCCCCCC---cc-----ccccCCC--CcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEec
Q psy14801 222 LAQPQSLNDVPENQI---SY-----NEVEGIG--YSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVG 285 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~---~~-----~~~~~i~--~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~ 285 (404)
......+........ .. ..+..+. ...... +.++....+.+ ..+.|+++|. .+++.
T Consensus 112 ~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~n~~~~~G~~t~~~EI~~Q~~~~~D~vvv~ 183 (351)
T PRK06352 112 LGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLV--------NSVNPYRLEGQKTAAFEICEQLGSAPDVLAIP 183 (351)
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccc--------cCCCccceeeHHHHHHHHHHHcCCCCCEEEEE
Confidence 211111111111100 00 0000000 000000 01111111111 2344555444 48899
Q ss_pred cchhhHHHHHHHHHHhcCCC-----CeEEEEecCCCCCc-------cc----ccc--c--hhH-----Hhhc----CccC
Q psy14801 286 GSSGTAMHVACQAAKSLRPD-----QRCVVILADGVRNY-------LT----KFI--S--DEW-----MIEK----GFLD 336 (404)
Q Consensus 286 ~~tg~tlag~~~~lk~~~~~-----~~vv~v~~~~~~~~-------~~----~~~--~--~~~-----~~~~----~~~~ 336 (404)
.|||++++|+.+.+|+..++ .+|+.|+|.+.... .. ..+ . ..| ..+. .+.+
T Consensus 184 vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V 263 (351)
T PRK06352 184 VGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSV 263 (351)
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEE
Confidence 99999999999999987766 79999999664211 01 110 0 111 1121 3557
Q ss_pred cHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801 337 EAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF 382 (404)
Q Consensus 337 ~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~ 382 (404)
+|+++..+ .|||++++++++++++ +.++++||+|+||+|.||++++
T Consensus 264 ~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 264 TDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred CHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 77766553 3899999999998874 4568899999999999999975
No 105
>PRK07334 threonine dehydratase; Provisional
Probab=99.73 E-value=7.9e-18 Score=166.00 Aligned_cols=243 Identities=11% Similarity=0.074 Sum_probs=154.4
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.++.+..+..+|+ +|+.||++|.| +|.|..++.++..+ ...-||++++|| +|+++|+.++..|+++++|+|.+.
T Consensus 30 ~~l~~~~g~~l~~K~E~~nptGS~K--dR~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~ 105 (403)
T PRK07334 30 RTLSQITGAEVWLKFENLQFTASFK--ERGALNKLLLLTEEERARGVIAMSAGN--HAQGVAYHAQRLGIPATIVMPRFT 105 (403)
T ss_pred HHHHHhhCCeEEEEeccCCCCCCch--HHHHHHHHHhcCHHHhCCcEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence 3444443445776 99999999999 99999998876522 222378889999 999999999999999999999987
Q ss_pred cccccCCCCCCCCCCCcc-ccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801 221 ILAQPQSLNDVPENQISY-NEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA 291 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t 291 (404)
+......+.......... ..... ..... .......+.+++.+....+-+ ..+.|++++. .+|+..|||++
T Consensus 106 ~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~ 184 (403)
T PRK07334 106 PTVKVERTRGFGAEVVLHGETLDEARAHAREL-AEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGL 184 (403)
T ss_pred CHHHHHHHHHcCCEEEEECcCHHHHHHHHHHH-HHhcCCEecCCCCCHHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHH
Confidence 532211111111111000 00000 00000 000011223333333333333 3456676664 48899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCcc---------------ccccc--------hhH---HhhcCccCcHHHHHHhc
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNYL---------------TKFIS--------DEW---MIEKGFLDEAEELEEMI 345 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~---------------~~~~~--------~~~---~~~~~~~~~~~~~~~g~ 345 (404)
++|+.+.+|+.+|+.+|++|+|.+...+. ..++. ..+ ..|..+.++|+++..++
T Consensus 185 ~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 264 (403)
T PRK07334 185 ISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAV 264 (403)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHH
Confidence 99999999999999999999997642221 11111 011 23344567777776632
Q ss_pred -------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHHc
Q psy14801 346 -------------HSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIEK 391 (404)
Q Consensus 346 -------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~~ 391 (404)
|+|++++++++++++ .++++||+|+||+. .+++.++++..|+.+.
T Consensus 265 ~~l~~~~gi~v~~s~a~~~aa~~~~~~~-~~~~~vv~i~~ggn~d~~~l~~il~~~l~~~~ 324 (403)
T PRK07334 265 SLLLEIEKTVVEGAGAAGLAALLAYPER-FRGRKVGLVLSGGNIDTRLLANVLLRGLVRAG 324 (403)
T ss_pred HHHHHhcCCEEechHHHHHHHHHhCchh-cCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 777777777776665 46889999999975 7788888888877544
No 106
>PRK08638 threonine dehydratase; Validated
Probab=99.71 E-value=4e-17 Score=156.58 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=146.5
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
++.+..+..+|+ +|+.||++|.| +|.+..++..+.. .....|+++|||| +|+++|+.++..|+++++|+|++.+
T Consensus 35 ~l~~~~g~~i~~K~E~~nptGS~K--dR~a~~~i~~~~~~~~~~~vv~~SsGN--~g~alA~~aa~~G~~~~iv~p~~~~ 110 (333)
T PRK08638 35 YLSERCKGEIFLKLENMQRTGSFK--IRGAFNKLSSLTDAEKRKGVVACSAGN--HAQGVALSCALLGIDGKVVMPKGAP 110 (333)
T ss_pred hhHHhhCCeEEEEeccCCccCCcH--HHHHHHHHHhccHHhcCCeEEEeCCcH--HHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 344444456777 99999999999 9999999987653 1223678899999 9999999999999999999999875
Q ss_pred ccccCCCCCCCCCCC---cc---------ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801 222 LAQPQSLNDVPENQI---SY---------NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~---~~---------~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg 289 (404)
......+........ .. ......+ .++..++++...-..+.....|+++++. +-+.+|+..|||
T Consensus 111 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g-~~~~~~~~~~~~~~g~~t~a~Ei~~q~~---~~d~vv~~vG~G 186 (333)
T PRK08638 111 KSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEG-RTFIPPYDDPKVIAGQGTIGLEILEDLW---DVDTVIVPIGGG 186 (333)
T ss_pred HHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcC-CEEcCcCCCcchhccccHHHHHHHhhcC---CCCEEEEEeChh
Confidence 322111111111100 00 0000111 1222222211112223344445544332 235699999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCCCC------------c-cccccchh--------H-------HhhcCccCcHHHH
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGVRN------------Y-LTKFISDE--------W-------MIEKGFLDEAEEL 341 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~------------~-~~~~~~~~--------~-------~~~~~~~~~~~~~ 341 (404)
++++|+.+++|+.+|+.+|++|+|.+... . ....+.+. + ..|..+.++|+++
T Consensus 187 g~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea 266 (333)
T PRK08638 187 GLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEI 266 (333)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHH
Confidence 99999999999999999999999976311 0 11111111 1 2334456777777
Q ss_pred HHhc------------cchhHHHHHHHHHH--hcCCCCeEEEEEcCCCcchhhccC
Q psy14801 342 EEMI------------HSGTAMHVACQAAK--SLRPDQRCVVILADGVRNYLTKFI 383 (404)
Q Consensus 342 ~~g~------------SsGa~~~~a~~~~~--~~~~~~~iv~i~~D~g~rYl~~~~ 383 (404)
..++ +||++..|+++..+ ...++++||+|+|+ |..+++++.
T Consensus 267 ~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~ 321 (333)
T PRK08638 267 RNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSRVS 321 (333)
T ss_pred HHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHHHH
Confidence 6643 78888888888643 22367899999995 888988754
No 107
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.70 E-value=2.2e-16 Score=153.69 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=142.3
Q ss_pred HHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 143 HRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 143 ~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
.++.+.. +..+|+ +|+.||.+|.| +|.+..++..+.+ ..+.+|+++|||| +|+++|+.++..|+++++|+|..
T Consensus 41 ~~l~~~~g~~~l~~K~E~~nptgS~K--~R~a~~~~~~a~~~g~~~vv~~~ssGN--~g~alA~~a~~~G~~~~ivvp~~ 116 (365)
T cd06446 41 KRLSEYLGGAKIYLKREDLNHTGAHK--INNALGQALLAKRMGKKRVIAETGAGQ--HGVATATACALFGLECEIYMGAV 116 (365)
T ss_pred HHHHHhhCCceEEEEeccCCCccchh--HHHHHHHHHHHHHcCCCeEEEecCchH--HHHHHHHHHHHhCCCeEEEEcCC
Confidence 3444433 345676 99999999988 9999888875543 3577888889999 99999999999999999999976
Q ss_pred Cccccc---CCCCCCCCCCCccc-------c---------ccCCCC-ccccccc-----CccccCcEEecChHHHHHHHH
Q psy14801 220 SILAQP---QSLNDVPENQISYN-------E---------VEGIGY-SFAATTL-----DRNVIDQWGKCGDKDTFLMAR 274 (404)
Q Consensus 220 ~~~~~~---~~~~~~~~~~~~~~-------~---------~~~i~~-~~~~~~~-----~~~~~~~~~~v~d~e~~~~~~ 274 (404)
.+.... ..+....+...... . ...... .+...++ ...++..++.....|+++++.
T Consensus 117 ~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~ 196 (365)
T cd06446 117 DVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQIL 196 (365)
T ss_pred ccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHH
Confidence 421000 00111111100000 0 000000 0000000 000111122222344444433
Q ss_pred HHH--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc----------------------c--------
Q psy14801 275 RLI--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT----------------------K-------- 322 (404)
Q Consensus 275 ~l~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~----------------------~-------- 322 (404)
+.. .-+.+|++.|||++++|+.+.+++ .++.+|++|++.+...+.. .
T Consensus 197 ~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 275 (365)
T cd06446 197 EKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVP 275 (365)
T ss_pred HhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCC
Confidence 211 125699999999999999986665 3588999999965432210 0
Q ss_pred -----------ccchh-H-H----hhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEc
Q psy14801 323 -----------FISDE-W-M----IEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILA 372 (404)
Q Consensus 323 -----------~~~~~-~-~----~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~ 372 (404)
.+... | + .+..+.++|+++.++ .|||++++++++++++++++++||+|+|
T Consensus 276 ~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~~~~~~Vv~i~~ 355 (365)
T cd06446 276 PHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLS 355 (365)
T ss_pred cccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 00000 0 1 123345677666553 3999999999999988767889999999
Q ss_pred CCCcchhhcc
Q psy14801 373 DGVRNYLTKF 382 (404)
Q Consensus 373 D~g~rYl~~~ 382 (404)
|+|.||++|+
T Consensus 356 g~G~k~~~~~ 365 (365)
T cd06446 356 GRGDKDLQTV 365 (365)
T ss_pred CCCccccccC
Confidence 9999999874
No 108
>PRK07409 threonine synthase; Validated
Probab=99.70 E-value=1.1e-16 Score=155.40 Aligned_cols=233 Identities=12% Similarity=0.012 Sum_probs=143.1
Q ss_pred HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-cc
Q psy14801 145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-IL 222 (404)
Q Consensus 145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~~ 222 (404)
+.+..+..+|+ .|+.||++|.| +|.+..++..+.++-...||+++||| +|+++|+.++..|+++++|+|.+. +.
T Consensus 40 l~~~~g~~i~~K~E~~nptGSfK--dR~a~~~l~~a~~~g~~~iv~aSsGN--~g~alA~~a~~~G~~~~ivvP~~~~~~ 115 (353)
T PRK07409 40 LSELLGVEVYVKYEGLNPTGSFK--DRGMTMAVTKAKEEGAKAVICASTGN--TSASAAAYAARAGLKAFVLIPEGKIAL 115 (353)
T ss_pred hHHHhCCeEEEEecCCCCccchH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEEcCCCCch
Confidence 33333345666 99999999999 99999999888643234688889999 899999999999999999999873 32
Q ss_pred cccCCCCCCCCCCC--ccc--cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchhhHH
Q psy14801 223 AQPQSLNDVPENQI--SYN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSGTAM 292 (404)
Q Consensus 223 ~~~~~~~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg~tl 292 (404)
.....+........ ... ........+. ......+.+ ..+..+.+.+ .++.||+++. .|++..|||+++
T Consensus 116 ~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~-~~~~~~~~~-~~n~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~ 193 (353)
T PRK07409 116 GKLAQAVMYGAEIIQIDGNFDDALEIVRELA-EKYPVTLVN-SVNPYRIEGQKTAAFEIVDALGDAPDYHCIPVGNAGNI 193 (353)
T ss_pred hhHHHHHhcCCEEEEECCCHHHHHHHHHHHH-HhcCceecC-CCCchhhhhHHHHHHHHHHHhCCCCCEEEEeCCChHHH
Confidence 11111111111000 000 0000000000 000000111 1122222222 2345565554 388999999999
Q ss_pred HHHHHHHHhcC------CCCeEEEEecCCCCCc-----------cccccc----hh----H--Hhh---cCccCcHHHHH
Q psy14801 293 HVACQAAKSLR------PDQRCVVILADGVRNY-----------LTKFIS----DE----W--MIE---KGFLDEAEELE 342 (404)
Q Consensus 293 ag~~~~lk~~~------~~~~vv~v~~~~~~~~-----------~~~~~~----~~----~--~~~---~~~~~~~~~~~ 342 (404)
+|+.+.+++.. +..+++.|+|.+...+ +...+. .. + +.+ ..+.++|+++.
T Consensus 194 ~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~ 273 (353)
T PRK07409 194 TAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEIL 273 (353)
T ss_pred HHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHH
Confidence 99999888753 2478999998653211 111110 11 1 111 23567777766
Q ss_pred Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccC
Q psy14801 343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFI 383 (404)
Q Consensus 343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~ 383 (404)
++ .|||++++++++++++ +.++++||+|+||+|.||++++.
T Consensus 274 ~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~ 329 (353)
T PRK07409 274 EAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAI 329 (353)
T ss_pred HHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHH
Confidence 53 3899999999998876 66789999999999999999864
No 109
>PRK08198 threonine dehydratase; Provisional
Probab=99.69 E-value=1.2e-16 Score=158.02 Aligned_cols=245 Identities=13% Similarity=0.124 Sum_probs=148.4
Q ss_pred HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
+.++++..+..+|+ +|+.||++|.| +|.|..++.++.+ .....||++|+|| +|+++|+.++..|+++++|+|.+
T Consensus 28 ~~~ls~~~g~~i~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~ 103 (404)
T PRK08198 28 SRTLSELTGAEVYLKCENLQRTGSFK--IRGAYNKIASLSEEERARGVVAASAGN--HAQGVAYAASLLGIKATIVMPET 103 (404)
T ss_pred hhhHHHHhCCEEEEEECCCCCCCCCH--HHHHHHHHHhccHhhcCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 33455444456777 99999999999 9999999988763 2344678889999 99999999999999999999998
Q ss_pred CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhh
Q psy14801 220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGT 290 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~ 290 (404)
.+......+....+.... ...... ....+. ......+.+++.+....+-+ .++.||+++. .+|+..|||+
T Consensus 104 ~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~-~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG 182 (404)
T PRK08198 104 APLSKVKATRSYGAEVVLHGDVYDEALAKAQELA-EETGATFVHPFDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGG 182 (404)
T ss_pred CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHH-HhcCCEecCCCCCccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhH
Confidence 753221111111111000 000000 000000 00111233333333333333 3466777764 3889999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccchh----------H-----HhhcCccCcHHHHH
Q psy14801 291 AMHVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISDE----------W-----MIEKGFLDEAEELE 342 (404)
Q Consensus 291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~~----------~-----~~~~~~~~~~~~~~ 342 (404)
+++|+.+++|+.+|+.+|++|+|.+...+. ...+.+. + ..|..+.++++++.
T Consensus 183 ~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~ 262 (404)
T PRK08198 183 LISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIA 262 (404)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHH
Confidence 999999999999999999999996643210 0011111 1 22344567777665
Q ss_pred Hhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc--chhhccCCHHHHHHcC
Q psy14801 343 EMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR--NYLTKFISDEWMIEKG 392 (404)
Q Consensus 343 ~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~--rYl~~~~~~~w~~~~~ 392 (404)
.++ |+|++++++++. +.+.++++||+|+|++.. +++.++++.....+..
T Consensus 263 ~a~~~l~~~~g~~~e~sga~~lAal~~~-~~~~~~~~vv~vl~ggn~~~~~l~~ii~~gl~~~gr 326 (404)
T PRK08198 263 RAILLLLERAKLVVEGAGAVSVAALLSG-KLDVKGKKVVAVLSGGNIDVLLLSRVIERGLVAAGR 326 (404)
T ss_pred HHHHHHHHhcCeEEehHHHHHHHHHHhc-hhhcCCCeEEEEECCCCCCHHHHHHHHHhhhhhcCC
Confidence 532 544555555544 455678999999998544 4555555554444333
No 110
>PLN02618 tryptophan synthase, beta chain
Probab=99.68 E-value=2.1e-16 Score=154.03 Aligned_cols=228 Identities=13% Similarity=0.044 Sum_probs=141.8
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhC-CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--- 225 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--- 225 (404)
..+|+ +|+.||++|.| +|.+...+..+. ..++.+|+++|+|| .|+++|+.++..|+++++++|+.......
T Consensus 87 ~~IylK~E~lnptGS~K--~R~a~~~~l~A~~~g~~~vIaesgaGN--hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv 162 (410)
T PLN02618 87 PEIYLKREDLNHTGAHK--INNAVAQALLAKRLGKKRIIAETGAGQ--HGVATATVCARFGLECIVYMGAQDMERQALNV 162 (410)
T ss_pred CEEEEEeCCCCCccchH--HHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhH
Confidence 45777 99999999988 886665544333 23688999999999 99999999999999999999986421000
Q ss_pred CCCCCCCCCCCcc-----cc-----------ccCCCC-ccccccc-----CccccCcEEecChHHHHHHHHHHH--HhcC
Q psy14801 226 QSLNDVPENQISY-----NE-----------VEGIGY-SFAATTL-----DRNVIDQWGKCGDKDTFLMARRLI--KSEG 281 (404)
Q Consensus 226 ~~~~~~~~~~~~~-----~~-----------~~~i~~-~~~~~~~-----~~~~~~~~~~v~d~e~~~~~~~l~--~~~g 281 (404)
..+....+..... .. ...+.. .++..+. ...++.++.++...|+.+++.+-. .-+.
T Consensus 163 ~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~ 242 (410)
T PLN02618 163 FRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242 (410)
T ss_pred HHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCE
Confidence 0011111110000 00 000000 0000000 001112333334445543332111 1234
Q ss_pred cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC----------------------cc--c----------------
Q psy14801 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN----------------------YL--T---------------- 321 (404)
Q Consensus 282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~----------------------~~--~---------------- 321 (404)
+|++.|||++++|+.+.+++ +++.+++.|++.+... |+ +
T Consensus 243 VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~ 321 (410)
T PLN02618 243 LVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLD 321 (410)
T ss_pred EEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhc
Confidence 99999999999999988865 6889999999976310 00 0
Q ss_pred -cccch--hHHhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 322 -KFISD--EWMIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 322 -~~~~~--~~~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
+..+. .++.+ ....++|+++..+ .|||++++++++++++++++++||++++|+|+||+++
T Consensus 322 ~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~ 401 (410)
T PLN02618 322 YPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNT 401 (410)
T ss_pred CCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHH
Confidence 01111 11222 2245777777663 4999999999999999888999999999999999999
Q ss_pred cC
Q psy14801 382 FI 383 (404)
Q Consensus 382 ~~ 383 (404)
++
T Consensus 402 v~ 403 (410)
T PLN02618 402 AI 403 (410)
T ss_pred HH
Confidence 75
No 111
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.67 E-value=3.6e-16 Score=152.92 Aligned_cols=236 Identities=13% Similarity=0.035 Sum_probs=144.6
Q ss_pred HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
+.++.+..+ ..+|+ +|+.||++|.| +|.+..++..+.+ .++.+|+++|||| .|+++|+.++..|+++++|+|+
T Consensus 56 ~~~l~~~~g~~~iy~K~E~~nptGS~K--~R~a~~~~~~a~~~g~~~vi~e~ssGN--~G~alA~~a~~~Gl~~~Iv~p~ 131 (385)
T TIGR00263 56 APNLTEALGGAKIYLKREDLNHTGAHK--INNALGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLDCEVYMGA 131 (385)
T ss_pred hHHHHHHhCCCeEEEEeCCCCCCccch--HHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCCEEEEecC
Confidence 344554443 45777 99999999988 9999888776653 3678899999999 9999999999999999999997
Q ss_pred CCcccccC---CCCCCCCCCCcc-----ccccCC--CCccccccc-Ccccc-C-------------cEEecChHHHHHHH
Q psy14801 219 GSILAQPQ---SLNDVPENQISY-----NEVEGI--GYSFAATTL-DRNVI-D-------------QWGKCGDKDTFLMA 273 (404)
Q Consensus 219 ~~~~~~~~---~~~~~~~~~~~~-----~~~~~i--~~~~~~~~~-~~~~~-~-------------~~~~v~d~e~~~~~ 273 (404)
........ .+....+..... .....+ ....+..+. +..+. . .+..+...|++++.
T Consensus 132 ~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql 211 (385)
T TIGR00263 132 EDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQI 211 (385)
T ss_pred CcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHH
Confidence 53211000 011111110000 000000 000000011 00011 1 11122233444433
Q ss_pred HHH-HH-hcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------Ccccc----------------------
Q psy14801 274 RRL-IK-SEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------NYLTK---------------------- 322 (404)
Q Consensus 274 ~~l-~~-~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~~---------------------- 322 (404)
.+. .+ -+.+|+..|||++++|+.+.+.+ .|+.+|+.|++.+.. ..+..
T Consensus 212 ~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00263 212 LEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQIL 290 (385)
T ss_pred HhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCccc
Confidence 221 11 24589999999999999876544 588999999997631 00000
Q ss_pred ------------ccch---hHHh---hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801 323 ------------FISD---EWMI---EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL 371 (404)
Q Consensus 323 ------------~~~~---~~~~---~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~ 371 (404)
..+. .+.. ++.+.++|++++.+ .|||++++++++++++++++++||+++
T Consensus 291 ~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~~~~Vv~i~ 370 (385)
T TIGR00263 291 EAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNL 370 (385)
T ss_pred ccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 0000 0111 12345778777663 499999999999998887899999999
Q ss_pred cCCCcchhhcc
Q psy14801 372 ADGVRNYLTKF 382 (404)
Q Consensus 372 ~D~g~rYl~~~ 382 (404)
||+|.+|++++
T Consensus 371 ~g~G~~d~~~~ 381 (385)
T TIGR00263 371 SGRGDKDIFTI 381 (385)
T ss_pred CCCCcCCHHHH
Confidence 99999999975
No 112
>PRK08197 threonine synthase; Validated
Probab=99.67 E-value=4.5e-16 Score=153.11 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=144.1
Q ss_pred HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
..++.+..+ ..+|+ +|+.||++|.| ||.+..++.++.+.-...|+++++|| +|+++|+.++..|+++++|+|.+
T Consensus 85 ~~~l~~~~G~~~l~~K~E~~nPtGSfK--dRga~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~v~vp~~ 160 (394)
T PRK08197 85 LPRLGKALGIGRLWVKDEGLNPTGSFK--ARGLAVGVSRAKELGVKHLAMPTNGN--AGAAWAAYAARAGIRATIFMPAD 160 (394)
T ss_pred hHHHHHHhCCCcEEEEeCCCCCCcCcH--HhHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEEcCC
Confidence 344554443 24666 99999999999 99999998887643234677788999 99999999999999999999988
Q ss_pred CcccccCCCCCCCCCCCc---c-----ccccCC---CCcccccccCccccCcEEecChHHH-HHHHHHHHHh------cC
Q psy14801 220 SILAQPQSLNDVPENQIS---Y-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDT-FLMARRLIKS------EG 281 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~---~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~-~~~~~~l~~~------~g 281 (404)
.+......+....+.... . ..+... ...+...++ .+....|. ...+.||++| +.
T Consensus 161 ~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~--------~np~~ieG~~t~a~Ei~eQl~~~~pD~ 232 (394)
T PRK08197 161 APEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTL--------KEPYRIEGKKTMGLELAEQLGWRLPDV 232 (394)
T ss_pred CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCC--------CCccchhcHHHHHHHHHHHcCCCCCCE
Confidence 753221111111111000 0 000000 001111111 11111112 1234455554 34
Q ss_pred cEeccchhhHHHHHHHHHHhc-------CCCCeEEEEecCCCCCcc---------------ccc----------cchhHH
Q psy14801 282 LLVGGSSGTAMHVACQAAKSL-------RPDQRCVVILADGVRNYL---------------TKF----------ISDEWM 329 (404)
Q Consensus 282 i~~~~~tg~tlag~~~~lk~~-------~~~~~vv~v~~~~~~~~~---------------~~~----------~~~~~~ 329 (404)
+|+..|+|++++|+.+.++++ ++..++++|++.+...+. ... ..+...
T Consensus 233 vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~ 312 (394)
T PRK08197 233 ILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLV 312 (394)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHH
Confidence 888889999999999999985 377899999996542110 000 111111
Q ss_pred hh-------cCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801 330 IE-------KGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF 382 (404)
Q Consensus 330 ~~-------~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~ 382 (404)
.+ ..+.++|+++.++ .|||++++++++++++ +.++++||++++|+|.||++++
T Consensus 313 ~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~ 387 (394)
T PRK08197 313 LDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDTV 387 (394)
T ss_pred HHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhhh
Confidence 11 1245777766553 3999999999999876 5578999999999999999874
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=99.67 E-value=3.4e-16 Score=154.46 Aligned_cols=243 Identities=12% Similarity=0.092 Sum_probs=149.9
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.+.+..+..+|+ +|+.||.+|.| +|.|+.++.++... ... ||++++|| +|.++|+.++..|+++++|+|.+.
T Consensus 33 ~ls~~~g~~v~~K~E~~nptGSfK--~Rga~~~i~~~~~~~~~~g-vv~aSsGN--~g~a~A~aa~~~G~~~~ivmp~~~ 107 (406)
T PRK06382 33 TFGDEYGGDIYFKLENFQKTGSFK--SRGAVFKFSKLSEDELRNG-VITASAGN--HAQGVAYAASINGIDAKIVMPEYT 107 (406)
T ss_pred hhHHHhCCEEEEEecCCCCCCCCH--HHHHHHHHHhcchhccCCe-EEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCC
Confidence 444444456776 99999999999 99999998776532 122 78899999 999999999999999999999987
Q ss_pred cccccCCCCCCCCCCC--cc--ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801 221 ILAQPQSLNDVPENQI--SY--NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA 291 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t 291 (404)
+......+........ .. .......... ....+..+++++.+....+-+ ..+.||+++. .+++..|||++
T Consensus 108 ~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~l-a~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~ 186 (406)
T PRK06382 108 IPQKVNAVEAYGAHVILTGRDYDEAHRYADKI-AMDENRTFIEAFNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGL 186 (406)
T ss_pred HHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHhcCCEecCccCChHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHH
Confidence 5322111111111100 00 0000000000 000111223333222222222 3356777664 48899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------cccccc-----h-h--H---HhhcCccCcHHHHHH
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFIS-----D-E--W---MIEKGFLDEAEELEE 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~~-----~-~--~---~~~~~~~~~~~~~~~ 343 (404)
++|+.+++|+.+|+.+|++|+|.+...+ +..++. + . + ..+..+.++|+++..
T Consensus 187 ~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~ 266 (406)
T PRK06382 187 ISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSK 266 (406)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHH
Confidence 9999999999999999999999764321 000110 0 0 1 123345577766655
Q ss_pred hc------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc---chhhccCCHHHHHHcCC
Q psy14801 344 MI------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR---NYLTKFISDEWMIEKGF 393 (404)
Q Consensus 344 g~------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~---rYl~~~~~~~w~~~~~~ 393 (404)
++ .||++..||+...+..+++++||+|+|+ |. +|+++++++.|+.+++.
T Consensus 267 a~~~l~~~~gi~~epsga~~laal~~~~~~~~~~~Vv~i~sG-Gn~d~~~~~~~~~~~~~~~~~~ 330 (406)
T PRK06382 267 AIYKLFEREKIVAEPSGAVGLAAIMEGKVDVKGKKVAIVVSG-GNINPLLMSKIIYKELENLGQL 330 (406)
T ss_pred HHHHHHHHcCceechHHHHHHHHHHhccccCCCCEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCE
Confidence 32 3355555566544322357899999985 66 69999999999988775
No 114
>PLN02970 serine racemase
Probab=99.66 E-value=1.7e-16 Score=152.37 Aligned_cols=231 Identities=11% Similarity=0.094 Sum_probs=138.7
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
++.+..+..+|+ +|+.||++|.| +|.|..++.++.. .....||++++|| +|+++|+.++..|+++++|+|++.+
T Consensus 35 ~l~~~~g~~i~~K~E~~nptGSfK--dRga~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~ 110 (328)
T PLN02970 35 SLDALAGRSLFFKCECFQKGGAFK--FRGACNAIFSLSDDQAEKGVVTHSSGN--HAAALALAAKLRGIPAYIVVPKNAP 110 (328)
T ss_pred hhHHhhCCeEEEEecCCCCCCCcH--HHHHHHHHHHhhHhhcCCeEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCCC
Confidence 344333345666 99999999999 9999999887652 2233477899999 9999999999999999999999875
Q ss_pred ccccCCCCCCCCCCCc-c---ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHh----cCcEeccchhhHH
Q psy14801 222 LAQPQSLNDVPENQIS-Y---NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS----EGLLVGGSSGTAM 292 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~----~gi~~~~~tg~tl 292 (404)
......+......... . .........+ .......+.+++.+....+-+ .++.||+++ +.+|++.|||+++
T Consensus 111 ~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l-a~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~ 189 (328)
T PLN02970 111 ACKVDAVIRYGGIITWCEPTVESREAVAARV-QQETGAVLIHPYNDGRVISGQGTIALEFLEQVPELDVIIVPISGGGLI 189 (328)
T ss_pred HHHHHHHHhcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEeCCCCCcchhhehHHHHHHHHHhccCCCEEEEeeCchHHH
Confidence 3221111111111000 0 0000000000 000011122332222222222 234455544 4589999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccch---------hH-----HhhcCccCcHHHHHHh-
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISD---------EW-----MIEKGFLDEAEELEEM- 344 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~---------~~-----~~~~~~~~~~~~~~~g- 344 (404)
+|+.+.+|+.+|+.+|++|+|.+...+. .+.+.+ .| ..+..+.++|++++.+
T Consensus 190 ~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 269 (328)
T PLN02970 190 SGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAM 269 (328)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHH
Confidence 9999999999999999999997643110 000111 11 1234456777777663
Q ss_pred ------------ccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCcchhh
Q psy14801 345 ------------IHSGTAMHVACQAAKSL----RPDQRCVVILADGVRNYLT 380 (404)
Q Consensus 345 ------------~SsGa~~~~a~~~~~~~----~~~~~iv~i~~D~g~rYl~ 380 (404)
.|+|++++++++.+.+. +.+++||+|+|- |..=++
T Consensus 270 ~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~ 320 (328)
T PLN02970 270 KLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLG 320 (328)
T ss_pred HHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHH
Confidence 39999999988754431 224788888887 554333
No 115
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.66 E-value=4.9e-16 Score=148.27 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=139.0
Q ss_pred CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC---cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK---VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~---~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
+..+|+ +|+.||++|.| +|.+..++.++.++ +...||++|+|| +|.++|+.++..|+++++|+|...+....
T Consensus 15 g~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k~ 90 (316)
T cd06448 15 GCNVFLKLENLQPSGSFK--IRGIGHLCQKSAKQGLNECVHVVCSSGGN--AGLAAAYAARKLGVPCTIVVPESTKPRVV 90 (316)
T ss_pred CCeEEEEeccCCCcCChH--HHHHHHHHHHHHHhhcccCCeEEEeCCcH--HHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 345666 89999999999 99999999887643 356788999999 99999999999999999999998743211
Q ss_pred -------CCCCCCCCCCCc--cccccCC---C-Cccccccc-CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801 226 -------QSLNDVPENQIS--YNEVEGI---G-YSFAATTL-DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA 291 (404)
Q Consensus 226 -------~~~~~~~~~~~~--~~~~~~i---~-~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t 291 (404)
.++...+..... ......+ . ..++..++ +..+...+ .....|+++++...-.-+.+++..|||++
T Consensus 91 ~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~-~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~ 169 (316)
T cd06448 91 EKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGH-SSMVDEIAQQLQSQEKVDAIVCSVGGGGL 169 (316)
T ss_pred HHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccc-cHHHHHHHHHccccCCCCEEEEEeCchHH
Confidence 111111100000 0000000 0 11222222 11222222 33455555544320012568999999999
Q ss_pred HHHHHHHHHhcC-CCCeEEEEecCCCCCcc--------------c---cccchh------H--H---hhcCccCcHHHHH
Q psy14801 292 MHVACQAAKSLR-PDQRCVVILADGVRNYL--------------T---KFISDE------W--M---IEKGFLDEAEELE 342 (404)
Q Consensus 292 lag~~~~lk~~~-~~~~vv~v~~~~~~~~~--------------~---~~~~~~------~--~---~~~~~~~~~~~~~ 342 (404)
++|+.+.+++.+ ++.+|++|+|.+...+. . .+++.. | + .+..+.++|++++
T Consensus 170 ~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~ 249 (316)
T cd06448 170 LNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAV 249 (316)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHH
Confidence 999999999986 88999999996642110 0 011111 1 1 1223457777765
Q ss_pred H-------------hccchhHHHHHHHHH-----H--hcCCCCeEEEEEcCCCc
Q psy14801 343 E-------------MIHSGTAMHVACQAA-----K--SLRPDQRCVVILADGVR 376 (404)
Q Consensus 343 ~-------------g~SsGa~~~~a~~~~-----~--~~~~~~~iv~i~~D~g~ 376 (404)
. +.|||++++|+++.. + .+.++++||+|+||+..
T Consensus 250 ~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~ 303 (316)
T cd06448 250 QACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSN 303 (316)
T ss_pred HHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCC
Confidence 5 338999999998532 1 35688999999999764
No 116
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.66 E-value=4e-16 Score=149.59 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=141.2
Q ss_pred HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc
Q psy14801 145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL 222 (404)
Q Consensus 145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~ 222 (404)
+.+..+..+|+ +|+.||++|.| +|.|..++.++..+ ....||++|+|| +|+++|+.++..|+++++|+|.+.+.
T Consensus 33 l~~~~g~~i~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~vvvp~~~~~ 108 (321)
T PRK07048 33 ADARTGAQVFFKCENFQRMGAFK--FRGAYNALSQFSPEQRRAGVVTFSSGN--HAQAIALSARLLGIPATIVMPQDAPA 108 (321)
T ss_pred hHHhcCCeEEEEeccCCCCCCee--HHHHHHHHHhhhHhhcCCcEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 33333345666 99999999999 99999999876521 223478889999 99999999999999999999998753
Q ss_pred cccCCCCCCCCCCC---cc-----ccccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801 223 AQPQSLNDVPENQI---SY-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA 291 (404)
Q Consensus 223 ~~~~~~~~~~~~~~---~~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t 291 (404)
.....+........ .. .....+ ...++..++++...-.++.....|++++.. +-+.+++..|||++
T Consensus 109 ~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~---~~D~vv~~vGtGG~ 185 (321)
T PRK07048 109 AKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG---PLDALFVCLGGGGL 185 (321)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC---CCCEEEEecChhHH
Confidence 22111111111100 00 000000 011112222111111222233344443332 12459999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCc----c--------c----------cccchh-H-----HhhcCccCcHHHHHH
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNY----L--------T----------KFISDE-W-----MIEKGFLDEAEELEE 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~----~--------~----------~~~~~~-~-----~~~~~~~~~~~~~~~ 343 (404)
++|+.+.+|+..++.+|++|+|.+...+ . . +.++.. | ..|..+.++|++++.
T Consensus 186 ~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~ 265 (321)
T PRK07048 186 LSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVD 265 (321)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHH
Confidence 9999999999999999999999764210 0 0 011111 1 233445677777655
Q ss_pred h-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 344 M-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 344 g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
+ .|+|+++++++++.++ .++++||+|++. |...++.
T Consensus 266 a~~~l~~~~gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tG-Gn~~~~~ 314 (321)
T PRK07048 266 AMRFFAERMKIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISG-GNVDLAR 314 (321)
T ss_pred HHHHHHHhCCceeccHHHHHHHHHHhCchh-cCCCeEEEEeCC-CCCCHHH
Confidence 3 3888999988887665 468899999995 7776664
No 117
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.66 E-value=6e-16 Score=148.77 Aligned_cols=221 Identities=14% Similarity=0.043 Sum_probs=138.1
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~ 229 (404)
..+|+ +|+.||.+|.| +|.+..++.++.++-...||++++|| +|+++|+.++..|+++++|+|.+.+......+.
T Consensus 38 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~vv~~SsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~ 113 (324)
T cd01563 38 KNLYVKDEGLNPTGSFK--DRGMTVAVSKAKELGVKAVACASTGN--TSASLAAYAARAGIKCVVFLPAGKALGKLAQAL 113 (324)
T ss_pred CceEEEecCCCCcccHH--HhhHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHH
Confidence 34666 99999999999 99999999988754344677889999 999999999999999999999887432111111
Q ss_pred CCCCCCC---ccc-----cccCCC--CcccccccC-ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH
Q psy14801 230 DVPENQI---SYN-----EVEGIG--YSFAATTLD-RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298 (404)
Q Consensus 230 ~~~~~~~---~~~-----~~~~i~--~~~~~~~~~-~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~ 298 (404)
....... ... ....+. ..++..+++ ..+. ..+.....|+++++.. -.-+.+|+..|||++++|+...
T Consensus 114 ~~GA~Vi~~~~~~~~~~~~a~~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~-~~~d~vv~~vGtGg~~~G~~~~ 191 (324)
T cd01563 114 AYGATVLAVEGNFDDALRLVRELAEENWIYLSNSLNPYRL-EGQKTIAFEIAEQLGW-EVPDYVVVPVGNGGNITAIWKG 191 (324)
T ss_pred HcCCEEEEECCcHHHHHHHHHHHHHhcCeeccCCCCccee-cchhhhHHHHHHHcCC-CCCCEEEEecCCcHHHHHHHHH
Confidence 1111000 000 000000 011111111 1111 1122334444443321 0124589999999999999999
Q ss_pred HHhcC------CCCeEEEEecCCCCCcc-------------------ccccc-------hh---HHh---hcCccCcHHH
Q psy14801 299 AKSLR------PDQRCVVILADGVRNYL-------------------TKFIS-------DE---WMI---EKGFLDEAEE 340 (404)
Q Consensus 299 lk~~~------~~~~vv~v~~~~~~~~~-------------------~~~~~-------~~---~~~---~~~~~~~~~~ 340 (404)
+++.. ++.+|++|++.+..... ...++ .. ++. +..+.++|++
T Consensus 192 ~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e 271 (324)
T cd01563 192 FKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEE 271 (324)
T ss_pred HHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHH
Confidence 98753 57899999986542110 00110 01 111 2335567777
Q ss_pred HHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcc
Q psy14801 341 LEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRN 377 (404)
Q Consensus 341 ~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~r 377 (404)
+..+ .|||++++++++++++ +.++++||+|+||+|.|
T Consensus 272 ~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~ 323 (324)
T cd01563 272 ILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred HHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence 6653 3999999999999876 45789999999999986
No 118
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.65 E-value=8.7e-16 Score=149.65 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=147.5
Q ss_pred HHHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
+.++.+.. +..+|+ +|..||++|.| +|.+..++..+.+ ..+.+|+++|+|| .|+++|+.++..|+++++++|+
T Consensus 68 ~~~Ls~~~Gg~~IylK~EdlnptGS~K--~r~al~~~l~A~~~G~~~vI~etgsGn--hG~A~A~aaa~~Gl~~~I~m~~ 143 (402)
T PRK13028 68 AKRLSEELGGAQIYLKREDLNHTGAHK--INNCLGQALLAKRMGKKRLIAETGAGQ--HGVATATAAALFGLECEIYMGE 143 (402)
T ss_pred hHHhHhhcCCCeEEEEECCCCCCcchH--HHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCCEEEEECC
Confidence 44555544 346777 99999999988 8988877666542 2567899999999 9999999999999999999998
Q ss_pred CCccccc---CCCCCCCCCCCc-----ccc-----------ccCCCCc-cccccc-----CccccCcEEecChHHHHHHH
Q psy14801 219 GSILAQP---QSLNDVPENQIS-----YNE-----------VEGIGYS-FAATTL-----DRNVIDQWGKCGDKDTFLMA 273 (404)
Q Consensus 219 ~~~~~~~---~~~~~~~~~~~~-----~~~-----------~~~i~~~-~~~~~~-----~~~~~~~~~~v~d~e~~~~~ 273 (404)
..+.... ..+....+.... ... ....... ++..+. ...++.++..+...|+.+++
T Consensus 144 ~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~ 223 (402)
T PRK13028 144 VDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQF 223 (402)
T ss_pred CcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHH
Confidence 6422100 001111111000 000 0000000 000000 00111223333444554433
Q ss_pred HHH-H-HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC--------CCCcc-----------------------
Q psy14801 274 RRL-I-KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG--------VRNYL----------------------- 320 (404)
Q Consensus 274 ~~l-~-~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~--------~~~~~----------------------- 320 (404)
.+. . .-+.+|++.|||++++|+.+.+++ .++.+|+.|++.+ ...+.
T Consensus 224 ~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~ 302 (402)
T PRK13028 224 LEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPA 302 (402)
T ss_pred HHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcC
Confidence 211 1 123499999999999999999876 4889999999976 11110
Q ss_pred -----c-----cccchhH--Hh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801 321 -----T-----KFISDEW--MI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL 371 (404)
Q Consensus 321 -----~-----~~~~~~~--~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~ 371 (404)
. +..+... +. +....++|+++..+ .|||+++++++++++++.++++||+++
T Consensus 303 ~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~~~~~VVv~l 382 (402)
T PRK13028 303 PVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNL 382 (402)
T ss_pred CccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcCCCCeEEEEE
Confidence 0 0011110 11 22345778777663 399999999999999888899999999
Q ss_pred cCCCcchhhccC
Q psy14801 372 ADGVRNYLTKFI 383 (404)
Q Consensus 372 ~D~g~rYl~~~~ 383 (404)
||+|+||++++.
T Consensus 383 sG~G~kd~~~~~ 394 (402)
T PRK13028 383 SGRGDKDIDYVA 394 (402)
T ss_pred CCCCccCHHHHH
Confidence 999999999875
No 119
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.65 E-value=7.2e-16 Score=142.28 Aligned_cols=214 Identities=16% Similarity=0.201 Sum_probs=132.0
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC---cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK---VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ 226 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~---~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~ 226 (404)
..+|+ +|+.||.+|.| +|.+..++.++... ++.+|++++||| +|.++|+.++..+++++++.|.+.+.....
T Consensus 15 ~~l~~K~e~~~ptgS~K--~R~a~~~l~~a~~~g~~~~~~vv~~ssGN--~g~alA~~a~~~g~~~~v~~p~~~~~~~~~ 90 (244)
T cd00640 15 ANIYLKLEFLNPTGSFK--DRGALNLILLAEEEGKLPKGVIIESTGGN--TGIALAAAAARLGLKCTIVMPEGASPEKVA 90 (244)
T ss_pred CEEEEEecccCCcCCcH--HHHHHHHHHHHHHcCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 45666 89999999999 99999999887633 367889999999 999999999999999999999887432111
Q ss_pred CCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh------cCcEeccchhhHHHHH
Q psy14801 227 SLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS------EGLLVGGSSGTAMHVA 295 (404)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~------~gi~~~~~tg~tlag~ 295 (404)
.+......... ...... ....+.....+..+.+++.+..+.+.+ ..+.|+.++ +.+++..|||++++|+
T Consensus 91 ~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~ 170 (244)
T cd00640 91 QMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGI 170 (244)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHH
Confidence 11111110000 000000 000000000111233333222222222 223444443 4588888999999999
Q ss_pred HHHHHhcCCCCeEEEEecCCCCCccccccchh-HHhhcCccCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801 296 CQAAKSLRPDQRCVVILADGVRNYLTKFISDE-WMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADG 374 (404)
Q Consensus 296 ~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~ 374 (404)
.+.+++..|..+|++|++ ......|+ .+..-......+.++.+.|||++++++.+++++.+++++||+++||+
T Consensus 171 ~~~~~~~~~~~~ii~v~~------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~ 244 (244)
T cd00640 171 ARALKELLPNVKVIGVEP------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHhCCCCEEEEEee------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999999999999999 00011111 11000001111223335599999999999998876789999999985
No 120
>PRK06815 hypothetical protein; Provisional
Probab=99.65 E-value=5.2e-16 Score=148.44 Aligned_cols=222 Identities=13% Similarity=0.110 Sum_probs=139.6
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
.+.+..+..+|+ +|+.||++|.| +|.+..+++++..+ ...-||++++|| +|.++|+.++..|+++++++|...+
T Consensus 28 ~l~~~~g~~i~~K~E~~nptgS~K--dR~a~~~~~~l~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~ 103 (317)
T PRK06815 28 LLSQHTGCEVYLKCEHLQHTGSFK--FRGASNKLRLLNEAQRQQGVITASSGN--HGQGVALAAKLAGIPVTVYAPEQAS 103 (317)
T ss_pred hHHHhhCCeEEEEecCCCCCCCcH--HHHHHHHHHhcchhhcCceEEEECCCh--HHHHHHHHHHHhCCCEEEEECCCCC
Confidence 344433345666 99999999999 99999999876522 222367789999 9999999999999999999998875
Q ss_pred ccccCCCCCCCCCCCc---cc-----cccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHh----cCcEecc
Q psy14801 222 LAQPQSLNDVPENQIS---YN-----EVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS----EGLLVGG 286 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~---~~-----~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~----~gi~~~~ 286 (404)
......+......... .. ....+ ...++..+++..+.-.++.. .+.||+++ +.+++..
T Consensus 104 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t-------~a~Ei~~q~~~~d~vv~~v 176 (317)
T PRK06815 104 AIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGT-------IGMELVEQQPDLDAVFVAV 176 (317)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhH-------HHHHHHHhcCCCCEEEEEC
Confidence 3211111111111000 00 00000 00111111111111111222 34444444 4589999
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------ccccc----c-hh-------HHhhcCccCc
Q psy14801 287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFI----S-DE-------WMIEKGFLDE 337 (404)
Q Consensus 287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~----~-~~-------~~~~~~~~~~ 337 (404)
|||++++|+.+++++..++.+|++|+|.+...+ +...+ . +. ...+..+.++
T Consensus 177 G~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~ 256 (317)
T PRK06815 177 GGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVS 256 (317)
T ss_pred cHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEEC
Confidence 999999999999999999999999999764321 11111 0 00 1123445677
Q ss_pred HHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcc
Q psy14801 338 AEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRN 377 (404)
Q Consensus 338 ~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~r 377 (404)
|+++.++ .|||+++++++++++++ ++++||+|+||+|-+
T Consensus 257 d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 257 EEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCGKNIV 308 (317)
T ss_pred HHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECCCCCC
Confidence 7776653 38999999999988774 688999999998864
No 121
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.64 E-value=5.4e-16 Score=147.82 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=140.9
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.++.+..+..+|+ +|+.||++|.| +|.+..++.++.+. +...||+++||| +|.++|+.++..|+++++|.|.+.
T Consensus 24 ~~l~~~~g~~i~~K~E~~nptgS~K--dr~a~~~l~~~~~~~~~~~iv~~ssGN--~g~alA~~a~~~G~~~~ivvp~~~ 99 (304)
T cd01562 24 PTLSELLGAEVYLKCENLQKTGSFK--IRGAYNKLLSLSEEERAKGVVAASAGN--HAQGVAYAAKLLGIPATIVMPETA 99 (304)
T ss_pred hhhHHHhCCeEEEEeccCCCcCCcH--HHhHHHHHHhcCHhhcCCcEEEECCCH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence 3444444446777 99999999999 99999999988742 234578889999 999999999999999999999887
Q ss_pred cccccCCCCCCCCCCC---cc-ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801 221 ILAQPQSLNDVPENQI---SY-NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA 291 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t 291 (404)
+......+........ .. .........+ .......+.+++.+....+.+ .++.||+++. .+|+..|||++
T Consensus 100 ~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~l-a~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt 178 (304)
T cd01562 100 PAAKVDATRAYGAEVVLYGEDFDEAEAKAREL-AEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGL 178 (304)
T ss_pred CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEeCCCCCcchhccHHHHHHHHHHhcCCCCEEEEecCHHHH
Confidence 4321111111111000 00 0000000000 000011122332222222222 2345555553 48899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCccc-----------------cccc----h--hH-----HhhcCccCcHHHHHH
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNYLT-----------------KFIS----D--EW-----MIEKGFLDEAEELEE 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~~-----------------~~~~----~--~~-----~~~~~~~~~~~~~~~ 343 (404)
++|+.+.+|+..++.+|+++++.+...+.. ..++ . .| ..+..+.++|++++.
T Consensus 179 ~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~ 258 (304)
T cd01562 179 IAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAA 258 (304)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHH
Confidence 999999999988999999999965422100 0110 0 01 122334566666655
Q ss_pred -------------hccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801 344 -------------MIHSGTAMHVACQAAKSLRPDQRCVVILADGV 375 (404)
Q Consensus 344 -------------g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g 375 (404)
+.|||++++++++++++. ++++||+|+|++.
T Consensus 259 a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG~ 302 (304)
T cd01562 259 AMLLLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGGN 302 (304)
T ss_pred HHHHHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCCC
Confidence 348999999999998875 7899999999975
No 122
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.63 E-value=6.8e-16 Score=151.53 Aligned_cols=242 Identities=14% Similarity=0.147 Sum_probs=144.0
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+++..+..+|+ .|+.||++|.| +|.|+.++.++..+ ....||++++|| +|+++|+.++..|+++++|+|...
T Consensus 7 ~~ls~~~g~~i~~K~E~~~ptgS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~ 82 (380)
T TIGR01127 7 TTLSDITGSEVYLKLENLQKTGSFK--IRGALNKIANLSEDQRQRGVVAASAGN--HAQGVAYAAKKFGIKAVIVMPESA 82 (380)
T ss_pred HHHHHHhCCeEEEEecCCCCCCCcH--HHHHHHHHHhcchhccCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCC
Confidence 3455544456776 99999999999 99999999988743 223588999999 999999999999999999999988
Q ss_pred cccccCCCCCCCCCCCc-cc---cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801 221 ILAQPQSLNDVPENQIS-YN---EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA 291 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t 291 (404)
+......+......... .. ........+ .......+++++.+....+-. ..+.|++++. .+++..|||++
T Consensus 83 ~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~-~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~ 161 (380)
T TIGR01127 83 PPSKVKATKSYGAEVILHGDDYDEAYAFATSL-AEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGL 161 (380)
T ss_pred cHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCEecCCCCChhhhhhhHHHHHHHHHhCCCCCEEEEEeChHHH
Confidence 53221111111111000 00 000000000 000001111222111111111 2345555554 48899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccchh----------H-----HhhcCccCcHHHHHH
Q psy14801 292 MHVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISDE----------W-----MIEKGFLDEAEELEE 343 (404)
Q Consensus 292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~~----------~-----~~~~~~~~~~~~~~~ 343 (404)
++|+..++|+..|+.+|++|+|.+...+. ...+.+. + ..|..+.++|+++..
T Consensus 162 ~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~ 241 (380)
T TIGR01127 162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIAN 241 (380)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHH
Confidence 99999999999999999999997643211 0111110 0 223445677776655
Q ss_pred hc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHH
Q psy14801 344 MI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIE 390 (404)
Q Consensus 344 g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~ 390 (404)
++ |++++++++++.... .++++||+|+|++. ...++++.+..+..+
T Consensus 242 a~~~l~~~~gi~~e~s~a~~laa~~~~~~~-~~~~~vv~i~sGGn~d~d~l~~vi~~gl~~~ 302 (380)
T TIGR01127 242 AIYLLLERHKILAEGAGAAGVAALLEQKVD-VKGKKIAVVLSGGNIDLNLLNKIIEKGLVKS 302 (380)
T ss_pred HHHHHHHhcCeEechHHHHHHHHHHhCccc-cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 32 666777766654322 36889999999843 245555555544333
No 123
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.63 E-value=2.9e-15 Score=145.78 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=148.0
Q ss_pred HHHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
+.++.+.. +..+|+ +|..||++|.| +|.+..++..+.+ ..+.+|+++|+|| .|+++|+.++..|+++++++|+
T Consensus 64 ~~~Ls~~~gg~~IylK~EdlnptGS~K--~r~al~~~l~A~~~Gk~~vIaetgaGn--hG~A~A~~aa~~Gl~c~I~mp~ 139 (397)
T PRK04346 64 AERLSEHLGGAKIYLKREDLNHTGAHK--INNVLGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLECVIYMGA 139 (397)
T ss_pred hHHHHHHcCCCeEEEEECCCCCccchH--HHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCcEEEEecC
Confidence 45666655 346777 99999999888 8888777665542 2567899999999 9999999999999999999998
Q ss_pred CCccc-cc--CCCCCCCCCCC----c-cccccCCC--CcccccccC---------------ccccCcEEecChHHHHHHH
Q psy14801 219 GSILA-QP--QSLNDVPENQI----S-YNEVEGIG--YSFAATTLD---------------RNVIDQWGKCGDKDTFLMA 273 (404)
Q Consensus 219 ~~~~~-~~--~~~~~~~~~~~----~-~~~~~~i~--~~~~~~~~~---------------~~~~~~~~~v~d~e~~~~~ 273 (404)
..... .. ..+....+... . ....+.+. ...+..+++ ..++..+..+...|+.+++
T Consensus 140 ~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~ 219 (397)
T PRK04346 140 EDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQI 219 (397)
T ss_pred CchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHH
Confidence 64210 00 00111111100 0 00000000 000000000 0011223344456666555
Q ss_pred HHHH--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC----------------------ccc--------
Q psy14801 274 RRLI--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN----------------------YLT-------- 321 (404)
Q Consensus 274 ~~l~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~----------------------~~~-------- 321 (404)
.+.. .-+.++++.|+|++++|+...+.+ +|+.+++.|++.+... |+.
T Consensus 220 ~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~ 298 (397)
T PRK04346 220 LEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQIL 298 (397)
T ss_pred HHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccC
Confidence 4311 124599999999999999887655 6889999999976310 000
Q ss_pred -----------cccch--hHHhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801 322 -----------KFISD--EWMIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL 371 (404)
Q Consensus 322 -----------~~~~~--~~~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~ 371 (404)
+.++. .++.+ +...++|+++..+ .+|+++++++++++++++++++||+++
T Consensus 299 ~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~~~~~Vvv~l 378 (397)
T PRK04346 299 ETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNL 378 (397)
T ss_pred CCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcCCCCeEEEEe
Confidence 11111 11222 2245778777653 488899999999998888899999999
Q ss_pred cCCCcchhhccC
Q psy14801 372 ADGVRNYLTKFI 383 (404)
Q Consensus 372 ~D~g~rYl~~~~ 383 (404)
||+|+||++++.
T Consensus 379 sGrG~kd~~~~~ 390 (397)
T PRK04346 379 SGRGDKDVFTVA 390 (397)
T ss_pred CCCCccCHHHHH
Confidence 999999999864
No 124
>PRK08639 threonine dehydratase; Validated
Probab=99.63 E-value=2.4e-15 Score=148.95 Aligned_cols=232 Identities=9% Similarity=0.034 Sum_probs=143.1
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+.+..+..+|+ .|+.||.+|.| +|.|+.++.++.. .....||++|+|| +|.++|+.++..|+++++|+|+++
T Consensus 32 ~~ls~~~g~~l~~K~E~~~ptGSfK--~RgA~~~i~~l~~~~~~~~Vv~aSsGN--~g~alA~~a~~~G~~~~IvmP~~~ 107 (420)
T PRK08639 32 DYLSEKYGANVYLKREDLQPVRSYK--LRGAYNAISQLSDEELAAGVVCASAGN--HAQGVAYACRHLGIPGVIFMPVTT 107 (420)
T ss_pred HHHHHHhCCEEEEEecCCCCCCCcH--HHHHHHHHHhCCHHhhCCEEEEECccH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence 3444444456777 99999999999 9999999988652 2344688999999 999999999999999999999987
Q ss_pred cccccCCCCCCCCC----C-Cccc----------cccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEec
Q psy14801 221 ILAQPQSLNDVPEN----Q-ISYN----------EVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVG 285 (404)
Q Consensus 221 ~~~~~~~~~~~~~~----~-~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~ 285 (404)
+......+...++. . .... .....+ .++..++++...-........|++++...-..-+.+++.
T Consensus 108 ~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g-~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~vv~~ 186 (420)
T PRK08639 108 PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETG-ATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVP 186 (420)
T ss_pred hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcC-CcccCCCCChhHhcchhHHHHHHHHhccccCCCCEEEEe
Confidence 53221111111111 0 0000 000011 111222211111111223344444433210002558899
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------c---ccc-----ch-hH-----HhhcCccCc
Q psy14801 286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------T---KFI-----SD-EW-----MIEKGFLDE 337 (404)
Q Consensus 286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~---~~~-----~~-~~-----~~~~~~~~~ 337 (404)
.|||++++|+..++|+.+|+.+|+.|+|.+...+. . .++ ++ .+ ..|..+.++
T Consensus 187 vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~ 266 (420)
T PRK08639 187 VGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVP 266 (420)
T ss_pred cChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEEC
Confidence 99999999999999999999999999997643210 0 111 11 11 223445677
Q ss_pred HHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 338 AEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 338 ~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
++++..+ .|+|+++++++++++++ ++++||+|+|. |...+++
T Consensus 267 d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sG-gn~d~~~ 321 (420)
T PRK08639 267 EGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISG-GNNDIER 321 (420)
T ss_pred HHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCC-CCCCHHH
Confidence 7766553 37777787777766555 78999999985 6666665
No 125
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.62 E-value=2.9e-15 Score=154.00 Aligned_cols=226 Identities=13% Similarity=0.049 Sum_probs=142.9
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc-------
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL------- 222 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~------- 222 (404)
.+|+ .|+.||+||.| +|.+..++..+.+ ..+.+|+++|+|| +|+++|+.++..|+++++++|.....
T Consensus 348 ~IylK~E~lNpTGS~K--dR~Al~~i~~A~~~G~~~~IvetssGN--hG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~ 423 (695)
T PRK13802 348 RVFLKREDLNHTGAHK--INNALGQALLVKRMGKTRVIAETGAGQ--HGVATATVCAMLGLKCRIYMGQIDARRQALNVA 423 (695)
T ss_pred eEEEEEccCCCcCCcH--HHHHHHHHHHHHHcCCCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHH
Confidence 5777 89999999999 9999998877753 2567899999999 99999999999999999999986421
Q ss_pred ---cccCCCCCCCCCCCc--c-------ccccCCCC-cccccccCc-----cccCcEEecChHHHHHHHHHHH---HhcC
Q psy14801 223 ---AQPQSLNDVPENQIS--Y-------NEVEGIGY-SFAATTLDR-----NVIDQWGKCGDKDTFLMARRLI---KSEG 281 (404)
Q Consensus 223 ---~~~~~~~~~~~~~~~--~-------~~~~~i~~-~~~~~~~~~-----~~~~~~~~v~d~e~~~~~~~l~---~~~g 281 (404)
..+..+...+..... . ........ .++..+... .++..+..+...|+++++.+.. .-+.
T Consensus 424 ~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~ 503 (695)
T PRK13802 424 RMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDA 503 (695)
T ss_pred HHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence 011111111000000 0 00000000 011111100 0112333344455555543210 1255
Q ss_pred cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC------------------------Cccccc-----c--------
Q psy14801 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR------------------------NYLTKF-----I-------- 324 (404)
Q Consensus 282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~------------------------~~~~~~-----~-------- 324 (404)
+|++.|||++++|+.+.+++ .++.+++.|++.+.. .|+... +
T Consensus 504 VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~g 582 (695)
T PRK13802 504 ICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAG 582 (695)
T ss_pred EEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccc
Confidence 89999999999999999976 588999999986531 111111 0
Q ss_pred ------ch--hHHhhcC----ccCcHHHHHH-------------hccchhHHHHHHHHHHhcCC----CCeEEEEEcCCC
Q psy14801 325 ------SD--EWMIEKG----FLDEAEELEE-------------MIHSGTAMHVACQAAKSLRP----DQRCVVILADGV 375 (404)
Q Consensus 325 ------~~--~~~~~~~----~~~~~~~~~~-------------g~SsGa~~~~a~~~~~~~~~----~~~iv~i~~D~g 375 (404)
+. .++.+.+ ..++|++++. +.|||+++++|+++++++++ +++||+++||+|
T Consensus 583 Ldy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~G 662 (695)
T PRK13802 583 LDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRG 662 (695)
T ss_pred cCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCC
Confidence 00 1111111 2367777665 34999999999999998754 569999999999
Q ss_pred cchhhcc
Q psy14801 376 RNYLTKF 382 (404)
Q Consensus 376 ~rYl~~~ 382 (404)
+||++++
T Consensus 663 dKdl~~~ 669 (695)
T PRK13802 663 DKDMNTA 669 (695)
T ss_pred cCCHHHH
Confidence 9999995
No 126
>PRK06110 hypothetical protein; Provisional
Probab=99.61 E-value=1.7e-15 Score=145.16 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=143.3
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
.++.+..+..+|+ +|+.||.||.| +|.+..++.++..+ ....||++++|| +|+++|+.++..|+++++|+|.+
T Consensus 28 ~~l~~~~g~~i~~K~E~~nptGS~K--~Rga~~~l~~a~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~ 103 (322)
T PRK06110 28 PLLAERLGCEVWVKHENHTPTGAFK--VRGGLVYFDRLARRGPRVRGVISATRGN--HGQSVAFAARRHGLAATIVVPHG 103 (322)
T ss_pred hhHHHHhCCeEEEEeccCCCcCCcH--HHHHHHHHHHhhhhcCCCceEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCC
Confidence 3445444445776 99999999999 99999999888632 122478889999 99999999999999999999998
Q ss_pred CcccccCCCCCCCCCCCc--cc----------cccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801 220 SILAQPQSLNDVPENQIS--YN----------EVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS 287 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~--~~----------~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~ 287 (404)
.+......+......... .. .....+. ++..+++.... ..+.....|++++..+ -+.+|+..|
T Consensus 104 ~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~-~G~~t~~~Ei~~q~~~---~D~vv~pvG 178 (322)
T PRK06110 104 NSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGL-HMVPSFHPDLV-RGVATYALELFRAVPD---LDVVYVPIG 178 (322)
T ss_pred CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC-EEcCCCCChHH-hccchHHHHHHhhCCC---CCEEEEecC
Confidence 753211111111111000 00 0000011 11111111111 1223334444433321 145899999
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------ccccc----c-h-hH-----HhhcCccCcHH
Q psy14801 288 SGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFI----S-D-EW-----MIEKGFLDEAE 339 (404)
Q Consensus 288 tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~----~-~-~~-----~~~~~~~~~~~ 339 (404)
||++++|+.+.+++.+|+.+|++|+|.+...+ +...+ . . .| ..+..+.++|+
T Consensus 179 ~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~ 258 (322)
T PRK06110 179 MGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDD 258 (322)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHH
Confidence 99999999999999889999999999664211 00111 0 0 11 22344667777
Q ss_pred HHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 340 ELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 340 ~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
+++++ .|+|+++++++++.+.+ ++++||+|+|. |.-.++.
T Consensus 259 e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tG-gn~d~~~ 311 (322)
T PRK06110 259 EVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSG-GNIDRAV 311 (322)
T ss_pred HHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECC-CCCCHHH
Confidence 77663 38889999998877664 68899999999 6666654
No 127
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.57 E-value=1.7e-14 Score=148.54 Aligned_cols=239 Identities=12% Similarity=0.068 Sum_probs=146.3
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
++++..+..+|+ .|..||+||.| +|.+..++..+.+ .++.+|+++|+|| .|+++|+.++..|+++++++|....
T Consensus 279 ~Ls~~~G~~IylK~E~lnptGS~K--~r~al~~~~~a~~~g~~~vi~e~gsGn--hG~A~A~~aa~~Gl~~~I~m~~~~~ 354 (610)
T PRK13803 279 RLSDIYGARIYLKREDLNHTGSHK--INNALGQALLAKRMGKTRIIAETGAGQ--HGVATATACALFGLKCTIFMGEEDI 354 (610)
T ss_pred HHHHhhCCEEEEEeCCCCCcccHH--HHHHHHHHHHHHHcCCCEEEEecChHH--HHHHHHHHHHHcCCcEEEEEeCCcc
Confidence 444444446777 89999999988 8888877665442 3678899999999 9999999999999999999997742
Q ss_pred cccc---CCCCCCCCCCCc-----ccc-------c----cCCCCc-cccccc-C----ccccCcEEecChHHHHHHHHHH
Q psy14801 222 LAQP---QSLNDVPENQIS-----YNE-------V----EGIGYS-FAATTL-D----RNVIDQWGKCGDKDTFLMARRL 276 (404)
Q Consensus 222 ~~~~---~~~~~~~~~~~~-----~~~-------~----~~i~~~-~~~~~~-~----~~~~~~~~~v~d~e~~~~~~~l 276 (404)
.... ..+....+.... ... . ...... ++.... . ..++..+..+...|+++++.+-
T Consensus 355 ~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~ 434 (610)
T PRK13803 355 KRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQ 434 (610)
T ss_pred cchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHh
Confidence 1000 001111110000 000 0 000000 000000 0 0001112223344444443211
Q ss_pred H--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------------------C---ccc-----------
Q psy14801 277 I--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------------------N---YLT----------- 321 (404)
Q Consensus 277 ~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------------------~---~~~----------- 321 (404)
. .-+.+|++.|||++++|+...+++ .++.+++.|++.+.. . |+.
T Consensus 435 ~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~ 513 (610)
T PRK13803 435 TGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPH 513 (610)
T ss_pred hCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCc
Confidence 0 124599999999999999998865 688999999997631 0 000
Q ss_pred --------cccchhH--Hhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801 322 --------KFISDEW--MIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADG 374 (404)
Q Consensus 322 --------~~~~~~~--~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~ 374 (404)
+.++... +.+ ....++|+++..+ .|||++++++++++++++++++||+++||+
T Consensus 514 sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~~~~~Vvv~lsG~ 593 (610)
T PRK13803 514 SISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGR 593 (610)
T ss_pred eeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcCCCCeEEEEeCCC
Confidence 1111111 111 1245777776653 399999999999988888899999999999
Q ss_pred CcchhhccCCHHHHH
Q psy14801 375 VRNYLTKFISDEWMI 389 (404)
Q Consensus 375 g~rYl~~~~~~~w~~ 389 (404)
|+||++++ ..|+.
T Consensus 594 G~kd~~~~--~~~~~ 606 (610)
T PRK13803 594 GDKDIPTL--KEYFE 606 (610)
T ss_pred CcCCHHHH--HHHHh
Confidence 99999986 34553
No 128
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.56 E-value=1.4e-14 Score=142.83 Aligned_cols=232 Identities=9% Similarity=0.058 Sum_probs=140.9
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+++..+..+|+ .|+.||.+|.| +|.|+.++.++.. .....||++|+|| .|.++|+.++..|+++++|+|+..
T Consensus 23 ~~ls~~~g~~iy~K~E~~~ptGSfK--~RgA~~~i~~l~~~~~~~gvv~aSsGN--~g~a~A~~a~~~G~~~~iv~p~~~ 98 (409)
T TIGR02079 23 ERLSEKYGANIYLKREDLQPVRSYK--IRGAYNFLKQLSDAQLAKGVVCASAGN--HAQGFAYACRHLGVHGTVFMPATT 98 (409)
T ss_pred HHHHHHhCCEEEEEecCCCCCCCcH--HHHHHHHHHhCCHHhhCCEEEEECccH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence 3445444456777 89999999999 9999999887642 2222488889999 999999999999999999999987
Q ss_pred cccccCCCCCCCCCC-----CccccccC--CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccc
Q psy14801 221 ILAQPQSLNDVPENQ-----ISYNEVEG--IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGS 287 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~-----~~~~~~~~--i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~ 287 (404)
+......+...++.. ......+. ....+. ......+++++.+....+.+ ..+.||+++. .+++..|
T Consensus 99 ~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~-~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG 177 (409)
T TIGR02079 99 PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHV-EDHGGTFIPPFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVG 177 (409)
T ss_pred CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHH-HhcCCEEeCCCCCHhHhhhhHHHHHHHHHhcCCCCCEEEEEec
Confidence 532211111111110 00000000 000000 00001122222111111222 2345565543 4888999
Q ss_pred hhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------ccc--------cch-hH-----HhhcCccCcHH
Q psy14801 288 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------TKF--------ISD-EW-----MIEKGFLDEAE 339 (404)
Q Consensus 288 tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~~~--------~~~-~~-----~~~~~~~~~~~ 339 (404)
||++++|+.+++|+++|+.+|+.|+|.+...+. ++. .++ .| +.|..+.++|+
T Consensus 178 ~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~ 257 (409)
T TIGR02079 178 GGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEG 257 (409)
T ss_pred HhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHH
Confidence 999999999999999999999999997642210 000 011 11 23444567777
Q ss_pred HHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801 340 ELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 340 ~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~ 381 (404)
++..+ .|+|++++|++++.++ .++++||+|+|. |.-.+++
T Consensus 258 e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~-~~~~~Vv~ilsG-gn~d~~~ 310 (409)
T TIGR02079 258 AVCTTILDLYNLEGIVAEPAGALSIAALERLGEE-IKGKTVVCVVSG-GNNDIER 310 (409)
T ss_pred HHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh-cCCCeEEEEECC-CCCCHHH
Confidence 66553 3778888888877655 468999999996 5555544
No 129
>PLN02569 threonine synthase
Probab=99.54 E-value=4.4e-14 Score=141.07 Aligned_cols=234 Identities=14% Similarity=0.073 Sum_probs=139.5
Q ss_pred HHHHHHh-CC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEE
Q psy14801 142 AHRIASQ-MK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLV 213 (404)
Q Consensus 142 a~~l~~~-~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi 213 (404)
+.++.+. .+ ..+|+ +|+.||++|.| ||.+.-++..+.. .+...|++++||| +|+++|+.++..|++++
T Consensus 139 ~~~l~~~~~G~~~l~~K~E~~nPTGSFK--DRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN--~GaAlAayaa~~Gl~~~ 214 (484)
T PLN02569 139 AERLGKEFLGMNDLWVKHCGISHTGSFK--DLGMTVLVSQVNRLRKMAKPVVGVGCASTGD--TSAALSAYCAAAGIPSI 214 (484)
T ss_pred hhhhhHhhcCCccEEEEECCCCCCcCHH--HHHHHHHHHHHHHhhhccCCccEEEEeCCcH--HHHHHHHHHHhcCCeEE
Confidence 3445544 32 24666 99999999999 9976655554431 2446789999999 89999999999999999
Q ss_pred EEcCCC-CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC------
Q psy14801 214 GADPFG-SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG------ 281 (404)
Q Consensus 214 ~V~p~~-~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g------ 281 (404)
++.|++ .+......+....+.... ....++ +..... ......+.+++ +....|-+ ..+.||++|.+
T Consensus 215 I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~-~~~~~~~~n~~-Np~~ieG~kT~a~EI~eQl~~~~pD~ 292 (484)
T PLN02569 215 VFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVT-AELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEVPDW 292 (484)
T ss_pred EEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHH-HHcCCEecCCC-CcchhHhHHHHHHHHHHHcCCCCCCE
Confidence 999997 431111111111111000 000000 000000 00000111221 22233332 34556666553
Q ss_pred cEeccchhhHHHHHHHHHHhc------CCCCeEEEEecCCCCCcc----------c---------ccc--ch-----hHH
Q psy14801 282 LLVGGSSGTAMHVACQAAKSL------RPDQRCVVILADGVRNYL----------T---------KFI--SD-----EWM 329 (404)
Q Consensus 282 i~~~~~tg~tlag~~~~lk~~------~~~~~vv~v~~~~~~~~~----------~---------~~~--~~-----~~~ 329 (404)
+++..|+|++++|+.+.++++ ++..++++|.+.+..... . ..+ +. ..+
T Consensus 293 VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l 372 (484)
T PLN02569 293 VIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAV 372 (484)
T ss_pred EEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCCCccHHHHH
Confidence 888889999999999999875 234589999986531110 0 000 11 111
Q ss_pred h-----hc-CccCcHHHHHHh------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801 330 I-----EK-GFLDEAEELEEM------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 330 ~-----~~-~~~~~~~~~~~g------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~ 381 (404)
. +. ...++|+++..+ .|||++++++.++.++ +.++.+||+|++|+|.||.+.
T Consensus 373 ~al~~s~g~~v~VsDeEi~~a~~~a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 373 YALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 1 11 245666665442 3899999999998875 457889999999999999875
No 130
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.54 E-value=1.2e-14 Score=141.73 Aligned_cols=211 Identities=10% Similarity=0.006 Sum_probs=126.9
Q ss_pred CcEee-cCCCCC-CChhhHHhhHHHHHHHHhC-----C----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801 151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDTG-----G----KVD-----------------MIVLGCGTGGTASGIGRK 202 (404)
Q Consensus 151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~~-----~----~~~-----------------~vvv~~gsG~~~~Gi~la 202 (404)
..+|+ +|+.|| +||.| +|.|+.++.++. + .|+ ..||+++||| +|+++|
T Consensus 75 ~~v~~K~E~~nP~tGSfK--dRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN--~G~alA 150 (404)
T cd06447 75 GRLLLKADSHLPISGSIK--ARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGN--LGLSIG 150 (404)
T ss_pred ceEEEEecCCCCCCCChH--HHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccH--HHHHHH
Confidence 35666 999999 89999 999999886531 1 133 2799999999 999999
Q ss_pred HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc---c-----ccccC----CCCcccccccCccccCcEEecChHHHH
Q psy14801 203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS---Y-----NEVEG----IGYSFAATTLDRNVIDQWGKCGDKDTF 270 (404)
Q Consensus 203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~---~-----~~~~~----i~~~~~~~~~~~~~~~~~~~v~d~e~~ 270 (404)
+.++..|+++++|+|.+++......+......... . ..... .+..++..+.+..++-.++.....|++
T Consensus 151 ~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~iaG~~T~g~EI~ 230 (404)
T cd06447 151 IMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFLGYAVAASRLK 230 (404)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHhhHHHHHHHHH
Confidence 99999999999999998864322212111111100 0 00000 001111111111122222233333443
Q ss_pred HHHHHHH-Hhc-----CcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCc------------ccccc-------
Q psy14801 271 LMARRLI-KSE-----GLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNY------------LTKFI------- 324 (404)
Q Consensus 271 ~~~~~l~-~~~-----gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~------------~~~~~------- 324 (404)
++...+. +.+ .+++..|+|++++|+.+++|+. +|+.+|+.|+|.+...+ ....+
T Consensus 231 eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~Ti 310 (404)
T cd06447 231 AQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTA 310 (404)
T ss_pred HHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccch
Confidence 3332110 001 2568889999999999999996 78999999998654221 00000
Q ss_pred ---------ch-h-----HHhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCe
Q psy14801 325 ---------SD-E-----WMIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQR 366 (404)
Q Consensus 325 ---------~~-~-----~~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~ 366 (404)
.+ . ...|..+.++|+++.++ .|||++++++++++++. ++++
T Consensus 311 adGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~-~~~~ 379 (404)
T cd06447 311 ADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA-EGKR 379 (404)
T ss_pred hhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh-hHHH
Confidence 00 0 12344456788777663 39999999999998874 4433
No 131
>PRK08246 threonine dehydratase; Provisional
Probab=99.54 E-value=1.2e-14 Score=138.36 Aligned_cols=211 Identities=13% Similarity=0.094 Sum_probs=129.3
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~ 229 (404)
..+|+ +|+.||++|.| +|.++.++.++.. +...||+++||| +|+++|+.++..|+++++|+|...+......+.
T Consensus 37 ~~i~~K~E~~nptGS~K--~R~a~~~~~~~~~-~~~~vv~aSsGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~ 111 (310)
T PRK08246 37 APVWLKLEHLQHTGSFK--ARGAFNRLLAAPV-PAAGVVAASGGN--AGLAVAYAAAALGVPATVFVPETAPPAKVARLR 111 (310)
T ss_pred CEEEEEECCCCCCCCCH--HHHHHHHHHhhcc-cCCeEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence 45666 99999999999 9999999988764 566788889999 999999999999999999999886422111111
Q ss_pred CCCCCCC--ccc------cccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHh----cCcEeccchhhHHHH
Q psy14801 230 DVPENQI--SYN------EVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS----EGLLVGGSSGTAMHV 294 (404)
Q Consensus 230 ~~~~~~~--~~~------~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~----~gi~~~~~tg~tlag 294 (404)
....... ... ....+ ...++..++++.+.-..+. .++.|+++| +.+++..|||++++|
T Consensus 112 ~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~-------t~~~Ei~eq~~~~D~iv~~vG~GG~~~G 184 (310)
T PRK08246 112 ALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAG-------TLGLEIEEQAPGVDTVLVAVGGGGLIAG 184 (310)
T ss_pred HCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchH-------HHHHHHHHhcCCCCEEEEecCccHHHHH
Confidence 1111100 000 00000 0011112221111111122 234555554 348899999999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCCCCcc------------cccc----------ch-hH-----HhhcCccCcHHHHHHh--
Q psy14801 295 ACQAAKSLRPDQRCVVILADGVRNYL------------TKFI----------SD-EW-----MIEKGFLDEAEELEEM-- 344 (404)
Q Consensus 295 ~~~~lk~~~~~~~vv~v~~~~~~~~~------------~~~~----------~~-~~-----~~~~~~~~~~~~~~~g-- 344 (404)
+.++++. ..+|++|++.+...+. .... .. .| ..+..+.++|+++..+
T Consensus 185 i~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~ 261 (310)
T PRK08246 185 IAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARR 261 (310)
T ss_pred HHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHH
Confidence 9999864 3789999996642210 0000 00 11 1223355777776553
Q ss_pred -----------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801 345 -----------IHSGTAMHVACQAAKSLRPDQRCVVILADGVR 376 (404)
Q Consensus 345 -----------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~ 376 (404)
.|+|++++++++...+..++++||+|+|+++-
T Consensus 262 ~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 262 ALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCGANT 304 (310)
T ss_pred HHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECCCCC
Confidence 27777877766544333468899999999764
No 132
>PRK05638 threonine synthase; Validated
Probab=99.54 E-value=3.7e-14 Score=141.53 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=138.1
Q ss_pred CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801 151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229 (404)
Q Consensus 151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~ 229 (404)
..+|+ +|+.||++|.| ||.+..++.++.......|++++||| +|+++|+.++..|+++++++|.+.+......+.
T Consensus 80 ~~l~~K~E~~nPtGSfK--dR~a~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~ 155 (442)
T PRK05638 80 ENVYIKDETRNPTGSFR--DRLATVAVSYGLPYAANGFIVASDGN--AAASVAAYSARAGKEAFVVVPRKVDKGKLIQMI 155 (442)
T ss_pred CeEEEEeCCCCCCCChH--HHHHHHHHHHHHHcCCCEEEEeCCCh--HHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH
Confidence 34666 99999999999 99999999877644344677799999 999999999999999999999986432111111
Q ss_pred CCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh---cCcEeccchhhHHHHHHHHHHh
Q psy14801 230 DVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS---EGLLVGGSSGTAMHVACQAAKS 301 (404)
Q Consensus 230 ~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~---~gi~~~~~tg~tlag~~~~lk~ 301 (404)
........ ...... ..... .......+.+++.+....+-+ ..+.||+++ +.+|+..|+|++++|+.+.+++
T Consensus 156 ~~GA~vi~v~~~~~~~~~~a~~~-~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfke 234 (442)
T PRK05638 156 AFGAKIIRYGESVDEAIEYAEEL-ARLNGLYNVTPEYNIIGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKE 234 (442)
T ss_pred hcCcEEEEECCCHHHHHHHHHHH-HHhCCeEecCCCCChhHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHH
Confidence 11111000 000000 00000 000011112222222223322 235566665 4599999999999999999998
Q ss_pred cCCC------CeEEEEecCCCCCccc---------------------cccch---hHHhh---cCccCcHHHHHH-----
Q psy14801 302 LRPD------QRCVVILADGVRNYLT---------------------KFISD---EWMIE---KGFLDEAEELEE----- 343 (404)
Q Consensus 302 ~~~~------~~vv~v~~~~~~~~~~---------------------~~~~~---~~~~~---~~~~~~~~~~~~----- 343 (404)
+.+. .++++|.+.+..++.. +.... .++.+ ....++|+++..
T Consensus 235 l~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l 314 (442)
T PRK05638 235 LLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLL 314 (442)
T ss_pred HHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence 6542 4899999954322110 00001 11211 123455555433
Q ss_pred -------hccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801 344 -------MIHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL 379 (404)
Q Consensus 344 -------g~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl 379 (404)
+.|||++++++.+++++ +.++++||++++|+|.|+.
T Consensus 315 ~~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 315 AKEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HhcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 34999999999999876 4678999999999999985
No 133
>PRK06381 threonine synthase; Validated
Probab=99.53 E-value=7.3e-14 Score=133.96 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=135.0
Q ss_pred HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
+.++.+..+ ..+|+ +|+.||++|.| +|.+..++.++.++-...||++++|| +|+++|+.++..|+++++|+|..
T Consensus 21 ~~~l~~~~G~~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~lv~aSsGN--~g~alA~~aa~~G~~~~ivvp~~ 96 (319)
T PRK06381 21 ARKLEEELGLRKIYLKFEGANPTGTQK--DRIAEAHVRRAMRLGYSGITVGTCGN--YGASIAYFARLYGLKAVIFIPRS 96 (319)
T ss_pred hHhhHHhcCCceEEEEecCCCCccCcH--HHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEECCC
Confidence 344554443 34666 99999999999 99999999988743224567788999 99999999999999999999987
Q ss_pred CcccccCCCCCCCCCCC---cccc-ccCCCCcccccccCccccCcEE-ec-ChHHH-HHHHHHHHHh-----cCcEeccc
Q psy14801 220 SILAQPQSLNDVPENQI---SYNE-VEGIGYSFAATTLDRNVIDQWG-KC-GDKDT-FLMARRLIKS-----EGLLVGGS 287 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~---~~~~-~~~i~~~~~~~~~~~~~~~~~~-~v-~d~e~-~~~~~~l~~~-----~gi~~~~~ 287 (404)
.+......+........ .... .......+. ......+.+++. +. ...+- ..++.||++| +.+|+..|
T Consensus 97 ~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vG 175 (319)
T PRK06381 97 YSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFA-KENGIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVG 175 (319)
T ss_pred CCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHH-HHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 64321111111111000 0000 000000000 000000001110 00 01111 1234455554 34889999
Q ss_pred hhhHHHHHHHHHHhc------CCCCeEEEEecCCCCCc---------c-----c----------cc-----cchh----H
Q psy14801 288 SGTAMHVACQAAKSL------RPDQRCVVILADGVRNY---------L-----T----------KF-----ISDE----W 328 (404)
Q Consensus 288 tg~tlag~~~~lk~~------~~~~~vv~v~~~~~~~~---------~-----~----------~~-----~~~~----~ 328 (404)
||++++|+.+.+++. ++..+|+.|.+.+.... . . +. ++.. .
T Consensus 176 tGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (319)
T PRK06381 176 NGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEA 255 (319)
T ss_pred ccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHH
Confidence 999999999999987 78899999998653211 0 0 00 0000 1
Q ss_pred Hhh---cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcC
Q psy14801 329 MIE---KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILAD 373 (404)
Q Consensus 329 ~~~---~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D 373 (404)
+.+ ..+.++|++++++ .|||++++++++++++...+++||+++|=
T Consensus 256 ~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tG 316 (319)
T PRK06381 256 IYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITG 316 (319)
T ss_pred HHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence 122 3455777766553 38999999999998875446899999873
No 134
>PRK07591 threonine synthase; Validated
Probab=99.53 E-value=5.2e-14 Score=139.35 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=140.9
Q ss_pred HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
..++.+..+ ..+|+ +|+.||++|.| +|.+..++..+.+. .+ .|+++++|| +|+++|+.++..|+++++++|.
T Consensus 95 ~~~l~~~lG~~~l~~K~E~~nPtGSfK--dRga~~~v~~A~~~g~~-~vv~aSsGN--~g~alA~~aa~~Gl~~~I~vP~ 169 (421)
T PRK07591 95 ADRLARELGLKNLYIKDDSVNPTHSFK--DRVVSVALTAARELGFT-TVACASTGN--LANSVAAHAARAGLDSCVFIPA 169 (421)
T ss_pred hHHHHHHhCCCcEEEEeCCCCCccChH--HHHHHHHHHHHHHcCCC-EEEEeCCCH--HHHHHHHHHHHcCCCEEEEEcC
Confidence 345555443 25666 99999999999 99888888776533 34 456789999 9999999999999999999998
Q ss_pred CCcccccCCCCCCCCCCC---cc-----ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHh------cCcEe
Q psy14801 219 GSILAQPQSLNDVPENQI---SY-----NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS------EGLLV 284 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~---~~-----~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~------~gi~~ 284 (404)
+.+......+........ .. ..+..+........+.+.+.+.++ +... ...+.|+++| +.+|+
T Consensus 170 ~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~--~Tia~Ei~eQl~~~~pD~iv~ 246 (421)
T PRK07591 170 DLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGS--KTLGYEVAEQLGWRLPDQVVA 246 (421)
T ss_pred CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccch--HHHHHHHHHHcCCCCCCEEEE
Confidence 764211111111111100 00 000000000000000000111111 1000 1224444444 34888
Q ss_pred ccchhhHHHHHHHHHHhc-------CCCCeEEEEecCCCCCcc--------------ccccchh--------------HH
Q psy14801 285 GGSSGTAMHVACQAAKSL-------RPDQRCVVILADGVRNYL--------------TKFISDE--------------WM 329 (404)
Q Consensus 285 ~~~tg~tlag~~~~lk~~-------~~~~~vv~v~~~~~~~~~--------------~~~~~~~--------------~~ 329 (404)
..|+|++++|+.+.++++ .+..+|++|++.+..... ...+.+. .+
T Consensus 247 pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i 326 (421)
T PRK07591 247 PLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIA 326 (421)
T ss_pred eCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHH
Confidence 999999999999999986 577899999997632110 0111110 01
Q ss_pred hh---cCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801 330 IE---KGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF 382 (404)
Q Consensus 330 ~~---~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~ 382 (404)
.+ ..+.++|+++.++ .|||++++++++++++ +.++++||++++++|.+|+..+
T Consensus 327 ~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 327 RRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 11 2345677776553 2889999999998874 6688999999999999998763
No 135
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.52 E-value=4.6e-14 Score=138.96 Aligned_cols=233 Identities=10% Similarity=-0.005 Sum_probs=137.1
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc---ccC
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA---QPQ 226 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~---~~~ 226 (404)
.+|+ .|+.||.+|.| +|.|..++..+.. ....+++++|+|| .|+++|+.++..|+++++++|..+... ...
T Consensus 95 ~Iy~K~E~~nPtGS~K--~R~A~~~a~~a~~~G~~~~vtetgsGN--~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~ 170 (427)
T PRK12391 95 KIYYKYEGVSPTGSHK--PNTAVAQAYYNKKEGIKRLTTETGAGQ--WGSALALACALFGLECTVFMVRVSYEQKPYRRS 170 (427)
T ss_pred eEEEEEcCCCCCCChH--HHHHHHHHHHHHHCCCCEEEEccCchH--HHHHHHHHHHHcCCcEEEEEecCCcccCHHHHH
Confidence 4665 99999999988 9999888755442 2457888999999 999999999999999999999743110 000
Q ss_pred CCCCCCCCCCc-c---cc--------------------------ccCCCC-cccccccCccccCcEEecChHHHHHHHHH
Q psy14801 227 SLNDVPENQIS-Y---NE--------------------------VEGIGY-SFAATTLDRNVIDQWGKCGDKDTFLMARR 275 (404)
Q Consensus 227 ~~~~~~~~~~~-~---~~--------------------------~~~i~~-~~~~~~~~~~~~~~~~~v~d~e~~~~~~~ 275 (404)
.+....+.... . .. ....+. .+..... ..++..+..+...|+++++..
T Consensus 171 ~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~-~~~~~~~~~~ig~Ei~~Ql~~ 249 (427)
T PRK12391 171 LMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSV-LNHVLLHQTVIGLEAKKQLEL 249 (427)
T ss_pred HHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCC-CcHHHhhHHHHHHHHHHHHHh
Confidence 01111100000 0 00 000000 0110000 001111222334555554432
Q ss_pred HH-HhcCcEeccchhhHHHHHHH-HHHhc--C-CCCeEEEEecCCCCCccc-------------------cccchhHH--
Q psy14801 276 LI-KSEGLLVGGSSGTAMHVACQ-AAKSL--R-PDQRCVVILADGVRNYLT-------------------KFISDEWM-- 329 (404)
Q Consensus 276 l~-~~~gi~~~~~tg~tlag~~~-~lk~~--~-~~~~vv~v~~~~~~~~~~-------------------~~~~~~~~-- 329 (404)
.. .-+.++++.|+|++++|+.. +++.. . ++.+|++|++.+...+.. ..++.+++
T Consensus 250 ~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~ 329 (427)
T PRK12391 250 AGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPP 329 (427)
T ss_pred cCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCc
Confidence 21 12458888999999999997 44432 4 778999999965421100 01111110
Q ss_pred -------------------hh----cCccCcHHHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEc
Q psy14801 330 -------------------IE----KGFLDEAEELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILA 372 (404)
Q Consensus 330 -------------------~~----~~~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~ 372 (404)
.+ +...++++++++++ |||++++++++++++.. .++..+++++
T Consensus 330 ~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~ 409 (427)
T PRK12391 330 PIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFN 409 (427)
T ss_pred cccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 11 12346777776643 99999999999987632 3445677888
Q ss_pred CCCcchhhccCCHHHHH
Q psy14801 373 DGVRNYLTKFISDEWMI 389 (404)
Q Consensus 373 D~g~rYl~~~~~~~w~~ 389 (404)
++|.+|++....++|+.
T Consensus 410 lsG~G~~d~~~y~~~l~ 426 (427)
T PRK12391 410 LSGHGLLDLAAYDAYLA 426 (427)
T ss_pred eCCCCCCCHHHHHHHhc
Confidence 99999999855566763
No 136
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.52 E-value=7.9e-14 Score=140.23 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=142.5
Q ss_pred HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
+.++++..+..+|+ .|..||.+|.| +|.|+.++.++... ...-||++++|| .|.++|+.++..|+++++|+|.+
T Consensus 23 ~~~Ls~~~g~~i~lK~E~lqptgSfK--~RgA~n~i~~l~~~~~~~gVV~aSaGN--ha~~vA~aa~~~Gi~~~IvmP~~ 98 (499)
T TIGR01124 23 AAKLSERLGNRILIKREDLQPVFSFK--LRGAYNKMAQLSPEQKARGVIAASAGN--HAQGVAFSAARLGLKALIVMPET 98 (499)
T ss_pred hHHHHHHhCCEEEEEecCCCCCCCCH--HHHHHHHHHHhhHHhcCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 44555555556777 89999999999 99999999877421 112467789999 88899999999999999999998
Q ss_pred CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchh
Q psy14801 220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSG 289 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg 289 (404)
++......+...+..... ...... ....+ .......++.++.+....+.+ ..+.||+++. .+++..|||
T Consensus 99 tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~l-a~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~vvvpvGgG 177 (499)
T TIGR01124 99 TPDIKVDAVRGFGGEVVLHGANFDDAKAKAIEL-SQEKGLTFIHPFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGG 177 (499)
T ss_pred CCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHH-HHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCCCCCEEEEccCcc
Confidence 764221111111111000 000000 00000 000011122222111111112 2345666654 388889999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc------ccc-----ch-hH-----HhhcCccCcHHHH
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT------KFI-----SD-EW-----MIEKGFLDEAEEL 341 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~------~~~-----~~-~~-----~~~~~~~~~~~~~ 341 (404)
++++|+..++|+..|+.+|+.|+|.+...+ +. .++ +. .| ..|..+.++++++
T Consensus 178 GliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei 257 (499)
T TIGR01124 178 GLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEV 257 (499)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHH
Confidence 999999999999999999999999654211 00 011 11 11 2344566777766
Q ss_pred HHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcc
Q psy14801 342 EEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRN 377 (404)
Q Consensus 342 ~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~r 377 (404)
..+ .|+|++++++++++++.. ++++||+|+|.++..
T Consensus 258 ~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~ 307 (499)
T TIGR01124 258 CAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMN 307 (499)
T ss_pred HHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence 553 288888998888876632 588999999998753
No 137
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.50 E-value=1.7e-13 Score=134.75 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=133.7
Q ss_pred HHHHHhCC-CcEee-cCCC-CCCChhhHHhhHHH-----HHHHHhCCC------------------cCEEEEccCCChhH
Q psy14801 143 HRIASQMK-NAVVL-DQFR-NPNNPLSHYETTAE-----EILRDTGGK------------------VDMIVLGCGTGGTA 196 (404)
Q Consensus 143 ~~l~~~~~-~~~~~-~e~~-np~~si~g~~~~a~-----ei~~q~~~~------------------~~~vvv~~gsG~~~ 196 (404)
.++.+..+ ..+|+ +|.. ||.+|.| +|-+. -+.+++..+ ++.+|+++++||
T Consensus 51 ~~l~~~~G~~~v~~K~E~~q~ptgSFK--~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN-- 126 (399)
T PRK08206 51 PDLAAELGVGSILVKDESYRFGLNAFK--ALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGN-- 126 (399)
T ss_pred HHHHHHhCCCcEEEecccCcCCCCChH--HhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcH--
Confidence 34554444 25666 8886 7999999 77433 222333221 345789999999
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc--cc------ccc----CCCCccccc----ccCc--ccc
Q psy14801 197 SGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS--YN------EVE----GIGYSFAAT----TLDR--NVI 258 (404)
Q Consensus 197 ~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~--~~------~~~----~i~~~~~~~----~~~~--~~~ 258 (404)
+|+++|+.++..|+++++|+|...+......+......... .. .+. ..+..+... +++. .+.
T Consensus 127 ~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~~~~~~~~~~~~~~ 206 (399)
T PRK08206 127 HGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQDTAWEGYEEIPTWI 206 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecCccccCcccccHHH
Confidence 99999999999999999999998753211111111111000 00 000 001000000 1110 111
Q ss_pred CcEEecChHHHHHHHHHHH-HhcCcEeccchhhHHHHHHHHHHhcC--CCCeEEEEecCCCCCc----------ccc---
Q psy14801 259 DQWGKCGDKDTFLMARRLI-KSEGLLVGGSSGTAMHVACQAAKSLR--PDQRCVVILADGVRNY----------LTK--- 322 (404)
Q Consensus 259 ~~~~~v~d~e~~~~~~~l~-~~~gi~~~~~tg~tlag~~~~lk~~~--~~~~vv~v~~~~~~~~----------~~~--- 322 (404)
..++.....|+++++.... .-+.+|+..|||++++|+.++++++. +..+|++|+|.+...+ ..+
T Consensus 207 ~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~ 286 (399)
T PRK08206 207 MQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDM 286 (399)
T ss_pred HHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCC
Confidence 1222333344443332100 02458888899999999999999873 4789999999664221 000
Q ss_pred -ccchh----------H-----HhhcCccCcHHHHHHh-----------------ccchhHHHHHHHHHH----------
Q psy14801 323 -FISDE----------W-----MIEKGFLDEAEELEEM-----------------IHSGTAMHVACQAAK---------- 359 (404)
Q Consensus 323 -~~~~~----------~-----~~~~~~~~~~~~~~~g-----------------~SsGa~~~~a~~~~~---------- 359 (404)
.+.+. | ..+..+.++|+++..+ .|||++++++++++.
T Consensus 287 ~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~ 366 (399)
T PRK08206 287 DTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREK 366 (399)
T ss_pred CceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHh
Confidence 01111 1 1233455777665431 277788888876541
Q ss_pred -hcCCCCeEEEEEcCCC---cchhhccCCH
Q psy14801 360 -SLRPDQRCVVILADGV---RNYLTKFISD 385 (404)
Q Consensus 360 -~~~~~~~iv~i~~D~g---~rYl~~~~~~ 385 (404)
.+.++++||+|+||+. ++|.+.++|+
T Consensus 367 ~~i~~~~~Vv~iltgG~~d~~~~~~~~~~~ 396 (399)
T PRK08206 367 LGLDEDSRVLLISTEGDTDPDRYREIVWEG 396 (399)
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 2356899999999642 6666666554
No 138
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.49 E-value=8.9e-14 Score=133.34 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=103.2
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
++.+..+..+|+ +|+.||++|.| +|.+..++.++.++ .+.-||++++|| +|+++|+.++..|+++++|+|+..+
T Consensus 27 ~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~i~~a~~~~~~~gvv~aSsGN--~g~alA~~a~~~G~~~~i~vp~~~~ 102 (322)
T PRK07476 27 SLSARAGVPVWLKLETLQPTGSFK--LRGATNALLSLSAQERARGVVTASTGN--HGRALAYAARALGIRATICMSRLVP 102 (322)
T ss_pred hhHHhhCCeEEEEEccCCCCCCch--HHHHHHHHHhhhhhhhCCeEEEECCCh--HHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 344444445777 99999999999 99999999887642 233377889999 9999999999999999999999875
Q ss_pred ccccCCCCCCCCCCCc--c----------ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801 222 LAQPQSLNDVPENQIS--Y----------NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~--~----------~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg 289 (404)
......+......... . ......+. ++..++++...-+.+.....|++++... .+.+|+..|||
T Consensus 103 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~-~~~~~~~n~~~~~g~~t~~~Ei~~Q~~~---~d~iv~~vG~G 178 (322)
T PRK07476 103 ANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGL-TMVPPFDDPRIIAGQGTIGLEILEALPD---VATVLVPLSGG 178 (322)
T ss_pred HHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC-EEeCCCCCcceeechhHHHHHHHHhCcC---CCEEEEEcChH
Confidence 3211111111111000 0 00000111 1112221111111122333333333221 23489999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGV 316 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~ 316 (404)
++++|+.+.+|+..|+.+|++|++.+.
T Consensus 179 G~~~Gv~~~~k~~~~~~~vigVe~~~~ 205 (322)
T PRK07476 179 GLASGVAAAVKAIRPAIRVIGVSMERG 205 (322)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCc
Confidence 999999999999999999999999653
No 139
>PRK06260 threonine synthase; Validated
Probab=99.49 E-value=1.4e-13 Score=135.65 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=136.3
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN 229 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~ 229 (404)
.+|+ +|+.||++|.| ||.+..++.++.+.-...||+++||| +|+++|+.++..|+++++++|.+ .+......+.
T Consensus 84 ~l~~K~E~~nPTGSfK--dRga~~~v~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~ 159 (397)
T PRK06260 84 ELYVKHEGANPTGSFK--DRGMTVGVTKALELGVKTVACASTGN--TSASLAAYAARAGLKCYVLLPAGKVALGKLAQAL 159 (397)
T ss_pred cEEEEeCCCCCCcCcH--HHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHH
Confidence 4666 99999999999 99999888877543223677889999 89999999999999999999987 3321111111
Q ss_pred CCCCCCC---cc-----ccccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH
Q psy14801 230 DVPENQI---SY-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298 (404)
Q Consensus 230 ~~~~~~~---~~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~ 298 (404)
....... .. ..+..+ ...+...+++..... .+.....|++++... -.-+.+|+..|+|++++|+.+.
T Consensus 160 ~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~np~~~~-G~~t~a~Ei~eQl~~-~~pd~vvvpvG~Gg~~~Gi~~~ 237 (397)
T PRK06260 160 LHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSINPFRLE-GQKTIGFEIADQLGW-EVPDRVVLPVGNAGNISAIWKG 237 (397)
T ss_pred hcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCCCchhhc-chhhHHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHH
Confidence 1111000 00 000000 001111122211111 123334444433321 0124588999999999999999
Q ss_pred HHhcC------CCCeEEEEecCCCCCc----------c-----cc----c--cc-----h-h--HHh---hcCccCcHHH
Q psy14801 299 AKSLR------PDQRCVVILADGVRNY----------L-----TK----F--IS-----D-E--WMI---EKGFLDEAEE 340 (404)
Q Consensus 299 lk~~~------~~~~vv~v~~~~~~~~----------~-----~~----~--~~-----~-~--~~~---~~~~~~~~~~ 340 (404)
++++. +-.++++|++.+.... . .. . ++ . . .+. +..+.++|++
T Consensus 238 ~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e 317 (397)
T PRK06260 238 FKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEE 317 (397)
T ss_pred HHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHH
Confidence 98864 2358999998653211 0 00 0 00 0 0 121 1235577776
Q ss_pred HHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801 341 LEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 341 ~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~ 381 (404)
+..+ .|||++++++.+++++ +.++++||++++++|.|..+.
T Consensus 318 ~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~ 373 (397)
T PRK06260 318 ILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA 373 (397)
T ss_pred HHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence 6553 3889999999998876 457899999999999887654
No 140
>PRK08329 threonine synthase; Validated
Probab=99.49 E-value=1.8e-13 Score=132.47 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=135.4
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND 230 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~ 230 (404)
.+|+ +|+.||++|.| ||.+..++.++.+.-...||++++|| +|.++|+.++..|+++++++|.+.+......+..
T Consensus 73 ~l~~K~E~~nPtGSfK--dRga~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~ 148 (347)
T PRK08329 73 KVYFKLDYLQPTGSFK--DRGTYVTVAKLKEEGINEVVIDSSGN--AALSLALYSLSEGIKVHVFVSYNASKEKISLLSR 148 (347)
T ss_pred eEEEEeCCCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECCCc--HHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHH
Confidence 4665 89999999999 99999998877643224677788999 9999999999999999999998874321111111
Q ss_pred CCCCCC---ccc-cccCCCCcccccccCccccCcEEecChHHH-HHHHHHHHHh----cCcEeccchhhHHHHHHHHHHh
Q psy14801 231 VPENQI---SYN-EVEGIGYSFAATTLDRNVIDQWGKCGDKDT-FLMARRLIKS----EGLLVGGSSGTAMHVACQAAKS 301 (404)
Q Consensus 231 ~~~~~~---~~~-~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~-~~~~~~l~~~----~gi~~~~~tg~tlag~~~~lk~ 301 (404)
...... ... ........+ .......+..++.+....|- ...+.||++| +.+++..|||++++|+.+.+++
T Consensus 149 ~GA~v~~v~~~~~~~~~~a~~l-~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~g~ke 227 (347)
T PRK08329 149 LGAELHFVEGDRMEVHEEAVKF-SKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWKGFKE 227 (347)
T ss_pred cCCEEEEECCCHHHHHHHHHHH-HHhcCCeeccCCCCchhhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 111000 000 000000000 00000001111111111111 1234455554 3488999999999999999998
Q ss_pred cC------CCCeEEEEecCCCCCcc---------ccccc--------h--hHHhhc---CccCcHHHHHHh---------
Q psy14801 302 LR------PDQRCVVILADGVRNYL---------TKFIS--------D--EWMIEK---GFLDEAEELEEM--------- 344 (404)
Q Consensus 302 ~~------~~~~vv~v~~~~~~~~~---------~~~~~--------~--~~~~~~---~~~~~~~~~~~g--------- 344 (404)
+. +..++++|.+.+..... ...+. + ..+.+. .+.++|+++.++
T Consensus 228 l~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~~Gi 307 (347)
T PRK08329 228 LHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRRMGF 307 (347)
T ss_pred HHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCc
Confidence 63 45689999997632211 01110 0 112221 245677666552
Q ss_pred ---ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801 345 ---IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL 379 (404)
Q Consensus 345 ---~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl 379 (404)
.|||++++++.+++++ +.++++||++++=+|.|+|
T Consensus 308 ~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 308 LVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred eECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 3899999999999886 5678999999999998875
No 141
>PRK08526 threonine dehydratase; Provisional
Probab=99.49 E-value=6.9e-14 Score=137.39 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=134.7
Q ss_pred HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
..++++..+..+|+ +|+.||++|.| +|.|+.++.++... .. -||++++|| .|.++|+.++..|+++++|+|.
T Consensus 26 ~~~Ls~~~g~~iylK~E~lqptGSfK--~RgA~n~i~~l~~~~~~~-gVV~aSaGN--hg~avA~aa~~~Gi~~~IvmP~ 100 (403)
T PRK08526 26 APFLSKISGAEVYLKKENLQITGAYK--IRGAYNKIANLSEEQKQH-GVIAASAGN--HAQGVAISAKKFGIKAVIVMPE 100 (403)
T ss_pred hHHHHHHhCCeEEEEecCCCCCCCCH--HHHHHHHHHhccHhhcCC-EEEEECccH--HHHHHHHHHHHcCCCEEEEEcC
Confidence 34455544456777 99999999999 99999999877632 33 367899999 8999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc----CcEecc
Q psy14801 219 GSILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE----GLLVGG 286 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~----gi~~~~ 286 (404)
+.+......+....+.... ...... ....+ .......+++++ +|+..+ ..+.||+++. .+++..
T Consensus 101 ~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~-a~~~g~~~v~p~---~~~~~i~G~gtia~EI~eq~~~~D~vvvpv 176 (403)
T PRK08526 101 ATPLLKVSGTKALGAEVILKGDNYDEAYAFALEY-AKENNLTFIHPF---EDEEVMAGQGTIALEMLDEISDLDMVVVPV 176 (403)
T ss_pred CCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCCEeeCCC---CCHHHHhhhHHHHHHHHHhcCCCCEEEEec
Confidence 8753221111111111000 000000 00000 000001111221 122221 2345666653 488999
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------cc---ccc-----h---h---HHhhcCccCcH
Q psy14801 287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------TK---FIS-----D---E---WMIEKGFLDEA 338 (404)
Q Consensus 287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~~---~~~-----~---~---~~~~~~~~~~~ 338 (404)
|||++++|+..++|+.+|+.+|+.|+|.+...+. .+ ++. . . ...|..+.++|
T Consensus 177 GgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d 256 (403)
T PRK08526 177 GGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDD 256 (403)
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECH
Confidence 9999999999999999999999999997653220 00 110 1 0 12344456777
Q ss_pred HHHHHhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcC
Q psy14801 339 EELEEMI-------------HSGTAMHVACQAAKSLRPDQRCVVILAD 373 (404)
Q Consensus 339 ~~~~~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D 373 (404)
+++..++ |+++++++.++....+.++++||+|+|=
T Consensus 257 ~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsG 304 (403)
T PRK08526 257 EEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSG 304 (403)
T ss_pred HHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECC
Confidence 7665532 5566666665433334568899999975
No 142
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.48 E-value=1.5e-13 Score=131.21 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
++.+..+..+|+ +|+.||.+|.| +|.+..++.++.. .....||++++|| +|+++|+.++..|+++++++|...+
T Consensus 27 ~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~v~~p~~~~ 102 (317)
T TIGR02991 27 SLSELCGVPVHLKLEHRQTTGSFK--LRGATNAVLSLSDTQRAAGVVAASTGN--HGRALAYAAAEEGVRATICMSELVP 102 (317)
T ss_pred hhHHhhCCeEEEEeccCCCCCCcH--HHHHHHHHHhhhHhccCCeEEEECCCH--HHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 344333335666 89999999999 9999998876531 1122477899999 9999999999999999999999875
Q ss_pred ccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC----cEeccchhhHH
Q psy14801 222 LAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG----LLVGGSSGTAM 292 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g----i~~~~~tg~tl 292 (404)
......+......... ...... ..... .......+.+++.+....+.+ ..+.||++|.. +|+..|||+++
T Consensus 103 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~-~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~ 181 (317)
T TIGR02991 103 QNKVDEIRRLGAEVRIVGRSQDDAQEEVERL-VADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLA 181 (317)
T ss_pred HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEeeCCCCChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHH
Confidence 3211111111111100 000000 00000 000011222333232222332 24567776643 78888999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCc--------------cc---c----ccc--hh--H-----HhhcCccCcHHHHH
Q psy14801 293 HVACQAAKSLRPDQRCVVILADGVRNY--------------LT---K----FIS--DE--W-----MIEKGFLDEAEELE 342 (404)
Q Consensus 293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~---~----~~~--~~--~-----~~~~~~~~~~~~~~ 342 (404)
+|+.+++|++.|+.+|+.|+|.+.... .+ . .+. .. + ..|..+.++|+++.
T Consensus 182 ~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~ 261 (317)
T TIGR02991 182 SGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIA 261 (317)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHH
Confidence 999999999999999999999643111 00 0 111 11 1 23344667887776
Q ss_pred Hhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801 343 EMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR 376 (404)
Q Consensus 343 ~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~ 376 (404)
.++ |+++++++.+. ..+.++++||+|+|-++.
T Consensus 262 ~a~~~l~~~~g~~ve~s~a~~~Aal~~--~~~~~~~~vvvvltG~n~ 306 (317)
T TIGR02991 262 AGIRHAYAEEREIVEGAGAVGIAALLA--GKIKNPGPCAVIVSGRNI 306 (317)
T ss_pred HHHHHHHHhCCcEEcchHHHHHHHHHc--CccccCCcEEEEeCCCCC
Confidence 643 44445544432 223457789999997763
No 143
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.46 E-value=1.9e-13 Score=134.50 Aligned_cols=231 Identities=11% Similarity=0.030 Sum_probs=135.7
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---C
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---Q 226 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---~ 226 (404)
.+|+ .|+.||++|.| +|.|..++.++.+ ..+.+|++.|+|| +|.++|+.++..|+++++++|..+..... .
T Consensus 86 ~Iy~K~E~~nPtGS~K--~R~A~~~~~~a~~~G~~~~vtetssGN--~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~ 161 (419)
T TIGR01415 86 RIYYKYESVSPTGSHK--INTAIAQAYYAKIEGAKRLVTETGAGQ--WGSALSLAGALFGLECKVFMVRVSFNQKPYRKY 161 (419)
T ss_pred eEEEEECCCCCCCCcH--HHHHHHHHHHHHHcCCCeEEEecCchH--HHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHH
Confidence 4555 99999999988 9999988876653 2567888999999 99999999999999999999975421100 0
Q ss_pred CCCCCCCCCC----ccccc--------cC------------------CC-CcccccccCccccCcEEecChHHHHHHHHH
Q psy14801 227 SLNDVPENQI----SYNEV--------EG------------------IG-YSFAATTLDRNVIDQWGKCGDKDTFLMARR 275 (404)
Q Consensus 227 ~~~~~~~~~~----~~~~~--------~~------------------i~-~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~ 275 (404)
.+........ ..... ++ .+ ..++..+..+ ++-.+..+...|+++++..
T Consensus 162 ~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~~~~h~~~ig~Ei~~Ql~~ 240 (419)
T TIGR01415 162 LMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-HVLLHQTVIGLEAKKQMEE 240 (419)
T ss_pred HHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-HHHHHHHHHHHHHHHHHHh
Confidence 0011110000 00000 00 00 0011111100 0001112334455444432
Q ss_pred HH-HhcCcEeccchhhHHHHHHHHHHh--c--CCCCeEEEEecCCCCCccc-------------------cccchhH---
Q psy14801 276 LI-KSEGLLVGGSSGTAMHVACQAAKS--L--RPDQRCVVILADGVRNYLT-------------------KFISDEW--- 328 (404)
Q Consensus 276 l~-~~~gi~~~~~tg~tlag~~~~lk~--~--~~~~~vv~v~~~~~~~~~~-------------------~~~~~~~--- 328 (404)
.. .-+.++++.|||++++|+...+.+ . .++.+|++|++.+...+.. ..++.++
T Consensus 241 ~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~ 320 (419)
T TIGR01415 241 AGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPP 320 (419)
T ss_pred cCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCc
Confidence 11 124588899999999999854421 1 2478999999965321100 0011111
Q ss_pred ------------------Hhhc----CccCcHHHHHHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEc
Q psy14801 329 ------------------MIEK----GFLDEAEELEEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILA 372 (404)
Q Consensus 329 ------------------~~~~----~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~ 372 (404)
+.+. ...+++++++++ .|||++++++++.+++.. .++.+|++++
T Consensus 321 ~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~ 400 (419)
T TIGR01415 321 PIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFN 400 (419)
T ss_pred ceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEE
Confidence 1111 124677777663 399999999999998754 2677888899
Q ss_pred CCCcchhhc-cCCHHHH
Q psy14801 373 DGVRNYLTK-FISDEWM 388 (404)
Q Consensus 373 D~g~rYl~~-~~~~~w~ 388 (404)
++|..|++. .| ++|+
T Consensus 401 lsG~G~~d~~~y-~~~~ 416 (419)
T TIGR01415 401 LSGHGLLDLKAY-AKYL 416 (419)
T ss_pred cCCCCcCCHHHH-HHHh
Confidence 999999986 34 3444
No 144
>PRK12483 threonine dehydratase; Reviewed
Probab=99.46 E-value=4.2e-13 Score=135.00 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=136.5
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
..+++..+..+|+ .|+.||.+|.| +|.|+.++.++.. ... -||++++|| .|.++|+.++..|+++++|+|.+
T Consensus 44 ~~Ls~~~g~~IylK~E~lqptGSfK--~RGA~n~i~~l~~~~~~~-GVV~aSaGN--ha~gvA~aA~~lGi~~~IvmP~~ 118 (521)
T PRK12483 44 PNLSARLGNQVLLKREDLQPVFSFK--IRGAYNKMARLPAEQLAR-GVITASAGN--HAQGVALAAARLGVKAVIVMPRT 118 (521)
T ss_pred hhhhHhhCCEEEEEEcCCCCCCchH--HHHHHHHHHHhHHHHhcC-cEEEECCCH--HHHHHHHHHHHhCCCEEEEECCC
Confidence 3455544456777 89999999999 9999998876542 112 278889999 99999999999999999999998
Q ss_pred CcccccCCCCCCCCCCC--ccccccC--CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcEecc
Q psy14801 220 SILAQPQSLNDVPENQI--SYNEVEG--IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLLVGG 286 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~--~~~~~~~--i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~~~~ 286 (404)
++..........++... ....-+. ..... .......+++++ +|+..+ ..+.||+++. .+++..
T Consensus 119 tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~l-a~e~g~~~v~pf---dd~~viaGqgTig~EI~eQ~~~~~D~Vvvpv 194 (521)
T PRK12483 119 TPQLKVDGVRAHGGEVVLHGESFPDALAHALKL-AEEEGLTFVPPF---DDPDVIAGQGTVAMEILRQHPGPLDAIFVPV 194 (521)
T ss_pred CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCeeeCCC---CChHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 86422111111111100 0000000 00000 000001112221 122221 2245555543 488999
Q ss_pred chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc-----------c---c---c-----cchh-H-----HhhcCccCcH
Q psy14801 287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL-----------T---K---F-----ISDE-W-----MIEKGFLDEA 338 (404)
Q Consensus 287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~-----------~---~---~-----~~~~-~-----~~~~~~~~~~ 338 (404)
||||+++|+..++|+.+|+.+|+.|+|.+...+. + + + .++. | ..|..+.+++
T Consensus 195 GgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse 274 (521)
T PRK12483 195 GGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVST 274 (521)
T ss_pred CccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECH
Confidence 9999999999999999999999999997643221 0 0 0 1111 1 1234456777
Q ss_pred HHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEcCCC
Q psy14801 339 EELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILADGV 375 (404)
Q Consensus 339 ~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g 375 (404)
+++..++ |+|++++|++++.++.. ++++||+|++=++
T Consensus 275 ~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgN 325 (521)
T PRK12483 275 DELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGAN 325 (521)
T ss_pred HHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 7665532 78888888888876532 5789999877554
No 145
>PRK09224 threonine dehydratase; Reviewed
Probab=99.46 E-value=1.9e-13 Score=138.03 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=139.1
Q ss_pred HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
+..+++..+..+|+ .|..||.+|.| +|.|+.++.++... ...-||++|+|| .|.++|+.++..|+++++|+|..
T Consensus 26 ~~~Ls~~~g~~i~lK~E~lqptgSfK--~RgA~n~i~~l~~~~~~~gvV~aSaGN--ha~avA~aa~~lGi~~~IvmP~~ 101 (504)
T PRK09224 26 APKLSARLGNQVLLKREDLQPVFSFK--LRGAYNKMAQLTEEQLARGVITASAGN--HAQGVALSAARLGIKAVIVMPVT 101 (504)
T ss_pred hhHhHHHhCCEEEEEecCCCCCCCCh--HHHHHHHHHhhhHHhcCCEEEEECcCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 34455555556777 89999999999 99999999887521 122477889999 89999999999999999999998
Q ss_pred CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh-----cCcEeccchh
Q psy14801 220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS-----EGLLVGGSSG 289 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~-----~gi~~~~~tg 289 (404)
++......+......... ...... ..... .......++.++.+....+.. ..+.||+++ +.+++..|||
T Consensus 102 tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l-~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgG 180 (504)
T PRK09224 102 TPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIEL-AEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGG 180 (504)
T ss_pred CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccCCCCEEEEecChh
Confidence 754321111111111000 000000 00000 000001111222111111111 223455554 3488889999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc------cc-----cch-hH-----HhhcCccCcHHHH
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT------KF-----ISD-EW-----MIEKGFLDEAEEL 341 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~------~~-----~~~-~~-----~~~~~~~~~~~~~ 341 (404)
++++|+..++|+..|+.+|+.|++.+...+ .+ .+ .+. .| ..|..+.++|+++
T Consensus 181 GliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei 260 (504)
T PRK09224 181 GLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEI 260 (504)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHH
Confidence 999999999999999999999998654211 00 00 111 11 1234456777665
Q ss_pred HHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcc
Q psy14801 342 EEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRN 377 (404)
Q Consensus 342 ~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~r 377 (404)
..+ .|+|++++++++++++.. ++++||+|+|+++-.
T Consensus 261 ~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~ 310 (504)
T PRK09224 261 CAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANMN 310 (504)
T ss_pred HHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence 543 388888888888876532 488999999998743
No 146
>PLN02550 threonine dehydratase
Probab=99.45 E-value=4.7e-13 Score=135.49 Aligned_cols=226 Identities=15% Similarity=0.177 Sum_probs=140.8
Q ss_pred HHHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEc
Q psy14801 141 GAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216 (404)
Q Consensus 141 ~a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~ 216 (404)
....+++..+..+|+ .|+.||.+|.| +|.|+.++.++.. ..+ ||++++|| .|.++|+.++..|+++++|+
T Consensus 114 ~s~~LS~~~g~~IylK~E~lqptGSFK--~RGA~n~I~~L~~e~~~~G--VV~aSaGN--hAqgvA~aA~~lGika~Ivm 187 (591)
T PLN02550 114 LAKKLSERLGVKVLLKREDLQPVFSFK--LRGAYNMMAKLPKEQLDKG--VICSSAGN--HAQGVALSAQRLGCDAVIAM 187 (591)
T ss_pred hhHHhhHhhCCEEEEEEcCCCCCCcHH--HHHHHHHHHHHHHhcCCCC--EEEECCCH--HHHHHHHHHHHcCCCEEEEE
Confidence 355666666567777 89999999999 9999999988742 233 67789999 88999999999999999999
Q ss_pred CCCCcccccCCCCCCCCCCC--ccc--cccCCCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcE
Q psy14801 217 PFGSILAQPQSLNDVPENQI--SYN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLL 283 (404)
Q Consensus 217 p~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~ 283 (404)
|...+......+...++... ... ........+ .......++.++ +|+..+ ..+.||+++. .+|
T Consensus 188 P~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~l-a~e~g~~fi~pf---ddp~viaGqgTig~EI~eQl~~~~D~Vv 263 (591)
T PLN02550 188 PVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQR-ALEEGRTFIPPF---DHPDVIAGQGTVGMEIVRQHQGPLHAIF 263 (591)
T ss_pred CCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEECCC---CChHHHHHHHHHHHHHHHHcCCCCCEEE
Confidence 99886422111111111100 000 000000000 000001111211 233332 2245666653 388
Q ss_pred eccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc--cccchh----------H-----HhhcCcc
Q psy14801 284 VGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT--KFISDE----------W-----MIEKGFL 335 (404)
Q Consensus 284 ~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~--~~~~~~----------~-----~~~~~~~ 335 (404)
+..|+||+++|+..++|+.+|+.+|+.|++.+...+ +. ..+.|. + ..|..+.
T Consensus 264 vpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~ 343 (591)
T PLN02550 264 VPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVL 343 (591)
T ss_pred EEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 999999999999999999999999999999664221 00 011111 1 2244466
Q ss_pred CcHHHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEcCCCc
Q psy14801 336 DEAEELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILADGVR 376 (404)
Q Consensus 336 ~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~ 376 (404)
++++++...+ ++|++++|+++++++.. ++++||+|+|=++-
T Consensus 344 Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNi 398 (591)
T PLN02550 344 VSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANM 398 (591)
T ss_pred ECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence 7776665532 77888888888776422 67899999886543
No 147
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.45 E-value=4e-13 Score=129.45 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=134.9
Q ss_pred cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801 152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN 229 (404)
Q Consensus 152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~ 229 (404)
.+|+ +|+.||++|.| +|.+..++..+.++-...||+++||| +|+++|+.++..|+++++++|++ .+......+.
T Consensus 40 ~i~~K~E~~nptGSfK--dR~a~~~l~~a~~~g~~~vv~aSsGN--~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~ 115 (328)
T TIGR00260 40 NLYVLELFHNPTLSFK--DRGMAVALTKALELGNDTVLCASTGN--TGAAAAAYAGKAGVKVVILYPAGKISLGKLAQAL 115 (328)
T ss_pred cEEehhhccCCchhhH--hhhHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHH
Confidence 4666 99999999999 99999998877643334778899999 99999999999999999999997 4321110010
Q ss_pred CCCCCCC---cc-----ccccCCC---CcccccccC--ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHH
Q psy14801 230 DVPENQI---SY-----NEVEGIG---YSFAATTLD--RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVAC 296 (404)
Q Consensus 230 ~~~~~~~---~~-----~~~~~i~---~~~~~~~~~--~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~ 296 (404)
....... .. ..+..+. ..+.....+ ...... +.....|++++... -.-+.+++..|||++++|+.
T Consensus 116 ~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g-~~t~~~Ei~~q~~~-~~~d~iv~~vG~GG~~~G~~ 193 (328)
T TIGR00260 116 GYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEG-QKTYAFEAVEQLGW-EAPDKVVVPVPNSGNFGAIL 193 (328)
T ss_pred hcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCCCeEeee-ehhHHHHHHHHhCC-CCCCEEEEECCCcchHHHHH
Confidence 0000000 00 0000000 001001111 111111 23445556555432 01245889999999999999
Q ss_pred HHHHhc-------CCCCeEEEEecCCCCCccc--------------cccch------------hH-----HhhcCccCcH
Q psy14801 297 QAAKSL-------RPDQRCVVILADGVRNYLT--------------KFISD------------EW-----MIEKGFLDEA 338 (404)
Q Consensus 297 ~~lk~~-------~~~~~vv~v~~~~~~~~~~--------------~~~~~------------~~-----~~~~~~~~~~ 338 (404)
..+++. .| ++++|++.+...... ..+.+ .+ ..+..+.++|
T Consensus 194 ~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d 271 (328)
T TIGR00260 194 KGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSD 271 (328)
T ss_pred HHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCH
Confidence 999873 34 799999866421110 00000 00 1122345677
Q ss_pred HHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801 339 EELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL 379 (404)
Q Consensus 339 ~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl 379 (404)
+++..+ .|||++++++++++++ +.++++||+++|-+|.++.
T Consensus 272 ~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~ 327 (328)
T TIGR00260 272 EEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDP 327 (328)
T ss_pred HHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCC
Confidence 766553 3899999999998874 4578899999999998763
No 148
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.44 E-value=8.7e-13 Score=125.81 Aligned_cols=218 Identities=10% Similarity=-0.039 Sum_probs=129.4
Q ss_pred CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCCcCEEEEcc--CCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc-
Q psy14801 151 NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGKVDMIVLGC--GTGGTASGIGRKIKEKCPSCKLVGADPFGSILA- 223 (404)
Q Consensus 151 ~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~- 223 (404)
..+|+ +|+.||. ++.| +|.+..|+.++..+-...|+++ ++|| +|+++|+.++..|+++++|+|...+..
T Consensus 17 ~~l~~K~E~~np~gsfgs~K--~R~~~~~l~~a~~~g~~~vv~~ggs~GN--~g~alA~~a~~~G~~~~i~v~~~~~~~~ 92 (307)
T cd06449 17 VEIYAKRDDCNSGLAFGGNK--IRKLEYLLPDALAKGADTLVTVGGIQSN--HTRQVAAVAAKLGLKCVLVQENWVPYSD 92 (307)
T ss_pred CcEEEecccccCCCCccchH--HHHHHHHHHHHHHcCCCEEEECCCchhH--HHHHHHHHHHHcCCeEEEEecCCCCccc
Confidence 35666 8999997 4568 9999999988764322345555 4889 999999999999999999999876521
Q ss_pred -------ccCCCCCCCCCCCc-cccc-cCCCC------cccccccC-cc-ccCcEE-ecChHHHH-HHHHHHHHh-----
Q psy14801 224 -------QPQSLNDVPENQIS-YNEV-EGIGY------SFAATTLD-RN-VIDQWG-KCGDKDTF-LMARRLIKS----- 279 (404)
Q Consensus 224 -------~~~~~~~~~~~~~~-~~~~-~~i~~------~~~~~~~~-~~-~~~~~~-~v~d~e~~-~~~~~l~~~----- 279 (404)
....+......... .... .+... ..+..... .. +.++.. +..+.+.+ ..+.||+++
T Consensus 93 ~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~ 172 (307)
T cd06449 93 AVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELG 172 (307)
T ss_pred ccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 00001111111000 0000 00000 00000000 00 011111 22222221 233444443
Q ss_pred ---cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc-------------cc---------cchhHHhhcCc
Q psy14801 280 ---EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT-------------KF---------ISDEWMIEKGF 334 (404)
Q Consensus 280 ---~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~-------------~~---------~~~~~~~~~~~ 334 (404)
+.+++..|||++++|+.+.+++..++.+|+.|++.+...+.. .+ +.++ ..+..+
T Consensus 173 ~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~ 251 (307)
T cd06449 173 FKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDD-YAAPEY 251 (307)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecC-cccCCC
Confidence 448999999999999999999999999999999976432210 00 0111 123345
Q ss_pred cCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcC
Q psy14801 335 LDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILAD 373 (404)
Q Consensus 335 ~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D 373 (404)
.++|+++..+ . |||++++++.+++++ ++++++||+|...
T Consensus 252 ~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TG 306 (307)
T cd06449 252 GIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLG 306 (307)
T ss_pred CCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Confidence 5666665552 2 799999999999886 4678899998754
No 149
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.44 E-value=1.5e-12 Score=124.54 Aligned_cols=226 Identities=12% Similarity=0.004 Sum_probs=130.8
Q ss_pred HHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801 144 RIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKLVGADP 217 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi~V~p 217 (404)
++.+..+..+|+ .|+.||. ++.| +|.+..|++.+.++ .+ .||++ ++|| +|+++|+.++..|+++++|+|
T Consensus 15 ~l~~~~g~~l~~K~E~l~p~~~gs~K--~R~~~~~l~~a~~~g~~-~vv~~g~ssGN--~g~alA~~a~~~G~~~~ivvp 89 (311)
T TIGR01275 15 RISREIGAEIYIKRDDLTGLGIGGNK--IRKLEYLLADALSKGAD-TVITVGAIQSN--HARATALAAKKLGLDAVLVLR 89 (311)
T ss_pred hhhhhcCCeEEEEeccCcCCCCCchh--HHHHHHHHHHHHHcCCC-EEEEcCCchhH--HHHHHHHHHHHhCCceEEEec
Confidence 344433345666 8999996 7888 99999999887643 34 45565 4599 999999999999999999999
Q ss_pred CCCc-ccccCCCCCCCCCCC--c--ccc-ccCCCCccc---cccc-Cc-cccCcEEecChHHHH-HHHHHHHHh------
Q psy14801 218 FGSI-LAQPQSLNDVPENQI--S--YNE-VEGIGYSFA---ATTL-DR-NVIDQWGKCGDKDTF-LMARRLIKS------ 279 (404)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~--~--~~~-~~~i~~~~~---~~~~-~~-~~~~~~~~v~d~e~~-~~~~~l~~~------ 279 (404)
.... ......+........ . .+. ......... .... +. .++.++.+..+.+.+ .++.||+++
T Consensus 90 ~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~~~~~ 169 (311)
T TIGR01275 90 EKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLESEVK 169 (311)
T ss_pred CCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8642 110000011111100 0 000 000000000 0000 00 112233333333332 234555554
Q ss_pred -cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC----Ccc----c---cccch----hH-----HhhcCccCcH
Q psy14801 280 -EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR----NYL----T---KFISD----EW-----MIEKGFLDEA 338 (404)
Q Consensus 280 -~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~----~~~----~---~~~~~----~~-----~~~~~~~~~~ 338 (404)
+.+|++.|||++++|+.+.+|+++|+.+|+.|++.... .+. + ..+.. .| ..+..+.++|
T Consensus 170 ~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d 249 (311)
T TIGR01275 170 FDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPT 249 (311)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCC
Confidence 35899999999999999999999999999989864321 000 0 01110 01 1122355666
Q ss_pred HHHHHh-------------c-cchhHHHHHHHHHHhcC-CCCeEEEEEcCC
Q psy14801 339 EELEEM-------------I-HSGTAMHVACQAAKSLR-PDQRCVVILADG 374 (404)
Q Consensus 339 ~~~~~g-------------~-SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~ 374 (404)
+++..+ . |||++++++++++++.+ ++++||+|+|-+
T Consensus 250 ~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG 300 (311)
T TIGR01275 250 SEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGG 300 (311)
T ss_pred HHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 665553 2 68999999999876543 467899999865
No 150
>PRK06450 threonine synthase; Validated
Probab=99.42 E-value=5.1e-13 Score=128.34 Aligned_cols=214 Identities=13% Similarity=0.074 Sum_probs=131.3
Q ss_pred Eee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801 153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV 231 (404)
Q Consensus 153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~ 231 (404)
+|+ +|+.||++|.| ||.+.-++.++.+.-...|++++||| +|+++|..++..|+++++++|.+.+......+...
T Consensus 67 l~~K~E~~nPTGSfK--DRga~~~i~~a~~~g~~~vv~aSsGN--~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~ 142 (338)
T PRK06450 67 IWFKLDFLNPTGSYK--DRGSVTLISYLAEKGIKQISEDSSGN--AGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY 142 (338)
T ss_pred EEEEecCCCCcCCCH--HHHHHHHHHHHHHcCCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc
Confidence 555 99999999999 99999998887643334789999999 99999999999999999999998754322111111
Q ss_pred CCCCCc-cccccCCCCcccccccCccccCcEEecChHHHHH-HHHHHHHhc------CcEeccchhhHHHHHHHHHHhcC
Q psy14801 232 PENQIS-YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFL-MARRLIKSE------GLLVGGSSGTAMHVACQAAKSLR 303 (404)
Q Consensus 232 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~-~~~~l~~~~------gi~~~~~tg~tlag~~~~lk~~~ 303 (404)
...... ....+... . ........+..++.+....|-+. .+.||++|. .+++..|+|++++|+.+.++++.
T Consensus 143 GA~vi~v~~~~~~~~-~-~a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~ 220 (338)
T PRK06450 143 GAEVVRVRGSREDVA-K-AAENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLL 220 (338)
T ss_pred CCEEEEECCCHHHHH-H-HHHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHH
Confidence 111100 00000000 0 00000111222333333334433 345676654 37888899999999999999864
Q ss_pred C------CCeEEEEecCCCCCcc-------------ccccc-----------h---hHHh--hcCccCcHHHHHHh----
Q psy14801 304 P------DQRCVVILADGVRNYL-------------TKFIS-----------D---EWMI--EKGFLDEAEELEEM---- 344 (404)
Q Consensus 304 ~------~~~vv~v~~~~~~~~~-------------~~~~~-----------~---~~~~--~~~~~~~~~~~~~g---- 344 (404)
+ ..++++|++.+..... ...+. + ..+. +..+.++|+++.++
T Consensus 221 ~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~g~~v~V~d~ei~~a~~~L 300 (338)
T PRK06450 221 DSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKEL 300 (338)
T ss_pred hcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHHHHhcCcEEEECHHHHHHHHHHH
Confidence 3 2589999996631110 00010 1 0111 13355777766553
Q ss_pred --------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcc
Q psy14801 345 --------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRN 377 (404)
Q Consensus 345 --------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~r 377 (404)
.|||++++++.++ ++.+||++++-+|.|
T Consensus 301 a~~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK 336 (338)
T PRK06450 301 AKKGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLK 336 (338)
T ss_pred HHcCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCcc
Confidence 2777888777765 347899999998865
No 151
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.39 E-value=3.1e-12 Score=123.20 Aligned_cols=226 Identities=10% Similarity=0.026 Sum_probs=130.1
Q ss_pred HHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEEEccC--CChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801 144 RIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIVLGCG--TGGTASGIGRKIKEKCPSCKLVGADP 217 (404)
Q Consensus 144 ~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vvv~~g--sG~~~~Gi~la~~~~~~~~~vi~V~p 217 (404)
.+.+..+..+|+ .|+.||. ++.| +|.+..++.++.+. .+. ||.+| +|| +|+++|+.++..|+++++|+|
T Consensus 23 ~l~~~~g~~i~~K~E~lnp~g~gs~K--~R~~~~~l~~a~~~g~~~-vvt~g~s~gN--~g~alA~~a~~~G~~~~i~vp 97 (331)
T PRK03910 23 RLSAALGPDIYIKRDDLTGLALGGNK--TRKLEFLLADALAQGADT-LITAGAIQSN--HARQTAAAAAKLGLKCVLLLE 97 (331)
T ss_pred hhhHhhCCcEEEEeccCCCCCCCchH--HHHHHHHHHHHHHcCCCE-EEEcCcchhH--HHHHHHHHHHHhCCcEEEEEc
Confidence 344433345666 8999996 4788 99999999887633 344 44554 489 999999999999999999999
Q ss_pred CCCccccc--------CCCCCCCCCCCccccccCCCC---cc---cccccC--ccccCcEEecChHHHH-HHHHHHHHh-
Q psy14801 218 FGSILAQP--------QSLNDVPENQISYNEVEGIGY---SF---AATTLD--RNVIDQWGKCGDKDTF-LMARRLIKS- 279 (404)
Q Consensus 218 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~---~~---~~~~~~--~~~~~~~~~v~d~e~~-~~~~~l~~~- 279 (404)
...+.... ..+.............++... .. +..+.. ..+..++.+.-+.+.+ ..+.||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~ 177 (331)
T PRK03910 98 NPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQL 177 (331)
T ss_pred CCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 87653211 001111111000000000000 00 000000 0011222222222332 233444433
Q ss_pred -------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-------c----c------c-hh--H---H
Q psy14801 280 -------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-------F----I------S-DE--W---M 329 (404)
Q Consensus 280 -------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-------~----~------~-~~--~---~ 329 (404)
+.+|+..|||++++|+.+.+++.+++.+|+.|++.++..+... . + . .. + .
T Consensus 178 ~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~ 257 (331)
T PRK03910 178 AEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDY 257 (331)
T ss_pred HhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCC
Confidence 3588999999999999999999999999999999764322110 0 0 0 00 1 1
Q ss_pred hhcCccCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcCCC
Q psy14801 330 IEKGFLDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILADGV 375 (404)
Q Consensus 330 ~~~~~~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g 375 (404)
.+..+.++|++++.+ . |||++++++++++++ +.++++||+| .++|
T Consensus 258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i-~tGG 318 (331)
T PRK03910 258 VGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFI-HTGG 318 (331)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEE-ECCC
Confidence 222355666666553 2 589999999998765 3456788877 5666
No 152
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.36 E-value=4.9e-12 Score=122.16 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=129.4
Q ss_pred HHHHHhCC--CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEEE
Q psy14801 143 HRIASQMK--NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKLV 213 (404)
Q Consensus 143 ~~l~~~~~--~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi 213 (404)
.++.+..+ ..+|+ +|+.||. ++.| +|.+..+++++.++ .+ .|+++ ++|| +|+++|+.++..|++++
T Consensus 22 ~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K--~R~~~~~l~~a~~~G~~-~vvs~G~s~GN--~g~alA~aa~~~G~~~~ 96 (337)
T PRK12390 22 KRLSAHLGGKVELYAKREDCNSGLAFGGNK--TRKLEYLVPDALAQGAD-TLVSIGGVQSN--HTRQVAAVAAHLGMKCV 96 (337)
T ss_pred HHHHHHhCCCCeEEEEeCCCCCCCCccchh--HHHHHHHHHHHHHcCCC-EEEEeCCCccH--HHHHHHHHHHHcCCeEE
Confidence 34444433 34666 8999987 5668 99999999988643 44 44555 6799 99999999999999999
Q ss_pred EEcCCCCccc-----ccC---CCCCCCCCCCcccc-cc-CCCCc--ccccccCccccCcEEecChHH--------HHHHH
Q psy14801 214 GADPFGSILA-----QPQ---SLNDVPENQISYNE-VE-GIGYS--FAATTLDRNVIDQWGKCGDKD--------TFLMA 273 (404)
Q Consensus 214 ~V~p~~~~~~-----~~~---~~~~~~~~~~~~~~-~~-~i~~~--~~~~~~~~~~~~~~~~v~d~e--------~~~~~ 273 (404)
+|++...+.. ... .+............ .. +.... ............+|....+.+ ...++
T Consensus 97 iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a 176 (337)
T PRK12390 97 LVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFA 176 (337)
T ss_pred EEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHH
Confidence 9966543210 000 00111111000000 00 00000 000000000011221211111 12334
Q ss_pred HHHHHh--------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-----------c--cc-----hh
Q psy14801 274 RRLIKS--------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-----------F--IS-----DE 327 (404)
Q Consensus 274 ~~l~~~--------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-----------~--~~-----~~ 327 (404)
.||+++ +.+++..|||++++|+.+.+++..|+.+|++|++.+...+... . +. ..
T Consensus 177 ~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 256 (337)
T PRK12390 177 EEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDD 256 (337)
T ss_pred HHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhh
Confidence 555553 4599999999999999999999999999999999664322110 0 00 11
Q ss_pred H-----HhhcCccCcHHHHHHhc--------------cchhHHHHHHHHHHh--cCCCCeEEEEEcC
Q psy14801 328 W-----MIEKGFLDEAEELEEMI--------------HSGTAMHVACQAAKS--LRPDQRCVVILAD 373 (404)
Q Consensus 328 ~-----~~~~~~~~~~~~~~~g~--------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D 373 (404)
| ..+..+.++|+++.+++ +||++++++++++++ ++++.+||++=..
T Consensus 257 ~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htg 323 (337)
T PRK12390 257 VVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLG 323 (337)
T ss_pred EEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Confidence 1 12344556766665532 499999999999975 5677787766443
No 153
>PRK08813 threonine dehydratase; Provisional
Probab=99.36 E-value=2.3e-12 Score=123.59 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=129.5
Q ss_pred Eee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC
Q psy14801 153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND 230 (404)
Q Consensus 153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~ 230 (404)
+|+ +|+.||++|.| +|.|+.++.++.+. ...-||++++|| +|+++|+.++..|+++++|+|.+.+......+..
T Consensus 50 v~lK~E~~nptGSfK--~RgA~~~l~~a~~~~~~~~VV~aSsGN--~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~ 125 (349)
T PRK08813 50 VWLKLENLQRTGSYK--VRGALNALLAGLERGDERPVICASAGN--HAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAH 125 (349)
T ss_pred EEEEecCCCCcCCCH--HHHHHHHHHHHHHcCCCCeEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH
Confidence 555 89999999999 99999999887643 222488999999 9999999999999999999999875432211111
Q ss_pred CCCCCCc--cc--cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHh--cCcEeccchhhHHHHHHHHHHhcC
Q psy14801 231 VPENQIS--YN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS--EGLLVGGSSGTAMHVACQAAKSLR 303 (404)
Q Consensus 231 ~~~~~~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~--~gi~~~~~tg~tlag~~~~lk~~~ 303 (404)
....... .. ........+ .......+++++.+....+-+ ..+.||+++ +.+++..|+|+.++|+.+++|+
T Consensus 126 ~GAeVv~~g~~~~~a~~~a~~l-a~~~g~~~v~~~~np~~i~G~~Tig~EI~e~~pD~VvvpvGgGGliaGia~~lk~-- 202 (349)
T PRK08813 126 WGATVRQHGNSYDEAYAFAREL-ADQNGYRFLSAFDDPDVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKS-- 202 (349)
T ss_pred cCCEEEEECCCHHHHHHHHHHH-HHhcCCEEcCccCChHHHHHHHHHHHHHHcCCCCEEEEEeCccHHHHHHHHHHhc--
Confidence 1111100 00 000000000 000111223333222222222 235666664 3488888999999999999996
Q ss_pred CCCeEEEEecCCCCCc----------------cccccc------hhH-----HhhcCccCcHHHHHHhc-----------
Q psy14801 304 PDQRCVVILADGVRNY----------------LTKFIS------DEW-----MIEKGFLDEAEELEEMI----------- 345 (404)
Q Consensus 304 ~~~~vv~v~~~~~~~~----------------~~~~~~------~~~-----~~~~~~~~~~~~~~~g~----------- 345 (404)
++.+|+.|++.+...+ +-.++. ..+ ..|..+.++|+++..++
T Consensus 203 ~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~v 282 (349)
T PRK08813 203 QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIA 282 (349)
T ss_pred CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEE
Confidence 4789999999764211 000110 000 22344567887776643
Q ss_pred --cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801 346 --HSGTAMHVACQAAKSLRPDQRCVVILADGVR 376 (404)
Q Consensus 346 --SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~ 376 (404)
|+|+++++++++ .+++||+|+|-+.-
T Consensus 283 E~aga~alAa~~~~-----~~~~v~~vlsGgN~ 310 (349)
T PRK08813 283 EGAGALALAAGRRV-----SGKRKCAVVSGGNI 310 (349)
T ss_pred EEcHHHHHHHHHHh-----CCCCEEEEECCCCC
Confidence 777777776542 46789999987653
No 154
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.36 E-value=7.1e-12 Score=120.54 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=131.0
Q ss_pred HHHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEE-EccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIV-LGCGTGGTASGIGRKIKEKCPSCKLVGADP 217 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vv-v~~gsG~~~~Gi~la~~~~~~~~~vi~V~p 217 (404)
..+.+..+..+|+ .|+.||. ++.| +|.+..+++++.++ .+.+| +++++|| +|+++|+.++..|+++++|+|
T Consensus 28 ~~l~~~~g~~v~~K~E~l~~~~~gg~K--~R~~~~~l~~a~~~G~~~vv~~~~ssGN--~g~alA~~a~~~G~~~~ivvp 103 (329)
T PRK14045 28 PNISRELGADVYVKRDDLTGLGIGGNK--IRKLEYLLGDALSRGADVVITVGAVHSN--HAFVTGLAAKKLGLDAVLVLR 103 (329)
T ss_pred hhhHHHhCCeEEEEcccccCCCCCcch--HHHHHhHHHHHHHcCCCEEEEeCccHHH--HHHHHHHHHHHcCCeEEEEEe
Confidence 3444433345666 8899875 5678 99999999887633 34444 4899999 999999999999999999999
Q ss_pred CCCccccc-CCCCCCCCCCCc-----ccc----ccCCCCcccccccCcc-ccCcEEecChHHHH-HHHHHHHHh------
Q psy14801 218 FGSILAQP-QSLNDVPENQIS-----YNE----VEGIGYSFAATTLDRN-VIDQWGKCGDKDTF-LMARRLIKS------ 279 (404)
Q Consensus 218 ~~~~~~~~-~~~~~~~~~~~~-----~~~----~~~i~~~~~~~~~~~~-~~~~~~~v~d~e~~-~~~~~l~~~------ 279 (404)
...+.... ............ ... .......+........ +..++.+..+.+.+ ..+.||+++
T Consensus 104 ~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~ 183 (329)
T PRK14045 104 GKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGV 183 (329)
T ss_pred CCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 76431100 000011100000 000 0000000000000001 11222222233332 333355544
Q ss_pred --cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-------------c---------cchhHHhhcCcc
Q psy14801 280 --EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-------------F---------ISDEWMIEKGFL 335 (404)
Q Consensus 280 --~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-------------~---------~~~~~~~~~~~~ 335 (404)
+.++++.|||++++|+.+.+++.+|+.+|+.|++.+...++.. . +.|..+ +....
T Consensus 184 ~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~-~~y~~ 262 (329)
T PRK14045 184 RFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDYSF-GEYGK 262 (329)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEeccccc-CCCCC
Confidence 3389999999999999999999999999999999652221111 0 111111 22223
Q ss_pred CcHHHHHH-------------h-ccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801 336 DEAEELEE-------------M-IHSGTAMHVACQAAKSLRPDQRCVVILADG 374 (404)
Q Consensus 336 ~~~~~~~~-------------g-~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~ 374 (404)
+++ ++++ + .|||.+++++++++++.+.+++||+|..-+
T Consensus 263 ~~~-e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG 314 (329)
T PRK14045 263 ITK-EVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGG 314 (329)
T ss_pred CCH-HHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 443 3333 3 399999999999999865578898887654
No 155
>PRK02991 D-serine dehydratase; Provisional
Probab=99.34 E-value=3.2e-12 Score=126.42 Aligned_cols=224 Identities=12% Similarity=0.051 Sum_probs=134.5
Q ss_pred CcEee-cCCCCC-CChhhHHhhHHHHHHHHhC-----C----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801 151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDTG-----G----KVD-----------------MIVLGCGTGGTASGIGRK 202 (404)
Q Consensus 151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~~-----~----~~~-----------------~vvv~~gsG~~~~Gi~la 202 (404)
..+|+ +|+.|| +||.| +|.|+.++.++. + .|+ ..||+++||| +|+++|
T Consensus 98 ~~V~lK~E~~np~tGSFK--~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN--~G~alA 173 (441)
T PRK02991 98 GRLLLKKDSHLPISGSIK--ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGN--LGLSIG 173 (441)
T ss_pred ceEEEEEcCCCCCcCChH--HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcH--HHHHHH
Confidence 35666 999999 89999 999988876531 1 122 2689999999 999999
Q ss_pred HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc--ccc--ccCCCCcccccccCccccCcEEecChHHH---H-HHHH
Q psy14801 203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS--YNE--VEGIGYSFAATTLDRNVIDQWGKCGDKDT---F-LMAR 274 (404)
Q Consensus 203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~~~~~~~~~~~~~~~v~d~e~---~-~~~~ 274 (404)
+.++..|+++++|+|++.+......+...+..... ... ............-...+++++ +++.. + ..+.
T Consensus 174 ~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~---~~~~~iaG~~Tig~ 250 (441)
T PRK02991 174 IMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDE---NSRTLFLGYAVAGL 250 (441)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCC---CchhHHHhHHHHHH
Confidence 99999999999999998864332222221111100 000 000000000000000111221 11122 1 2345
Q ss_pred HHHHhcC-------------cEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcc------------ccc-----
Q psy14801 275 RLIKSEG-------------LLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYL------------TKF----- 323 (404)
Q Consensus 275 ~l~~~~g-------------i~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~------------~~~----- 323 (404)
||+++.+ +++..|+|++++|+.+.+|+. .++.+|+.|+|.+...+. ...
T Consensus 251 EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~ 330 (441)
T PRK02991 251 RLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDN 330 (441)
T ss_pred HHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCC
Confidence 5555432 567778999999999999996 688999999996642110 000
Q ss_pred --c---------ch-hH-----HhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--------cC---
Q psy14801 324 --I---------SD-EW-----MIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--------LR--- 362 (404)
Q Consensus 324 --~---------~~-~~-----~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--------~~--- 362 (404)
+ .. .| ..+..+.++|+++.++ .|+|++++++.+++++ +.
T Consensus 331 ~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~ 410 (441)
T PRK02991 331 LTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQL 410 (441)
T ss_pred cchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCcccc
Confidence 0 00 01 1233456788777663 3889999998876552 22
Q ss_pred CCCeEEEEEcCCCcchhhc
Q psy14801 363 PDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 363 ~~~~iv~i~~D~g~rYl~~ 381 (404)
++++||++.|=+...+...
T Consensus 411 ~~~~vv~~~~gg~~~~~~~ 429 (441)
T PRK02991 411 KNATHLVWATGGSMVPEEE 429 (441)
T ss_pred CCCEEEEEECCCCCCCHHH
Confidence 5789999999876665553
No 156
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.33 E-value=3.6e-12 Score=125.53 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=121.3
Q ss_pred CcEee-cCCCCC-CChhhHHhhHHHHHHHHh-----CC----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801 151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDT-----GG----KVD-----------------MIVLGCGTGGTASGIGRK 202 (404)
Q Consensus 151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~-----~~----~~~-----------------~vvv~~gsG~~~~Gi~la 202 (404)
+.+|+ .|+.|| +||+| +|.|..++.++ .+ .|+ ..||+++||| +|+++|
T Consensus 93 ~~v~lKlE~~nP~tGSfK--dRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN--~G~slA 168 (431)
T TIGR02035 93 GRLLLKMDSHLPISGSIK--ARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGN--LGLSIG 168 (431)
T ss_pred ceEEEEecccCCccCCcH--HHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccH--HHHHHH
Confidence 45776 899999 99999 99999887642 11 122 3789999999 999999
Q ss_pred HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCC--c-cc-----c----ccCCCCcccccccCccccCcEEecChHHHH
Q psy14801 203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQI--S-YN-----E----VEGIGYSFAATTLDRNVIDQWGKCGDKDTF 270 (404)
Q Consensus 203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~--~-~~-----~----~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~ 270 (404)
+.++..|+++++|+|++.+......+...+.... . .+ . ....+..++.++.+..++..++...
T Consensus 169 ~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~~n~~n~~aG~~T~----- 243 (431)
T TIGR02035 169 IISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDDENSRNLFLGYAVA----- 243 (431)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCCCCcccHHhhHHHH-----
Confidence 9999999999999999886432222221111100 0 00 0 0000011111111111111222333
Q ss_pred HHHHHHHHhc-------------CcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcc------------cccc
Q psy14801 271 LMARRLIKSE-------------GLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYL------------TKFI 324 (404)
Q Consensus 271 ~~~~~l~~~~-------------gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~------------~~~~ 324 (404)
+.||+++. .+++-.|+|++++|+.+.+|++ +++.+|++|+|.+...+. .+.+
T Consensus 244 --g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~ 321 (431)
T TIGR02035 244 --ASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDI 321 (431)
T ss_pred --HHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCcccccccc
Confidence 44444443 2356667889999999999996 789999999996642110 0000
Q ss_pred ----------------c---hhH---HhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHh
Q psy14801 325 ----------------S---DEW---MIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKS 360 (404)
Q Consensus 325 ----------------~---~~~---~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~ 360 (404)
. ..+ ..|..+.++|+++..+ .|||++++++.++++.
T Consensus 322 g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~ 392 (431)
T TIGR02035 322 GIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKY 392 (431)
T ss_pred CCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhh
Confidence 0 001 2344456788877664 3899999999888765
No 157
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.32 E-value=1.1e-12 Score=125.25 Aligned_cols=219 Identities=18% Similarity=0.162 Sum_probs=134.1
Q ss_pred HhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801 147 SQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP 225 (404)
Q Consensus 147 ~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~ 225 (404)
+..+..+|+ +|..||.++.| +|.+..++.++.++....|+.+++|| +|.++|..++..|++++++.|.+.+....
T Consensus 20 ~~~~~~i~~K~E~~~ptgs~K--~R~a~~~l~~a~~~~~~~vv~assGN--~g~a~A~~a~~~g~~~~i~~p~~~~~~~~ 95 (306)
T PF00291_consen 20 ELGGANIYLKREDLNPTGSFK--DRGAYYLLSRAKEKGGRTVVGASSGN--HGRALAYAAARLGLKCTIVVPEDVSPEKL 95 (306)
T ss_dssp HCTTSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTTSEEEEESSSH--HHHHHHHHHHHHTCEEEEEEETTSHHHHH
T ss_pred hccCCeEEEEECCCCCcCCcc--cccchhhhhhccccccceeeeeccCC--ceehhhhhhhhccccceeeeccccccccc
Confidence 334456776 89999999999 99999999988544344568999999 88899988888899999999998643211
Q ss_pred CCCCCCCCCCC-cccccc---CCCCcccccc---cCcc--ccCcEEecChHHHH----HHHHHHHHhcC------cEecc
Q psy14801 226 QSLNDVPENQI-SYNEVE---GIGYSFAATT---LDRN--VIDQWGKCGDKDTF----LMARRLIKSEG------LLVGG 286 (404)
Q Consensus 226 ~~~~~~~~~~~-~~~~~~---~i~~~~~~~~---~~~~--~~~~~~~v~d~e~~----~~~~~l~~~~g------i~~~~ 286 (404)
..+........ ...... .......... .... ..+++ +++... ....|++++.+ +++..
T Consensus 96 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~Ei~~q~~~~d~d~vvv~~ 172 (306)
T PF00291_consen 96 KQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGELNQY---NNPNVIAGYATIGLEIYEQLGKPDPDYVVVPV 172 (306)
T ss_dssp HHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTEESTT---TSHHHHHHHHHHHHHHHHHHTTESESEEEEEE
T ss_pred cceeeecceEEEccccccccccccccccccccccccccccccCcc---cchhhhhhhhhcchhcccccccccceEEEecC
Confidence 11111111000 000000 0000000000 0000 01122 333332 33456666652 78888
Q ss_pred chhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcc-----------c-----cccc------h----hHHhhc---Ccc
Q psy14801 287 SSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL-----------T-----KFIS------D----EWMIEK---GFL 335 (404)
Q Consensus 287 ~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~-----------~-----~~~~------~----~~~~~~---~~~ 335 (404)
|||++++|+.+++++ . |..++++|++.+...+. + ..+. . .++.+. .+.
T Consensus 173 GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T PF00291_consen 173 GTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVG 251 (306)
T ss_dssp SSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEE
T ss_pred CchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccc
Confidence 999999999999999 7 89999999996541110 0 0111 0 112221 245
Q ss_pred CcHHHHHHh-------------ccchhHHHHHHHHHHhc----CCCCeEEEEEcC
Q psy14801 336 DEAEELEEM-------------IHSGTAMHVACQAAKSL----RPDQRCVVILAD 373 (404)
Q Consensus 336 ~~~~~~~~g-------------~SsGa~~~~a~~~~~~~----~~~~~iv~i~~D 373 (404)
++|+++.+. .|++++++++++++++. +++++||+|+||
T Consensus 252 v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 252 VSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp EEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred cchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 677666553 38899999999998875 578999999986
No 158
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.32 E-value=1.8e-11 Score=118.22 Aligned_cols=229 Identities=10% Similarity=0.001 Sum_probs=132.2
Q ss_pred HHHHHHhCC--CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEE
Q psy14801 142 AHRIASQMK--NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKL 212 (404)
Q Consensus 142 a~~l~~~~~--~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~v 212 (404)
..++++..+ ..+|+ .|+.||. ++.| +|.+..++.++..+ .. .|++. ++|| +|+++|+.++..|+++
T Consensus 20 ~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K--~R~~~~~l~~a~~~G~~-~vvs~ggs~gN--~g~alA~~a~~~Gl~~ 94 (337)
T TIGR01274 20 LPRLSQHLGGKVTLYAKREDCNSGLAFGGNK--TRKLEYLIPDAQAQGCT-TLVSIGGIQSN--QTRQVAAVAAHLGMKC 94 (337)
T ss_pred hHhhHHhcCCCceEEEEccCCcCCcCccchH--HHHHHHHHHHHHHcCCC-EEEECCCCcch--HHHHHHHHHHHcCCcE
Confidence 345555433 25666 8999976 5668 99999999887643 33 44544 4589 9999999999999999
Q ss_pred EEEcCCCCccc--------ccCCCCCCCCCCCcc-cccc-CCCCcc--cccccCccccCcEEecC----hH----HHHHH
Q psy14801 213 VGADPFGSILA--------QPQSLNDVPENQISY-NEVE-GIGYSF--AATTLDRNVIDQWGKCG----DK----DTFLM 272 (404)
Q Consensus 213 i~V~p~~~~~~--------~~~~~~~~~~~~~~~-~~~~-~i~~~~--~~~~~~~~~~~~~~~v~----d~----e~~~~ 272 (404)
++|+|...+.. ....+.......... .... +..... ...........+++... ++ -...+
T Consensus 95 ~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~ 174 (337)
T TIGR01274 95 VLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLGFVGF 174 (337)
T ss_pred EEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccchhHHHHH
Confidence 99988753210 000000011100000 0000 000000 00000000000111111 00 01233
Q ss_pred HHHHHHh--------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc----------------------
Q psy14801 273 ARRLIKS--------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK---------------------- 322 (404)
Q Consensus 273 ~~~l~~~--------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~---------------------- 322 (404)
+.||+++ +.+|+..|||++++|+.+.+++..++.+|+.|++.+...+...
T Consensus 175 ~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (337)
T TIGR01274 175 AFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITED 254 (337)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCcc
Confidence 4444444 3499999999999999999999889999999999775332100
Q ss_pred --ccchhHHhhcCccCcHHHHHHhc--------------cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcc
Q psy14801 323 --FISDEWMIEKGFLDEAEELEEMI--------------HSGTAMHVACQAAKS--LRPDQRCVVILADGVRN 377 (404)
Q Consensus 323 --~~~~~~~~~~~~~~~~~~~~~g~--------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~r 377 (404)
.+... ..+..+.++++++++.+ |||.+++++++++++ ++++++|| +++|+|.+
T Consensus 255 ~~~~~~~-~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv-~~htGG~~ 325 (337)
T TIGR01274 255 DVVLDTR-FAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVL-YAHLGGAP 325 (337)
T ss_pred ceEEecc-ccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEE-EEeCCChh
Confidence 01111 12334556666665532 599999999999876 56778888 88999954
No 159
>KOG1250|consensus
Probab=99.06 E-value=5.4e-10 Score=104.93 Aligned_cols=227 Identities=13% Similarity=0.201 Sum_probs=133.3
Q ss_pred HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+++..+..+|+ .|+.-|.+|.| .|=+..++..+.++ ...-|++++.|| .|.++++.+...++++..|+|...
T Consensus 73 ~~lS~~~g~~vyLK~E~lQpsgSFK--~RGa~~~~~kla~~~~~~gViasSaGN--ha~a~Ayaa~~LgipaTIVmP~~t 148 (457)
T KOG1250|consen 73 VALSKKAGMPVYLKREDLQPSGSFK--IRGAGNALQKLAKQQKKAGVIASSAGN--HAQAAAYAARKLGIPATIVMPVAT 148 (457)
T ss_pred hhhhhhcCCceEEEehhccccccee--hhhHHHHHHHHHHhhhcCceEEecCcc--HHHHHHHHHHhcCCceEEEecCCC
Confidence 3455555556676 78899999999 88888887776543 244578889999 899999999999999999999988
Q ss_pred cccccCCCCCCCCCCCcc-ccccCCCCcccccccCccccCcEE-ecChHHHHH----HHHHHH----Hhc-CcEeccchh
Q psy14801 221 ILAQPQSLNDVPENQISY-NEVEGIGYSFAATTLDRNVIDQWG-KCGDKDTFL----MARRLI----KSE-GLLVGGSSG 289 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~v~d~e~~~----~~~~l~----~~~-gi~~~~~tg 289 (404)
+...-+.....++..... .... .+..+ ...+....--.|+ -.++|.||+ ...||. ... ++++.+|+|
T Consensus 149 p~~kiq~~~nlGA~Vil~G~~~d-eAk~~-a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGG 226 (457)
T KOG1250|consen 149 PLMKIQRCRNLGATVILSGEDWD-EAKAF-AKRLAKENGLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGG 226 (457)
T ss_pred hHHHHHHHhccCCEEEEecccHH-HHHHH-HHHHHHhcCceecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCc
Confidence 654322222222111000 0000 00000 0000000000011 123444431 122333 234 589999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------ccc-----------ccchh-H-----HhhcCccCcHHHH
Q psy14801 290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LTK-----------FISDE-W-----MIEKGFLDEAEEL 341 (404)
Q Consensus 290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~~-----------~~~~~-~-----~~~~~~~~~~~~~ 341 (404)
|-++|+..++|+..|..+|+.|+|.+...+ ++. .++.+ + ..|...+++++++
T Consensus 227 GLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei 306 (457)
T KOG1250|consen 227 GLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEI 306 (457)
T ss_pred hhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHH
Confidence 999999999999999999999999764211 111 01111 1 2334455666555
Q ss_pred HHhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801 342 EEMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGV 375 (404)
Q Consensus 342 ~~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g 375 (404)
...+ +.|+++++.......-.+++++|.+++-++
T Consensus 307 ~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n 353 (457)
T KOG1250|consen 307 AAAILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSGGN 353 (457)
T ss_pred HHHHHHHHHhhhheeccchHHHHHHHHhccccccCCceEEeecccCC
Confidence 4432 667788877777222246788888876443
No 160
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=98.96 E-value=1.7e-09 Score=102.03 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=105.9
Q ss_pred HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhC-C-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801 142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTG-G-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218 (404)
Q Consensus 142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~ 218 (404)
...+++..+..+|+ .|..-|.+|.| -|=|+..+.++. + +...-||++++|| -|-+.|+.++..|++.++|||.
T Consensus 31 s~~Ls~~~g~~v~lK~E~lQ~~gSFK--~RGA~n~i~~Ls~e~~~~~gViaaSaGN--HaQGvA~aa~~lGi~a~IvMP~ 106 (347)
T COG1171 31 SPSLSERLGAEIYLKRENLQPVGSFK--IRGAYNKLSSLSEEEERAAGVIAASAGN--HAQGVAYAAKRLGIKATIVMPE 106 (347)
T ss_pred chhhHHhhCceEEEeeccCcccccch--hhhHHHHHHhcChhhhhcCceEEecCCc--HHHHHHHHHHHhCCCEEEEecC
Confidence 34556655667777 88888999999 777999888875 2 2444589999999 6666777788889999999999
Q ss_pred CCcccccCCCCCCCCCCC--c----------cccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHh-cCcEec
Q psy14801 219 GSILAQPQSLNDVPENQI--S----------YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS-EGLLVG 285 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~--~----------~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~-~gi~~~ 285 (404)
+++...-........... + ....+..+..+++. ++..++-+....-..|+ .+++.+. +.+++.
T Consensus 107 ~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~p-fD~p~viAGQGTi~lEi---leq~~~~~d~v~vp 182 (347)
T COG1171 107 TTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPP-FDDPDVIAGQGTIALEI---LEQLPDLPDAVFVP 182 (347)
T ss_pred CCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCC-CCCcceeecccHHHHHH---HHhccccCCEEEEe
Confidence 986432222221111100 0 00011112222221 11111111111222333 3343333 668999
Q ss_pred cchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801 286 GSSGTAMHVACQAAKSLRPDQRCVVILADGV 316 (404)
Q Consensus 286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~ 316 (404)
.|+||-++|+.-++|.+.|+.+|+.|+|.+.
T Consensus 183 vGGGGLisGia~~~k~~~p~~~vIGVEp~~a 213 (347)
T COG1171 183 VGGGGLISGIATALKALSPEIKVIGVEPEGA 213 (347)
T ss_pred cCccHHHHHHHHHHHHhCCCCeEEEEeeCCC
Confidence 9999999999999999999999999999764
No 161
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=98.78 E-value=3.5e-08 Score=96.89 Aligned_cols=218 Identities=13% Similarity=0.004 Sum_probs=122.1
Q ss_pred cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCC
Q psy14801 156 DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQ 235 (404)
Q Consensus 156 ~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~ 235 (404)
.|+.||++|.| ||.+..++..+.+.-...|+++++|| +|.++|+.++..|+++++++|.+.+..............
T Consensus 91 ~E~~npTGSFK--dRga~~~i~~a~~~g~~~Vv~aSsGN--~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~v 166 (398)
T TIGR03844 91 RGAFMRTCSFK--ELEALPTMQRLKERGGKTLVVASAGN--TGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLL 166 (398)
T ss_pred hhccCCccccH--HHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEE
Confidence 35589999999 99999988877643355789999999 999999999999999999999985321000001100000
Q ss_pred CccccccC-CCCc-ccccccCccccCcEE--ecChHHHH----HHHHHHHHhc-----CcEeccchhhHHHHHHHHHHhc
Q psy14801 236 ISYNEVEG-IGYS-FAATTLDRNVIDQWG--KCGDKDTF----LMARRLIKSE-----GLLVGGSSGTAMHVACQAAKSL 302 (404)
Q Consensus 236 ~~~~~~~~-i~~~-~~~~~~~~~~~~~~~--~v~d~e~~----~~~~~l~~~~-----gi~~~~~tg~tlag~~~~lk~~ 302 (404)
. ...+ .... .....+... .+.+. ...++..+ ..+.|++++. .+++..|+|..+.|+.+.++++
T Consensus 167 v---~v~g~~d~a~~~a~~~a~~-~g~~~~~~~~~p~~ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l 242 (398)
T TIGR03844 167 V---TVDGDYTDAIALADRIATL-PGFVPEGGARNVARRDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRL 242 (398)
T ss_pred E---ECCCCHHHHHHHHHHHHHh-CCccccCCCCCHHHHhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 0 0000 0000 000000000 00000 11133222 2234566554 3777777776777776655542
Q ss_pred C-------CCCeEEEEecCCCCCc---------c-------c-------cccchh--------------H--Hh---hcC
Q psy14801 303 R-------PDQRCVVILADGVRNY---------L-------T-------KFISDE--------------W--MI---EKG 333 (404)
Q Consensus 303 ~-------~~~~vv~v~~~~~~~~---------~-------~-------~~~~~~--------------~--~~---~~~ 333 (404)
. .--++++|.+.+.... . + +.+.+. + +. +..
T Consensus 243 ~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~ 322 (398)
T TIGR03844 243 IEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQM 322 (398)
T ss_pred HHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEE
Confidence 1 1125688887553110 0 0 111110 0 11 123
Q ss_pred ccCcHHHHHHhc-------------cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801 334 FLDEAEELEEMI-------------HSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK 381 (404)
Q Consensus 334 ~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~ 381 (404)
+.++|+++.++. +|++++++..++.++ +.++++||++++=+|.|+|..
T Consensus 323 v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 323 YGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred EEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 456776665532 677778777777665 557899999999999888764
No 162
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=98.70 E-value=1.5e-07 Score=92.47 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHhCC-CcEee-cCCCC-CCChhhHHhhHHHHHHHHh-----C--------------C----CcCEEEEccCCChh
Q psy14801 142 AHRIASQMK-NAVVL-DQFRN-PNNPLSHYETTAEEILRDT-----G--------------G----KVDMIVLGCGTGGT 195 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~n-p~~si~g~~~~a~ei~~q~-----~--------------~----~~~~vvv~~gsG~~ 195 (404)
+..+++..+ ..+|+ +|..+ |.+|.| +|-+...+..+ . . .....||++++||
T Consensus 47 ~~~L~~~~g~~~v~lK~E~~q~~tGSFK--~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN- 123 (396)
T TIGR03528 47 LDNLAKHLGVGSILVKDESYRFGLNAFK--VLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGN- 123 (396)
T ss_pred hHHHHHHhCCCcEEEeeCCCCCCcCChH--HHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccH-
Confidence 445555554 35666 78766 588988 77655444332 0 0 0123789999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801 196 ASGIGRKIKEKCPSCKLVGADPFGSI 221 (404)
Q Consensus 196 ~~Gi~la~~~~~~~~~vi~V~p~~~~ 221 (404)
+|+++|+.++..|+++++|+|.+.+
T Consensus 124 -~g~alA~~aa~~Gi~~~IvvP~~~~ 148 (396)
T TIGR03528 124 -HGRGVAWAANQLGQKSVVYMPKGSA 148 (396)
T ss_pred -HHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 9999999999999999999999875
No 163
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=98.66 E-value=1.4e-07 Score=92.15 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=94.3
Q ss_pred HHHHHHhCC-CcEee-cCCCC-CCChhhHHhhHHHHHHHHhCC--------------------C---cCEEEEccCCChh
Q psy14801 142 AHRIASQMK-NAVVL-DQFRN-PNNPLSHYETTAEEILRDTGG--------------------K---VDMIVLGCGTGGT 195 (404)
Q Consensus 142 a~~l~~~~~-~~~~~-~e~~n-p~~si~g~~~~a~ei~~q~~~--------------------~---~~~vvv~~gsG~~ 195 (404)
...+.+..+ ..+|+ +|+.+ |.||.| +|-+...+.++.. + ....|+++++||
T Consensus 28 ~~~l~~~~g~~~v~~K~E~~~~~tgSFK--~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN- 104 (376)
T TIGR01747 28 LDHLANLLGLKKILVKDESKRFGLNAFK--MLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGN- 104 (376)
T ss_pred hHHHHHHhCCCcEEEeeCCCCCCCCChH--HHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccH-
Confidence 344555544 34665 88876 478888 6655443332200 0 145789999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcc-ccccC---CCCcccccccCccccC-----cEEecCh
Q psy14801 196 ASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY-NEVEG---IGYSFAATTLDRNVID-----QWGKCGD 266 (404)
Q Consensus 196 ~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~-~~~~~---i~~~~~~~~~~~~~~~-----~~~~v~d 266 (404)
+|+++|+.++..|+++++++|+..+......+.......... ..... ..... ....+..+.+ .+.++ +
T Consensus 105 -~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~-~~~~g~~~~~~~~~~~~~~~-~ 181 (376)
T TIGR01747 105 -HGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQM-AQQHGWVVVQDTAWEGYEKI-P 181 (376)
T ss_pred -HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCcEEeccccccccccC-C
Confidence 999999999999999999999987532211111111111000 00000 00000 0000000111 11111 1
Q ss_pred HHH----HHHHHHHHHhcC---------cEeccchhhHHHHHHHHHHhcC-CC-CeEEEEecCCC
Q psy14801 267 KDT----FLMARRLIKSEG---------LLVGGSSGTAMHVACQAAKSLR-PD-QRCVVILADGV 316 (404)
Q Consensus 267 ~e~----~~~~~~l~~~~g---------i~~~~~tg~tlag~~~~lk~~~-~~-~~vv~v~~~~~ 316 (404)
+.+ -..+.||++|.+ +++..|+|+.++|+.+++++.. +. .+|++|+|.+.
T Consensus 182 ~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga 246 (376)
T TIGR01747 182 TWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKA 246 (376)
T ss_pred chHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 222 124566766643 8888999999999999887653 33 48999999764
No 164
>KOG1251|consensus
Probab=98.31 E-value=4.8e-06 Score=73.91 Aligned_cols=213 Identities=14% Similarity=0.128 Sum_probs=121.8
Q ss_pred cEeecCCCCCCChhhHHhhHHHHHHHHhC--CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801 152 AVVLDQFRNPNNPLSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229 (404)
Q Consensus 152 ~~~~~e~~np~~si~g~~~~a~ei~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~ 229 (404)
.||-+|.+.-.|+.| -|-|+.-+.++. +++. =|+.-+||| -|-++++.++..|++..+|+|.+++...-....
T Consensus 42 vfFKcE~fQKtGaFK--fRGAlNav~~l~~ek~~k-gvithSSGN--HaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~ 116 (323)
T KOG1251|consen 42 VFFKCENFQKTGAFK--FRGALNAVSSLKAEKRAK-GVITHSSGN--HAQALALAAKILGIPATIVVPKDAPICKVAATR 116 (323)
T ss_pred eEeehhhhhhcccee--hhhhHHHHHHhhHhhhcC-ceEeecCCc--HHHHHHHHHHhcCCCeEEEecCCChHHHHHHHH
Confidence 355566666667777 777777666654 2333 467788999 666777777888899999999998643211111
Q ss_pred CCCCCC-------Cc-----cccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHH
Q psy14801 230 DVPENQ-------IS-----YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ 297 (404)
Q Consensus 230 ~~~~~~-------~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~ 297 (404)
.+.... .. ....+..+...++ +.+...++.-...-+.+-..++-+.+.+|+..|+||-++|+.-
T Consensus 117 ~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~----Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSgvAl 192 (323)
T KOG1251|consen 117 GYGANIIFCEPTVESRESVAKDLTEETGYYLIH----PYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSGVAL 192 (323)
T ss_pred hcCceEEEecCccchHHHHHHHHHHhcCcEEeC----CCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhHHHH
Confidence 111100 00 0001111111111 1111122222233333333333344679999999999999999
Q ss_pred HHHhcCCCCeEEEEecCCCCC----c---------cccccch----------hH-----HhhcCccCcHHHHHHhc----
Q psy14801 298 AAKSLRPDQRCVVILADGVRN----Y---------LTKFISD----------EW-----MIEKGFLDEAEELEEMI---- 345 (404)
Q Consensus 298 ~lk~~~~~~~vv~v~~~~~~~----~---------~~~~~~~----------~~-----~~~~~~~~~~~~~~~g~---- 345 (404)
..+.+.|+.+|.+++|..+.. + .++.+-| .| ..|+.+.++++++.++.
T Consensus 193 aa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ 272 (323)
T KOG1251|consen 193 AAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIW 272 (323)
T ss_pred HHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHH
Confidence 999999999999999954311 1 1111111 12 23455667888876643
Q ss_pred ---------cchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801 346 ---------HSGTAMHVACQAAKSLRPDQRCVVILADG 374 (404)
Q Consensus 346 ---------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~ 374 (404)
+.+..+++++-...+ ...++|.+|++-+
T Consensus 273 ermK~~vEPTa~lgfAavl~~k~~-~~~K~igIiLsGG 309 (323)
T KOG1251|consen 273 ERMKVVVEPTAALGFAAVLSHKFA-LNIKRIGIILSGG 309 (323)
T ss_pred HHHheeeccchhHHHHHHHhhhHH-hccCceEEEEeCC
Confidence 444555555554333 2478999998843
No 165
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00017 Score=70.64 Aligned_cols=223 Identities=15% Similarity=0.180 Sum_probs=120.5
Q ss_pred cEeecCCCCCCChhhHHhhHHHHHHHHhCCCcC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801 152 AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN 229 (404)
Q Consensus 152 ~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~ 229 (404)
.|+..+|.||+++.| ||...-++..+. ..+ ..|++++||| ||.+++......|++++++-|.+ .+......+.
T Consensus 96 lyvk~~~~nPT~SFK--Drg~~~~~~~~~-~~g~~~I~~ASSGn--TgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~ 170 (411)
T COG0498 96 LYVKELGHNPTGSFK--DRGMTVLVSLAK-ELGAKTILCASSGN--TGASAAAYAARAGLKVFVLYPKGKVSPGKLAQML 170 (411)
T ss_pred eehhhhccCCCcchh--hhhHHHHHHHHH-HhcCCEEEEeCCch--HHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHH
Confidence 344589999999998 887765555544 233 7899999999 88888888889999999999998 3221111111
Q ss_pred CCCCCCCccccccCCCC---cccccccC-ccccCcE--EecChHH-----HHHHHHHHH--HhcCcEeccchhhHHHHHH
Q psy14801 230 DVPENQISYNEVEGIGY---SFAATTLD-RNVIDQW--GKCGDKD-----TFLMARRLI--KSEGLLVGGSSGTAMHVAC 296 (404)
Q Consensus 230 ~~~~~~~~~~~~~~i~~---~~~~~~~~-~~~~~~~--~~v~d~e-----~~~~~~~l~--~~~gi~~~~~tg~tlag~~ 296 (404)
...... ..+.|--. ..+....+ ..+.... +|..--| .++...++. ..+.+++-.|.++.+.|+.
T Consensus 171 ~~ga~~---i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~ 247 (411)
T COG0498 171 TLGAHV---IAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIY 247 (411)
T ss_pred hcCCEE---EEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHH
Confidence 100000 00011000 00000000 0000000 0000000 022222222 2234778889999999999
Q ss_pred HHHHhcCCCCe------EEEEecCCCC------C---ccccccch--------hH------Hhhc---CccCcHHHHHHh
Q psy14801 297 QAAKSLRPDQR------CVVILADGVR------N---YLTKFISD--------EW------MIEK---GFLDEAEELEEM 344 (404)
Q Consensus 297 ~~lk~~~~~~~------vv~v~~~~~~------~---~~~~~~~~--------~~------~~~~---~~~~~~~~~~~g 344 (404)
+..++..+-.+ ...+.+.+.. + .....+.+ .| +... ...++|++....
T Consensus 248 ~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a 327 (411)
T COG0498 248 KGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEA 327 (411)
T ss_pred HHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHH
Confidence 88887544322 2222222210 0 01111111 11 1111 234677766553
Q ss_pred c-------------cchhHHHHHHHHHHh-cCCCCeEEEEEcCCCcchhhcc
Q psy14801 345 I-------------HSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTKF 382 (404)
Q Consensus 345 ~-------------SsGa~~~~a~~~~~~-~~~~~~iv~i~~D~g~rYl~~~ 382 (404)
. +|++++++..++.++ +.++.++|+++.=+|.|+.+++
T Consensus 328 ~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~v 379 (411)
T COG0498 328 IKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDTV 379 (411)
T ss_pred HHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhHH
Confidence 2 778888888887764 4567899999999999999874
No 166
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00025 Score=65.60 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEc
Q psy14801 138 MIAGAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216 (404)
Q Consensus 138 ~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~ 216 (404)
.+-.|+++.+..+..+|+ .|-.|-+++-|-.-.++.-++.+-.+ ..-+|.|.|.|- -|++.|..++..+.++++.|
T Consensus 58 pLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMG-K~riIAETGAGQ--HGVAtAta~A~fgl~C~iYM 134 (396)
T COG0133 58 PLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMG-KTRIIAETGAGQ--HGVATATAAALFGLECVIYM 134 (396)
T ss_pred hhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhC-CceEEeecCCCc--ccHHHHHHHHHhCCceEEEe
Confidence 345688888877767777 77788877767566777666655332 356999999999 99999999999999998887
Q ss_pred CCCCcccc-cC--CCCCCCCCC----Cc-cccccCCCC--cccccccCc---------------cccCcEEecChHHHHH
Q psy14801 217 PFGSILAQ-PQ--SLNDVPENQ----IS-YNEVEGIGY--SFAATTLDR---------------NVIDQWGKCGDKDTFL 271 (404)
Q Consensus 217 p~~~~~~~-~~--~~~~~~~~~----~~-~~~~~~i~~--~~~~~~~~~---------------~~~~~~~~v~d~e~~~ 271 (404)
-.....-. .. .+....+.. .+ .+..+.+.. ..|..+++. ..+..+-.|-..|+..
T Consensus 135 Ga~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~ 214 (396)
T COG0133 135 GAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKA 214 (396)
T ss_pred cchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHH
Confidence 65432100 00 000000000 00 000000000 001111110 1111222333444444
Q ss_pred HHHHHHHhcC-----cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC----------------------CCccc---
Q psy14801 272 MARRLIKSEG-----LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV----------------------RNYLT--- 321 (404)
Q Consensus 272 ~~~~l~~~~g-----i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~----------------------~~~~~--- 321 (404)
++. +.+| +++++++|.+-.|+..-+-. .++.+.+.|++++- ..|+.
T Consensus 215 Qil---e~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~ 290 (396)
T COG0133 215 QIL---EKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDE 290 (396)
T ss_pred HHH---HHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcC
Confidence 443 4445 89999999998887543322 36789999998651 01110
Q ss_pred ----------------cccc--hhHHhhcC----ccCcHHHHHHhc-------------cchhHHHHHHHHHHhcCCCCe
Q psy14801 322 ----------------KFIS--DEWMIEKG----FLDEAEELEEMI-------------HSGTAMHVACQAAKSLRPDQR 366 (404)
Q Consensus 322 ----------------~~~~--~~~~~~~~----~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~~~~~ 366 (404)
++++ ..|+.+.. ..++|+++.+++ -|.-+++.+.+++++++++..
T Consensus 291 ~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ 370 (396)
T COG0133 291 DGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEI 370 (396)
T ss_pred CCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcE
Confidence 1111 23444432 236777766532 567788899999999888888
Q ss_pred EEEEEcCCCcchhhccC
Q psy14801 367 CVVILADGVRNYLTKFI 383 (404)
Q Consensus 367 iv~i~~D~g~rYl~~~~ 383 (404)
||+=+.-+|+|=+.++.
T Consensus 371 ivvnlSGRGDKDv~tv~ 387 (396)
T COG0133 371 IVVNLSGRGDKDVFTVA 387 (396)
T ss_pred EEEEccCCCcccHHHHH
Confidence 88888889998887754
No 167
>KOG1395|consensus
Probab=97.35 E-value=0.0021 Score=60.32 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=56.0
Q ss_pred HHHHHHHHHhC--CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEE
Q psy14801 139 IAGAHRIASQM--KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215 (404)
Q Consensus 139 ~~~a~~l~~~~--~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V 215 (404)
+.+|+||.+.. +..+|+ .|-.|++||-|-.-.++..++..-. ....+|.|.|.|- -|+++|+.++..|.+++..
T Consensus 125 L~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~Qallakrl-GkknviaETGAGQ--hGvatA~a~a~FGl~C~v~ 201 (477)
T KOG1395|consen 125 LIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRL-GKKNVIAETGAGQ--HGVATATACAKFGLDCTVY 201 (477)
T ss_pred hHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHh-cccceeeccCCCc--cchHHHHHHHHhCCceEEE
Confidence 34466665533 345666 8889999987755555555554322 2356899999999 9999999999988888887
Q ss_pred cCCCC
Q psy14801 216 DPFGS 220 (404)
Q Consensus 216 ~p~~~ 220 (404)
|-.++
T Consensus 202 mgAed 206 (477)
T KOG1395|consen 202 MGAED 206 (477)
T ss_pred echhH
Confidence 76554
No 168
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=91.44 E-value=2.1 Score=40.43 Aligned_cols=65 Identities=11% Similarity=-0.065 Sum_probs=45.4
Q ss_pred EeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 153 VVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 153 ~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
||-.|...|.||-|-...+|..-....+ ....++-+.|.|- -|.++++.++..+.++...|...+
T Consensus 98 YyK~Eg~tptGSHKiNTAlAqaYyak~e-g~~rl~TETGAGQ--WGsAlslA~alf~lk~~V~Mvr~S 162 (432)
T COG1350 98 YYKYEGVTPTGSHKINTALAQAYYAKKE-GAKRLTTETGAGQ--WGSALSLAAALFGLKATVFMVRVS 162 (432)
T ss_pred EEEecccCCCCCCCcchHHHHHHHHHhc-CceeeecccCCch--HHHHHHHHHHHhCceeEEEEEehh
Confidence 4447888898887733333333333333 3556788888888 999999999988888887776544
No 169
>KOG2616|consensus
Probab=91.32 E-value=0.43 Score=42.20 Aligned_cols=57 Identities=7% Similarity=0.218 Sum_probs=50.9
Q ss_pred ecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc
Q psy14801 263 KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319 (404)
Q Consensus 263 ~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~ 319 (404)
.|+|.|..+++..+|+..+++.+|+|+.+.-...+.+.+..|+..+++..|.++.+|
T Consensus 150 ~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ps~~~i~lstAh~aKF 206 (266)
T KOG2616|consen 150 RVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQPSIPYICLSTAHPAKF 206 (266)
T ss_pred hcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccCCCCceEEecccChhhh
Confidence 589999999999999999999999999999988888877778888999999887665
No 170
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=91.02 E-value=1.5 Score=41.09 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801 266 DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318 (404)
Q Consensus 266 d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~ 318 (404)
-.|+.++.+++.+-+-+|+.++||+|.||++-.+....++.+|+.+.+.....
T Consensus 168 a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 168 ALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 34555555544444568999999999999998888788899999999866543
No 171
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=90.46 E-value=0.66 Score=46.72 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=46.4
Q ss_pred CcEeecCCCCCCChhhHHhhHHHH---HHHHhCC--CcCEEEEccCCChhHHHHH-HHHHHhCCCcEEEEEcCCC
Q psy14801 151 NAVVLDQFRNPNNPLSHYETTAEE---ILRDTGG--KVDMIVLGCGTGGTASGIG-RKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 151 ~~~~~~e~~np~~si~g~~~~a~e---i~~q~~~--~~~~vvv~~gsG~~~~Gi~-la~~~~~~~~~vi~V~p~~ 219 (404)
+.+++..|.||+++.| |+...- ++..+.. .-...|+.++||+ ||.+ ++.-+..+++++++..|.+
T Consensus 96 ~~~~lELfhGPT~sFK--D~a~~~l~~l~~~~~~~~~~~~~Il~ATSGd--TG~Aa~aaf~~~~gi~v~Vl~P~g 166 (460)
T cd01560 96 NLYVLELFHGPTLAFK--DMALQFLGRLLEYFLKRRNERITILVATSGD--TGSAAIEGFRGKPNVDVVVLYPKG 166 (460)
T ss_pred CcEEeeeeeCCCcchH--HhHHHHHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHhCcCCCEEEEEEcCC
Confidence 4455678899999988 776543 3443321 2356788999999 7777 3555567899999999987
No 172
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.45 E-value=5.5 Score=40.66 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
..|+.+|+.-+.|..|.+.+..|+.+|-+++++ +..+.++++.+.+|++.+.++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 346789999999999999999999999864443 456788999999999966554
No 173
>PRK09225 threonine synthase; Validated
Probab=89.13 E-value=0.93 Score=45.67 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=45.3
Q ss_pred cEeecCCCCCCChhhHHhhHHHH---HHHHhCCCcCEEEEccCCChhHHHHHH-HHHHhCCCcEEEEEcCCC
Q psy14801 152 AVVLDQFRNPNNPLSHYETTAEE---ILRDTGGKVDMIVLGCGTGGTASGIGR-KIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 152 ~~~~~e~~np~~si~g~~~~a~e---i~~q~~~~~~~vvv~~gsG~~~~Gi~l-a~~~~~~~~~vi~V~p~~ 219 (404)
.+++.-|.||+++.| |+...- ++..+.+.-...|+.++||+ ||-+. +--+..+++++++..|.+
T Consensus 98 ~~~lELfhGPT~sFK--D~a~~~l~~~l~~a~~~~~~~Il~ATSGd--tG~Aa~aaf~~~~gi~~~V~~P~g 165 (462)
T PRK09225 98 LYVLELFHGPTLAFK--DFALQFLAQLLEYVLKGEKITILGATSGD--TGSAAAEAFRGKPNVRVVILYPKG 165 (462)
T ss_pred ceeHhhccCCccchh--hhHHHHHHHHHHHHHhCCCcEEEEcCCCc--HHHHHHHHHhCcCCCEEEEEEcCC
Confidence 344467889999988 776543 45444322245788899999 77665 344557899999999987
No 174
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.58 E-value=3.8 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+++++|+..++|..|...+..++.+|.+++++.....++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 346677777778999999999999999986666554456788999999999864
No 175
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.14 E-value=5.2 Score=37.27 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.++....++++|+..+.|..|..++..|+.+|.+.++++ ..++.|++.++.+|++.+.
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 334334577888777889999999999999999855554 4467888899999996543
No 176
>KOG2862|consensus
Probab=84.58 E-value=18 Score=34.30 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc
Q psy14801 74 GYTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA 152 (404)
Q Consensus 74 ~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~ 152 (404)
+.+++.++||..|.-.|+.--. .|=++.++.-..-+..-.+..+.+|++|..++.+ ....-......+.+++..+..
T Consensus 68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~ 145 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKA 145 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCce
Confidence 4789999999888665543322 2556666655455566678889999999999763 333333445567788877778
Q ss_pred EeecCCCCCCChhh
Q psy14801 153 VVLDQFRNPNNPLS 166 (404)
Q Consensus 153 ~~~~e~~np~~si~ 166 (404)
+++.+.+..++...
T Consensus 146 vfv~hgdsSTgV~q 159 (385)
T KOG2862|consen 146 VFVTHGDSSTGVLQ 159 (385)
T ss_pred EEEEecCccccccc
Confidence 88877666665544
No 177
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.09 E-value=5.5 Score=38.33 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
+++++...+||+.|...+-|-.|.....+|+.+|.+++.+ +.++.|++..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence 3455567789999999999977777778999999888887 467899999999999988764
No 178
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=82.05 E-value=27 Score=34.37 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=73.4
Q ss_pred EEecCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCCCCChhhHH-HHHHHHHHh
Q psy14801 77 IVEPSSG-NTGIGLAMVAAIKGYKMVVVMPM-KMS----KEKVYTMKALGA-KIIRTQNDKSYDHPEGMI-AGAHRIASQ 148 (404)
Q Consensus 77 vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~-~~~----~~k~~~l~~~Ga-~v~~v~~~~~~~~~~~~~-~~a~~l~~~ 148 (404)
|+..|+| ++...+.+...+.+++++.|.-+ +.+ ..-.+....+|| +++.++.. ++.. +.+...-+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r------~ef~~~~i~~aI~a 74 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR------DEFAEDYIFPAIKA 74 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H------HHHHHHTHHHHHHT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH------HHHHHHHHHHHHHH
Confidence 5667888 99999999999999999998854 323 233456688899 99988752 2221 112222222
Q ss_pred CCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEE-ccCCChhHHHHHHHHHHhCCCcEEEE
Q psy14801 149 MKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVL-GCGTGGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 149 ~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv-~~gsG~~~~Gi~la~~~~~~~~~vi~ 214 (404)
+..|-..|-... + -...-+|..+++-+.+ .-+.+.- +.|.||-..=+-++++...|..++++
T Consensus 75 --nA~Yeg~YpL~t-s-l~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 75 --NALYEGRYPLST-S-LARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp --T--BTTTB--CC-C-CHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred --HHHhCCCccccc-c-chHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 234433333322 1 2224556666655542 2455555 35679988888889999999888876
No 179
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.50 E-value=19 Score=31.88 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHh---CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEE
Q psy14801 55 DRAAWRMIEDAETA---GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTM-KALGAKII 124 (404)
Q Consensus 55 ~R~a~~~l~~a~~~---g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l-~~~Ga~v~ 124 (404)
-+|..+.+..+.+. +..-.|++++.-+.||.|..+|......|.+++++ . ....+.+.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 36777777777655 44445678999999999999999999999988754 2 234444444 33466543
No 180
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.63 E-value=8.4 Score=36.88 Aligned_cols=57 Identities=23% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
..+..+++|++|+....|..|.+++..|+.+|.+++++. .++.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCceec
Confidence 344667788888777778889888899999999754442 346688899999997553
No 181
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.55 E-value=55 Score=31.41 Aligned_cols=56 Identities=34% Similarity=0.442 Sum_probs=41.7
Q ss_pred hCCCCCCCEE-EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 68 AGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 68 ~g~~~~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
...+++|++| |.+.+|.-|..+.-.|+.+|...++.. .+..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~---~s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV---SSSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe---cCHHHHHHHHhcCCCEEEc
Confidence 4666777775 666699999999999999998444443 3456677999999976654
No 182
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.53 E-value=12 Score=35.95 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=44.1
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
..+..++++++|+..+.|..|.+++.+|+.+|.+++++ ..++.|++.++.+|++.++.
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 34455677888887777999999999999999974443 33567888889999975543
No 183
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=79.29 E-value=9.4 Score=36.24 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=44.1
Q ss_pred hCCCCCCCEEEecCCC---hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q psy14801 68 AGVLKPGYTIVEPSSG---NTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssG---N~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~l~~~Ga~v~~v~ 127 (404)
.|.+ .|.+|+..+.+ |.+.|+..+++++|++++++.|++. ++.-++.++..|+++..+.
T Consensus 145 ~g~l-~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRL-DGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCC-CCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 4543 45677777764 8899999999999999999999863 5555566777888887654
No 184
>KOG0024|consensus
Probab=79.07 E-value=9.3 Score=36.32 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=52.9
Q ss_pred HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
+|-+++..++|.+++..+.|--|+..-..|+.+|-+=++++ ...+.|++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeec
Confidence 56677888999999999999999999999999998777765 356788999999999987543
No 185
>PRK07109 short chain dehydrogenase; Provisional
Probab=78.63 E-value=64 Score=30.93 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=47.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|--|.++|......|.+++++...... ....+.++..|++++.+.. +..+.+...+.+++..++
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~--Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA--DVADAEAVQAAADRAEEE 82 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe--cCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999988776543211 1223455677888877765 344554444444544444
No 186
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=77.94 E-value=17 Score=35.85 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=44.9
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
..+..++++++|+...+|..|..++..|+.+|.+.+++. +....|++..+.+|++.+
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETV 234 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEE
Confidence 344566788888778889999999999999999876643 234678999999999843
No 187
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=76.92 E-value=36 Score=29.79 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=66.9
Q ss_pred hhHHHHHHHHhCCC------cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccccc
Q psy14801 169 ETTAEEILRDTGGK------VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVE 242 (404)
Q Consensus 169 ~~~a~ei~~q~~~~------~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
...+.|+++++.++ ....++|+.=+-...-+-..+....|.+-+-.=+..+-.......+. -
T Consensus 16 ~NPs~e~vk~L~~~~i~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERVA------------I 83 (207)
T COG2039 16 INPSWEAVKELNGRIIGGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPERVA------------I 83 (207)
T ss_pred CChHHHHHHhcCcccccCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChhhee------------e
Confidence 34455677766542 44566777666655555556666666443222222222111111100 0
Q ss_pred CCCCcccccccCccccCcEEecChHHHH------HHHHHHHHhcCcEeccc-hhhHH------HHHHHHHHhcCCCCeEE
Q psy14801 243 GIGYSFAATTLDRNVIDQWGKCGDKDTF------LMARRLIKSEGLLVGGS-SGTAM------HVACQAAKSLRPDQRCV 309 (404)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~v~d~e~~------~~~~~l~~~~gi~~~~~-tg~tl------ag~~~~lk~~~~~~~vv 309 (404)
.+....++++-.+...|+-+..+.+.++ .++.+.+++.|+-+..| |+||+ .+++.++.++++..+--
T Consensus 84 Nv~DarIpDN~G~qpiDepI~~dGpaAYfstlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l~~~~~~~~~~~~G 163 (207)
T COG2039 84 NVDDARIPDNAGNQPIDEPIDPDGPAAYFSTLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKKGPPVRAG 163 (207)
T ss_pred ccccccCCCCCCCCcCCCccCCCCchhhhhcCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHHHHHHHhCCCCcce
Confidence 0111123333333334444444455442 44445556789998887 88875 46777777777766544
Q ss_pred EEe
Q psy14801 310 VIL 312 (404)
Q Consensus 310 ~v~ 312 (404)
+++
T Consensus 164 FiH 166 (207)
T COG2039 164 FIH 166 (207)
T ss_pred eEe
Confidence 443
No 188
>KOG0025|consensus
Probab=76.46 E-value=14 Score=34.60 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=58.0
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCCC-HH
Q psy14801 39 TTDAKCEFMNP-----TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKMS-KE 111 (404)
Q Consensus 39 ~l~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~~-~~ 111 (404)
+-++|.+..-| |-+.-=-.|+.||.+.... .+|+.||--++- --|.++--.|+.+|++.+=++.+... .+
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L---~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL---NKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhc---CCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 34666666433 2233333567788777653 346766654322 44577778999999999999987544 34
Q ss_pred HHHHHHHcCCEEEEeCC
Q psy14801 112 KVYTMKALGAKIIRTQN 128 (404)
Q Consensus 112 k~~~l~~~Ga~v~~v~~ 128 (404)
-.++|+.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 46688999999988764
No 189
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=75.72 E-value=40 Score=34.10 Aligned_cols=115 Identities=20% Similarity=0.221 Sum_probs=58.8
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK-MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
.+|.......|+..++...+..+. ++.+=-+ -+|++..=+=..-+..++.+|++++.++.+.+--+.+ ..++.
T Consensus 148 ~~g~~~~~~~IiiT~G~q~al~l~--~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e----~le~~ 221 (459)
T COG1167 148 RRGISCEPEQIVITSGAQQALDLL--LRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPE----ALEEA 221 (459)
T ss_pred hcCCccCcCeEEEeCCHHHHHHHH--HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHH----HHHHH
Confidence 345433223566655556665533 3333222 3444443334566788999999999998753222322 23333
Q ss_pred HHh-CCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEc
Q psy14801 146 ASQ-MKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLG 189 (404)
Q Consensus 146 ~~~-~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~ 189 (404)
.++ .+..+|+ .-|.||.|..-- ..--.+|++-++ +.|.+|||
T Consensus 222 ~~~~~~k~~y~~P~~qNPtG~tms-~~rR~~Ll~lA~-~~~~~IIE 265 (459)
T COG1167 222 LAQWKPKAVYVTPTFQNPTGVTMS-LERRKALLALAE-KYDVLIIE 265 (459)
T ss_pred HhhcCCcEEEECCCCCCCCCCccC-HHHHHHHHHHHH-HcCCeEEe
Confidence 332 2344555 788999885321 111223444442 44555555
No 190
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=75.49 E-value=13 Score=33.41 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=41.2
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
+|...+|+.|..++.+....+.++.+++... +....+.++..|++++..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~ 50 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEA 50 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeec
Confidence 5788899999999999999999999998765 455677788899998854
No 191
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=75.20 E-value=17 Score=31.48 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=47.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-----MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-----~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+.+.|..|..+|..-...|-+-+|++... .....++.++..|++|..... +..+.++..+...++.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~--Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQC--DVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE----TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeecc--CccCHHHHHHHHHHHHhc
Confidence 568888999999999998888877666666554 223567888999999998876 344555544444444443
No 192
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.13 E-value=64 Score=29.14 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHhCCCcCE-EEEccCCChhHHHHHHHHHHhCCCcEEEE
Q psy14801 174 EILRDTGGKVDM-IVLGCGTGGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 174 ei~~q~~~~~~~-vvv~~gsG~~~~Gi~la~~~~~~~~~vi~ 214 (404)
||.+..+...+. -+.|++.+| .....+++.-.|+.+++.
T Consensus 124 Ei~~A~~~Ga~~vKlFPA~~~G--~~~ikal~~p~p~i~~~p 163 (222)
T PRK07114 124 EIGYAEELGCEIVKLFPGSVYG--PGFVKAIKGPMPWTKIMP 163 (222)
T ss_pred HHHHHHHCCCCEEEECcccccC--HHHHHHHhccCCCCeEEe
Confidence 666555433343 477888888 777788888888888875
No 193
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=74.30 E-value=39 Score=33.19 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=54.1
Q ss_pred CCCChhhHHHHHHHHHHHHhCC--CCCCCEEEecCCChHHHHHHHHHH-Hc-CCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 49 PTGSLKDRAAWRMIEDAETAGV--LKPGYTIVEPSSGNTGIGLAMVAA-IK-GYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 49 ptGS~K~R~a~~~l~~a~~~g~--~~~~~~vv~~ssGN~g~a~A~~a~-~~-G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+.|.-+.|-+..-... ...|. +.+...|+...++..+..++..+- .. |-.-.|++|.-.-..-...++.+|++++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~ 142 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPY 142 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEE
Confidence 3566666644322111 11242 333335666666677766555432 22 1122344443222333445778999999
Q ss_pred EeCCCCC--CC-ChhhHHHHHHHHHHhCCCcEeecCCCCCCChh
Q psy14801 125 RTQNDKS--YD-HPEGMIAGAHRIASQMKNAVVLDQFRNPNNPL 165 (404)
Q Consensus 125 ~v~~~~~--~~-~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si 165 (404)
.++-+.+ |. +.+. .++...+....+|++...||.|.+
T Consensus 143 ~vp~~~~~~~~~d~~~----l~~~~~~~~k~i~l~nP~NPTG~~ 182 (396)
T PRK09147 143 FLNCDPANNFAPDFDA----VPAEVWARTQLLFVCSPGNPTGAV 182 (396)
T ss_pred EeccCccccCccCHHH----HHHHHhhccEEEEEcCCCCCcCcc
Confidence 9986321 21 1111 222222222456666668898753
No 194
>KOG0023|consensus
Probab=74.09 E-value=13 Score=35.44 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=46.5
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
++.|. .||+.+...+.|-.|.-.-.+|+.+|++++++- ..+..|.+.++.+||+..+...
T Consensus 175 k~~g~-~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis--~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSGL-GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVIS--TSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcCC-CCCcEEEEecCcccchHHHHHHHHhCcEEEEEe--CCchhHHHHHHhcCcceeEEec
Confidence 44454 599998777766688777789999999999983 3345778899999999988753
No 195
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.99 E-value=17 Score=34.94 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
..+....++++|+..++|..|.+....++.+|.+-++++. .++.|++.++.+|++.++
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3333344677877777899999999999999996444443 346788899999997654
No 196
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.82 E-value=13 Score=36.93 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+...+|++|+..+.|.-|+.+|..++.+|.+++++ ..++.|....+.+|++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 55567899999999999999999999999986554 334667777888898654
No 197
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=73.77 E-value=18 Score=34.65 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
......+++++|+..++|..|.+++..|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 3445566778877777899999999999999998655543 35677778888998644
No 198
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=73.56 E-value=22 Score=34.57 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=42.9
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...++++++|+...+|..|..++..|+.+|.+-++++ ..++.|++.++.+|++.++
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEe
Confidence 44566788887777789999999999999999544443 3456788888999996543
No 199
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.17 E-value=7.3 Score=40.50 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecC------------------CCCHHHHHHHHHcCCEEEEe
Q psy14801 71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM------------------KMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~------------------~~~~~k~~~l~~~Ga~v~~v 126 (404)
..+|++|+.-++|-.|++.|.+++++|.+++++=.. .....+++.++.+|++++.-
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 356789999999999999999999999998877321 12245677888899987653
No 200
>PLN02740 Alcohol dehydrogenase-like
Probab=73.12 E-value=19 Score=35.29 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=43.3
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...+++|++|+..+.|.-|.+++..|+.+|.+-++.+ ..++.|++.++.+|++.++
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 44567788888877889999999999999998534433 2356788888999996543
No 201
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.05 E-value=20 Score=34.68 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.+.+.++++++|+..++|-.|.+++..|+.+|.+.++++ ..++.|++.++.+|++-++
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEE
Confidence 345566788888777789999999999999999744444 2356788888999986443
No 202
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.03 E-value=24 Score=34.29 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.+..+++|++|+...+|.-|.+++..|+.+|.+-++.+ ..++.|++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44567788888777789999999999999999433433 3356788888999996543
No 203
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.98 E-value=7.7 Score=32.81 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=34.0
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGA 121 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga 121 (404)
+|...++||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 37788999999999999999999999997643 55555555443
No 204
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=72.85 E-value=48 Score=32.44 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=47.3
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--CCC-ChhhHHHHHHHHHHhCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK--SYD-HPEGMIAGAHRIASQMK 150 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~--~~~-~~~~~~~~a~~l~~~~~ 150 (404)
..|+..+++..+..++..+- ..|=...|++|.-.-..-....+..|++++.++-+. ++. +.++. .+.+.+ ..
T Consensus 91 ~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l---~~~~~~-~~ 166 (393)
T TIGR03538 91 RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV---PESVWR-RC 166 (393)
T ss_pred ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHH---HHHHhh-cc
Confidence 35666666677776655432 345444567775222222345778999999987531 232 22222 112222 22
Q ss_pred CcEeecCCCCCCChh
Q psy14801 151 NAVVLDQFRNPNNPL 165 (404)
Q Consensus 151 ~~~~~~e~~np~~si 165 (404)
..+|++...||.|.+
T Consensus 167 k~i~l~~p~NPtG~~ 181 (393)
T TIGR03538 167 QLLFVCSPGNPTGAV 181 (393)
T ss_pred eEEEEeCCCCCcCcc
Confidence 456666668998754
No 205
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.83 E-value=23 Score=33.72 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.++..+++|++|+...+|--|.+++.+|+.+|.+-++++ ..++.|++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 344456677887777789999999999999999833333 2356778888889986543
No 206
>PRK12743 oxidoreductase; Provisional
Probab=72.57 E-value=32 Score=31.24 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=47.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+.++|.-|.++|......|.+++++.....+. ...+.++.+|.++..+.. +..+.+...+.++++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQL--DLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEc--cCCCHHHHHHHHHHHHHH
Confidence 567888899999999999999999987775433222 223456677888777665 344444444444554443
No 207
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=72.55 E-value=24 Score=34.17 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=42.2
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...+++|++|+..++|..|.+++..|+.+|.+-++++. .+..|++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~--~~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD--LNPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345567888887777899999999999999984334432 345788888999986444
No 208
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=71.21 E-value=25 Score=34.12 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=42.2
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+.+.+++|++|+..++|..|.+++..++.+|.+-++++. ....|++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVD--INEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCcE
Confidence 456677888887778899999999999999995333332 25678888888998544
No 209
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=71.07 E-value=33 Score=31.18 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=45.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+.. +..+.+...+..+++.++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTA--DLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEE--eCCCHHHHHHHHHHHHHH
Confidence 568888899999999999999999887764332112233445566777766554 333444444444444443
No 210
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.76 E-value=24 Score=34.26 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=42.3
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...++++++|+..++|..|.+++..|+.+|.+-++++ ..++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~--~~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGI--DINPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCCEEE
Confidence 44566778887776789999999999999999534443 2345678888899986543
No 211
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.62 E-value=37 Score=29.20 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee---cCCCC
Q psy14801 85 TGIGLAMVAAIKGYKM-VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL---DQFRN 160 (404)
Q Consensus 85 ~g~a~A~~a~~~G~~~-~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~---~e~~n 160 (404)
-|..+..+++.+|.++ .-+-+.+.-..-.+.+...|-.|.+++++. +...+.++.+.+..++.-.+ +.|++
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~-----~~~~~~~~~l~~~yP~l~ivg~~~g~f~ 86 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE-----EVLEKAAANLRRRYPGLRIVGYHHGYFD 86 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3578889999999887 333222333445666777889999998732 12233456666666654332 33333
Q ss_pred CCChhhHHhhHHHHHHHHhC-CCcCEEEEccCCChhHHHHHHHH
Q psy14801 161 PNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRKI 203 (404)
Q Consensus 161 p~~si~g~~~~a~ei~~q~~-~~~~~vvv~~gsG~~~~Gi~la~ 203 (404)
+. . . .+|++++. .+||.++|..|+-- -=....-
T Consensus 87 ~~---~--~---~~i~~~I~~~~pdiv~vglG~Pk--QE~~~~~ 120 (172)
T PF03808_consen 87 EE---E--E---EAIINRINASGPDIVFVGLGAPK--QERWIAR 120 (172)
T ss_pred hh---h--H---HHHHHHHHHcCCCEEEEECCCCH--HHHHHHH
Confidence 21 1 2 23444443 25899999999876 4444433
No 212
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=69.65 E-value=34 Score=32.38 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=42.6
Q ss_pred HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+.+.+++|++|+..+ +|--|.+++..|+.+|.++++.. .+..|.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~---~s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAA---GSDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 456677888875554 78999999999999999866553 346788888999996544
No 213
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=69.54 E-value=32 Score=33.30 Aligned_cols=77 Identities=29% Similarity=0.389 Sum_probs=54.3
Q ss_pred CCC-ChhhHHHHHHHHH-----HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC
Q psy14801 49 PTG-SLKDRAAWRMIED-----AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKA-LGA 121 (404)
Q Consensus 49 ptG-S~K~R~a~~~l~~-----a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~-~Ga 121 (404)
|.+ +.+.-.+.-.+.- +..++. +++.+|+..+.|.-|+..+..++.+|...+|++ ..++.|+++.+. .|+
T Consensus 139 pd~~~~~~aal~epla~~~~~~a~~~~~-~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~ 215 (350)
T COG1063 139 PDGIDEEAAALTEPLATAYHGHAERAAV-RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGA 215 (350)
T ss_pred CCCCChhhhhhcChhhhhhhhhhhccCC-CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCC
Confidence 345 5665544433322 333333 344589999999999999999999999999988 456788888877 777
Q ss_pred EEEEeCC
Q psy14801 122 KIIRTQN 128 (404)
Q Consensus 122 ~v~~v~~ 128 (404)
+++.-+.
T Consensus 216 ~~~~~~~ 222 (350)
T COG1063 216 DVVVNPS 222 (350)
T ss_pred eEeecCc
Confidence 7776553
No 214
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.44 E-value=35 Score=29.86 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=39.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM 149 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~ 149 (404)
+.|--.|||-+|.++|..+...|..++++.....-+. -.+.+++.+.. .+++.+.+.+..++.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s------a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES------AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS------HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc------hhhhhhhhccccCcc
Confidence 4566789999999999999999999999987642111 24667777653 456666666555443
No 215
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=69.42 E-value=39 Score=31.92 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=41.1
Q ss_pred CCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCCCH--HHHH----HHHHcCCEEEEeC
Q psy14801 73 PGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVY----TMKALGAKIIRTQ 127 (404)
Q Consensus 73 ~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~----~l~~~Ga~v~~v~ 127 (404)
.|.+++-.+.| |-+.|+-.+|+++|+++.+..|++..+ .-.+ ..+..|+.+.++.
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 45677777766 889999999999999999999996433 2222 2344588998875
No 216
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=69.00 E-value=85 Score=27.95 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=68.9
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC
Q psy14801 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157 (404)
Q Consensus 78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e 157 (404)
|+.++-+.-.++....+.+. ++.|=...-.+.+..+.....||+.+..|+ ++ .+..+. +++. +..++..
T Consensus 39 it~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~---~~--~~v~~~----~~~~-~i~~iPG 107 (204)
T TIGR01182 39 VTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPG---LT--PELAKH----AQDH-GIPIIPG 107 (204)
T ss_pred EeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCC---CC--HHHHHH----HHHc-CCcEECC
Confidence 55566677777777877776 555554555677888888889999998886 32 122222 3333 3344433
Q ss_pred CCCCCChhhHHhhHHHHHHHHhCCCcCE-EEEccC-CChhHHHHHHHHHHhCCCcEEEE
Q psy14801 158 FRNPNNPLSHYETTAEEILRDTGGKVDM-IVLGCG-TGGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 158 ~~np~~si~g~~~~a~ei~~q~~~~~~~-vvv~~g-sG~~~~Gi~la~~~~~~~~~vi~ 214 (404)
...| -||....+...+. -+.|++ .|| .....+++.-.|+++++.
T Consensus 108 ~~Tp-----------tEi~~A~~~Ga~~vKlFPA~~~GG--~~yikal~~plp~i~~~p 153 (204)
T TIGR01182 108 VATP-----------SEIMLALELGITALKLFPAEVSGG--VKMLKALAGPFPQVRFCP 153 (204)
T ss_pred CCCH-----------HHHHHHHHCCCCEEEECCchhcCC--HHHHHHHhccCCCCcEEe
Confidence 3333 3565555433343 367766 455 556678888888888763
No 217
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.00 E-value=37 Score=31.90 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=42.1
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+.+.++++.+|+..++|-.|.+++..|+.+|.+.+++ ..++.+.+.++.+|+...
T Consensus 148 ~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEE
Confidence 34566777788766678999999999999999995444 234677888888888654
No 218
>KOG1014|consensus
Probab=68.86 E-value=47 Score=31.49 Aligned_cols=78 Identities=8% Similarity=0.142 Sum_probs=47.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN 151 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~ 151 (404)
=.||+..|.-=|.+.|.--++.|++++++ .++. ...+.+..+.++++|...-. ||...++.++..++...+.+-
T Consensus 51 WAVVTGaTDGIGKayA~eLAkrG~nvvLI-sRt~~KL~~v~kEI~~~~~vev~~i~~--Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 51 WAVVTGATDGIGKAYARELAKRGFNVVLI-SRTQEKLEAVAKEIEEKYKVEVRIIAI--DFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred EEEEECCCCcchHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHHHHHHhCcEEEEEEE--ecCCCchhHHHHHHHhcCCce
Confidence 36888888889999999888899995555 4432 23455566888988766654 344433333334333333333
Q ss_pred cEee
Q psy14801 152 AVVL 155 (404)
Q Consensus 152 ~~~~ 155 (404)
.+.+
T Consensus 128 gILV 131 (312)
T KOG1014|consen 128 GILV 131 (312)
T ss_pred EEEE
Confidence 3444
No 219
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=68.42 E-value=38 Score=32.43 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=44.3
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...+.++++|+...+|..|.+++..|+.+|.+.++.+.. ++.|...++.+|++.++
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4556678888877888999999999999999887666543 46777888889986543
No 220
>PRK08226 short chain dehydrogenase; Provisional
Probab=68.31 E-value=44 Score=30.35 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=42.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+.. +..+..+..+...++.+
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVA--DVRDPASVAAAIKRAKE 78 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEEC--CCCCHHHHHHHHHHHHH
Confidence 568888899999999999889999976664322111223334445667666554 34444343333444433
No 221
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=68.30 E-value=38 Score=32.44 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=42.3
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
....++++++|+...+|..|.+++..|+.+|++.++++ ..+..|.+.++.+|++.++.
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEC
Confidence 44556777777666778999999999999999544444 24566777888889875543
No 222
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=44 Score=28.10 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=52.7
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCE-EEecCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q psy14801 49 PTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKMVVVMPM---------KMSKEKVYTMKA 118 (404)
Q Consensus 49 ptGS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~---------~~~~~k~~~l~~ 118 (404)
|.--+-++.+...+.+|.+.|- +. ||.+|+|.++.-+..+...- +++++|... ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4444667888888889988876 44 56666899987766655433 888887642 356777888899
Q ss_pred cCCEEEEeC
Q psy14801 119 LGAKIIRTQ 127 (404)
Q Consensus 119 ~Ga~v~~v~ 127 (404)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999988644
No 223
>PRK08628 short chain dehydrogenase; Provisional
Probab=67.87 E-value=50 Score=29.90 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=44.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
..+|+..+|--|.++|..-...|.+++++........-.+.++..|.++..+.. +..+.+...+...++.
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV--DLTDDAQCRDAVEQTV 78 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc--cCCCHHHHHHHHHHHH
Confidence 567888899999999998889999987765433222233455666777766654 3444433333333333
No 224
>PRK14030 glutamate dehydrogenase; Provisional
Probab=67.44 E-value=35 Score=34.23 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEE
Q psy14801 54 KDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVV 103 (404)
Q Consensus 54 K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv 103 (404)
--||..+.+..+.+. |..-.|.+|+..+.||-|..+|.....+|.+++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 346777777666544 44345789999999999999999999999999985
No 225
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=67.31 E-value=1.7e+02 Score=31.01 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=41.7
Q ss_pred CCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEEe
Q psy14801 74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM--------------S----KEKVYTMKALGAKIIRT 126 (404)
Q Consensus 74 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--------------~----~~k~~~l~~~Ga~v~~v 126 (404)
++.|+.-++|-.|.+.|...++.|+++++|-.... + ...++.++.+|.++..-
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 46899999999999999999999999999854321 1 12366778899988653
No 226
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.12 E-value=41 Score=31.69 Aligned_cols=56 Identities=30% Similarity=0.330 Sum_probs=42.1
Q ss_pred HhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+.+.+++|++|+. ..+|..|.++...|+.+|++++++. .+..|.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 4456677887755 4479999999999999999865543 356788888899986544
No 227
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.12 E-value=48 Score=30.00 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=45.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
..+|+..+|.-|.+++......|.+++++...... ..-.+.++..|.++..+.. +..+.+...+.+.++
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM--DVTNEDAVNAGIDKV 78 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC--CCCCHHHHHHHHHHH
Confidence 56889999999999999999999987766443211 2234455667888877664 444544443334443
No 228
>KOG2915|consensus
Probab=67.04 E-value=9.6 Score=35.33 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCC
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPF 218 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~ 218 (404)
.|+..++-+|+.+|+|+|+|+ .+++.++... .|.=+++-++-.
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGS--GSlShaiaraV~ptGhl~tfefH 139 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGS--GSLSHAIARAVAPTGHLYTFEFH 139 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCc--chHHHHHHHhhCcCcceEEEEec
Confidence 356667778999999999999 8888888654 465677766654
No 229
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=66.99 E-value=46 Score=28.59 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee---cCCCCC
Q psy14801 86 GIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL---DQFRNP 161 (404)
Q Consensus 86 g~a~A~~a~~~G~~~~iv~p~-~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~---~e~~np 161 (404)
|..+.++++.+|.+..--++. +.-..-.+.+...+..|.+++++. +...+.++.+.++.++.-.+ +.|+++
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~-----~~~~~~~~~l~~~yp~l~i~g~~~g~~~~ 85 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKP-----EVLEKAAERLRARYPGLKIVGYHHGYFGP 85 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCH-----HHHHHHHHHHHHHCCCcEEEEecCCCCCh
Confidence 577889999999873222222 112334555666789999998632 12233345666666654333 333332
Q ss_pred CChhhHHhhHHHHHHHHhCC-CcCEEEEccCCCh
Q psy14801 162 NNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGG 194 (404)
Q Consensus 162 ~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~ 194 (404)
. . -.++++++.. .||.++|..|+--
T Consensus 86 ~---~-----~~~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 86 E---E-----EEEIIERINASGADILFVGLGAPK 111 (171)
T ss_pred h---h-----HHHHHHHHHHcCCCEEEEECCCCH
Confidence 1 1 1225555543 5999999999876
No 230
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.98 E-value=53 Score=29.78 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=45.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+.. +..+.+...+..++..+.
T Consensus 17 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 17 VAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQV--DLTKPESAEKVVKEALEE 88 (258)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHHHHHHH
Confidence 567888899999999998889999988876542112223344556777666654 334444444444444443
No 231
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.90 E-value=23 Score=36.23 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
|+.+++.-+.|..|++.+..++.+|..++++ .....++++.+.+|++.+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 4578999999999999999999999885555 2345678899999999877764
No 232
>KOG0634|consensus
Probab=66.82 E-value=31 Score=34.16 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=35.3
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK 130 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~ 130 (404)
=+..|+||+-.---..--..+-.-+|++.+-+=..-++.++.+|++++.|+-+.
T Consensus 126 diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~ 179 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQ 179 (472)
T ss_pred eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccccC
Confidence 355566654432222233334455677777677778999999999999998743
No 233
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.09 E-value=95 Score=32.20 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
++++.++.|+.|+.+|..-+..|.+++++=+ .+++.+.++..|.+++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~G 466 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLG 466 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEc
Confidence 5799999999999999888888888766632 345566666666665543
No 234
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=65.93 E-value=55 Score=29.69 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=43.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
..+|+..++--|.++|......|.+++++-... .+...+.++..|.++..+.. +..+.++..+..++.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITA--DLIQQKDIDSIVSQA 77 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEe--CCCCHHHHHHHHHHH
Confidence 468888899999999999999999988764322 22334455667877766654 333433333333333
No 235
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=65.79 E-value=1e+02 Score=30.01 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-CC-ChhhHHHHHHHHHH----hC
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKS-YD-HPEGMIAGAHRIAS----QM 149 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~-~~-~~~~~~~~a~~l~~----~~ 149 (404)
.|+..++...+..++..+....=+-.|++|.-+-..-...++.+|++++.++.+.+ +. +.++ .++..+ ..
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~----l~~~~~~~~~~~ 168 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAA----AQSAIEQTQNPP 168 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHH----HHHHHHhhcCCC
Confidence 46665556777765554433322224555553334556677899999999985321 21 2222 222222 22
Q ss_pred CCcEeecCCCCCCChhh
Q psy14801 150 KNAVVLDQFRNPNNPLS 166 (404)
Q Consensus 150 ~~~~~~~e~~np~~si~ 166 (404)
...+|++...||+|..-
T Consensus 169 ~k~i~l~~P~NPTG~~~ 185 (374)
T PRK02610 169 VRVVFVVHPNSPTGNPL 185 (374)
T ss_pred ceEEEEeCCCCCCCCCC
Confidence 24566655689988543
No 236
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=65.71 E-value=65 Score=29.14 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=45.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++ .........+.++..+.++..+.. +..+.+...+..++..+
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTA--DLRKIDGIPALLERAVA 81 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 56889999999999999999999988765 222234445566667777776654 33333333333344333
No 237
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=65.64 E-value=27 Score=25.45 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCC-----CH----HHHHHHHHcCCEEEE
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM-----SK----EKVYTMKALGAKIIR 125 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-----~~----~k~~~l~~~Ga~v~~ 125 (404)
.++.-++|..|.-+|.+.+.+|.+++++..... ++ .-.+.++..|.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 378889999999999999999999999987532 11 123456667777654
No 238
>PLN02827 Alcohol dehydrogenase-like
Probab=65.30 E-value=45 Score=32.55 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=42.7
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+.+.+++|++|+...+|--|.+++..|+.+|.+.++.+. .++.|.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~--~~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD--INPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEE
Confidence 345677888887777899999999999999986555443 24678888899999644
No 239
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=65.02 E-value=64 Score=28.94 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=45.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+.. +..+.++..+..++..+
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r-~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGR-SEPSETQQQVEALGRRFLSLTA--DLSDIEAIKALVDSAVE 76 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcC-chHHHHHHHHHhcCCceEEEEC--CCCCHHHHHHHHHHHHH
Confidence 5678888899999999999999998777653 2223334556667777766664 34444444434444433
No 240
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.01 E-value=29 Score=29.43 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=39.7
Q ss_pred CEEEecCC--ChHHHHHHHHHHHcCCeEEEEecCC--CCHH--HH----HHHHHcCCEEEEeC
Q psy14801 75 YTIVEPSS--GNTGIGLAMVAAIKGYKMVVVMPMK--MSKE--KV----YTMKALGAKIIRTQ 127 (404)
Q Consensus 75 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~--k~----~~l~~~Ga~v~~v~ 127 (404)
.+|+..+. +|.+.|++..++++|+.++++.|.+ .+.. -+ +.....|.++..+.
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 45555553 6999999999999999999999997 5552 22 33455689988874
No 241
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=64.95 E-value=33 Score=29.32 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
+..-.|+.++..+-|.-|.++|...+.+|.+++|+ .+.+.+..+....|-++... ++..++
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~----------------~~a~~~ 78 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTL----------------EEALRD 78 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-H----------------HHHTTT
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCH----------------HHHHhh
Confidence 45556689999999999999999999999999887 45667766666677776522 112222
Q ss_pred CCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801 149 MKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217 (404)
Q Consensus 149 ~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p 217 (404)
. . +++.---|. +-+-.|.++++. .+.++..+|+-. .-|-+...... .++..-|.|
T Consensus 79 a-d-i~vtaTG~~-------~vi~~e~~~~mk--dgail~n~Gh~d--~Eid~~~L~~~-~~~~~~v~~ 133 (162)
T PF00670_consen 79 A-D-IFVTATGNK-------DVITGEHFRQMK--DGAILANAGHFD--VEIDVDALEAN-AVEREEVRP 133 (162)
T ss_dssp --S-EEEE-SSSS-------SSB-HHHHHHS---TTEEEEESSSST--TSBTHHHHHTC-TSEEEEEET
T ss_pred C-C-EEEECCCCc-------cccCHHHHHHhc--CCeEEeccCcCc--eeEeecccccc-CcEEEEcCC
Confidence 2 2 333211222 223356777774 478888888887 55555443333 344444444
No 242
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=64.85 E-value=44 Score=33.63 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q psy14801 55 DRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 55 ~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
-+|..+.+..+.+. +..-.|.+|+..+.||-|..+|.....+|.+++.+-
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 36777777666543 444467899999999999999999999998888554
No 243
>PRK08589 short chain dehydrogenase; Validated
Probab=64.82 E-value=52 Score=30.23 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=44.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..++--|.++|..-...|.+++++-.........+.++..|.++..+.. +..+.+...+..+++.++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHV--DISDEQQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEe--ecCCHHHHHHHHHHHHHH
Confidence 567888888999999998888999988875431111223445556766666654 333444443444444443
No 244
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=64.57 E-value=1.3e+02 Score=29.88 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=48.4
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcE
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV 153 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~ 153 (404)
..|+..+++..+..++..+- ..|=. |+++.-+=..-...++.+|++++.++.+.+.-+.+. .++..+.....+
T Consensus 142 ~~Iiit~G~~~al~~~~~~l~~pgd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~----l~~~~~~~~k~i 215 (431)
T PRK15481 142 FEIDLTSGAIDAIERLLCAHLLPGDS--VAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEK----LERALAQGARAV 215 (431)
T ss_pred CeEEEecCcHHHHHHHHHHhCCCCCE--EEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHH----HHHHHhcCCCEE
Confidence 46777777788877666542 33433 333332233446677889999999986422112222 222222233455
Q ss_pred eec-CCCCCCChhh
Q psy14801 154 VLD-QFRNPNNPLS 166 (404)
Q Consensus 154 ~~~-e~~np~~si~ 166 (404)
|+. ...||+|.+-
T Consensus 216 ~~~p~p~NPTG~~~ 229 (431)
T PRK15481 216 ILTPRAHNPTGCSL 229 (431)
T ss_pred EECCCCCCCCCccC
Confidence 664 7889987543
No 245
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=64.55 E-value=35 Score=29.08 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=41.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.+|+..++|+.|.+.+..+..+|.+.+++ .....+++..+..++..+.++.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 57888999999999999999999997776 2356778888999999888853
No 246
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=63.96 E-value=1.1e+02 Score=28.40 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC
Q psy14801 56 RAAWRMIEDAETAGVLKPGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALG 120 (404)
Q Consensus 56 R~a~~~l~~a~~~g~~~~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~G 120 (404)
+|...++.++.+.|. +.++.+=-- .+..-+-.+|.++|++.+.+++.+++..+++++....
T Consensus 109 ~Gie~F~~~~~~~Gv----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 109 YGIEKFLRRAKEAGV----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred hhHHHHHHHHHHcCC----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 344445555555555 444443332 4555555556666666666666666655555554444
No 247
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=63.86 E-value=17 Score=35.30 Aligned_cols=55 Identities=24% Similarity=0.152 Sum_probs=44.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQND 129 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~ 129 (404)
..++..+||..+.-+|..+...+=.-.|++|.-+...-...+...|+++++++.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 6799999999999999988444334778889988888899999999999999875
No 248
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.78 E-value=52 Score=31.71 Aligned_cols=56 Identities=25% Similarity=0.226 Sum_probs=40.8
Q ss_pred HhCCCCCCCEEEec-CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEP-SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMK-ALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~-~~Ga~v~~ 125 (404)
..+.+++|++|+.. .+|..|..+...|+.+|.++++. ..+..|.+.++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~---~~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGS---AGSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhcCCCEEE
Confidence 34566788887554 45999999999999999985544 23567777776 79986544
No 249
>PRK07402 precorrin-6B methylase; Provisional
Probab=63.74 E-value=20 Score=31.36 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+..-++..+.-.++..|++.|+|. ..++..+....++.++++++....
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~--G~~~~~la~~~~~~~V~~vD~s~~ 75 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGT--GTIPVEAGLLCPKGRVIAIERDEE 75 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCC--CHHHHHHHHHCCCCEEEEEeCCHH
Confidence 44444566666545778899999888 445555555567789999998753
No 250
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=63.52 E-value=1.2e+02 Score=30.75 Aligned_cols=126 Identities=15% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhCCCcE---
Q psy14801 89 LAMVAAIKGYKMVVVM-----------PMKMSKEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQMKNAV--- 153 (404)
Q Consensus 89 ~A~~a~~~G~~~~iv~-----------p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~~~~~--- 153 (404)
+..+|+..|+++++.. |..............|++.+....+..+. ..-+.++...+++++....+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 3458899999988865 22334566667777899988886642221 23344444455544322111
Q ss_pred --eecCCC-CCC-ChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 154 --VLDQFR-NPN-NPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 154 --~~~e~~-np~-~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
|-.+.. ... ++.. +.++....+-+.. +.+.+|+.+-||.++. .+....|..+++++.|+..
T Consensus 342 ~~~~~~~~~~~~~~~~~--~~ia~~a~~~a~~~~akaIVv~T~SG~TA~----~vSr~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTIT--EAIALSAVEAAEKLDAKAIVVLTESGRTAR----LLSKYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhcccccCCChH--HHHHHHHHHHHhhcCCCEEEEEcCChHHHH----HHHhhCCCCCEEEEcCCHH
Confidence 101100 010 1222 4444444433331 3578999999999433 4444578899999998664
No 251
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=63.24 E-value=9.4 Score=29.65 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.3
Q ss_pred cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 183 VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 183 ~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
|+..|+..|.|. ..+...+....++.++++|+....
T Consensus 1 p~~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~ 36 (112)
T PF12847_consen 1 PGGRVLDLGCGT--GRLSIALARLFPGARVVGVDISPE 36 (112)
T ss_dssp TTCEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHH
T ss_pred CCCEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHH
Confidence 455677777777 445556666778999999999754
No 252
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=63.01 E-value=54 Score=31.51 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=38.3
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+...++.+|+.-.+|..|.+++..|+.+|+ +++++ ..+..+...++.+|++-+
T Consensus 173 ~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~---~~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 173 GPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVI---DGSPERLELAREFGADAT 226 (361)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHcCCCeE
Confidence 444466776555689999999999999999 55444 235667778888888543
No 253
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=62.92 E-value=39 Score=29.56 Aligned_cols=127 Identities=16% Similarity=0.097 Sum_probs=68.1
Q ss_pred HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc----cCCCCCCCCCCCccccccCCCCccccc
Q psy14801 176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ----PQSLNDVPENQISYNEVEGIGYSFAAT 251 (404)
Q Consensus 176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~ 251 (404)
+.++.-+|+.+++.+|.|+ .+|+.-+....|..|+++++-+...... ...++. .......+-+...++.
T Consensus 27 ls~L~~~~g~~l~DIGaGt--Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGT--GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHhhCCCCCCEEEEeCCCc--cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEeccchHhhcC
Confidence 4455556888999988888 6666666667899999999986542110 011110 0001122211111111
Q ss_pred --ccCccccCcEEecChHHHHHHHHHHHHhcC-cEeccchhhHHHHHHHHHHhcCCCCeEEEEe
Q psy14801 252 --TLDRNVIDQWGKCGDKDTFLMARRLIKSEG-LLVGGSSGTAMHVACQAAKSLRPDQRCVVIL 312 (404)
Q Consensus 252 --~~~~~~~~~~~~v~d~e~~~~~~~l~~~~g-i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~ 312 (404)
.++..+.+.. .+-+++.+++-+..+.-| +|+-..|=-+++.+.+.++++.-. .++-+.
T Consensus 100 ~~~~daiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~ 160 (187)
T COG2242 100 LPSPDAIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQ 160 (187)
T ss_pred CCCCCEEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEE
Confidence 1222233332 455666666555444444 666666777777777777775432 444443
No 254
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.87 E-value=74 Score=28.34 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=46.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++.++.++..+.. +..+.+...+..+++.++
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA--DVADAAAVTRLFDAAETA 80 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHHHH
Confidence 56788889999999999999999988776543321 1223445667888877765 344444444444444433
No 255
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=61.97 E-value=67 Score=26.66 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=48.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKE----KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~----k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..++.-|+++|..-...|-..++++..+.+.+ ....++..|.++..++. +..+.+...+..+++.+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC--DLSDPESIRALIEEVIK 76 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES--ETTSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 3578888999999999988888877777766652222 23455778899888875 34455454444555553
No 256
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=61.75 E-value=47 Score=31.56 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=38.4
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
....++.+|+..++|..|.+++..|+.+|+..++++ ..++.|...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566776665789999999999999998434444 33467777788899864
No 257
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=61.62 E-value=80 Score=28.02 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=44.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+.++|..|.+++......|.+++++.....+ ....+.++..+.++..+.. +..+.+...+..+++.+
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG--DVSDAESVERAVDEAKA 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHHHHHH
Confidence 56888899999999999888889987666543221 1223334556778877765 34444333333344433
No 258
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=61.40 E-value=28 Score=27.26 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.+++++.-.++..|++.|.|. ...+..+....|+.+++++++...
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~--G~~~~~l~~~~~~~~v~~vD~s~~ 54 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGS--GSITIEAARLVPNGRVYAIERNPE 54 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCC--CHHHHHHHHHCCCceEEEEcCCHH
Confidence 345555434456889988888 666667777777889999998654
No 259
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=61.32 E-value=46 Score=32.34 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=30.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS 109 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~ 109 (404)
.+|-.-++|..|+.++.+|+++|++++++-|...+
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~ 36 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADA 36 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 46777889999999999999999999999987433
No 260
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=61.22 E-value=53 Score=31.17 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=39.2
Q ss_pred CCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 70 VLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 70 ~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+.++++|+...+|..|.+++..|+.+|.+.+++.+ ...+++.++.+|++-+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 211 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHY 211 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 456677777666899999999999999998555433 4567777888998543
No 261
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.22 E-value=33 Score=34.49 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-----MSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-----~~~~k~~~l~~~Ga~v~~ 125 (404)
.+++||.-++||.|.-+|..+.++|.+++++.... ......+.++..|.+++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 45789999999999999999999999999987642 123344567777888764
No 262
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=61.15 E-value=56 Score=32.13 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=39.4
Q ss_pred CEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQND 129 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~ 129 (404)
+.++..+||..|.-.|..+-. .|=++.++.-..-...=.+.++.+|++++.+..+
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 677888888888665555444 3778777765555556677789999998888764
No 263
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.85 E-value=62 Score=30.77 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=40.7
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
...++++.+|+...+|..|.+++..|+..|++.++.+... +.+.+.++.+|++-+
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v 217 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDI 217 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceE
Confidence 4455667777666789999999999999999865555433 567778888998533
No 264
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=60.70 E-value=34 Score=32.63 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=38.5
Q ss_pred CCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 72 KPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 72 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.+|++|+.-.+|..|.++...|+.+|.+.++++ ..++.|.+.++.+|++.++
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356676556678999999999999999644444 4566788888889986543
No 265
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.68 E-value=54 Score=31.17 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=40.0
Q ss_pred HHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+...+.++.+|+... +|..|.+++..|+.+|.+++++.. +. +++.++.+|++.+
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~~ 225 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADTV 225 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeEE
Confidence 3455667777766554 599999999999999999665542 22 6777788998743
No 266
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=60.60 E-value=61 Score=30.83 Aligned_cols=55 Identities=31% Similarity=0.274 Sum_probs=40.6
Q ss_pred HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEE
Q psy14801 67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKA-LGAKII 124 (404)
Q Consensus 67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~-~Ga~v~ 124 (404)
+.+.+++|++|+... +|.-|.+++..|+.+|.++++.. .+..|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 345667777765554 69999999999999999855543 34677888877 898644
No 267
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.28 E-value=52 Score=31.52 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.....++++++|+...+|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++-+
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 34556677788776678899999999999999975554433 3567778888888543
No 268
>PLN02256 arogenate dehydrogenase
Probab=60.18 E-value=1.6e+02 Score=27.98 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=66.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 154 (404)
.+|..-+.|+.|.++|...+..|.+++++-+.. . .+..+.+|... +. +.. ++.......++
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~---~-~~~a~~~gv~~--~~------~~~-------e~~~~~aDvVi 97 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD---Y-SDIAAELGVSF--FR------DPD-------DFCEEHPDVVL 97 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc---H-HHHHHHcCCee--eC------CHH-------HHhhCCCCEEE
Confidence 567777899999999999999998888776553 1 23444577642 11 111 11111123343
Q ss_pred ecCCCCCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCC-CcEEEEEcCCCC
Q psy14801 155 LDQFRNPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCP-SCKLVGADPFGS 220 (404)
Q Consensus 155 ~~e~~np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~-~~~vi~V~p~~~ 220 (404)
+ .-|. ....++++++. -+++.+|+.++|.= ..+..++....+ +.++++..|--.
T Consensus 98 l---avp~-------~~~~~vl~~l~~~~l~~~~iviDv~SvK--~~~~~~~~~~l~~~~~~V~~HPmaG 155 (304)
T PLN02256 98 L---CTSI-------LSTEAVLRSLPLQRLKRSTLFVDVLSVK--EFPKNLLLQVLPEEFDILCTHPMFG 155 (304)
T ss_pred E---ecCH-------HHHHHHHHhhhhhccCCCCEEEecCCch--HHHHHHHHHhCCCCCeEEecCCCCC
Confidence 3 1121 12234555542 14788999999953 234445555544 468999888553
No 269
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.16 E-value=69 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+.++..-+.|..|.+++..++.+|.+++++-. +..+..+.+.+|++.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r---~~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGAR---KSAHLARITEMGLSPF 199 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCeee
Confidence 467888888999999999999999997777633 2455677778887754
No 270
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.94 E-value=55 Score=30.87 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=39.6
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
+...++++.+|+...+|..|.+++..++.+|++++++.+. ..+++.++.+|++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 4556677777766678899999999999999887665443 3567777888874
No 271
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.89 E-value=72 Score=28.79 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=36.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|..|.++|......|.+++++-....+ ....+.++..|.++..+..
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 56788889999999999988899987665332111 1123345555777776654
No 272
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=59.83 E-value=73 Score=29.42 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEec
Q psy14801 55 DRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105 (404)
Q Consensus 55 ~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 105 (404)
-||..+.+..+.+. +..-.|.+|+..+-||-|..+|.+...+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 36777777666443 4434578999999999999999999999998887654
No 273
>PRK07478 short chain dehydrogenase; Provisional
Probab=59.79 E-value=67 Score=28.98 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=43.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|..-...|.+++++.....+. .-.+.++..|.++..+.. +..+.+...+..+++.++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAG--DVRDEAYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc--CCCCHHHHHHHHHHHHHh
Confidence 467888888999999998888999877764321111 112345556777766654 344444444444444443
No 274
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=59.68 E-value=74 Score=29.19 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=36.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+..
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56788888999999999988999987776543211 1223334556777666654
No 275
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=59.67 E-value=64 Score=30.30 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=39.1
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
.+.++++.+|+...+|..|.+++..|+.+|.+++ ++....+..+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 3455666676555678999999999999999954 33333446777888888874
No 276
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=59.55 E-value=73 Score=27.39 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=60.4
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA 152 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~ 152 (404)
.|.+|..-+.|+-|+++|..++.+|++++.+=|...+.. .....+.+.. +. +++.++. ..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~~---------~l-------~ell~~a-Di 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEYV---------SL-------DELLAQA-DI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEES---------SH-------HHHHHH--SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccceee---------eh-------hhhcchh-hh
Confidence 467999999999999999999999999999876553322 2334443211 11 2233333 33
Q ss_pred Eee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHH
Q psy14801 153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198 (404)
Q Consensus 153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~G 198 (404)
+.. .+ .+|.+ . .-+..+.++++ +++.++|-++-|..+--
T Consensus 95 v~~~~p-lt~~T--~--~li~~~~l~~m--k~ga~lvN~aRG~~vde 134 (178)
T PF02826_consen 95 VSLHLP-LTPET--R--GLINAEFLAKM--KPGAVLVNVARGELVDE 134 (178)
T ss_dssp EEE-SS-SSTTT--T--TSBSHHHHHTS--TTTEEEEESSSGGGB-H
T ss_pred hhhhhc-ccccc--c--eeeeeeeeecc--ccceEEEeccchhhhhh
Confidence 333 33 23321 2 23344666666 47899999999996643
No 277
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.29 E-value=59 Score=31.19 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=45.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..||--|.++|......|.+++++...... ..-.+.++..|+++..+.. +..+.+...+.+++..+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~--Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPT--DVTDADQVKALATQAASF 81 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEe--eCCCHHHHHHHHHHHHHh
Confidence 45788888899999999999999997776432111 1123455677888876654 344554444444444443
No 278
>PRK06128 oxidoreductase; Provisional
Probab=59.22 E-value=1.1e+02 Score=28.55 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|--|.++|..-...|.++++...... .....+.++..|.+++.+.. +..+.+...+..++..+
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPG--DLKDEAFCRQLVERAVK 130 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEec--CCCCHHHHHHHHHHHHH
Confidence 5788999999999999998899999877643221 12234456677888777665 34444444444444444
No 279
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=58.96 E-value=1.4e+02 Score=29.17 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCCChhhHHHHHHHHHHHHhCC--CCCCCEE--EecCCChHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHcCC
Q psy14801 49 PTGSLKDRAAWRMIEDAETAGV--LKPGYTI--VEPSSGNTGIGLAMVAA---IKGYKMVVVMPMKMSKEKVYTMKALGA 121 (404)
Q Consensus 49 ptGS~K~R~a~~~l~~a~~~g~--~~~~~~v--v~~ssGN~g~a~A~~a~---~~G~~~~iv~p~~~~~~k~~~l~~~Ga 121 (404)
+.|....|-+..-. ....+. +.+ +.| +..+++..|..++..+- ..|= .|++|.-+-..-...++.+|+
T Consensus 68 ~~G~~~lR~aia~~--~~~~~~~~~~~-~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 68 IEGLAAYRQAVQEL--LFGADSPALAA-GRVATVQTPGGTGALRVGADFLKRAFPDA--KVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred CCCCHHHHHHHHHH--hcCCCCccccc-CeEEEEecCCccHHHHHHHHHHHHhCCCC--eEEECCCCcccHHHHHHHcCC
Confidence 45777777554322 122221 133 344 55556688877775322 3453 445555333344667788999
Q ss_pred EEEEeCC--CCCCC-ChhhHHHHHHHHHHhCC-CcEee-cCCCCCCChh
Q psy14801 122 KIIRTQN--DKSYD-HPEGMIAGAHRIASQMK-NAVVL-DQFRNPNNPL 165 (404)
Q Consensus 122 ~v~~v~~--~~~~~-~~~~~~~~a~~l~~~~~-~~~~~-~e~~np~~si 165 (404)
+++.++- ..++. +.+... +.+.+..+ ..+|+ +...||+|.+
T Consensus 143 ~~v~v~~~~~~~~~~d~~~l~---~~~~~~~~~~~~~i~~~p~NPTG~~ 188 (396)
T PRK09257 143 EVKTYPYYDAATKGLDFDAML---ADLSQAPAGDVVLLHGCCHNPTGAD 188 (396)
T ss_pred cEEEEeccccccCccCHHHHH---HHHHhCCCCCEEEEeCCCCCCCCCC
Confidence 9998874 11121 222221 12221112 34554 7789998854
No 280
>PRK05370 argininosuccinate synthase; Validated
Probab=58.81 E-value=2e+02 Score=28.82 Aligned_cols=129 Identities=14% Similarity=0.056 Sum_probs=76.0
Q ss_pred CEE-EecCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC-----HHHHHHHHHcCC-EEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 75 YTI-VEPSSG-NTGIGLAMVAAIKGYKMVVVMPM-KMS-----KEKVYTMKALGA-KIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 75 ~~v-v~~ssG-N~g~a~A~~a~~~G~~~~iv~p~-~~~-----~~k~~~l~~~Ga-~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
.+| +..|+| ++-..+-+.-.. |+.++.|.-+ +.+ ..-.+....+|| +++.++.. ++.++..-..
T Consensus 12 ~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr------~eF~e~~i~a 84 (447)
T PRK05370 12 QRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCR------AQLVAEGIAA 84 (447)
T ss_pred CEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccH------HHHHHHHHHH
Confidence 455 555555 888888888777 9998888754 221 244566788899 68877652 2222222122
Q ss_pred HHhCCCcEee----cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEcc-CCChhHHHHHHHHHHhCCCcEEEE
Q psy14801 146 ASQMKNAVVL----DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGC-GTGGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 146 ~~~~~~~~~~----~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~-gsG~~~~Gi~la~~~~~~~~~vi~ 214 (404)
.+. +..|. ..|.+.. + -...-+|..+++-+.+ ..+.+.-.+ |-||-..=.=+++....|..++|+
T Consensus 85 I~a--nA~Y~~~~e~~Y~l~t-~-LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Via 155 (447)
T PRK05370 85 IQC--GAFHISTGGVTYFNTT-P-LGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYK 155 (447)
T ss_pred HHc--CCccccccCccccCCC-c-chHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEec
Confidence 221 22331 1122222 1 2235667777776653 245554443 468877778888999999888776
No 281
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.79 E-value=86 Score=27.92 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=42.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
..+|+.++|..|.+++......|.+++++.....+ ......+...|.+++.+.. +..+.....+..++..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA--DVSDYEEVTAAIEQLK 79 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC--CCCCHHHHHHHHHHHH
Confidence 56888889999999999888899987776533211 1112334556777776654 3334433333334333
No 282
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.50 E-value=32 Score=36.37 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred CChhhHHHHHHHH-HHHHhCCC------C-CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC---------C-----
Q psy14801 51 GSLKDRAAWRMIE-DAETAGVL------K-PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK---------M----- 108 (404)
Q Consensus 51 GS~K~R~a~~~l~-~a~~~g~~------~-~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---------~----- 108 (404)
++.-++.+...+. .+.+.|.. . .+++|+.-++|-.|++.|...++.|++++||-... .
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l 358 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL 358 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC
Confidence 4566666654433 34444421 1 26789999999999999999999999999985332 1
Q ss_pred C----HHHHHHHHHcCCEEEEe
Q psy14801 109 S----KEKVYTMKALGAKIIRT 126 (404)
Q Consensus 109 ~----~~k~~~l~~~Ga~v~~v 126 (404)
+ ....+.++.+|.+++.-
T Consensus 359 ~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 359 DKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CHHHHHHHHHHHHHCCeEEEcC
Confidence 1 12567778899887653
No 283
>PTZ00376 aspartate aminotransferase; Provisional
Probab=58.00 E-value=1.7e+02 Score=28.83 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=54.8
Q ss_pred CCCChhhHHHHHHHHHHHHhC--CCCCCCEEE-ecCCChHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 49 PTGSLKDRAAWRMIEDAETAG--VLKPGYTIV-EPSSGNTGIGLAMVA--AIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 49 ptGS~K~R~a~~~l~~a~~~g--~~~~~~~vv-~~ssGN~g~a~A~~a--~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
+.|.-..|-+..-.. ...+ .+.+...++ ...+|+.+..++..+ ....=.-.|++|.=+=..-...++..|+++
T Consensus 71 ~~G~~~lR~aia~~~--~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~ 148 (404)
T PTZ00376 71 IEGLQSFIEAAQKLL--FGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNV 148 (404)
T ss_pred CCCCHHHHHHHHHHh--cCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCce
Confidence 357777775543321 1222 124433333 244557776666532 222222344445433344466788999999
Q ss_pred EEeCCC--CCCC-ChhhHHHHHHHHHH-hCCCcEe-ecCCCCCCChhh
Q psy14801 124 IRTQND--KSYD-HPEGMIAGAHRIAS-QMKNAVV-LDQFRNPNNPLS 166 (404)
Q Consensus 124 ~~v~~~--~~~~-~~~~~~~~a~~l~~-~~~~~~~-~~e~~np~~si~ 166 (404)
+.++-. .++. +.+... +.+.+ ..+..++ ++...||+|.+-
T Consensus 149 ~~v~l~~~~~~~~d~~~l~---~~~~~~~~~~~~~~~~~p~NPTG~~~ 193 (404)
T PTZ00376 149 KEYRYYDPKTKGLDFDGML---EDLRTAPNGSVVLLHACAHNPTGVDP 193 (404)
T ss_pred eeccccCcccCCcCHHHHH---HHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 999851 1111 222221 22221 1122344 478899988643
No 284
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=57.83 E-value=66 Score=31.28 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=40.5
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
..+.++++++|+..++|.-|.+++..++.+|.+-++++. .+..+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 446667778877667899999999999999994444442 345778888889985
No 285
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=57.66 E-value=66 Score=31.24 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=41.1
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
....+.++++|+....|..|.+++..|+.+|.+.++++ ..+..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 34455677777667789999999999999998544443 34578888889999853
No 286
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=57.28 E-value=1.5e+02 Score=28.19 Aligned_cols=95 Identities=9% Similarity=-0.071 Sum_probs=50.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 154 (404)
..|+...++..+..++...-..| + ++++.-+-..=....+.+|++++.++-+. +....+ ..+ +.....+|
T Consensus 58 ~~I~it~Gs~~~l~~~~~~~~~~-~--vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~~~~~~---~l~---~~~~k~v~ 127 (332)
T PRK06425 58 IKVLIGPGLTHFIYRLLSYINVG-N--IIIVEPNFNEYKGYAFTHGIRISALPFNL-INNNPE---ILN---NYNFDLIF 127 (332)
T ss_pred ceEEECCCHHHHHHHHHHHhCCC-c--EEEeCCChHHHHHHHHHcCCeEEEEeCCc-ccCcHH---HHh---hcCCCEEE
Confidence 45666666677776665422223 3 44443223444556788999999998632 211111 111 12234567
Q ss_pred ecCCCCCCChhhHHhhHHHHHHHHhC
Q psy14801 155 LDQFRNPNNPLSHYETTAEEILRDTG 180 (404)
Q Consensus 155 ~~e~~np~~si~g~~~~a~ei~~q~~ 180 (404)
++...||+|.+--.++ -.+|++.+.
T Consensus 128 l~nP~NPTG~~~s~~~-~~~l~~~a~ 152 (332)
T PRK06425 128 IVSPDNPLGNLISRDS-LLTISEICR 152 (332)
T ss_pred EeCCCCCcCCccCHHH-HHHHHHHHH
Confidence 7667899875432122 235555554
No 287
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=57.19 E-value=24 Score=32.37 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.+....+++.+...++..|+..|.|. ..+...+....|+.+++++++...
T Consensus 15 ~~~~~~ll~~l~~~~~~~vLDlGcG~--G~~~~~l~~~~p~~~v~gvD~s~~ 64 (255)
T PRK14103 15 GRPFYDLLARVGAERARRVVDLGCGP--GNLTRYLARRWPGAVIEALDSSPE 64 (255)
T ss_pred hCHHHHHHHhCCCCCCCEEEEEcCCC--CHHHHHHHHHCCCCEEEEEECCHH
Confidence 45556777777655566788888877 445566666778889999999654
No 288
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=57.02 E-value=51 Score=32.93 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCEEEecCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q psy14801 74 GYTIVEPSS---GNTGIGLAMVAAIK-GYKMVVVMPMKM--SKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 74 ~~~vv~~ss---GN~g~a~A~~a~~~-G~~~~iv~p~~~--~~~k~~~l~~~Ga~v~~v~ 127 (404)
|.+|+..+. +|.+.|++..++.+ |++++++-|++. +..-.+.++..|..+..+.
T Consensus 241 G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 241 GAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 456666666 37778877775554 888888887753 3344455556677766553
No 289
>PRK10083 putative oxidoreductase; Provisional
Probab=56.97 E-value=73 Score=30.19 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=42.4
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.....++++++|+...+|--|.+++..|+. +|.+.++.+. .++.|.+.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 210 (339)
T PRK10083 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVAD--RIDERLALAKESGADWV 210 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEc--CCHHHHHHHHHhCCcEE
Confidence 445667788887777788888888888886 6988666653 35688888889999644
No 290
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.88 E-value=1.7e+02 Score=30.84 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
.+++.++.|..|+.+|..-...|++++++= ..+.+.+.++.+|..++.-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~G 449 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYG 449 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEe
Confidence 579999999999999988888888887763 3355666677777666544
No 291
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.78 E-value=33 Score=33.58 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 72 KPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 72 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+++++|+...+|.-|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 46788887788999999999999999985554332 2334666778898644
No 292
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.70 E-value=52 Score=31.87 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=38.2
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+..++|++|+...+|.-|.+++..|+.+|.+.+++... +..+...++.+|++-++
T Consensus 179 ~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 44567788887888999999999999999986554332 22334455678886443
No 293
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=56.65 E-value=1.5e+02 Score=28.24 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=45.0
Q ss_pred HHhCCCCCCCEE-EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q psy14801 66 ETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKA-LGAKIIR 125 (404)
Q Consensus 66 ~~~g~~~~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~-~Ga~v~~ 125 (404)
+.-|..++|.+| |++.+|-.|.-+.-.|+..|++++-+.. +++|.+.+.. +|-+..+
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 445777777875 6777999998889999999999998864 5788888888 7776554
No 294
>PRK06114 short chain dehydrogenase; Provisional
Probab=56.62 E-value=1.3e+02 Score=27.11 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=37.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|--|.++|..-...|.++++....... ....+.++..|.++..+..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 56788888899999999888899988877543221 2223455666777766654
No 295
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.61 E-value=31 Score=34.21 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
+....|++|+..+.|+-|..+|..++.+|.+++++ .. .+.+.......|.++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~--dp~r~~~A~~~G~~v 241 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVT-EV--DPIRALEAAMDGFRV 241 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEE-eC--ChhhHHHHHhcCCEe
Confidence 44456789999999999999999999999996664 22 223444445567754
No 296
>PRK07324 transaminase; Validated
Probab=56.60 E-value=80 Score=30.71 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=44.6
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--CCC-ChhhHHHHHHHHHHhCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK--SYD-HPEGMIAGAHRIASQMK 150 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~--~~~-~~~~~~~~a~~l~~~~~ 150 (404)
+.|+..+++..+..++..+- ..|=+ |+++.-.-..-...++.+|++++.++.+. ++. +.++ .++......
T Consensus 81 ~~vi~t~G~~~al~~~~~~l~~~gd~--Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~----l~~~~~~~~ 154 (373)
T PRK07324 81 ENILQTNGATGANFLVLYALVEPGDH--VISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDE----LRRLVRPNT 154 (373)
T ss_pred hhEEEcCChHHHHHHHHHHhCCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHH----HHHhCCCCC
Confidence 35666666667766555442 22433 34443222333456788999999988632 121 2211 222222222
Q ss_pred CcEeecCCCCCCChhh
Q psy14801 151 NAVVLDQFRNPNNPLS 166 (404)
Q Consensus 151 ~~~~~~e~~np~~si~ 166 (404)
..++++...||.|.+-
T Consensus 155 kli~i~~p~NPtG~~~ 170 (373)
T PRK07324 155 KLICINNANNPTGALM 170 (373)
T ss_pred cEEEEeCCCCCCCCCC
Confidence 3455666678887543
No 297
>PRK07550 hypothetical protein; Provisional
Probab=56.54 E-value=2e+02 Score=27.98 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCChhhHHHHHHHHHHHHhCC-CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 50 TGSLKDRAAWRMIEDAETAGV-LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 50 tGS~K~R~a~~~l~~a~~~g~-~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.|.-..|.+..-.... ..|. ..+ ..|+..+++..+..++..+- .+-.-.|++|.-.-..-...++..|++++.++.
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~-~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP-EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc-ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 4666666444322111 1232 223 45666666677876665443 233345666653333344567889999999986
Q ss_pred C
Q psy14801 129 D 129 (404)
Q Consensus 129 ~ 129 (404)
+
T Consensus 144 ~ 144 (386)
T PRK07550 144 D 144 (386)
T ss_pred C
Confidence 3
No 298
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.53 E-value=1.6e+02 Score=31.17 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=39.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.+|+.++.|..|+.+|..-...|++++++ +.++.+.+.++.+|.+++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 57999999999999999888889988777 3445667777777777665443
No 299
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=56.45 E-value=1.1e+02 Score=27.60 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=44.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+.++|.-|.++|......|.+++++.....+. ...+.++..|.++..+.. +..+.....+..+++.+
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG--DVTVESDVVNLIQTAVK 81 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe--cCCCHHHHHHHHHHHHH
Confidence 567888899999999999999999887765533222 223345566877776654 33344333333344433
No 300
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=56.38 E-value=83 Score=29.51 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=34.4
Q ss_pred CCEE-EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 74 GYTI-VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 74 ~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+++| |...+|..|.+++..|+.+|.++++.. .+..+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVAST---GKADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEe---cCHHHHHHHHHcCCCEE
Confidence 4455 555569999999999999999865443 23566777788887443
No 301
>PRK07454 short chain dehydrogenase; Provisional
Probab=56.18 E-value=83 Score=28.06 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=42.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+.++|..|.+++......|.+++++....... .-.+.++..+.++..+.. +..+.+...+..+++.+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSI--DLSNPEAIAPGIAELLE 79 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 457888899999999999999999877765322111 112234455666666654 33344343333444443
No 302
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=56.17 E-value=1.1e+02 Score=31.64 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=45.7
Q ss_pred HhCCCCCCCEEEecCC---ChHHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q psy14801 67 TAGVLKPGYTIVEPSS---GNTGIGLAMVAAIKG-YKMVVVMPMKM--SKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ss---GN~g~a~A~~a~~~G-~~~~iv~p~~~--~~~k~~~l~~~Ga~v~~v~ 127 (404)
..|..-.|.+|+..+. +|.+.|++..++.+| ++++++.|... +..-.+.++..|+.+..+.
T Consensus 167 ~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 167 QNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred HcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3452234578877777 588999999999998 99999999864 4455566777898887664
No 303
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=56.06 E-value=84 Score=28.60 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=43.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+.. +..+.....+...+..+
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVC--DVTDEDGVQAMVSQIEK 83 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHHHHHH
Confidence 56888889999999999889999997766322111 1123345556777777665 34444444444444433
No 304
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.97 E-value=1.1e+02 Score=27.45 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=44.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+.. +..+..+..+..+++.++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPA--DVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEe--cCCCHHHHHHHHHHHHHh
Confidence 46788899999999999888889988776533221 1233445556777766654 344444444444444443
No 305
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.85 E-value=88 Score=29.00 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=38.2
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK-MVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
+...++++.+|+.-++|-.|.+++..|+.+|++ .+++ .. .+.+.+.++.+|++-
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~~ 177 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGATE 177 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCce
Confidence 355566777765556788999999999999998 5443 22 355667778888743
No 306
>PRK08912 hypothetical protein; Provisional
Probab=55.81 E-value=2e+02 Score=27.90 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHHHHhCC-CCCCCEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 50 TGSLKDRAAWRMIEDAETAGV-LKPGYTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 50 tGS~K~R~a~~~l~~a~~~g~-~~~~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
.|....|-+..-... ...|. ..|...|+..+++..+..++..+-. .|= .|++|.-.-..-...++.+|++++.++
T Consensus 63 ~G~~~lr~~ia~~~~-~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 139 (387)
T PRK08912 63 MGLPELRQAVAAHYA-RFQGLDLDPETEVMVTSGATEALAAALLALVEPGD--EVVLFQPLYDAYLPLIRRAGGVPRLVR 139 (387)
T ss_pred CCcHHHHHHHHHHHH-HHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCC--EEEEeCCCchhhHHHHHHcCCEEEEEe
Confidence 465555544432211 11232 2333257777777888765554432 232 444454333334556789999999887
Q ss_pred CCC-CCC-ChhhHHHHHHHHHHhCCCcEeecCCCCCCChh
Q psy14801 128 NDK-SYD-HPEGMIAGAHRIASQMKNAVVLDQFRNPNNPL 165 (404)
Q Consensus 128 ~~~-~~~-~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si 165 (404)
.+. ++. +.+. .++........+++..-.||.|.+
T Consensus 140 ~~~~~~~~~~~~----l~~~~~~~~~~v~l~~p~NPtG~~ 175 (387)
T PRK08912 140 LEPPHWRLPRAA----LAAAFSPRTKAVLLNNPLNPAGKV 175 (387)
T ss_pred cCcccCcCCHHH----HHHHhCccceEEEEeCCCCCcCcc
Confidence 531 121 1111 222222222345555557887743
No 307
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=55.76 E-value=33 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
+.+...+++.+.-.++..|++.|+|+ ..+++.+....|+.++++++....
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~v~~vD~s~~ 66 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGT--GSVSIEAALQFPSLQVTAIERNPD 66 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHHHHCCCCEEEEEECCHH
Confidence 33333444555434566889999988 445555555678889999998754
No 308
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=55.61 E-value=2.1e+02 Score=27.88 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=43.9
Q ss_pred EEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--CCC-ChhhHHHHHHHHHHhCCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK--SYD-HPEGMIAGAHRIASQMKN 151 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~--~~~-~~~~~~~~a~~l~~~~~~ 151 (404)
.|+..+++..+..++..+- ..|=.+++--|. -+ .-...++.+|++++.++-+. .+. +.++. .+.+.. ...
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~-y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l---~~~~~~-~~k 167 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGDFALLLDPG-YP-SHAGGVYLAGGQIYPMPLRAENDFLPVFADI---PTEVLA-QAR 167 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCCEEEEcCCC-Cc-chHHHHHhcCCEEEEEECCCccCCCCCHHHH---HHhhcc-cce
Confidence 4665556677766555432 234333333332 22 22455677999999987632 121 11111 112212 224
Q ss_pred cEeecCCCCCCChhh
Q psy14801 152 AVVLDQFRNPNNPLS 166 (404)
Q Consensus 152 ~~~~~e~~np~~si~ 166 (404)
.++++...||+|.+-
T Consensus 168 ~i~l~~p~NPTG~~~ 182 (388)
T PRK07366 168 LMVLSYPHNPTTAIA 182 (388)
T ss_pred EEEEeCCCCCCCccC
Confidence 567766789988653
No 309
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=55.56 E-value=1.1e+02 Score=30.92 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=51.7
Q ss_pred CCChhhHHHHHHHHHH-HHhCC-------CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC-------------
Q psy14801 50 TGSLKDRAAWRMIEDA-ETAGV-------LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM------------- 108 (404)
Q Consensus 50 tGS~K~R~a~~~l~~a-~~~g~-------~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~------------- 108 (404)
.++..++.+...+.+. ...+. ...+..|+.-++|-.|.+.|...++.|.++++|-....
T Consensus 111 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~ 190 (471)
T PRK12810 111 FGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFK 190 (471)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCccc
Confidence 3566777776554433 33231 12246899999999999999999999999999864311
Q ss_pred -C----HHHHHHHHHcCCEEEE
Q psy14801 109 -S----KEKVYTMKALGAKIIR 125 (404)
Q Consensus 109 -~----~~k~~~l~~~Ga~v~~ 125 (404)
+ ....+++..+|.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 191 LEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCHHHHHHHHHHHHhCCcEEEe
Confidence 1 1245677888988764
No 310
>PLN00175 aminotransferase family protein; Provisional
Probab=55.42 E-value=2.2e+02 Score=28.15 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=44.0
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-CCC-ChhhHHHHHHHHHHhCCCcE
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK-SYD-HPEGMIAGAHRIASQMKNAV 153 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~-~~~-~~~~~~~~a~~l~~~~~~~~ 153 (404)
.|+..+++..|..++..+- ..-.-.|+++.-.-..-...++.+|++++.++-.. ++. +.++ .++........+
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~----l~~~~~~~~k~i 191 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDE----LKAAFTSKTRAI 191 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHH----HHHhcCcCceEE
Confidence 4666556677766655543 22222344443222334556788999999987531 122 1111 222222222346
Q ss_pred eecCCCCCCChh
Q psy14801 154 VLDQFRNPNNPL 165 (404)
Q Consensus 154 ~~~e~~np~~si 165 (404)
++....||.|.+
T Consensus 192 ~i~~p~NPtG~~ 203 (413)
T PLN00175 192 LINTPHNPTGKM 203 (413)
T ss_pred EecCCCCCCCcC
Confidence 666667888754
No 311
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=55.20 E-value=87 Score=28.76 Aligned_cols=49 Identities=31% Similarity=0.373 Sum_probs=30.2
Q ss_pred CEEEecCCChHH-HH--HHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEE
Q psy14801 75 YTIVEPSSGNTG-IG--LAMVAAIKGYKMVVVMPMKMSK----EKVYTMKALGAKI 123 (404)
Q Consensus 75 ~~vv~~ssGN~g-~a--~A~~a~~~G~~~~iv~p~~~~~----~k~~~l~~~Ga~v 123 (404)
..+|.++.||.| -+ +|...+..|+++.+|++...+. ...++++.+|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 456778888544 44 4445555699999999654322 2234556667554
No 312
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.07 E-value=94 Score=29.56 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+...++++++|+.-++|..|.+++..|+.+|.+.++++ ..+..+...++.+|++-+
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~v 211 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVT--DIDPSRLEFAKELGATHT 211 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHcCCcEE
Confidence 356777788887666677888888999999999843333 223566677777777543
No 313
>PRK07806 short chain dehydrogenase; Provisional
Probab=55.04 E-value=1.3e+02 Score=26.84 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=42.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-H-HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-E-KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~-k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
..+|+..+|--|.+++......|.+++++.....+. . -...++..|.++..+.. +..+.++..+..+++.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA--DLTDEESVAALMDTAR 79 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHHHHH
Confidence 467888899999999998888999987765432111 1 12234555766666654 3444444433344433
No 314
>PRK12831 putative oxidoreductase; Provisional
Probab=54.70 E-value=50 Score=33.43 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC---CC--HHHHHHHHHcCCEEEEe
Q psy14801 72 KPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK---MS--KEKVYTMKALGAKIIRT 126 (404)
Q Consensus 72 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---~~--~~k~~~l~~~Ga~v~~v 126 (404)
..++.|+.-++||.|.-+|..+.++|.+++++.... ++ ...++.++..|.+++.-
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 356799999999999999999999999988887642 22 23445566778877643
No 315
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=54.51 E-value=74 Score=31.22 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=40.5
Q ss_pred CCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 69 GVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 69 g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
..+.++.+|+. ..+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 44566667654 4469999999999999999875543 3456788888899876643
No 316
>PLN02702 L-idonate 5-dehydrogenase
Probab=54.38 E-value=98 Score=29.79 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=42.4
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...+.++.+|+.-.+|..|.++...++.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3455566777666578899999999999999986555543 47778888889987554
No 317
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=54.24 E-value=52 Score=28.16 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=30.8
Q ss_pred CCCEEEecCCChHH-H--HHHHHHHHcCCeEEEEe--cC-CCCH---HHHHHHHHcCCEEEEe
Q psy14801 73 PGYTIVEPSSGNTG-I--GLAMVAAIKGYKMVVVM--PM-KMSK---EKVYTMKALGAKIIRT 126 (404)
Q Consensus 73 ~~~~vv~~ssGN~g-~--a~A~~a~~~G~~~~iv~--p~-~~~~---~k~~~l~~~Ga~v~~v 126 (404)
+...+|-++.||.| - ++|..-+..|+++++++ |. ..++ ...+.++.+|.+++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 33567888888665 4 44445556799998854 22 2222 3455667777666543
No 318
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.07 E-value=1.7e+02 Score=26.45 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=44.9
Q ss_pred CEEEecCC--ChHHHHHHHHHHHcCCeEEEEec----CCC----CH----HHHHHHHHcCCEEEEeCCCCCCCChhhHHH
Q psy14801 75 YTIVEPSS--GNTGIGLAMVAAIKGYKMVVVMP----MKM----SK----EKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140 (404)
Q Consensus 75 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p----~~~----~~----~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~ 140 (404)
..+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+.. +..+.++..+
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--D~~~~~~i~~ 85 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMEL--DLTQNDAPKE 85 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEc--CCCCHHHHHH
Confidence 45666666 37899999999999998777521 110 11 123446677988887765 3445545545
Q ss_pred HHHHHHHhC
Q psy14801 141 GAHRIASQM 149 (404)
Q Consensus 141 ~a~~l~~~~ 149 (404)
...++.++.
T Consensus 86 ~~~~~~~~~ 94 (256)
T PRK12859 86 LLNKVTEQL 94 (256)
T ss_pred HHHHHHHHc
Confidence 555555443
No 319
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=54.05 E-value=1.3e+02 Score=26.80 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=44.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+.+++...... ....+.++..|.+++.... +..+.....+...+..+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEG--NVGDWDSTKAAFDKVKA 77 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEc--CCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999987665432211 1224445566888776654 34444443333344433
No 320
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.67 E-value=1.4e+02 Score=26.67 Aligned_cols=54 Identities=26% Similarity=0.347 Sum_probs=38.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|..++..-...|.+++++.....+. ...+.++..|.++..+..
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888899999999999999999887754433221 223455667888777765
No 321
>PRK08643 acetoin reductase; Validated
Probab=53.58 E-value=1.1e+02 Score=27.55 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=42.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+.++|.-|.++|......|.+++++....... .-...+...|.++..+.. +..+.+...+...++.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA--DVSDRDQVFAAVRQVVD 75 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 457888899999999999989999876664322111 112234455677766654 34444443333444443
No 322
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.55 E-value=89 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=27.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
..+|+.++|..|.+++......|.+++++...
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 45788889999999999999999988877543
No 323
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=53.53 E-value=1e+02 Score=27.66 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=44.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+.. +..+.+...+...++.++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL--DVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc--CCCCHHHHHHHHHHHHHH
Confidence 45788889999999999999999987666433111 1223445667877776664 344444443434444443
No 324
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=53.47 E-value=58 Score=31.02 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
..++.+|+...+|-.|.+++..|+.+|.+.++++ ..++.|.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4456666555578888898889999999855555 346788888888888543
No 325
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.35 E-value=1.2e+02 Score=27.16 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=41.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|--|.++|..-...|.+++++.-.... ......+. .|.++..+.. +..+.....+..+++.+
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~--D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQG--DVGSAEAVEALVDFVAA 77 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEc--CCCCHHHHHHHHHHHHH
Confidence 56889999999999999888889887666432111 11122233 4666666654 33444333333444433
No 326
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.35 E-value=1e+02 Score=28.50 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=43.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|--|.++|..-...|.+++++...... ....+.++..|.++..+.. +..+.++..+...+..++
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMC--DVRHREEVTHLADEAFRL 80 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC--CCCCHHHHHHHHHHHHHH
Confidence 46788889999999999989999987665322111 1112344556777766654 344444444444444443
No 327
>PRK06198 short chain dehydrogenase; Provisional
Probab=53.34 E-value=1.3e+02 Score=27.12 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=43.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|..++......|.+.++++...... .....++..|.++..+.. +..+.+...+..+.+.+
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA--DLSDVEDCRRVVAAADE 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 567888889999999999999999844445443221 122345567888766654 33344343333444433
No 328
>PRK06194 hypothetical protein; Provisional
Probab=53.30 E-value=1.2e+02 Score=27.92 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=43.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+.. +..+.++..+...+..+
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT--DVSDAAQVEALADAALE 79 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 46888889999999999888899987766432111 1223334455778877765 34444444333444433
No 329
>PRK08862 short chain dehydrogenase; Provisional
Probab=53.19 E-value=85 Score=28.08 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=34.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..++.-|.++|......|.+++++-...... ...+.++..|.+++.+..
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~ 61 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQL 61 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEc
Confidence 456777778889999999999999877653322111 123345566777665543
No 330
>PRK08017 oxidoreductase; Provisional
Probab=53.02 E-value=1.7e+02 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=36.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
..+|+..+|.-|.+++......|.+++++.. +..+.+.++..|.+.+.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r---~~~~~~~~~~~~~~~~~~D 53 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACR---KPDDVARMNSLGFTGILLD 53 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHhHHHHhCCCeEEEee
Confidence 4578888899999999988889998766533 2355556666787776654
No 331
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=52.93 E-value=2.2e+02 Score=27.43 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=34.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
++|..-+.||.|.++|...+..|++++++.+...... +..+..|.+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~--~~A~~~G~~ 63 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW--KKAEADGFE 63 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhH--HHHHHCCCe
Confidence 5788889999999999999999999888766533222 234456764
No 332
>PRK07035 short chain dehydrogenase; Provisional
Probab=52.84 E-value=1.1e+02 Score=27.47 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=41.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.. +..+.....+..++..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALAC--HIGEMEQIDALFAHIRE 81 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc--CCCCHHHHHHHHHHHHH
Confidence 56888889999999999999999987776432111 1122334445666665544 33343333333344433
No 333
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=52.79 E-value=24 Score=32.41 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=27.9
Q ss_pred HHHHHhCCCcCEEEEccCCChhHHHHHHHHH-HhCCCcEEEEEcCCC
Q psy14801 174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIK-EKCPSCKLVGADPFG 219 (404)
Q Consensus 174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~-~~~~~~~vi~V~p~~ 219 (404)
.|+..++-+|+..|+|+|+|+ .++..++. ...|.=+|+-++-..
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGS--G~lt~~l~r~v~p~G~v~t~E~~~ 75 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGS--GSLTHALARAVGPTGHVYTYEFRE 75 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TT--SHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHcCCCCCCEEEEecCCc--HHHHHHHHHHhCCCeEEEccccCH
Confidence 466667767999999999999 66666665 345666888877543
No 334
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=52.69 E-value=93 Score=29.12 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCCEE-EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 73 PGYTI-VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 73 ~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
++.+| |...+|..|.+++..|+.+|.++++.. .++.|.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~---~~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVAST---GRPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHhcCCCEE
Confidence 45555 445569999999999999999866553 34577888889998543
No 335
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=52.60 E-value=86 Score=32.37 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=32.0
Q ss_pred CEEEecCCChHH-HH--HHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEE
Q psy14801 75 YTIVEPSSGNTG-IG--LAMVAAIKGYKMVVVMPMKMSKE----KVYTMKALGAKI 123 (404)
Q Consensus 75 ~~vv~~ssGN~g-~a--~A~~a~~~G~~~~iv~p~~~~~~----k~~~l~~~Ga~v 123 (404)
..+|.++.||.| -+ +|......|+++.|++|...+.. ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 467888888554 44 44455556999999998744332 245567777654
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=52.59 E-value=97 Score=29.15 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
..+.++.+|+....|..|.+++..++.+|++++++.+ +..+.+.++.+|++.++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 4556666665556777999999999999998666543 45667777788876543
No 337
>PLN02527 aspartate carbamoyltransferase
Probab=52.54 E-value=1.5e+02 Score=28.14 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=38.0
Q ss_pred hCCCCCCCEEEecCCC---hHHHHHHHHHHHc-CCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q psy14801 68 AGVLKPGYTIVEPSSG---NTGIGLAMVAAIK-GYKMVVVMPMK--MSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssG---N~g~a~A~~a~~~-G~~~~iv~p~~--~~~~k~~~l~~~Ga~v~~v~ 127 (404)
.|.+ .|.+|+..+.+ |.+.+++.+++++ |+.++++.|+. .+..-.+.++..|.++..+.
T Consensus 146 ~g~l-~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 146 IGRL-DGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred hCCc-CCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 3543 34566666655 4788888887776 88888888875 34444555556677766553
No 338
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=52.38 E-value=92 Score=29.71 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 70 VLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 70 ~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
...++++|+...+|..|.+++..|+.+|.+.++++. .+..|...++.+|++.
T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~ 223 (350)
T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADV 223 (350)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcE
Confidence 334566776667899999999999999996555543 3467777888888753
No 339
>PRK08278 short chain dehydrogenase; Provisional
Probab=52.04 E-value=1.5e+02 Score=27.27 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=36.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--------EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--------~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|--|.++|......|.+++++.....+. .-.+.++..|.+++.+..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 467888888999999999999999988876543211 112334556766666554
No 340
>PRK12744 short chain dehydrogenase; Provisional
Probab=52.00 E-value=1.1e+02 Score=27.64 Aligned_cols=71 Identities=24% Similarity=0.173 Sum_probs=44.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-CCH----HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSK----EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~----~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|..-...|.+++++.... ... ...+.++..|.++..+.. +..+.+...+...+..+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA--DLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec--CcCCHHHHHHHHHHHHH
Confidence 567888899999999998888999966664321 111 223345556777776654 34444444444444443
No 341
>PRK08265 short chain dehydrogenase; Provisional
Probab=51.89 E-value=1.5e+02 Score=26.93 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=42.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEK-VYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k-~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|--|.++|......|.+++++-. + ..+ .+..+..+.++..+.. +..+.+...+..++..++
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~--~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDI-D--ADNGAAVAASLGERARFIAT--DITDDAAIERAVATVVAR 77 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC-C--HHHHHHHHHHhCCeeEEEEe--cCCCHHHHHHHHHHHHHH
Confidence 5678888899999999999999998776632 2 222 2233445766666654 334443433334444333
No 342
>PRK06720 hypothetical protein; Provisional
Probab=51.84 E-value=1.5e+02 Score=25.25 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=32.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEK-VYTMKALGAKIIRTQ 127 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k-~~~l~~~Ga~v~~v~ 127 (404)
..+|+..++--|.++|......|.++++.-.......+ .+.+...|.++..+.
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~ 71 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVS 71 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45677777788899998888889887666432211111 233445566655444
No 343
>PRK08303 short chain dehydrogenase; Provisional
Probab=51.79 E-value=1.3e+02 Score=28.48 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=44.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC---------C--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM---------S--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH 143 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---------~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~ 143 (404)
..+|+..++--|.++|..-...|.+++++-.... . ....+.++..|.+++.+.. +..+.++..+.++
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--Dv~~~~~v~~~~~ 87 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQV--DHLVPEQVRALVE 87 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHH
Confidence 4577888888999999988889998777643211 0 1223445666777666554 3334444444445
Q ss_pred HHHHhC
Q psy14801 144 RIASQM 149 (404)
Q Consensus 144 ~l~~~~ 149 (404)
+..+..
T Consensus 88 ~~~~~~ 93 (305)
T PRK08303 88 RIDREQ 93 (305)
T ss_pred HHHHHc
Confidence 554443
No 344
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=51.40 E-value=83 Score=30.40 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=40.2
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
....++++.+|+..++|..|.+++.+|+.+|.+.++.+. .+..|.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVD--INKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCC
Confidence 345566777776667899999999999999987555543 256777778888874
No 345
>PRK06172 short chain dehydrogenase; Provisional
Probab=51.36 E-value=1.1e+02 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=36.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|......|.+++++.-.... ....+.++..|.++..+..
T Consensus 9 ~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 9 VALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 56788889999999999888999987776432211 1223445666777766654
No 346
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.31 E-value=1.4e+02 Score=26.53 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEec
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 105 (404)
..+|+.++|..|.+++......|.+++++..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5688999999999999998899999666643
No 347
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=51.28 E-value=1.4e+02 Score=27.15 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=34.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMK-ALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~-~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|......|.+++++- . +..+.+.+. .+|.++..+..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r--~~~~~~~l~~~~~~~~~~~~~ 58 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLD-K--SAAGLQELEAAHGDAVVGVEG 58 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe-C--CHHHHHHHHhhcCCceEEEEe
Confidence 567888889999999999999999877653 2 233333343 34556655543
No 348
>PRK06181 short chain dehydrogenase; Provisional
Probab=51.24 E-value=1e+02 Score=27.92 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=43.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.+++......|.+++++...... ....+.+...|.++..+.. +..+.+...+..++..+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPT--DVSDAEACERLIEAAVA 74 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 45788889999999999888999987777543211 1123334556777766654 33344443333444433
No 349
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=51.23 E-value=32 Score=31.47 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
...+.++++.+.-.++..|+..|.|. ..+...+....|+.+++++++...
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~--G~~~~~la~~~~~~~v~gvD~s~~ 66 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGP--GNSTELLVERWPAARITGIDSSPA 66 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccC--CHHHHHHHHHCCCCEEEEEECCHH
Confidence 44667788777645566788888777 445556666678889999998754
No 350
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=51.18 E-value=1e+02 Score=29.79 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=37.5
Q ss_pred CCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHH----HHHHHcCCEEEEeC
Q psy14801 73 PGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKMS--KEKV----YTMKALGAKIIRTQ 127 (404)
Q Consensus 73 ~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~----~~l~~~Ga~v~~v~ 127 (404)
.|.+|...+.+ |.+.|+..+++++|++++++.|+... .... +..+..|+.+..+.
T Consensus 155 ~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 155 SEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45677666665 77889999999999999999888532 2122 12345688877653
No 351
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.12 E-value=59 Score=30.95 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 72 KPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 72 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+++.+|+...+|..|.+++..|+.+|.+.+++. ..+..|....+.+|++-+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 455666555578899999999999998644555 346677788888887543
No 352
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.06 E-value=1.1e+02 Score=28.68 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=41.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|--|.++|......|.+++++...... ....+.+...|.++..+.. +..+.+...+..+++.+
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~--Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPC--DLSDLDAVDALVADVEK 113 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 46788889999999999888899988776543211 1112333445666665554 23333333333343333
No 353
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=50.99 E-value=1.3e+02 Score=24.64 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=34.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHH----HHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYK-MVVVMPMKMSKEK----VYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~~~~~k----~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|..|.+++......|.. ++++.....+... .+.++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 4578888889999999888888875 4444332221111 3455566777776654
No 354
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=50.90 E-value=3e+02 Score=28.40 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=31.7
Q ss_pred EEEecCCChHHHHHHHHH------HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 76 TIVEPSSGNTGIGLAMVA------AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a------~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.|+...++..|..++..+ -..|=++.+..|.-..-...-.+..+|++++.++.
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~ 215 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKA 215 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeec
Confidence 677777778887776654 12244444444443333333345557888888765
No 355
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=50.88 E-value=1.4e+02 Score=29.45 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=68.8
Q ss_pred CChhhHHHHHHHH----HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 51 GSLKDRAAWRMIE----DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 51 GS~K~R~a~~~l~----~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
|.+..-.|.+.+. .++..|..-.|++|-.-+.||-|..+|..++.+|++++.+=|..... +..
T Consensus 89 g~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~---- 155 (378)
T PRK15438 89 GCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDE---- 155 (378)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccc----
Confidence 5555555554443 33333444457899999999999999999999999999885431100 110
Q ss_pred CCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHH
Q psy14801 127 QNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197 (404)
Q Consensus 127 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~ 197 (404)
..+... +++.++. ..+.+ .+. ++.+..+-+.-+..+.+.++ +++.++|-++=|..+=
T Consensus 156 ---~~~~~L-------~ell~~s-DiI~lh~PL-t~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVD 213 (378)
T PRK15438 156 ---GDFRSL-------DELVQEA-DILTFHTPL-FKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVD 213 (378)
T ss_pred ---cccCCH-------HHHHhhC-CEEEEeCCC-CCCcccccccccCHHHHhcC--CCCcEEEECCCchhcC
Confidence 012222 2333333 33333 232 23222221233444666666 4789999999998653
No 356
>PRK05717 oxidoreductase; Validated
Probab=50.86 E-value=1.3e+02 Score=27.06 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=42.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|..-...|.+++++-.. .....+..+..+.+++.+.. +..+.+...+..+++.++
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLADLD--RERGSKVAKALGENAWFIAM--DVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHHcCCceEEEEc--cCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999987776322 11122233445666666554 333443333333444443
No 357
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.83 E-value=1.2e+02 Score=27.03 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=44.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
..+|+..+|.-|.+++......|.+++++.....+ ....+.++..+.++..+.. +..+.+...+..++..
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV--DVRDRAALKAAVAAGV 78 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHH
Confidence 46788889999999999888899987776543211 2233445666777776665 3444444433334443
No 358
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.71 E-value=1.2e+02 Score=27.26 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=41.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|..-...|.+++++-..... ....+.++..|.++..+.. +..+.+...+..+++.+
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCC--DVSQHQQVTSMLDQVTA 82 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 46788888899999999888999987665322111 1112334455666666554 33444343333344433
No 359
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.63 E-value=1.2e+02 Score=27.15 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=35.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 55788888999999999888899987665432111 1223334556777766654
No 360
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=50.55 E-value=79 Score=30.87 Aligned_cols=54 Identities=31% Similarity=0.333 Sum_probs=41.0
Q ss_pred CCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
..++++++|+... +|..|.+++..|+.+|.+.++.. .+..+.+.++.+|++.++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456667775555 69999999999999999976553 366788888899986543
No 361
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=50.55 E-value=67 Score=32.70 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC--------------CCH----HHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK--------------MSK----EKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~--------------~~~----~k~~~l~~~Ga~v~~ 125 (404)
.+..|+.-++|-.|.+.|...++.|+++++|-... .+. ...+.++.+|.+++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999999999999999984321 111 234667888988764
No 362
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=50.43 E-value=1.6e+02 Score=26.08 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=44.2
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+.. +..+.++..+..++..+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF--DVADRVACRTLLEADIAE 73 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc--cCCCHHHHHHHHHHHHHH
Confidence 678888999999999999999997766433221 1223445566778877765 344544443434443333
No 363
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=50.38 E-value=1.2e+02 Score=26.97 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=44.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.+++......|.+++++....... .....++..|.++..+.. +..+.+...+..+++.+
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~d~~~i~~~~~~~~~ 75 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA--DISDENQVVAMFTAIDQ 75 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 458888899999999998889999887755443221 223345566777766654 34444444333444433
No 364
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=50.29 E-value=77 Score=30.65 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCCEEEecCC---ChHHHHHHHH-HHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q psy14801 73 PGYTIVEPSS---GNTGIGLAMV-AAIKGYKMVVVMPMKM--SKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 73 ~~~~vv~~ss---GN~g~a~A~~-a~~~G~~~~iv~p~~~--~~~k~~~l~~~Ga~v~~v~ 127 (404)
.|.+|+..+. +|.+.+++.. ++.+|++++++-|++. +..-.+.++..|..+..+.
T Consensus 158 ~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 158 DGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 4567777666 4778888864 5566888888888753 4444556666787777654
No 365
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.17 E-value=1.4e+02 Score=26.78 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|..|.++|..-...|.+++++.....+. .....++..+.++..+.. +..+.+...+...++.+
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM--DVTDEEAINAGIDYAVE 77 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc--CCCCHHHHHHHHHHHHH
Confidence 467888899999999998888899887775432222 222345556777766654 34444444333444433
No 366
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=50.12 E-value=84 Score=28.22 Aligned_cols=51 Identities=27% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 56 RAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 56 R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
||..+.+..+.+. +..-.|.+|+..+.||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666666665443 33335689999999999999999999999888887653
No 367
>PRK08354 putative aminotransferase; Provisional
Probab=50.08 E-value=1.8e+02 Score=27.35 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=30.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.|+..+++..+..+....-..|= .|++|.-+-..-...++.+|++++.++.
T Consensus 56 ~I~vt~G~~~al~~~~~~~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~~~~ 106 (311)
T PRK08354 56 PIVITAGITEALYLIGILALRDR--KVIIPRHTYGEYERVARFFAARIIKGPN 106 (311)
T ss_pred CEEECCCHHHHHHHHHHhhCCCC--eEEEeCCCcHHHHHHHHHcCCEEeecCC
Confidence 46666666777665543323453 3444543334445677889999987753
No 368
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.05 E-value=1.4e+02 Score=26.90 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=41.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++--.... ......++..+.++..++. +..+.+...+...++.+
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF--NVTHKQEVEAAIEHIEK 82 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEec--CCCCHHHHHHHHHHHHH
Confidence 56888889999999999988999887765322111 1112334445667766654 33343333333444433
No 369
>PRK07904 short chain dehydrogenase; Provisional
Probab=50.01 E-value=2e+02 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=34.1
Q ss_pred CEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIK-GYKMVVVMPMKMS--KEKVYTMKALGA-KIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~--~~k~~~l~~~Ga-~v~~v~~ 128 (404)
..+|+..+|-.|.++|...... |.+++++.....+ ....+.++..|. ++..+..
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~ 67 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDF 67 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEe
Confidence 4678888888999999877676 5888877543322 122344555554 5555544
No 370
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=49.91 E-value=1.8e+02 Score=25.64 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=65.3
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC
Q psy14801 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157 (404)
Q Consensus 78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e 157 (404)
|+.++-+.-.++....+++. ++.|=...-.+.+..+.....||+.+..|+ ++ .+..+.|+ +. +..++..
T Consensus 39 iT~~t~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~a~~a~~aGA~FivSP~---~~--~~v~~~~~----~~-~i~~iPG 107 (196)
T PF01081_consen 39 ITLRTPNALEAIEALRKEFP-DLLVGAGTVLTAEQAEAAIAAGAQFIVSPG---FD--PEVIEYAR----EY-GIPYIPG 107 (196)
T ss_dssp EETTSTTHHHHHHHHHHHHT-TSEEEEES--SHHHHHHHHHHT-SEEEESS-------HHHHHHHH----HH-TSEEEEE
T ss_pred EecCCccHHHHHHHHHHHCC-CCeeEEEeccCHHHHHHHHHcCCCEEECCC---CC--HHHHHHHH----Hc-CCcccCC
Confidence 56666677777776666664 444444445677888888889999999986 32 23333333 33 3344332
Q ss_pred CCCCCChhhHHhhHHHHHHHHhCCCcCE-EEEccCC-ChhHHHHHHHHHHhCCCcEEEE
Q psy14801 158 FRNPNNPLSHYETTAEEILRDTGGKVDM-IVLGCGT-GGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 158 ~~np~~si~g~~~~a~ei~~q~~~~~~~-vvv~~gs-G~~~~Gi~la~~~~~~~~~vi~ 214 (404)
-..| -||.+..+...+. -+.|++. || .....+++.-.|+.+++.
T Consensus 108 ~~Tp-----------tEi~~A~~~G~~~vK~FPA~~~GG--~~~ik~l~~p~p~~~~~p 153 (196)
T PF01081_consen 108 VMTP-----------TEIMQALEAGADIVKLFPAGALGG--PSYIKALRGPFPDLPFMP 153 (196)
T ss_dssp ESSH-----------HHHHHHHHTT-SEEEETTTTTTTH--HHHHHHHHTTTTT-EEEE
T ss_pred cCCH-----------HHHHHHHHCCCCEEEEecchhcCc--HHHHHHHhccCCCCeEEE
Confidence 3333 2555544433343 3677775 77 677778888888888864
No 371
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=49.83 E-value=1.2e+02 Score=28.76 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
.....++++++|+...+|-.|.+++..++.+|++.++... .+..+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCc
Confidence 3456667777776656788999999999999988655543 356778888888875
No 372
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=49.78 E-value=2.2e+02 Score=26.50 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..|+.-|.++|.--++.|.+++++-.....- ...+.-+.+|.+|...+. |+.+.++..+...++..+
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~--DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA--DLSDPEALERLEDELKER 81 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC--cCCChhHHHHHHHHHHhc
Confidence 568899999999999999999999999997543211 122222446778877775 455555555555555554
No 373
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=49.76 E-value=1.6e+02 Score=28.05 Aligned_cols=60 Identities=30% Similarity=0.368 Sum_probs=39.2
Q ss_pred HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHH-HHHcCCEEEEeC
Q psy14801 67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYT-MKALGAKIIRTQ 127 (404)
Q Consensus 67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~-l~~~Ga~v~~v~ 127 (404)
+.|.++ |.+|+..+ .+|...+++..++++|+++.++.|+.-. ....+. .+..|.++....
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345543 34554444 3688899999999999999999988532 222332 466788876553
No 374
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=49.74 E-value=1.1e+02 Score=22.90 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=33.2
Q ss_pred EEecCCChHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHH-HHcCCEEEE
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKG---YKMVVVMPMKMSKEKVYTM-KALGAKIIR 125 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G---~~~~iv~p~~~~~~k~~~l-~~~Ga~v~~ 125 (404)
|..-++||.|.+++..-...| .++.++... ++++.+.+ +.+|.++..
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEES
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhcccccc
Confidence 444489999999999999999 777765433 34554444 777866664
No 375
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=49.42 E-value=67 Score=32.50 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC---------CC---------HHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK---------MS---------KEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---------~~---------~~k~~~l~~~Ga~v~~ 125 (404)
.++.|+.-++|-.|.+.|..+++.|++++++-... .+ ....++++.+|.+++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 35789999999999999999999999988884321 11 1345678889988764
No 376
>PTZ00377 alanine aminotransferase; Provisional
Probab=49.26 E-value=1.7e+02 Score=29.65 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=46.7
Q ss_pred CEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--CCC-ChhhHHHHHHHHHHh-
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAI--KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK--SYD-HPEGMIAGAHRIASQ- 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~--~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~--~~~-~~~~~~~~a~~l~~~- 148 (404)
+.|+..+++..+..++..+-. .|=. |++|.-+-..-...++.+|++++.++-+. ++. +.++..+...+..++
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~--Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 216 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDG--VMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG 216 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCE--EEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcC
Confidence 457766666777777665432 3433 44444333344567788999999987532 122 222222221111111
Q ss_pred -CCCcEeecCCCCCCChh
Q psy14801 149 -MKNAVVLDQFRNPNNPL 165 (404)
Q Consensus 149 -~~~~~~~~e~~np~~si 165 (404)
....+++....||+|.+
T Consensus 217 ~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 217 ITPRALVVINPGNPTGQV 234 (481)
T ss_pred CCeeEEEEECCCCCCCcC
Confidence 12234555558998854
No 377
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=49.18 E-value=2.8e+02 Score=27.49 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCC--EEEecCCChHHHH--HHHHHHHcCCeEEEEe
Q psy14801 46 FMNPTGSLKDRAAWRMIEDAETAGVLKPGY--TIVEPSSGNTGIG--LAMVAAIKGYKMVVVM 104 (404)
Q Consensus 46 ~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~--~vv~~ssGN~g~a--~A~~a~~~G~~~~iv~ 104 (404)
+.+|.|..+ .....+...+.+|.+..|. .+|+..++..|.| +|.+. ..|.+.+++-
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 445666443 3456677777777664432 3566666666666 45555 6788766654
No 378
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=48.93 E-value=50 Score=33.01 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=35.5
Q ss_pred CCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 72 KPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 72 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
..|++|+..+.|+-|.++|..++.+|.+++++ . ..+.+.......|.++
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~-d--~dp~ra~~A~~~G~~v 258 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVT-E--VDPICALQAAMDGFRV 258 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-c--CCchhhHHHHhcCCEe
Confidence 46789999999999999999999999986554 2 2233444444457664
No 379
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=48.87 E-value=1.3e+02 Score=28.34 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=39.2
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
.+.++++.+|+.-.+|..|.+++..|+.+|++++... .+..+.+.++.+|++-+.
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~---~s~~~~~~~~~~g~~~~~ 214 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVD---IKEEKLELAKELGADEVL 214 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEEE
Confidence 3556677776666678889999999999999855442 345667777888875443
No 380
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.86 E-value=2e+02 Score=25.74 Aligned_cols=112 Identities=10% Similarity=0.139 Sum_probs=63.4
Q ss_pred ecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCC
Q psy14801 79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158 (404)
Q Consensus 79 ~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~ 158 (404)
+.++-+.-.++....+.+. ++.|-..........++....||+.+.+|+ ++. +.++.|.+ . +..++...
T Consensus 47 tl~~~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~FivsP~---~~~--~vi~~a~~----~-~i~~iPG~ 115 (212)
T PRK05718 47 TLRTPAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQFIVSPG---LTP--PLLKAAQE----G-PIPLIPGV 115 (212)
T ss_pred ecCCccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCCEEECCC---CCH--HHHHHHHH----c-CCCEeCCC
Confidence 3334455566666666665 566666666677778888888999998886 321 33433432 2 23333333
Q ss_pred CCCCChhhHHhhHHHHHHHHhCCCcCE-EEEccCC-ChhHHHHHHHHHHhCCCcEEEE
Q psy14801 159 RNPNNPLSHYETTAEEILRDTGGKVDM-IVLGCGT-GGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 159 ~np~~si~g~~~~a~ei~~q~~~~~~~-vvv~~gs-G~~~~Gi~la~~~~~~~~~vi~ 214 (404)
.+|+ |+.+-.+...+. -+.|++. |+ .....+++.-.|+.++..
T Consensus 116 ~Tpt-----------Ei~~a~~~Ga~~vKlFPa~~~gg--~~~lk~l~~p~p~~~~~p 160 (212)
T PRK05718 116 STPS-----------ELMLGMELGLRTFKFFPAEASGG--VKMLKALAGPFPDVRFCP 160 (212)
T ss_pred CCHH-----------HHHHHHHCCCCEEEEccchhccC--HHHHHHHhccCCCCeEEE
Confidence 3332 333322222232 3567663 45 556677777788877763
No 381
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.68 E-value=1.3e+02 Score=26.54 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=44.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHH--HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKE--KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~--k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
+.+|+..+|..|.+++......|.+++++........ ..+.+...+.++..+.. +..+.+...+...+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA--DVTDKAALEAAVAAAVE 80 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC--CcCCHHHHHHHHHHHHH
Confidence 5688889999999999999999999877655432221 22334456777766654 34444444333344433
No 382
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=48.63 E-value=1.4e+02 Score=26.98 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=43.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|--|.++|..-...|.+++++...... +.....++..+.++..+.. +..+.+...+...++.+
T Consensus 14 ~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~--Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 14 TALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA--DVADEADIERLAEETLE 85 (259)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 56788889999999999888899987665432111 1112234556777777765 44454444343444444
No 383
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.60 E-value=1.5e+02 Score=26.46 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=41.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
..+|+..+|.-|.++|......|.+++++. .... ......++..+.++..+.. +..+.+...+..++.
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~G~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEAGATVAFND-GLAAEARELAAALEAAGGRAHAIAA--DLADPASVQRFFDAA 78 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCEEEEEe-CCHHHHHHHHHHHHhcCCcEEEEEc--cCCCHHHHHHHHHHH
Confidence 467888899999999999889999876663 2211 1122344556777766664 344443333333333
No 384
>PRK06348 aspartate aminotransferase; Provisional
Probab=48.53 E-value=2.7e+02 Score=27.10 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=46.8
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CCCC-ChhhHHHHHHHHHHhCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQND--KSYD-HPEGMIAGAHRIASQMK 150 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~--~~~~-~~~~~~~~a~~l~~~~~ 150 (404)
+.|+..+++.+|..++..+- ..|= .|++|.-+-..-...++..|++++.++.. .++. +. +..++..++..
T Consensus 90 ~~i~it~G~~~al~~~~~~~~~~gd--~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~----~~l~~~~~~~~ 163 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSILDPGD--EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINV----KKLEALITSKT 163 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhcCCCC--EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCH----HHHHHhhCcCc
Confidence 45777777788876665543 2232 45555533334455677889999988742 1221 22 22222222233
Q ss_pred CcEeecCCCCCCChh
Q psy14801 151 NAVVLDQFRNPNNPL 165 (404)
Q Consensus 151 ~~~~~~e~~np~~si 165 (404)
..+++....||+|.+
T Consensus 164 ~~v~l~~p~NPtG~~ 178 (384)
T PRK06348 164 KAIILNSPNNPTGAV 178 (384)
T ss_pred cEEEEeCCCCCCCcC
Confidence 456666668888754
No 385
>PRK07791 short chain dehydrogenase; Provisional
Probab=48.52 E-value=1.6e+02 Score=27.39 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
..+|+..++--|.++|......|.+++++.
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 567888888999999998888999877763
No 386
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.17 E-value=34 Score=36.34 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC---------CC---------HHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK---------MS---------KEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---------~~---------~~k~~~l~~~Ga~v~~ 125 (404)
.+++|+.-++|-.|++.|.+.++.|++++||=... .+ ....+.++.+|.++..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 36789999999999999999999999999884321 11 1235667788887753
No 387
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.97 E-value=1.4e+02 Score=27.87 Aligned_cols=53 Identities=32% Similarity=0.452 Sum_probs=38.6
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+..+++.+|+...+|..|.+++..|+..|.++++..+ +..+++.++.+|++.+
T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 208 (336)
T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHV 208 (336)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 4566777776667888999999999999998655532 4466667777777544
No 388
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=47.87 E-value=2.3e+02 Score=27.02 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=43.8
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHh-CCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQ-MKN 151 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~-~~~ 151 (404)
..++..++|..+..++..+- ..|-++++..+...+..-....+.+|++++.++.+.++. +.+. .++..++ ...
T Consensus 51 ~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----l~~~i~~~~~~ 126 (356)
T cd06451 51 LTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEE----IAEALEQHDIK 126 (356)
T ss_pred CEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHH----HHHHHhccCCC
Confidence 44666666666655555332 234333332222222222456788999999998643221 2222 2222222 334
Q ss_pred cEeecCCCCCCChhh
Q psy14801 152 AVVLDQFRNPNNPLS 166 (404)
Q Consensus 152 ~~~~~e~~np~~si~ 166 (404)
.+++..-.||.|.+.
T Consensus 127 ~v~i~~~~~~~G~~~ 141 (356)
T cd06451 127 AVTLTHNETSTGVLN 141 (356)
T ss_pred EEEEeccCCCccccc
Confidence 566544467776544
No 389
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=47.81 E-value=1.1e+02 Score=28.84 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=39.9
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+...++++++|+...+|-.|.+++..|+. +|.+.+... .++.+.+.++.+|++.+.
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v~ 212 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLTI 212 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEEe
Confidence 44556777777665678888888888887 498765553 345677888889986543
No 390
>PLN02342 ornithine carbamoyltransferase
Probab=47.78 E-value=1.7e+02 Score=28.44 Aligned_cols=59 Identities=27% Similarity=0.323 Sum_probs=41.4
Q ss_pred HhCCCCCCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEe
Q psy14801 67 TAGVLKPGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVYTMKALGA-KIIRT 126 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~l~~~Ga-~v~~v 126 (404)
+.|.+ .|.+|+..+.+ |.+.+++.+++++|++++++-|+.. +..-++.++..|. ++..+
T Consensus 188 ~~G~l-~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 188 HIGRL-EGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred HhCCc-CCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 34654 45677666655 8889999999999999999999853 3444555666674 55544
No 391
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.56 E-value=1.5e+02 Score=26.77 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=42.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+.. +..+.+...+..+.+.+
T Consensus 13 ~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRC--DITSEQELSALADFALS 84 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc--cCCCHHHHHHHHHHHHH
Confidence 567888899999999998889999887765432111 112334556777666554 34444333333344333
No 392
>PRK07890 short chain dehydrogenase; Provisional
Probab=47.48 E-value=1.4e+02 Score=26.90 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=35.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|--|.++|......|.+++++-..... +.-...+...|.++..+..
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 56888889999999999999999987776432111 1112233445666666554
No 393
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=47.42 E-value=1.4e+02 Score=26.86 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTM-KALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l-~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
.+|+..+|..|.++|......|.+++++.. .+.+.+.+ ...+.++..+.. +..+.+...+..+++.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGR---RQERLQELKDELGDNLYIAQL--DVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHhccceEEEEe--cCCCHHHHHHHHHHHHH
Confidence 478888999999999999999998776532 23333333 334666666654 34444443333444443
No 394
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=47.36 E-value=2.1e+02 Score=25.59 Aligned_cols=125 Identities=12% Similarity=0.156 Sum_probs=76.0
Q ss_pred HHHHHHHhCCCCCCCEE-EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHH
Q psy14801 61 MIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139 (404)
Q Consensus 61 ~l~~a~~~g~~~~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~ 139 (404)
+.....+.|. +.| |+..|=....++...++.++ +++|=...-.+.+..++....||+.++.|+ ++. +..
T Consensus 30 ~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~---~~~--ev~ 99 (211)
T COG0800 30 LAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPG---LNP--EVA 99 (211)
T ss_pred HHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCC---CCH--HHH
Confidence 3344445554 344 67778888899999999999 776655556678889999999999999987 321 222
Q ss_pred HHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCcC-EEEEcc-CCChhHHHHHHHHHHhCCCcEEE
Q psy14801 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVD-MIVLGC-GTGGTASGIGRKIKEKCPSCKLV 213 (404)
Q Consensus 140 ~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~-~vvv~~-gsG~~~~Gi~la~~~~~~~~~vi 213 (404)
+ .+... +..++....+| -|++..++...+ .=+.|+ ..|+ .++-.+++.-.+++++.
T Consensus 100 ~----~a~~~-~ip~~PG~~Tp-----------tEi~~Ale~G~~~lK~FPa~~~Gg--~~~~ka~~gP~~~v~~~ 157 (211)
T COG0800 100 K----AANRY-GIPYIPGVATP-----------TEIMAALELGASALKFFPAEVVGG--PAMLKALAGPFPQVRFC 157 (211)
T ss_pred H----HHHhC-CCcccCCCCCH-----------HHHHHHHHcChhheeecCccccCc--HHHHHHHcCCCCCCeEe
Confidence 2 22222 34444433444 255544442211 123443 4567 67777777777776654
No 395
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=47.36 E-value=1.4e+02 Score=28.28 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=38.7
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
....+.++++|+.-.+|..|.+++..|+.+|+++++.. .+..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~---~s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVD---IDDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEC---CCHHHHHHHHHhCCC
Confidence 34556677776655678889999999999999976653 346677777888864
No 396
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.33 E-value=1.4e+02 Score=26.94 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=42.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|.++|......|.+++++...... ..-...++..|.++..+.. +..+.....+..++..+
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF--DIADEEAVAAAFARIDA 84 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc--cCCCHHHHHHHHHHHHH
Confidence 56788888999999999888899987776543211 1112334556766666554 33444333333444433
No 397
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=47.18 E-value=2.7e+02 Score=26.74 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=42.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 154 (404)
..|+..+++..+..++..+-..+-.-.|++|.-.-..-...++.+|++++.++. .+ ++.......++
T Consensus 81 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~---~~----------~l~~~~~~~v~ 147 (357)
T TIGR03539 81 TAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD---PT----------ELDPVGPDLIW 147 (357)
T ss_pred CeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCC---hh----------hcCccCccEEE
Confidence 467766666777665543221222234555653334445567889999987742 11 11112224566
Q ss_pred ecCCCCCCChh
Q psy14801 155 LDQFRNPNNPL 165 (404)
Q Consensus 155 ~~e~~np~~si 165 (404)
+....||.|..
T Consensus 148 ~~~p~NPtG~~ 158 (357)
T TIGR03539 148 LNSPGNPTGRV 158 (357)
T ss_pred EeCCCCCcCcc
Confidence 66678887743
No 398
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=47.17 E-value=3.1e+02 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC--------------CC----HHHHHHHHHcCCEEEE
Q psy14801 74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK--------------MS----KEKVYTMKALGAKIIR 125 (404)
Q Consensus 74 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~--------------~~----~~k~~~l~~~Ga~v~~ 125 (404)
+..|+.-++|-.|.+.|...++.|++++||-... .+ ....+.++.+|.+++.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~ 202 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRM 202 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEe
Confidence 4679999999999999999999999999986431 11 1223467778888764
No 399
>PRK08068 transaminase; Reviewed
Probab=47.11 E-value=2.8e+02 Score=26.96 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=53.2
Q ss_pred CCChhhHHHHHHHHHHHHhCC-CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 50 TGSLKDRAAWRMIEDAETAGV-LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 50 tGS~K~R~a~~~l~~a~~~g~-~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
.|.-..|-+..-.... ..|. ..+...|+..+++..+..++..+ ..+-.-.|++|.-+-..-...++.+|++++.++.
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 147 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPETEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMPL 147 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCCccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec
Confidence 4655555443322111 1242 33433466666667776554332 2232234555543223334456789999999886
Q ss_pred CC--CCC-ChhhHHHHHHHHHHhCCCcEeecCCCCCCChh
Q psy14801 129 DK--SYD-HPEGMIAGAHRIASQMKNAVVLDQFRNPNNPL 165 (404)
Q Consensus 129 ~~--~~~-~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si 165 (404)
+. ++. +.++. .+...+....++++.-.||+|.+
T Consensus 148 ~~~~~~~~d~~~l----~~~~~~~~~~v~l~~P~NPTG~~ 183 (389)
T PRK08068 148 IAENNFLPDYTKI----PEEVAEKAKLMYLNYPNNPTGAV 183 (389)
T ss_pred ccccCCCCCHHHH----HHhccccceEEEEECCCCCCCCc
Confidence 32 222 22222 22222222456665337898754
No 400
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=47.10 E-value=1.4e+02 Score=28.41 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+.++.+++....|..|.+++..|+.+|++++++.+ +..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 56667766566889999999999999997655532 34566677778876443
No 401
>PRK13984 putative oxidoreductase; Provisional
Probab=47.03 E-value=69 Score=33.59 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=40.4
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM--------------S----KEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--------------~----~~k~~~l~~~Ga~v~~ 125 (404)
.++.|+.-++|-.|.+.|...++.|++++|+=.... + ....+.++.+|.+++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 456788888999999999999999999999843211 1 2345678889988754
No 402
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=46.75 E-value=1.5e+02 Score=28.61 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=49.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--CCCChhhHHHHHHHHHHhCCCc
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK--SYDHPEGMIAGAHRIASQMKNA 152 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~--~~~~~~~~~~~a~~l~~~~~~~ 152 (404)
..|+..++...+..++..+- .+ -.|++|.-+-..=...++..|++++.++-+. .+.-..+. .+.+.+ ....
T Consensus 72 ~~i~it~Ga~~~l~~~~~~~-~~--~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~---~~~~~~-~~~~ 144 (354)
T PRK06358 72 ENVILGNGATELIFNIVKVT-KP--KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANEIV---LEEIKE-EIDL 144 (354)
T ss_pred hhEEECCCHHHHHHHHHHHh-CC--CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCccHHH---HHhhcc-CCCE
Confidence 34665566677766665542 22 2555665433444556788999999987531 12111111 222222 2233
Q ss_pred EeecCCCCCCChhhHHhhHHHHHHHHhC
Q psy14801 153 VVLDQFRNPNNPLSHYETTAEEILRDTG 180 (404)
Q Consensus 153 ~~~~e~~np~~si~g~~~~a~ei~~q~~ 180 (404)
+++..-.||+|..--.+ --.+|++.+.
T Consensus 145 v~~~~P~NPtG~~~~~~-~~~~l~~~a~ 171 (354)
T PRK06358 145 VFLCNPNNPTGQLISKE-EMKKILDKCE 171 (354)
T ss_pred EEEeCCCCCCCCccCHH-HHHHHHHHHH
Confidence 44433378987543212 2235555554
No 403
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=46.69 E-value=1.5e+02 Score=26.41 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=36.4
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.+++..-...|.+++++....... .....++..+.++..++.
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 457888899999999999889999877765332111 112234555777776665
No 404
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.58 E-value=1.5e+02 Score=27.83 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=38.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|..-...|.+++++-..... ....+.++..|.+++.+..
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 56788888999999999888899987765322211 1224556677888877765
No 405
>PRK07985 oxidoreductase; Provisional
Probab=46.48 E-value=2e+02 Score=26.74 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=44.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC-C-H-HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM-S-K-EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~-~-~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+..+|.-|.++|......|.+++++-.... . . ...+.++..|.+++.+.. +..+.+...+..++..+.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG--DLSDEKFARSLVHEAHKA 125 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc--cCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999877543211 1 1 112234456777766654 344444444444444443
No 406
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=46.27 E-value=1e+02 Score=29.06 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=36.5
Q ss_pred CCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 74 GYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 74 ~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
+..+|. ..+|..|.++...|+.+|.+.++.. .+..|++.++.+|++-+..
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIV---RRKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEE
Confidence 345554 6788999998899999999855543 3467788888899875544
No 407
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=46.23 E-value=1.3e+02 Score=27.43 Aligned_cols=51 Identities=22% Similarity=0.196 Sum_probs=37.8
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcC
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK-MVVVMPMKMSKEKVYTMKALG 120 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~~~~~k~~~l~~~G 120 (404)
..+.++++.+++....|..|.++...|+.+|.+ +++. ..+..+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 356667778876667889999999999999998 4443 33556677777777
No 408
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.19 E-value=2.1e+02 Score=25.55 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=34.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVY-TMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~-~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|.-|.++|..-...|.++++..... ..+.+ ....++.++..+..
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~ 59 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQS--EDAAEALADELGDRAIALQA 59 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHhCCceEEEEc
Confidence 568889999999999998888999887754432 22222 23334555555543
No 409
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=46.09 E-value=1.6e+02 Score=27.59 Aligned_cols=54 Identities=28% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCCCCCCEEEec-CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEP-SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+.+.++.+|+.- .+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 556666776554 479999999999999999876543 345677777888986443
No 410
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=46.04 E-value=1.6e+02 Score=27.92 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=38.4
Q ss_pred hCCCCCC--CEE-EecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEEe
Q psy14801 68 AGVLKPG--YTI-VEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKA-LGAKIIRT 126 (404)
Q Consensus 68 ~g~~~~~--~~v-v~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~-~Ga~v~~v 126 (404)
.+.++++ ++| |...+|..|.++...|+.+|. ++++.. .++.|.+.++. +|++-++.
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~---~s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGIC---GSDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHhcCCcEEEE
Confidence 4445555 566 555569999999999999998 555543 34567777765 89865443
No 411
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.00 E-value=1.7e+02 Score=25.84 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=42.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+..+|.-|..+|......|.++++++...... ...+.+...+.++..+.. +..+.+...+.+.++.+
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA--DVSSEEDVENLVEQIVE 79 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 467888899999999998888899987763433221 112333445667766654 34444443333444443
No 412
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=45.95 E-value=1.6e+02 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=36.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|--|.++|......|.+++++....... ...+.++..|.++..+..
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 567888899999999998888999887654322111 122345566778877765
No 413
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=45.85 E-value=3.4e+02 Score=27.58 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=68.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKAL----GAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN 151 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~----Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~ 151 (404)
+|-.-+.|+.|.++|..-...|++++++ +.++.+.+.+... |..+..+ ++..+. +..+. .+.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~---dr~~~~~~~l~~~~~~~g~~i~~~------~s~~e~---v~~l~--~~d 68 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVY---NRTYEKTEEFVKKAKEGNTRVKGY------HTLEEL---VNSLK--KPR 68 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEE---eCCHHHHHHHHHhhhhcCCcceec------CCHHHH---HhcCC--CCC
Confidence 4666788999999999999999998887 3455665555443 5443322 122111 22211 123
Q ss_pred cEeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801 152 AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG 219 (404)
Q Consensus 152 ~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~ 219 (404)
.+++. ..|...+ +.+..++...+ +++.+|+..|++.--...-++-.....|++++.+-..+
T Consensus 69 ~Iil~--v~~~~~v---~~vi~~l~~~L--~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 69 KVILL--IKAGEAV---DETIDNLLPLL--EKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG 129 (470)
T ss_pred EEEEE--eCChHHH---HHHHHHHHhhC--CCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence 33331 1222122 22323444333 36788999998875555555555556677776654444
No 414
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=45.80 E-value=1.1e+02 Score=29.60 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=39.6
Q ss_pred hCCCCCCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHH----HHHHcCCEEEEeC
Q psy14801 68 AGVLKPGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVY----TMKALGAKIIRTQ 127 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~----~l~~~Ga~v~~v~ 127 (404)
.|.+ .|.+|+..+.+ |.+.+++..++++|++++++.|+.. +....+ ..+..|.++..+.
T Consensus 150 ~g~l-~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 150 FGPL-KGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred hCCC-CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4543 34677666665 8889999999999999999988853 222222 2345688876654
No 415
>PRK06101 short chain dehydrogenase; Provisional
Probab=45.73 E-value=1e+02 Score=27.54 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=34.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
..+|+..+|.-|.++|..-...|.+++++.. ...+.+.+...+.++..+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~~~ 52 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR---NQSVLDELHTQSANIFTLA 52 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHhcCCCeEEE
Confidence 4688999999999999988889999777643 2445555554444444444
No 416
>PLN02494 adenosylhomocysteinase
Probab=45.73 E-value=59 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
+....|++|+..+.|.-|+++|..++.+|.+++++= .++.+.......|.++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e---~dp~r~~eA~~~G~~v 300 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTE---IDPICALQALMEGYQV 300 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCchhhHHHHhcCCee
Confidence 444567899999999999999999999999855542 2333333445567764
No 417
>PRK05993 short chain dehydrogenase; Provisional
Probab=45.61 E-value=2e+02 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=36.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
..+|+..+|.-|.++|......|.+++++.. ...+++.+...|.+++.++
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r---~~~~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCR---KEEDVAALEAEGLEAFQLD 55 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHCCceEEEcc
Confidence 4578888899999999988889998877643 3445555666676665554
No 418
>PRK06701 short chain dehydrogenase; Provisional
Probab=45.50 E-value=2.5e+02 Score=26.11 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=37.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|--|.++|....+.|.+++++...... ......++..|.++..+..
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 56788889999999999888899998776543222 2233445666777766654
No 419
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=45.48 E-value=1.7e+02 Score=27.03 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+..+++.+|+... +|..|.++...|+.+|.+++.+.+ +..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 4455666765544 699999999999999999655533 34666777778885443
No 420
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.38 E-value=1.8e+02 Score=27.23 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=39.0
Q ss_pred HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
....++++.+|+..+.|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 4455667777766667888999999999999984444332 45667777888886
No 421
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.37 E-value=84 Score=31.61 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=40.9
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMK-----MSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~-----~~~~k~~~l~~~Ga~v~~ 125 (404)
.+++|+.-++||.|.-+|..+.++|. +++++.... ......+.++..|.+++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 45789999999999999999999998 788886532 134445667778888764
No 422
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.34 E-value=2.2e+02 Score=25.25 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=67.8
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC
Q psy14801 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157 (404)
Q Consensus 78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e 157 (404)
|+.++-+.-.++....+++. ++.|=...-.+.+..+.....||+.+..|. ++ .+.++. +++. +..++..
T Consensus 35 it~~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~FivSP~---~~--~~vi~~----a~~~-~i~~iPG 103 (201)
T PRK06015 35 ITLRTPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSRFIVSPG---TT--QELLAA----ANDS-DVPLLPG 103 (201)
T ss_pred EeCCCccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCCEEECCC---CC--HHHHHH----HHHc-CCCEeCC
Confidence 55556666667777766664 444433445677788888889999999886 32 233333 3333 3444443
Q ss_pred CCCCCChhhHHhhHHHHHHHHhCCCcCE-EEEccCC-ChhHHHHHHHHHHhCCCcEEEE
Q psy14801 158 FRNPNNPLSHYETTAEEILRDTGGKVDM-IVLGCGT-GGTASGIGRKIKEKCPSCKLVG 214 (404)
Q Consensus 158 ~~np~~si~g~~~~a~ei~~q~~~~~~~-vvv~~gs-G~~~~Gi~la~~~~~~~~~vi~ 214 (404)
-..|+ ||+...+...+. -+.|++. || .....+++.-.|+.+++.
T Consensus 104 ~~Tpt-----------Ei~~A~~~Ga~~vK~FPa~~~GG--~~yikal~~plp~~~l~p 149 (201)
T PRK06015 104 AATPS-----------EVMALREEGYTVLKFFPAEQAGG--AAFLKALSSPLAGTFFCP 149 (201)
T ss_pred CCCHH-----------HHHHHHHCCCCEEEECCchhhCC--HHHHHHHHhhCCCCcEEe
Confidence 34442 555544433333 3667655 45 566778888889888864
No 423
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=45.29 E-value=1e+02 Score=29.72 Aligned_cols=58 Identities=24% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCCCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHH----HHHHHcCCEEEEeC
Q psy14801 69 GVLKPGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKM--SKEKV----YTMKALGAKIIRTQ 127 (404)
Q Consensus 69 g~~~~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~----~~l~~~Ga~v~~v~ 127 (404)
|.+ .|.+|+..+.+ |.+.|++.+++++|+++.++.|+.. +..-+ +..+..|+++..+.
T Consensus 151 g~l-~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPY-KDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCc-CCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 443 34566666654 7888888888888888888888743 22222 22345677776553
No 424
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=45.29 E-value=1.2e+02 Score=28.64 Aligned_cols=52 Identities=29% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 70 VLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 70 ~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.++++..|+... ++..|.+++..|+.+|+++++..+ ++.+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcEE
Confidence 456667765544 556999999999999998666533 3466677778887544
No 425
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=45.22 E-value=1.1e+02 Score=29.67 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHH----HHcCCEEEEe
Q psy14801 74 GYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMK--MSKEKVYTM----KALGAKIIRT 126 (404)
Q Consensus 74 ~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~--~~~~k~~~l----~~~Ga~v~~v 126 (404)
|.+|+..+.+ |.+.+++.+++++|++++++-|+. .+..-++.+ +..|+++..+
T Consensus 154 glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (338)
T PRK02255 154 DCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT 213 (338)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 4566555553 777888888888888888887774 233333333 2357776654
No 426
>PRK09134 short chain dehydrogenase; Provisional
Probab=45.12 E-value=2.2e+02 Score=25.56 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=36.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|..++....+.|.+++++.....+. .-...++..|.++..+..
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 468888899999999999999999887765432211 112234445777776654
No 427
>PRK12414 putative aminotransferase; Provisional
Probab=45.05 E-value=3e+02 Score=26.73 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=44.2
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-CCC-ChhhHHHHHHHHHHhCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDK-SYD-HPEGMIAGAHRIASQMKN 151 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~-~~~-~~~~~~~~a~~l~~~~~~ 151 (404)
..|+..+++..+..++..+- ..|=++.+.-|.- ..-...++.+|++++.++.+. ++. +.+. .++..+....
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y--~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~----l~~~l~~~~~ 164 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPGDEVIYFEPSF--DSYAPIVRLQGATPVAIKLSPEDFRVNWDE----VAAAITPRTR 164 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCc--cchHHHHHHcCCEEEEEecCccccccCHHH----HHhhcCcccE
Confidence 45666677777766655432 2344433333332 223445667899999887531 221 2211 2222222223
Q ss_pred cEeecCCCCCCChh
Q psy14801 152 AVVLDQFRNPNNPL 165 (404)
Q Consensus 152 ~~~~~e~~np~~si 165 (404)
.++++...||.|.+
T Consensus 165 ~v~i~~p~NPTG~~ 178 (384)
T PRK12414 165 MIIVNTPHNPSATV 178 (384)
T ss_pred EEEEcCCCCCCCcC
Confidence 56666668888753
No 428
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=45.00 E-value=43 Score=31.73 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC-CcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP-SCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~-~~~vi~V~p~~~ 220 (404)
--+..|+++.+.-.|+.+++.+|-|+ .|-+.++....+ ..+|++++-+..
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~--GGhS~~il~~~~~~g~VigiD~D~~ 55 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGG--GGHSRAILERLGPKGRLIAIDRDPD 55 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCC--hHHHHHHHHhCCCCCEEEEEcCCHH
Confidence 34456888888767888999999988 888888887775 689999987653
No 429
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=45.00 E-value=2.5e+02 Score=26.32 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 57 AAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 57 ~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
.+...+..+.+. +..-.+++++.-+.|..|.++|..++.+|.+++++-. +..+......+|.+.
T Consensus 133 ~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R---~~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 133 TAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGAR---SSADLARITEMGLIP 197 (287)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHCCCee
Confidence 344444444433 2223457899999999999999999999997776633 234455555666553
No 430
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=44.83 E-value=1.4e+02 Score=28.84 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=40.7
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
...++++++|+...+|..|.+++..|+.+|.+.++.+. .+..|...++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~--~~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVD--IVDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 45566777776667789999999999999997444433 346777788888885443
No 431
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=44.79 E-value=52 Score=26.13 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801 86 GIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ 127 (404)
Q Consensus 86 g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~ 127 (404)
|..+..+|+.+|.+++++. .++.|++.++.+|++.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~---~~~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD---RSEEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEE---CCHHHHHHHHhhcccccccc
Confidence 5667778888885555554 35677888888887766554
No 432
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.68 E-value=78 Score=30.34 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=28.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
++|..-++|..|.++|..++..|++++++=+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 56888899999999999999999999999664
No 433
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.18 E-value=1.7e+02 Score=25.74 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=36.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKE-KVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|..|..++......|.+++++.....+.. ....++..|.++..+..
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 4678888999999999988888999655543322111 13445556777777654
No 434
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=44.15 E-value=80 Score=30.46 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=37.0
Q ss_pred CCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q psy14801 73 PGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVY----TMKALGAKIIRTQ 127 (404)
Q Consensus 73 ~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~----~l~~~Ga~v~~v~ 127 (404)
.|.+|...+.+ |.+.++..+++++|++++++-|+... ..-.+ ..+..|+++..+.
T Consensus 155 ~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 155 NEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 35677666665 78888888899999999998887532 22222 2345677776553
No 435
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=43.99 E-value=99 Score=29.32 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=37.8
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
....+++.+|+...+|-.|.++...|+.+|...++.+ ..+..+...++.+|++-
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 4556677777666667888888889999997444444 33467777778888643
No 436
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=43.95 E-value=2.3e+02 Score=26.86 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=37.3
Q ss_pred hCCCCCCCEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q psy14801 68 AGVLKPGYTIVEPSS-GNTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVYT----MKALGAKIIRTQ 127 (404)
Q Consensus 68 ~g~~~~~~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~----l~~~Ga~v~~v~ 127 (404)
.|.+ .|.+|...+. .|...|++.+++++|+++.++.|+.. +....+. .+..|+++....
T Consensus 143 ~g~l-~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 143 FGKL-KGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred hCCC-CCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4543 3445544443 58888888888888988888888743 2333333 245677776553
No 437
>PRK06949 short chain dehydrogenase; Provisional
Probab=43.90 E-value=1.7e+02 Score=26.28 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=25.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEec
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 105 (404)
..+|+..+|.-|.++|......|.+++++..
T Consensus 11 ~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 11 VALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578888999999999999999998776644
No 438
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=43.90 E-value=76 Score=30.64 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHH----HHHHHcCCEEEEeC
Q psy14801 73 PGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKMS--KEKV----YTMKALGAKIIRTQ 127 (404)
Q Consensus 73 ~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~----~~l~~~Ga~v~~v~ 127 (404)
.|.+|...+.+ |.+.|+..+++++|++++++.|+... ..-. +..+..|.++..+.
T Consensus 155 ~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 155 NEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred CCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 45677666665 77899999999999999999887532 2222 23445688877654
No 439
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=43.83 E-value=99 Score=29.87 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 63 EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 63 ~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
-.+....+.+||++++...-|--|.|.-..|+..|-.-+|-+. ..+.|+++.+.|||.=.+-+.
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD--~~~~Kl~~A~~fGAT~~vn~~ 238 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVD--INPEKLELAKKFGATHFVNPK 238 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEe--CCHHHHHHHHhcCCceeecch
Confidence 3456677888999999999999999999999999998888775 447889999999997665543
No 440
>PRK08637 hypothetical protein; Provisional
Probab=43.82 E-value=3.2e+02 Score=26.63 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=40.4
Q ss_pred EEEecCCChHHHHHHHHHH-HcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCC--CC-CCCChhhHHHHHHHHHHhCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQN--DK-SYDHPEGMIAGAHRIASQMK 150 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~-~~~~~k~~~l~~~Ga~v~~v~~--~~-~~~~~~~~~~~a~~l~~~~~ 150 (404)
.|+..+++..+..++..+- ..|=. |++|. .-+.........+|++++.++- ++ .+ +.+...+..+.. .+..
T Consensus 71 ~I~it~G~~~al~~~~~~l~~~gd~--Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~-d~~~l~~~~~~~-~~~~ 146 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLFVDQGDT--VLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGF-DTDALKEALQAA-YNKG 146 (388)
T ss_pred eeeEccchHHHHHHHHHHhcCCCCE--EEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcC-CHHHHHHHHHhh-ccCC
Confidence 4566666677766555432 23433 33332 3333332222358999998875 21 22 222221111111 1222
Q ss_pred Cc-EeecCCCCCCChh
Q psy14801 151 NA-VVLDQFRNPNNPL 165 (404)
Q Consensus 151 ~~-~~~~e~~np~~si 165 (404)
.. ++++...||+|.+
T Consensus 147 ~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 147 KVIVILNFPNNPTGYT 162 (388)
T ss_pred CEEEEEeCCCCCCCCC
Confidence 33 4445569998854
No 441
>PRK06182 short chain dehydrogenase; Validated
Probab=43.74 E-value=2.5e+02 Score=25.50 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=43.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++- .+.+...+..+++.+.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv----~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDV----TDEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeC----CCHHHHHHHHHHHHHh
Confidence 46788889999999999988899998876432 3445555556766666543 3444443444444443
No 442
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=43.58 E-value=1.4e+02 Score=26.69 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=36.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK--EKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|.-|.++|..-.+.|.++++..-..... .....++..+.+++.+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 457888899999999998888999877654332111 223445666777777664
No 443
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.28 E-value=2.2e+02 Score=24.63 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee--cCCCCCC
Q psy14801 86 GIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL--DQFRNPN 162 (404)
Q Consensus 86 g~a~A~~a~~~G~~~~iv~p~-~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~--~e~~np~ 162 (404)
|..+.++++.+|.+..--++. +.-..-.+.....|..|.+++++. ....+.++.+.++.++.-.. +.|++|.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~-----~v~~~~~~~l~~~yP~l~i~g~~g~f~~~ 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKP-----DVLQQLKVKLIKEYPKLKIVGAFGPLEPE 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCH-----HHHHHHHHHHHHHCCCCEEEEECCCCChH
Confidence 467888999998653221221 111233444566788999998732 22234456677766654332 3444331
Q ss_pred ChhhHHhhHHHHHHHHhCC-CcCEEEEccCCCh
Q psy14801 163 NPLSHYETTAEEILRDTGG-KVDMIVLGCGTGG 194 (404)
Q Consensus 163 ~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~ 194 (404)
. + .++++++.. .||.++|..|+=-
T Consensus 88 ---~--~---~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 ---E--R---KAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ---H--H---HHHHHHHHHcCCCEEEEEcCCcH
Confidence 1 1 235555443 5899999988865
No 444
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=43.25 E-value=2.5e+02 Score=25.28 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=55.0
Q ss_pred CCChHH--HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc-Eeec-
Q psy14801 81 SSGNTG--IGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA-VVLD- 156 (404)
Q Consensus 81 ssGN~g--~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~-~~~~- 156 (404)
|+|-+| +++|..=..+|-+++|. +....+++..+..--+++-.- .+..+.+...+.++.+.++.|.. +.++
T Consensus 11 TGG~sGIGl~lak~f~elgN~VIi~---gR~e~~L~e~~~~~p~~~t~v--~Dv~d~~~~~~lvewLkk~~P~lNvliNN 85 (245)
T COG3967 11 TGGASGIGLALAKRFLELGNTVIIC---GRNEERLAEAKAENPEIHTEV--CDVADRDSRRELVEWLKKEYPNLNVLINN 85 (245)
T ss_pred eCCcchhhHHHHHHHHHhCCEEEEe---cCcHHHHHHHHhcCcchheee--ecccchhhHHHHHHHHHhhCCchheeeec
Confidence 344455 55555555567777765 334556665555433333221 13344555555677777776542 3321
Q ss_pred -------CCCCCCChhhH-Hh----------hHHHHHHHHhCCCcCEEEEccCCCh
Q psy14801 157 -------QFRNPNNPLSH-YE----------TTAEEILRDTGGKVDMIVLGCGTGG 194 (404)
Q Consensus 157 -------e~~np~~si~g-~~----------~~a~ei~~q~~~~~~~vvv~~gsG~ 194 (404)
++.++..+.+- -. +...+++..+.++|...|+-++||=
T Consensus 86 AGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGL 141 (245)
T COG3967 86 AGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGL 141 (245)
T ss_pred ccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 33333333320 11 1122344445556888999999883
No 445
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=43.23 E-value=2e+02 Score=26.00 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=42.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHH--HHHHHH-HcCCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKE--KVYTMK-ALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~--k~~~l~-~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+.+++.-|.++|..-...|.+++++.....+.. ..+.++ ..|.++..++. +..+.+...+...++.++
T Consensus 10 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPL--NILEPETYKELFKKIDED 84 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEc--CCCCHHHHHHHHHHHHHh
Confidence 5678888889999999988899999777643322111 112222 34666666654 344444444444444443
No 446
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=43.20 E-value=2.3e+02 Score=27.13 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=51.2
Q ss_pred EEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhCCCcE
Q psy14801 76 TIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQMKNAV 153 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~~~~~ 153 (404)
.|+..++...+..++..+- ..|= .|++|.-.-..-....+.+|++++.++-+.++. +.+.. .+.+.+.....+
T Consensus 83 ~I~~t~G~~~~i~~~~~~~~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l---~~~~~~~~~~~v 157 (356)
T PRK04870 83 DVLLGNGSDELIQLLALACAKPGA--TVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAM---LAAIAEHRPALV 157 (356)
T ss_pred cEEEcCCHHHHHHHHHHHhcCCCC--EEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHH---HHHhhcCCCCEE
Confidence 4665555566666555332 3343 344554333445566888999999998643322 22111 222222233456
Q ss_pred eecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801 154 VLDQFRNPNNPLSHYETTAEEILRDT 179 (404)
Q Consensus 154 ~~~e~~np~~si~g~~~~a~ei~~q~ 179 (404)
++....||.|.+-..++. .+|++.+
T Consensus 158 ~l~~p~NPtG~~~~~~~~-~~i~~~~ 182 (356)
T PRK04870 158 FLAYPNNPTGNLFDDADV-ERIIEAA 182 (356)
T ss_pred EEcCCCCCCCCCCCHHHH-HHHHHHC
Confidence 666568998765422222 3455544
No 447
>PRK05650 short chain dehydrogenase; Provisional
Probab=43.09 E-value=1.6e+02 Score=26.76 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=35.5
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
.+|+..+|.-|.+++..-...|.+++++...... ......++..|.++..+..
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 5788889999999999888889987776543211 1122335556767666654
No 448
>PRK07063 short chain dehydrogenase; Provisional
Probab=43.02 E-value=2.1e+02 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=24.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
..+|+.++|--|.++|..-...|.+++++-
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567888888999999998888999877654
No 449
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=42.86 E-value=1.3e+02 Score=28.26 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=25.2
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK 107 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 107 (404)
.+++++.-++|-+++|++++....|++-+.++.++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44677777788888888888888888655555443
No 450
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=42.84 E-value=1.1e+02 Score=27.38 Aligned_cols=55 Identities=36% Similarity=0.353 Sum_probs=37.8
Q ss_pred HHHhCCCCCCCEEEec-CCC---hHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q psy14801 65 AETAGVLKPGYTIVEP-SSG---NTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGA 121 (404)
Q Consensus 65 a~~~g~~~~~~~vv~~-ssG---N~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga 121 (404)
|++.|.-. +.+|++ |.| .+-+|||.+|++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 35 AlAAG~nA--kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWNA--KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhccccc--eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 44455422 345544 554 46899999999999999999998655 345556666665
No 451
>PRK07814 short chain dehydrogenase; Provisional
Probab=42.82 E-value=1.8e+02 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=34.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|--|.+++......|.+++++...... ....+.++..|.++..+..
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 66 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAA 66 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56888889999999999888899987766432111 1112233444666655543
No 452
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=42.61 E-value=2.5e+02 Score=25.16 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=33.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKV-YTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~-~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|--|.++|......|.+++++... ..+. ......+.++..+..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~ 59 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIK---PARARLAALEIGPAAIAVSL 59 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHHhCCceEEEEc
Confidence 56888889999999999999999987776432 2222 222334555555543
No 453
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.40 E-value=2.3e+02 Score=25.70 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=38.3
Q ss_pred CEEEecCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-Hc-CCEEEEeCCCCCCCChhhHHHHHHHHHHh
Q psy14801 75 YTIVEPSS--GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMK-AL-GAKIIRTQNDKSYDHPEGMIAGAHRIASQ 148 (404)
Q Consensus 75 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~-~~-Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~ 148 (404)
..+|+.++ +.-|.++|..-.+.|.++++.-.......+++.+. .. |.+++.+.. +..+.++..+..+++.++
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPC--DVTSDEEITACFETIKEE 84 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEec--CCCCHHHHHHHHHHHHHh
Confidence 34566654 67889999988889998776533222223333332 22 445555543 233443443344444443
No 454
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=42.18 E-value=2e+02 Score=25.65 Aligned_cols=53 Identities=38% Similarity=0.527 Sum_probs=35.7
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
..+.++.+|+....|..|.+++..++..|.+++++.+ ++.+.+.++.+|++.+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 182 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR---SDEKLELAKELGADHV 182 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHhCCcee
Confidence 3335566665555555999999999999987766643 3456666777776543
No 455
>PLN02712 arogenate dehydrogenase
Probab=42.13 E-value=4.6e+02 Score=28.02 Aligned_cols=119 Identities=12% Similarity=0.062 Sum_probs=65.7
Q ss_pred CCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcE
Q psy14801 74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV 153 (404)
Q Consensus 74 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~ 153 (404)
+.+|..-+.|+.|.++|...+..|.+++++-+.. . . +....+|+.. +. +. .++.+.....+
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~--~-~-~~a~~~Gv~~--~~------~~-------~el~~~~aDvV 429 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD--Y-S-DEAQKLGVSY--FS------DA-------DDLCEEHPEVI 429 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh--H-H-HHHHHcCCeE--eC------CH-------HHHHhcCCCEE
Confidence 3578777899999999999999998877664431 2 2 3345678642 21 11 12222212344
Q ss_pred eecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC-CcEEEEEcCCCC
Q psy14801 154 VLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP-SCKLVGADPFGS 220 (404)
Q Consensus 154 ~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~-~~~vi~V~p~~~ 220 (404)
++. -|...+ ..+..++.... -+++.+|+.++|+. .-+...+....+ +.++++..|-..
T Consensus 430 ILa---vP~~~~---~~vi~~l~~~~-lk~g~ivvDv~SvK--~~~~~~~~~~l~~~~~~v~~HPm~G 488 (667)
T PLN02712 430 LLC---TSILST---EKVLKSLPFQR-LKRSTLFVDVLSVK--EFPRNLFLQHLPQDFDILCTHPMFG 488 (667)
T ss_pred EEC---CChHHH---HHHHHHHHHhc-CCCCcEEEECCCcc--HHHHHHHHHhccCCCceEeeCCCCC
Confidence 432 121111 22222322111 24688999999987 444445554443 467888887544
No 456
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.79 E-value=2.2e+02 Score=25.34 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.2
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEec
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 105 (404)
..+|+.++|--|.+++......|.+++++..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 5688888999999999988899998877643
No 457
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.74 E-value=2.4e+02 Score=27.76 Aligned_cols=79 Identities=25% Similarity=0.217 Sum_probs=58.2
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 43 K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
|..+..+ | -+.+-....+. .--|. +..+..+||..+..+|+.+-..|=.-.|++|.-+-......+...||+
T Consensus 26 ~sg~i~~-G-~~v~~FE~~~a--e~~G~----k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~ 97 (374)
T COG0399 26 KSGWLTG-G-PFVRRFEQAFA--EYLGV----KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAK 97 (374)
T ss_pred HcCCeec-C-hHHHHHHHHHH--HHhCC----CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCe
Confidence 4444544 3 34444444332 22365 679999999999999988555777778889998888999999999999
Q ss_pred EEEeCCC
Q psy14801 123 IIRTQND 129 (404)
Q Consensus 123 v~~v~~~ 129 (404)
.++|+.+
T Consensus 98 PVFvDid 104 (374)
T COG0399 98 PVFVDID 104 (374)
T ss_pred EEEEecC
Confidence 9999875
No 458
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.58 E-value=2.5e+02 Score=25.21 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=40.8
Q ss_pred CEEEecCC--ChHHHHHHHHHHHcCCeEEEEecCCC---------CHH---HHHHHHHcCCEEEEeCCCCCCCChhhHHH
Q psy14801 75 YTIVEPSS--GNTGIGLAMVAAIKGYKMVVVMPMKM---------SKE---KVYTMKALGAKIIRTQNDKSYDHPEGMIA 140 (404)
Q Consensus 75 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~---------~~~---k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~ 140 (404)
..+|+..+ |.-|.++|..-...|.+++++..... ... -...+..+|.+++.++. +..+..+..+
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~ 84 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEI--DLSQPYAPNR 84 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEEC--CCCCHHHHHH
Confidence 45666666 36888899888888998777643311 111 12234456777776664 3444444444
Q ss_pred HHHHHHHh
Q psy14801 141 GAHRIASQ 148 (404)
Q Consensus 141 ~a~~l~~~ 148 (404)
..+++.++
T Consensus 85 ~~~~~~~~ 92 (256)
T PRK12748 85 VFYAVSER 92 (256)
T ss_pred HHHHHHHh
Confidence 44444443
No 459
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=41.58 E-value=1.5e+02 Score=28.62 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR 125 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~ 125 (404)
+..++|++++...+|-.|.+++..|+.+|.+.+++.. .+..+...++.+|++.+.
T Consensus 176 ~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~--~~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 176 GLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS--SDKKREEALEHLGADDYL 230 (357)
T ss_pred ccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHhcCCcEEe
Confidence 4445677776667899999999999999998655533 222333445678986443
No 460
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=41.45 E-value=77 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.2
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
|..-++|..|.++|..++..|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 566788999999999999999999999764
No 461
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.38 E-value=1.9e+02 Score=25.70 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=36.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+.++|--|.+++......|.++++....... ......++..|.++..+..
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 56788888999999999888899987665432211 1223455667777666554
No 462
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=41.33 E-value=1.7e+02 Score=26.08 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=42.8
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEK-VYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA 146 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k-~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~ 146 (404)
..+|+..+|-.|.+++..-...|.+++++........+ ...+...+.++..+.. +..+.....+..+++.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA--DVTKEDEIADMIAAAA 73 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC--CCCCHHHHHHHHHHHH
Confidence 45788889999999999888899987776543211111 2223445677776654 3444444433334443
No 463
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=41.17 E-value=1.8e+02 Score=27.59 Aligned_cols=59 Identities=25% Similarity=0.229 Sum_probs=37.8
Q ss_pred hCCCCCCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCCC--HHHH----HHHHHcCCEEEEeC
Q psy14801 68 AGVLKPGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKMS--KEKV----YTMKALGAKIIRTQ 127 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~----~~l~~~Ga~v~~v~ 127 (404)
.|.+ .|.+|+..+.+ |.+.|++.+++++|++++++-|+... .... +..+..|+++..++
T Consensus 142 ~g~l-~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 142 FGDV-SKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred hCCc-CCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 4543 34566666655 66788888888889998888887532 2222 22355688877654
No 464
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=41.11 E-value=2.2e+02 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 53 LKDRAAWRMIEDAETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 53 ~K~R~a~~~l~~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
.++-.+...+..+.+-+. +.||++| ||.+++.++.+ +..++.+++.|.
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~ 407 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRN 407 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCC
Confidence 344444444444544443 3444444 67777655544 455666666554
No 465
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=41.00 E-value=3.3e+02 Score=26.09 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=42.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 154 (404)
+.|+..+++..+..++..+-..+-.-.|++|.-.-..-...++.+|++++.++. .+ ++.+.....++
T Consensus 87 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~----------~l~~~~~~~v~ 153 (364)
T PRK07865 87 AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---LT----------ELGPQRPALIW 153 (364)
T ss_pred ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---hh----------hCCcccceEEE
Confidence 457777777777776543321222234555653323334556789999998752 11 11112224566
Q ss_pred ecCCCCCCChh
Q psy14801 155 LDQFRNPNNPL 165 (404)
Q Consensus 155 ~~e~~np~~si 165 (404)
+....||.|.+
T Consensus 154 ~~~p~NPtG~~ 164 (364)
T PRK07865 154 LNSPSNPTGRV 164 (364)
T ss_pred EcCCCCCCCcc
Confidence 66668888743
No 466
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=40.83 E-value=1.7e+02 Score=28.21 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=46.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCC---hhhHHHHHHHHHHhCCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH---PEGMIAGAHRIASQMKN 151 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~---~~~~~~~a~~l~~~~~~ 151 (404)
+.|+..++...++.++..+-..| + .|++|.=+-..-...++.+|++++.++.+.+... ..+ .+...+.. ....
T Consensus 75 ~~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 150 (360)
T PRK07392 75 EWILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLR-LQTLPPQL-TPND 150 (360)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccC-HHHHHHhc-cCCC
Confidence 34666666677777665442234 3 3444543334446678889999999876322110 011 11121111 1224
Q ss_pred cEeecCCCCCCChhh
Q psy14801 152 AVVLDQFRNPNNPLS 166 (404)
Q Consensus 152 ~~~~~e~~np~~si~ 166 (404)
.++++...||+|.+-
T Consensus 151 ~~~l~nP~NPTG~~~ 165 (360)
T PRK07392 151 GLLLNNPHNPTGKLW 165 (360)
T ss_pred EEEEeCCCCCCCCCc
Confidence 456666799987543
No 467
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=40.63 E-value=1.1e+02 Score=25.90 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.8
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126 (404)
Q Consensus 77 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v 126 (404)
+|...+|+.|..++......|.++++++....+..+ ..+.+++..
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~ 46 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQG 46 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEES
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----cccccccee
Confidence 678889999999999999999999999976543333 455555544
No 468
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.53 E-value=1e+02 Score=31.13 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=37.5
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEE
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVYTMKALGAKIIR 125 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~l~~~Ga~v~~ 125 (404)
++|+..+.|..|+++|.+.+..|.+++++-.... .....+.++..|.+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 5788889999999999999999999887743321 12334567778877653
No 469
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=40.52 E-value=1.7e+02 Score=27.23 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=37.9
Q ss_pred HhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801 67 TAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123 (404)
Q Consensus 67 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v 123 (404)
....+.++.+|+. ..+|..|.+++..|+.+|.+.++... +..+.+.++.+|++-
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 187 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR---RDAGVAELRALGIGP 187 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHhcCCCE
Confidence 3455667777665 45689999999999999998766643 334556666677743
No 470
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=40.15 E-value=58 Score=30.26 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=33.8
Q ss_pred hHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 170 TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 170 ~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
.++..|++.+.-.++..|++.|.|. ..++..+....+ ++++++.+..
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~--G~lt~~L~~~~~--~v~avE~d~~ 75 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGL--GALTEPLLERAA--KVTAVEIDRD 75 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCc--cHHHHHHHHhCC--cEEEEECCHH
Confidence 4555777777655667899999988 555666665554 8999998864
No 471
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.07 E-value=3e+02 Score=25.23 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=109.7
Q ss_pred CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHH
Q psy14801 37 LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSK-EKVYT 115 (404)
Q Consensus 37 g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~ 115 (404)
+.++.+-.+++.- +-+-. .+.. .+.+.-++...-.+||.+..+--|+..|..++|-||-..-. .+.+
T Consensus 28 ~~klaIVIddlG~--~~~~~-------~~i~--~Lp~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e- 95 (250)
T COG2861 28 GPKLAIVIDDLGL--SQTGT-------QAIL--ALPPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIE- 95 (250)
T ss_pred CceEEEEECCccc--cHHHH-------HHHH--hCCccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCC-
Confidence 3478888777732 22211 1222 23344789999999999999999999999999999964211 1111
Q ss_pred HHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHh-hHHHHHHHHhCCCcCEEEEccC-CC
Q psy14801 116 MKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYE-TTAEEILRDTGGKVDMIVLGCG-TG 193 (404)
Q Consensus 116 l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~-~~a~ei~~q~~~~~~~vvv~~g-sG 193 (404)
.| .+.+. +..++..++.+....+.++...++ |-.||..--. ....-+++.++ +.+..|+.+| +|
T Consensus 96 ---~g---tL~~~----~s~~e~~~rl~~a~~~v~~~~Gln---NhmGs~~tsn~~aM~~~m~~Lk-~r~l~flDs~T~a 161 (250)
T COG2861 96 ---PG---TLRPG----MSAEEILRRLRKAMNKVPDAVGLN---NHMGSRFTSNEDAMEKLMEALK-ERGLYFLDSGTIA 161 (250)
T ss_pred ---CC---CcccC----CCHHHHHHHHHHHHhhCccceeeh---hhhhhhhcCcHHHHHHHHHHHH-HCCeEEEcccccc
Confidence 12 11121 123445555555555555555543 3333321112 22334556665 4566666655 45
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccCcEEecChHHH---H
Q psy14801 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDT---F 270 (404)
Q Consensus 194 ~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~---~ 270 (404)
++++|.. | ..-+++.+ .. ..+.|. ..+..++ +
T Consensus 162 ~S~a~~i-A---k~~gVp~~------------------------------------~r---dvfLD~--e~~~~~V~kql 196 (250)
T COG2861 162 NSLAGKI-A---KEIGVPVI------------------------------------KR---DVFLDD--EDTEAAVLKQL 196 (250)
T ss_pred cchhhhh-H---hhcCCcee------------------------------------ee---eeeecC--cCCHHHHHHHH
Confidence 5444421 1 01111110 00 001121 1223333 3
Q ss_pred HHHHHHHHhcCcEeccc--hhhHHHHHHHHHHhcC-CCCeEEEE
Q psy14801 271 LMARRLIKSEGLLVGGS--SGTAMHVACQAAKSLR-PDQRCVVI 311 (404)
Q Consensus 271 ~~~~~l~~~~gi~~~~~--tg~tlag~~~~lk~~~-~~~~vv~v 311 (404)
+.+..++++.|...+.| .=.|++++.+++.+.. .+..+|-+
T Consensus 197 ~~~~~~Ark~G~ai~IGh~~~~Tv~vl~~~~~~l~~~gIelV~~ 240 (250)
T COG2861 197 DAAEKLARKNGSAIGIGHPHKNTVAVLQQWLDELPARGIELVPV 240 (250)
T ss_pred HHHHHHHHhcCceEEecCCchhHHHHHHHHHHhCCCCCeEEecH
Confidence 45667888889777665 4578999999998876 66666544
No 472
>PRK08175 aminotransferase; Validated
Probab=40.05 E-value=3.6e+02 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCEEEecCCChHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVA-AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQND 129 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a-~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~ 129 (404)
|...++..++++.|..+...+ -..|- .|++|.-.-..-....+..|++++.++.+
T Consensus 90 ~~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 145 (395)
T PRK08175 90 PESEAIVTIGSKEGLAHLMLATLDHGD--TVLVPNPSYPIHIYGAVIAGAQVRSVPLV 145 (395)
T ss_pred CCCcEEEccCcHHHHHHHHHHhCCCCC--EEEEcCCCCcchHHHHHHcCCeEEEEecc
Confidence 333566666667776654422 23353 34444422222233346789999988763
No 473
>PRK08264 short chain dehydrogenase; Validated
Probab=39.98 E-value=1.3e+02 Score=26.55 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=33.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|......|. +++++.... .+.+. .+.++..+..
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~---~~~~~---~~~~~~~~~~ 56 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP---ESVTD---LGPRVVPLQL 56 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEecCh---hhhhh---cCCceEEEEe
Confidence 568888899999999999999999 766664332 22221 5566666554
No 474
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.94 E-value=2.8e+02 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=27.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 106 (404)
+++...++||-|.++|..-...|++++|--.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 35778899999999999999999998886443
No 475
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=39.85 E-value=1.1e+02 Score=24.22 Aligned_cols=50 Identities=22% Similarity=0.138 Sum_probs=30.9
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+.++.+..-.+...+--.|..+|++.+++.|...+++-.+.++..|.+++
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 56666666677777777777778888888887666666777777776654
No 476
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=39.79 E-value=2.4e+02 Score=26.64 Aligned_cols=53 Identities=30% Similarity=0.426 Sum_probs=36.8
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
...++++..|+.-.+|-.|.+++..|+.+|++.+++. ..+..+.+.++.+|.+
T Consensus 160 ~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~--~~s~~~~~~~~~~g~~ 212 (343)
T cd08235 160 KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVS--DLNEFRLEFAKKLGAD 212 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 3456777776655678888999999999999944433 2345566666777764
No 477
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=39.74 E-value=1.1e+02 Score=29.72 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=39.8
Q ss_pred CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
+.++++++|+....|..|.+++..|+.+|...++++.. +..|.+.++.+|++-+
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 56677788766678999999999999999854444422 3457888888998544
No 478
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=39.67 E-value=3.7e+02 Score=26.27 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=42.6
Q ss_pred CCeEEEEeCCC---CCCCChhhHHHHHH--HHHHHH-hCCCCCCCEEEecCCC--hHHHHHHHHHHHcCCeEEEEecCCC
Q psy14801 37 LPTTDAKCEFM---NPTGSLKDRAAWRM--IEDAET-AGVLKPGYTIVEPSSG--NTGIGLAMVAAIKGYKMVVVMPMKM 108 (404)
Q Consensus 37 g~~l~~K~E~~---~ptGS~K~R~a~~~--l~~a~~-~g~~~~~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~ 108 (404)
|++ ++|++.. ++.-+++.|..... +..+.+ .|.. ..++...++ +-.+..|..+...|.+++.+.|...
T Consensus 159 GvD-~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~---~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 159 GID-LIKDDELLADQPYAPFEERVRACMEAVRRANEETGRK---TLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred CCC-eeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCc---ceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 455 4565543 45788888876643 444442 2441 223333334 5557788899999999999998743
No 479
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=39.65 E-value=2e+02 Score=27.18 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=37.7
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
...+.++.+|+.-.+|..|.++...|+.+|+++++.. .+..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~---~~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVD---IDDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHhCCC
Confidence 3445666776555588999999999999999876653 345667777778873
No 480
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=39.63 E-value=58 Score=28.17 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCC
Q psy14801 169 ETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFG 219 (404)
Q Consensus 169 ~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~ 219 (404)
+|.++.|.+..++ +++..|++.|+|. .++...+.... +..++++++...
T Consensus 14 ~~~~~~~~~~~~~~~~i~~g~~VLDiG~Gt--G~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 14 SRASFKLLQLNQKFKLIKPGDTVLDLGAAP--GGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred hhHHHHHHHHHHHhcccCCCCEEEEecCCC--CHHHHHHHHHhCCCceEEEEeccc
Confidence 4666555554331 3667788888877 55666665554 556899998865
No 481
>PRK06924 short chain dehydrogenase; Provisional
Probab=39.45 E-value=1.8e+02 Score=25.99 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=40.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI 145 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l 145 (404)
..+|+.++|.-|.++|......|.+++++.... .+.........+.+++.+.. +..+.++..+..++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSL--DLQDVHELETNFNEI 70 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEe--cCCCHHHHHHHHHHH
Confidence 457888899999999998888999877764322 12222223344666655554 333444443334443
No 482
>PRK07677 short chain dehydrogenase; Provisional
Probab=39.42 E-value=2.2e+02 Score=25.56 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=34.1
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~ 128 (404)
..+|+..+|.-|.++|......|.+++++--.... ....+.++..+.+++.+..
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQM 57 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45788888899999999888999976665322111 1112234445666666654
No 483
>PRK07201 short chain dehydrogenase; Provisional
Probab=39.31 E-value=1.7e+02 Score=30.82 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM 149 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~ 149 (404)
..+|+..+|.-|.++|..-...|.+++++...... ....+.++..|.++..+.. +..+.++..+..+++.++.
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTC--DLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEe--cCCCHHHHHHHHHHHHHhc
Confidence 45788888999999999888889987776543211 1122344556777776664 3445555444455554443
No 484
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.30 E-value=2.8e+02 Score=24.95 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=23.1
Q ss_pred CEEEecCC--ChHHHHHHHHHHHcCCeEEEEe
Q psy14801 75 YTIVEPSS--GNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 75 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~ 104 (404)
..+|+..+ +.-|.++|..-.+.|.++++.-
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 45666666 5789999998889999877663
No 485
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=39.15 E-value=1.7e+02 Score=26.42 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.4
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEe
Q psy14801 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 76 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
.+|+.+++.-|.++|......|.++++.-
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 57888899999999998888999866653
No 486
>PLN02253 xanthoxin dehydrogenase
Probab=39.14 E-value=1.9e+02 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
..+|+..+|.-|.++|......|.+++++-
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~ 49 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVD 49 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 568899999999999998888999877764
No 487
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=39.12 E-value=97 Score=33.54 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCEEEecCCChHHHHHHHHHHHcCCe-EEEEecCC---CC--HHHHHHHHHcCCEEEE
Q psy14801 73 PGYTIVEPSSGNTGIGLAMVAAIKGYK-MVVVMPMK---MS--KEKVYTMKALGAKIIR 125 (404)
Q Consensus 73 ~~~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~---~~--~~k~~~l~~~Ga~v~~ 125 (404)
.|++||..++||+|.-+|..+.++|.+ ++++.... .+ ...++.++..|.+++.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 467899999999999999999999997 88887642 22 2334456777877664
No 488
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.07 E-value=54 Score=27.86 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..|++++...++..|++.|.|. ..++..+... +.++++|+.+..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~--G~lt~~l~~~--~~~v~~vE~~~~ 46 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGK--GALTEELLER--AARVTAIEIDPR 46 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCc--cHHHHHHHhc--CCeEEEEECCHH
Confidence 4567777655677899999888 4455555444 458999998754
No 489
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=39.03 E-value=2.3e+02 Score=25.91 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=37.9
Q ss_pred hCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801 68 AGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII 124 (404)
Q Consensus 68 ~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~ 124 (404)
.+.+.++.+|+... +|..|.+++..++.+|.+.+++. .+..+.+.++.+|++-+
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~ 185 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHV 185 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEE
Confidence 35556667765555 78999999999999998865543 34566667777887433
No 490
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=38.85 E-value=1.3e+02 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCCCCE-EEecCCChHH-HHHHHHHHHcCCeEEEEecCCCC------HHHHHHHHHcCCEEE
Q psy14801 61 MIEDAETAGVLKPGYT-IVEPSSGNTG-IGLAMVAAIKGYKMVVVMPMKMS------KEKVYTMKALGAKII 124 (404)
Q Consensus 61 ~l~~a~~~g~~~~~~~-vv~~ssGN~g-~a~A~~a~~~G~~~~iv~p~~~~------~~k~~~l~~~Ga~v~ 124 (404)
+.....+.|. ++ +|+.-..|.| .+.+.-+..+|++++++.....+ ..-++.|+..|++|+
T Consensus 129 L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3444445565 45 4555577888 67788888899999998775322 233666777788763
No 491
>PRK08251 short chain dehydrogenase; Provisional
Probab=38.71 E-value=2.4e+02 Score=25.02 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=40.3
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHc--CCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEK-VYTMKAL--GAKIIRTQNDKSYDHPEGMIAGAHRIAS 147 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k-~~~l~~~--Ga~v~~v~~~~~~~~~~~~~~~a~~l~~ 147 (404)
..+|+.++|.-|.++|..-...|.+++++......... ...+... |.++..+.. +..+.+...+..+++.+
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAAL--DVNDHDQVFEVFAEFRD 77 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEc--CCCCHHHHHHHHHHHHH
Confidence 46888889999999999888889887666432111111 1122221 667766654 34444333333344433
No 492
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.63 E-value=2e+02 Score=22.72 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCC
Q psy14801 55 DRAAWRMIEDAETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYD 133 (404)
Q Consensus 55 ~R~a~~~l~~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~ 133 (404)
+-.+......+...+. +.||+.| ||++++.+|.+ +...+.+++.|.. ..-.++.-.+|..-+..+. ..
T Consensus 2 eaia~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~---~~ 70 (117)
T PF02887_consen 2 EAIARAAVELAEDLNA----KAIVVFTESGRTARLISKY--RPKVPIIAVTPNE--SVARQLSLYWGVYPVLIEE---FD 70 (117)
T ss_dssp HHHHHHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSH--HHHHHGGGSTTEEEEECSS---HS
T ss_pred HHHHHHHHHHHHhcCC----CEEEEECCCchHHHHHHhh--CCCCeEEEEcCcH--HHHhhhhcccceEEEEecc---cc
Q ss_pred -ChhhHHHHHHHHHHhCC
Q psy14801 134 -HPEGMIAGAHRIASQMK 150 (404)
Q Consensus 134 -~~~~~~~~a~~l~~~~~ 150 (404)
+.++..+.+.+...+.+
T Consensus 71 ~~~~~~~~~a~~~~~~~g 88 (117)
T PF02887_consen 71 KDTEELIAEALEYAKERG 88 (117)
T ss_dssp HSHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHcC
No 493
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=38.63 E-value=2.7e+02 Score=25.88 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCC
Q psy14801 86 GIGLAMVAAIKGYKMVVVMPM--KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNN 163 (404)
Q Consensus 86 g~a~A~~a~~~G~~~~iv~p~--~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~ 163 (404)
|..+|.-.+..|.++++-=|. -.++..-++++..|.+|+- |+.+ + ++ ++.... .+.|.|
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~-------dD~e-----a---a~-~~Ei~V---LFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVS-------DDAE-----A---AE-HGEIHV---LFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEec-------Cchh-----h---hh-cceEEE---Eecccc
Confidence 567788888999999998887 3456667788888887762 2221 1 11 212221 156766
Q ss_pred hhhHHhhHHHHHHHHhCCCcCEEEEccCCCh
Q psy14801 164 PLSHYETTAEEILRDTGGKVDMIVLGCGTGG 194 (404)
Q Consensus 164 si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~ 194 (404)
|+.-.+|.||++.+++ +.+|+..-+-.
T Consensus 94 --k~T~~Iarei~~hvpE--gAVicnTCT~s 120 (340)
T COG4007 94 --KATFGIAREILEHVPE--GAVICNTCTVS 120 (340)
T ss_pred --hhhHHHHHHHHhhCcC--CcEecccccCc
Confidence 5558899999999874 56666654444
No 494
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=38.53 E-value=1.2e+02 Score=28.75 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=36.9
Q ss_pred hCCCCCCCEEEecCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 68 AGVLKPGYTIVEPSSGNTGIGLAMVAAIKG-YKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 68 ~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G-~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
...+.++.+|+..++|..|.+++..|+.+| .++++ + ..+..|...++.+|++
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 344566677655567999999999999999 55444 3 3356777778888874
No 495
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=38.52 E-value=65 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801 169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220 (404)
Q Consensus 169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~ 220 (404)
..+..+|++.+...++..|++.|.|. ..+...+....+ ++++++.+..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~--G~lt~~L~~~~~--~v~~iE~d~~ 62 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGL--GALTEPLLKRAK--KVTAIEIDPR 62 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCC--CHHHHHHHHhCC--cEEEEECCHH
Confidence 44556788877655677899999988 666667766665 6999988764
No 496
>PRK07062 short chain dehydrogenase; Provisional
Probab=38.51 E-value=2.6e+02 Score=25.19 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=26.0
Q ss_pred CEEEecCCChHHHHHHHHHHHcCCeEEEEec
Q psy14801 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 105 (404)
..+|+..++--|.++|......|.+++++..
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 5678888899999999999999999777654
No 497
>PRK06207 aspartate aminotransferase; Provisional
Probab=38.49 E-value=3.9e+02 Score=26.20 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=31.0
Q ss_pred CEEEecCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801 75 YTIVEPSSGNTGIGLAMVAA-IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN 128 (404)
Q Consensus 75 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~ 128 (404)
..|+..+++..+..++..+- ..|=.+.+.-|. -..-...++.+|++++.++.
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~--y~~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARGDKVAIVQPD--YFANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCC--chhHHHHHHHcCCEEEEEec
Confidence 45666666777766555432 234333333332 23445678899999988875
No 498
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.28 E-value=2e+02 Score=26.48 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=36.4
Q ss_pred CCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q psy14801 69 GVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAK 122 (404)
Q Consensus 69 g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~ 122 (404)
+.+.++.+|+... +|..|.+++..|+.+|++.+.+.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 4455667765544 6899999999999999987666532 566677788874
No 499
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.26 E-value=2.3e+02 Score=25.69 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=21.8
Q ss_pred CEEEecC--CChHHHHHHHHHHHcCCeEEEEe
Q psy14801 75 YTIVEPS--SGNTGIGLAMVAAIKGYKMVVVM 104 (404)
Q Consensus 75 ~~vv~~s--sGN~g~a~A~~a~~~G~~~~iv~ 104 (404)
..+|+.. ++--|.++|....+.|.++++..
T Consensus 8 ~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 8 KILITGMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 3456663 45678888888888999887753
No 500
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=38.22 E-value=1.8e+02 Score=27.28 Aligned_cols=48 Identities=35% Similarity=0.441 Sum_probs=33.5
Q ss_pred HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q psy14801 67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGA 121 (404)
Q Consensus 67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga 121 (404)
....++++.+|+... +|..|.+++..|+.+|.+++++. +.+.++.+|+
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~ 204 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGA 204 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCC
Confidence 335566777766655 59999999999999999865542 1244455665
Done!