RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14801
(404 letters)
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 416 bits (1071), Expect = e-144
Identities = 178/317 (56%), Positives = 227/317 (71%), Gaps = 4/317 (1%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ +K + AKCEF NP GS+KDR A RMIEDAE +G LKPG TI+EP+
Sbjct: 10 GNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPT 69
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGIGLA+VAAIKGYK ++V+P KMS EKV +KALGA+I+RT ++D PE I
Sbjct: 70 SGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGV 129
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
A R+ ++ A +LDQ+ NP+NPL+HY+ T EIL GK+DM V G GTGGT +GI R
Sbjct: 130 AKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIAR 189
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
+KE P C++VGADP GSILAQP++LN + Y +VEGIGY F T LDR V+D+W
Sbjct: 190 YLKESNPKCRIVGADPEGSILAQPENLNKT--GRTPY-KVEGIGYDFIPTVLDRKVVDEW 246
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGVRNYL 320
K DK++F MARRLIK EGLLVGGSSG+A+ A +AA+ + Q VV+L D +RNY+
Sbjct: 247 IKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYM 306
Query: 321 TKFISDEWMIEKGFLDE 337
TKF++DEWM + GFLD+
Sbjct: 307 TKFLNDEWMKDNGFLDD 323
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 370 bits (953), Expect = e-128
Identities = 142/280 (50%), Positives = 182/280 (65%), Gaps = 9/280 (3%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AK EF NP GS+KDR A MIEDAE G+LKPG TI+EP+SGNTGIGLAMVAA KGY+ +
Sbjct: 21 AKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+VMP MS+EK ++ALGA++I T + D +G IA A +A++ NA L+QF NP
Sbjct: 81 IVMPETMSEEKRKLLRALGAEVILTPEAE-ADGMKGAIAKARELAAETPNAFWLNQFENP 139
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
NP +HYETTA EI GKVD V G GTGGT +G+ R +KEK P+ ++VG DP GS+
Sbjct: 140 ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSV 199
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
L +++EGIG F LDR++ID+ + D++ F MARRL + EG
Sbjct: 200 LFSGG--------PPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEG 251
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
LLVGGSSG A+ A + AK L P + V IL D YL+
Sbjct: 252 LLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291
Score = 41.7 bits (99), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
SG A+ A + AK L P + V IL D YL+
Sbjct: 258 SGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 336 bits (863), Expect = e-114
Identities = 131/282 (46%), Positives = 173/282 (61%), Gaps = 12/282 (4%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AK E NP GS+KDR A MIEDAE G+LKPG TIVE +SGNTGI LAMVAA KGY+++
Sbjct: 30 AKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLI 89
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRN 160
+VMP MS+E+ ++ALGA++I T +G I A +A+++ AV L+QF N
Sbjct: 90 IVMPETMSQERRKLLRALGAEVILTPGAPGNM--KGAIERAKELAAEIPGYAVWLNQFEN 147
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
P NP +HYETT EI + T GKVD V G GTGGT +G+ R +KE+ P+ ++V DP GS
Sbjct: 148 PANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+L ++EGIG F LD ++ID+ + D++ ARRL + E
Sbjct: 208 VLLSGGEGPH---------KIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREE 258
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 322
GLLVG SSG A+ A + AK L + V IL D YL+K
Sbjct: 259 GLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLSK 300
Score = 38.3 bits (90), Expect = 0.005
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 33/126 (26%)
Query: 286 GSSGTAMHVACQAAKSLRPDQRCV-------VILADGVRNYLTK-----FISDEWMIEKG 333
G+ GT VA + K P+ R V V+L+ G + + F+ + ++
Sbjct: 178 GTGGTITGVA-RYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLD-- 234
Query: 334 FLDEA-----EELEEMIH-------------SGTAMHVACQAAKSLRPDQRCVVILADGV 375
+DE EE SG A+ A + AK L + V IL D
Sbjct: 235 LIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSG 294
Query: 376 RNYLTK 381
YL+K
Sbjct: 295 ERYLSK 300
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 280 bits (719), Expect = 9e-93
Identities = 126/282 (44%), Positives = 174/282 (61%), Gaps = 14/282 (4%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AK E NP+GS+KDR A MIEDAE G+LKPG TI+E +SGNTGI LAMVAA KGYK++
Sbjct: 26 AKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLI 85
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+ MP MS E+ ++A GA++I T ++ +G I A +A++ V+LDQF NP
Sbjct: 86 LTMPETMSLERRKLLRAYGAELILTPAEEGM---KGAIDKAEELAAETNKYVMLDQFENP 142
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP-FGS 220
NP +HY+TT EI RDT G++D V G GTGGT +G+GR +KE+ P+ K+V +P
Sbjct: 143 ANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESP 202
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+L+ + ++++GIG F LD ++ID+ D+D ARRL + E
Sbjct: 203 VLSGGEPGP---------HKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREE 253
Query: 281 GLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLT 321
G+LVG SSG A+ A + AK L D+ V IL D YL+
Sbjct: 254 GILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLS 295
Score = 28.8 bits (65), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 345 IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLT 380
I SG A+ A + AK L D+ V IL D YL+
Sbjct: 259 ISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLS 295
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 274 bits (702), Expect = 3e-90
Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 18/284 (6%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E NP+GS+KDR A MI DAE G+LKPG TIVEP+SGNTGI LAMVAA +GYK++
Sbjct: 25 VKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLI 84
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA-VVLDQFRN 160
+ MP MS E+ +KA GA+++ T + +G IA A IA+ N+ +L QF N
Sbjct: 85 LTMPETMSIERRKLLKAYGAELVLTPGAEGM---KGAIAKAEEIAASTPNSYFMLQQFEN 141
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
P NP H +TT EI RDT GK+D V G GTGGT +G+G +KE+ P+ K+V +P S
Sbjct: 142 PANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAES 201
Query: 221 IL---AQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
+ +P ++++GIG F L+R+VID+ D++ ARRL
Sbjct: 202 PVLSGGKPGP-----------HKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLA 250
Query: 278 KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
EG+LVG SSG A+ A + AK PD+ VVIL YL+
Sbjct: 251 AEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLS 294
Score = 31.6 bits (72), Expect = 0.62
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 345 IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
I SG A+ A + AK PD+ VVIL YL+
Sbjct: 259 ISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLS 294
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 273 bits (700), Expect = 2e-89
Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 24/306 (7%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K EF+NP GS+KDRAA +I DAE G+LKPG TIVE ++GNTGIGLA+VAA +GYK V
Sbjct: 32 GKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTV 91
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM-----KNAVVLD 156
+VMP S+EK ++ALGA+++ Y +P + GA R+A ++ A+ +
Sbjct: 92 IVMPETQSQEKKDLLRALGAELVLVPA-APYANPNNYVKGAGRLAEELVASEPNGAIWAN 150
Query: 157 QFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
QF NP N +HYETT EI T GKVD V GTGGT +G+ R +KE P K+V AD
Sbjct: 151 QFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLAD 210
Query: 217 PFGSILAQPQSLNDVPENQISYNEV--------EGIGYSFAATTLDRNVIDQWGKCGDKD 268
P GS L + E+ EGIG L+ ID + D++
Sbjct: 211 PTGSALY----------SYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEE 260
Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 328
A RL++ EGL +GGSSG + A + A+ L P V IL D Y +K + ++
Sbjct: 261 ALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDF 320
Query: 329 MIEKGF 334
+ EKG
Sbjct: 321 LREKGL 326
Score = 36.8 bits (86), Expect = 0.014
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 324 ISDEWMIEKGF-LDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF 382
I DE + + L E E L SG + A + A+ L P V IL D Y +K
Sbjct: 256 IPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKL 315
Query: 383 ISDEWMIEKGF 393
+ +++ EKG
Sbjct: 316 FNPDFLREKGL 326
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 216 bits (554), Expect = 8e-69
Identities = 93/275 (33%), Positives = 123/275 (44%), Gaps = 50/275 (18%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K EF+NPTGS KDR A +I AE G P I+E + GNTGI LA AA G K
Sbjct: 19 LKLEFLNPTGSFKDRGALNLILLAEEEG-KLPKGVIIESTGGNTGIALAAAAARLGLKCT 77
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+VMP S EKV M+ALGA+++ D + IA A +A + A ++QF NP
Sbjct: 78 IVMPEGASPEKVAQMRALGAEVVLVPGD-----FDDAIALAKELAEEDPGAYYVNQFDNP 132
Query: 162 NNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
N T EIL GG K D +V+ G GG +GI R +KE P+ K++G +P
Sbjct: 133 ANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP--- 188
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ D++ R L + E
Sbjct: 189 ---------------------------------------EVVTVSDEEALEAIRLLAREE 209
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
G+LV SS A+ A + AK L + VVIL G
Sbjct: 210 GILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244
Score = 35.2 bits (82), Expect = 0.035
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE----L 341
G G +A +A K L P+ + + + + V +SDE +E A E +
Sbjct: 162 GGGGNIAGIA-RALKELLPNVKVIGVEPEVVT------VSDEEALE-AIRLLAREEGILV 213
Query: 342 EEMIHSGTAMHVACQAAKSLRPDQRCVVILADG 374
E S A+ A + AK L + VVIL G
Sbjct: 214 E--PSSAAALAAALKLAKKLGKGKTVVVILTGG 244
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 216 bits (553), Expect = 8e-68
Identities = 99/289 (34%), Positives = 149/289 (51%), Gaps = 13/289 (4%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AK E NP GS+KDR A ++E A G + PG TI+E SSGN GI LAM+ A KG + +
Sbjct: 26 AKLEGFNPGGSIKDRPALYILEAAIKRGRITPGTTIIESSSGNLGIALAMICAYKGLRFI 85
Query: 102 VVMPMKMSKEKVYTMKALGAKIIR-TQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
V+ +S + + ++A GA++ + T+ D++ + IA + + + +A +Q+ N
Sbjct: 86 CVVDPNISPQNLKLLRAYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYAN 145
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
P+NP +HY T EI R +D + +G T GT G R+++E+ P+ K++ D GS
Sbjct: 146 PDNPRAHYHGTGREIARAF-PPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS 204
Query: 221 -ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS 279
I P +P G+G S LD ++ID + DT RRL +
Sbjct: 205 VIFGGPPGRRHIP----------GLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARR 254
Query: 280 EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 328
EG+L GGSSGT + + + P V IL D YL +DEW
Sbjct: 255 EGILAGGSSGTVVAAIKRLLPRIPPGSTVVAILPDRGERYLDTVYNDEW 303
Score = 29.5 bits (67), Expect = 3.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 387
SGT + + + P V IL D YL +DEW
Sbjct: 263 SGTVVAAIKRLLPRIPPGSTVVAILPDRGERYLDTVYNDEW 303
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 215 bits (549), Expect = 3e-67
Identities = 126/313 (40%), Positives = 170/313 (54%), Gaps = 48/313 (15%)
Query: 22 GKVPL-----LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
G PL LP + +IL AK E NP GS+KDR A MI AE G +KPG T
Sbjct: 11 GNTPLVKLQRLPPDRGNTIL-----AKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT 65
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
++E +SGNTGI LAM+AAIKGY+M ++MP MS+E+ M+A GA++I + +
Sbjct: 66 LIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKE------Q 119
Query: 137 GMIAGAHRIASQMKNA---VVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
GM GA +A QM+ VLDQF NP+NPL+HYETT EI R T G++ V GT
Sbjct: 120 GM-EGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTT 178
Query: 194 GTASGIGRKIKEKCPSCKLVGADPF-GS----ILAQPQSLNDVPENQISYNEVEGIGYSF 248
GT G+ R +KE+ P+ ++VG P GS I P+ Y + I F
Sbjct: 179 GTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPE----------EY--LPKI---F 223
Query: 249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRC 308
A+ +DR V+D ++ RRL + EG+ G SSG A+ A + A+ P+
Sbjct: 224 DASRVDR-VLD----VSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN-PNAVI 277
Query: 309 VVILAD-GVRNYL 320
V I+ D G R YL
Sbjct: 278 VAIICDRGDR-YL 289
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 208 bits (530), Expect = 1e-64
Identities = 93/298 (31%), Positives = 138/298 (46%), Gaps = 20/298 (6%)
Query: 24 VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG 83
V L + L K E +NPTGS KDR A ++ A + G T+VE SSG
Sbjct: 11 VRLPSPLLGARVYL-----KLESLNPTGSFKDRGAAYLLLRAL-----ERGATVVEASSG 60
Query: 84 NTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH 143
NTG LA AA G K+ +V+P S K+ M+ALGA++I ++ YD + A
Sbjct: 61 NTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDALELAEEAA 120
Query: 144 RIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRK 202
+ + + L Q+ NP N ++ Y+T EIL G G D +V+ G GG A+GI R
Sbjct: 121 ELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGIARG 179
Query: 203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF-----AATTLDRNV 257
+KE P +++G +P G+ +SL + G+G A L
Sbjct: 180 LKELGPGIRVIGVEPEGAPAL-ARSLEAGRRVPKPT-TIAGLGPGIPLDGELALELIDEY 237
Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILAD 314
+ D++ R L + EG+LV SS A+ A + A+ +R VV+L
Sbjct: 238 VGDVYAVSDEEALEAIRLLARREGILVEPSSAAALAAALRLAELELGKGKRVVVVLTG 295
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 204 bits (520), Expect = 9e-63
Identities = 115/293 (39%), Positives = 165/293 (56%), Gaps = 14/293 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
GK PL+ + + AK E M P S+KDR + MI DAE G++KPG ++ +EP
Sbjct: 14 GKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEP 73
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGNTGIGLA +AA KGYK+++ MP MS E+ + A GA+++ T K +G +
Sbjct: 74 TSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM---KGAVQ 130
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
A I ++ N+ +L QF NP NP HYETT EI + TGGKVD V G GTGGT +G G
Sbjct: 131 KAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAG 190
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
+ +KE+ P KL G +P S + + + ++++GIG F LD +++D+
Sbjct: 191 KYLKEQNPDIKLYGVEPVESAV--------LSGGKPGPHKIQGIGAGFIPGVLDVDLLDE 242
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILA 313
+ + A+ L EGLLVG SSG A A + AK RP+ +I+
Sbjct: 243 VVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAK--RPENAGKLIVV 293
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 198 bits (504), Expect = 7e-60
Identities = 120/328 (36%), Positives = 173/328 (52%), Gaps = 29/328 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEP 80
GK PL+ +K AK E PT S+KDR A MIEDAE ++ PG T ++EP
Sbjct: 58 GKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEP 117
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
+SGN GI LA +AA+KGYKM++ MP S E+ TM+A GA+++ T D +GM
Sbjct: 118 TSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT------DPTKGMGG 171
Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
+ A+ + +A +L QF NP N H+ETT EI DT G+VD+ V+G G+GGT S
Sbjct: 172 TVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVS 231
Query: 198 GIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
G+G+ +K K P+ K+ G +P A+ LN + + + G G F LD +V
Sbjct: 232 GVGKYLKSKNPNVKIYGVEP-----AESNVLNG---GKPGPHHITGNGVGFKPDILDMDV 283
Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQR---CVVILAD 314
+++ + +D MAR L EGL+VG SSG A + AK P+ + V +
Sbjct: 284 MEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAK--MPENKGKLIVTVHPS 341
Query: 315 GVRNYLTKFISDEWMIEKGFLDEAEELE 342
YL+ + E EAE ++
Sbjct: 342 FGERYLSSVLFQE------LRKEAENMQ 363
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 194 bits (495), Expect = 4e-59
Identities = 112/284 (39%), Positives = 160/284 (56%), Gaps = 17/284 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKGYKM 100
AK E M P S+KDR A+ MI+DAE G++ PG T++E ++GNTGIGLA + A +GYK+
Sbjct: 36 AKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKV 95
Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
++VMP MS E+ ++ALGA++ T +GM+ A I S+ + QF N
Sbjct: 96 ILVMPSTMSLERRIILRALGAEVHLTDQSIGL---KGMLEKAEEILSKTPGGYIPQQFEN 152
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
P NP HY TT EI RD+ GKVD++V G GTGGTA+G+G+ +KEK K+ +P S
Sbjct: 153 PANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
+ + Q + ++GIG LD ++D+ + ++ A+ L E
Sbjct: 213 AV--------LSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKE 264
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLT 321
GLLVG SSG A A + AK RP+ + VVI G YL+
Sbjct: 265 GLLVGISSGAAAAAALKVAK--RPENAGKLIVVIFPSGGERYLS 306
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 193 bits (491), Expect = 8e-59
Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 34/307 (11%)
Query: 22 GKVPLLPQSKQGSILLPTTD----AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI 77
G PL+ + + P K E NP GS+KDR A MI +AE G +KPG +
Sbjct: 7 GNTPLVRLQR----MGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVL 62
Query: 78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG 137
+E +SGNTGI LAM+AA+KGY+M ++MP MS+E+ M+A GA++I EG
Sbjct: 63 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILV------TKEEG 116
Query: 138 MIAGAHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGG 194
M GA +A ++ N +LDQF NP+NP +HY +T EI + TGG++ V GT G
Sbjct: 117 M-EGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTG 175
Query: 195 TASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD 254
T G+ R +KE+ P ++VG P + S+ + Y + GI F A+ +D
Sbjct: 176 TIMGVSRFLKEQNPPVQIVGLQP-----EEGSSIPGIRRWPTEY--LPGI---FDASLVD 225
Query: 255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILAD 314
R V+D +D R L EG+ G SSG A+ A + A+ L PD V I+ D
Sbjct: 226 R-VLD----IHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICD 279
Query: 315 GVRNYLT 321
YL+
Sbjct: 280 RGDRYLS 286
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 188 bits (479), Expect = 1e-55
Identities = 111/285 (38%), Positives = 161/285 (56%), Gaps = 14/285 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
GK P++ + + AK E M P S+KDR + M+ DAE G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGNTGIGLA +AA +GY++++ MP MS E+ +KA GA+++ T K G +
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM---TGAVQ 238
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
A I +A +L QF NP NP HYETT EI DT GKVD+ V G GTGGT +G+G
Sbjct: 239 KAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVG 298
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
R IKEK P +++G +P S + + + ++++GIG F LD+ ++D+
Sbjct: 299 RFIKEKNPKTQVIGVEPTESDI--------LSGGKPGPHKIQGIGAGFIPKNLDQKIMDE 350
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD 305
++ A++L EGL+VG SSG A A + AK RP+
Sbjct: 351 VIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPE 393
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 146 bits (369), Expect = 9e-40
Identities = 114/353 (32%), Positives = 163/353 (46%), Gaps = 59/353 (16%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
KCEF+NP GS+KDR A ++IE+A +G L PG + E S+G+T I LA VA G K V
Sbjct: 73 KCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHV 132
Query: 103 VMPMKMSKEKVYTMKALGAKI--IRTQNDKSYDH----------PEGMIAGAHRIASQMK 150
V+P ++ EK ++ALGA + +R + DH +A R S+
Sbjct: 133 VIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSET- 191
Query: 151 NAVVL---------------------------DQFRNPNNPLSHYETTAEEILRDTGGKV 183
+ + L DQF N N +HYE T EI T G +
Sbjct: 192 DGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNL 251
Query: 184 DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL--------------AQPQSLN 229
D V GTGGT +G+ R ++EK P+ K DP GS L A+ + L
Sbjct: 252 DAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLK 311
Query: 230 DVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289
+ P + I+ EGIG + +D + DK+ M+R L+K++GL VG SS
Sbjct: 312 N-PFDTIT----EGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSA 366
Query: 290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELE 342
A + A+SL P V IL D +L+KF +++ + G A LE
Sbjct: 367 MNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTPTATGLE 419
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 92.3 bits (230), Expect = 9e-21
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 9/196 (4%)
Query: 25 PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGN 84
PL L K E + P GS K R A+ + G ++ S+GN
Sbjct: 27 PLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG--VIAASAGN 84
Query: 85 TGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR 144
G+A A G K +VMP K KV + GA++I ++D A
Sbjct: 85 HAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILH--GDNFDDAYAA---AEE 139
Query: 145 IASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK 204
+A + + + F +P + ++ T A EIL D + + G GG SGI +K
Sbjct: 140 LAEE-EGLTFVPPFDDP-DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALK 197
Query: 205 EKCPSCKLVGADPFGS 220
P K++G +P G+
Sbjct: 198 ALSPEIKVIGVEPEGA 213
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 84.1 bits (209), Expect = 4e-18
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
KCE + TGS K R A+ + E+ GV V S+GN G+A A + G
Sbjct: 37 KCENLQKTGSFKIRGAYNKLLSLSEEERAKGV-------VAASAGNHAQGVAYAAKLLGI 89
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
+VMP KV +A GA+++ + +D E A A +A + +
Sbjct: 90 PATIVMPETAPAAKVDATRAYGAEVVLY--GEDFDEAE---AKARELAEEEGLTFI---- 140
Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
+P + T EIL +D + + G GG +GI +K P+ K+
Sbjct: 141 ----HPFDDPDVIAGQGTIGLEILEQV-PDLDAVFVPVGGGGLIAGIATAVKALSPNTKV 195
Query: 213 VGADPFGS 220
+G +P G+
Sbjct: 196 IGVEPEGA 203
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 82.0 bits (203), Expect = 5e-17
Identities = 77/330 (23%), Positives = 123/330 (37%), Gaps = 52/330 (15%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K NPTGS KDR ++ A+ G TI+ SSGNTG A AA G K+ V
Sbjct: 99 KELGHNPTGSFKDRGMTVLVSLAKELGAK----TILCASSGNTGASAAAYAARAGLKVFV 154
Query: 103 VMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM--KNAVVLDQFR 159
+ P K+S K+ M LGA +I + +D A + + + ++
Sbjct: 155 LYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDD-------AQELVKEAANREGLL----- 200
Query: 160 NPNNPLSHY-----ETTAEEILRDTGGKV-DMIVLGCGTGGTASGI------GRKIK--E 205
+ N ++ Y +T A EI G K D +V+ G GG I G I +
Sbjct: 201 SAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKID 260
Query: 206 KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCG 265
K P+ V A+ F + + + PE + IG + + G
Sbjct: 261 KAPNMNGVQAEGFSPGVYAWKEGRETPE---TIAPAMDIGNPSNWERALFALRESGGLAV 317
Query: 266 ---DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL--------AD 314
D++ + L + EG+L+ S A+ + + + VV++ D
Sbjct: 318 AVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPD 377
Query: 315 GVRNYLTKFISDEWMIEKGFLDEAEELEEM 344
V + E E +LE +
Sbjct: 378 TVEEAPAELAEIP---ELPLRVEDADLEAL 404
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 69.8 bits (171), Expect = 5e-13
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + TGS K R A + ED GV V S+GN G+A A G
Sbjct: 20 KLENLQKTGSFKIRGALNKIANLSEDQRQRGV-------VAASAGNHAQGVAYAAKKFGI 72
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
K V+VMP KV K+ GA++I +D YD A A +A + + V + F
Sbjct: 73 KAVIVMPESAPPSKVKATKSYGAEVILHGDD--YDEAY---AFATSLAEE-EGRVFVHPF 126
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
+ ++ T EI+ D VD +++ G GG SG+ K+ P+ K++G
Sbjct: 127 DDE-FVMAGQGTIGLEIMED-IPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIG 180
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 68.0 bits (167), Expect = 1e-12
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 21 PGKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G PL+ + G L K E +NPTGS KDR + A+ GV +
Sbjct: 20 EGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----KAVAC 75
Query: 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
S+GNT LA AA G K VV +P + K+ A GA ++ + + +D
Sbjct: 76 ASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDD----- 128
Query: 140 AGAHRIASQM--KNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKV-DMIVLGCGTGGTA 196
A R+ ++ +N + L NP L +T A EI G +V D +V+ G GG
Sbjct: 129 --ALRLVRELAEENWIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNI 185
Query: 197 SGIGRKIKE 205
+ I + KE
Sbjct: 186 TAIWKGFKE 194
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 63.9 bits (156), Expect = 3e-11
Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 40/302 (13%)
Query: 25 PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEP 80
PLL Q + L KCE + TGS K R A + E GV +
Sbjct: 27 PLLSQHTGCEVYL-----KCEHLQHTGSFKFRGASNKLRLLNEAQRQQGV-------ITA 74
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
SSGN G G+A+ A + G + V P + S K+ ++ALGA++ D
Sbjct: 75 SSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD-----ALNAEL 129
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPL---SHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
A R A Q + +P N + T E++ +D + + G GG S
Sbjct: 130 AARRAAEQQGKVYI-----SPYNDPQVIAGQGTIGMELVEQQ-PDLDAVFVAVGGGGLIS 183
Query: 198 GIGRKIKEKCPSCKLVGADPFGSILAQPQSLN-----DVPENQISYNEVEGIGYSFAATT 252
GI +K P +++G P S SL +V E + G G A T
Sbjct: 184 GIATYLKTLSPKTEIIGCWPANSPSLY-TSLEAGEIVEVAEQPTLSDGTAG-GVEPGAIT 241
Query: 253 LD--RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVV 310
+ +IDQ +++ R + +++ L+ G++G A+ A + A + ++ V
Sbjct: 242 FPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ-GKKVAV 300
Query: 311 IL 312
+L
Sbjct: 301 VL 302
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 62.1 bits (151), Expect = 2e-10
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + P S K R A+ R+ + GV + S+GN G+A+ AA G
Sbjct: 57 KREDLQPVFSFKIRGAYNKMARLPAEQLARGV-------ITASAGNHAQGVALAAARLGV 109
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA-SQMKNAVVLDQ 157
K V+VMP + KV ++A G +++ + +S+ A AH + ++ + +
Sbjct: 110 KAVIVMPRTTPQLKVDGVRAHGGEVV--LHGESFPD-----ALAHALKLAEEEGLTFVPP 162
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
F +P+ ++ T A EILR G +D I + G GG +GI +K P K++G +P
Sbjct: 163 FDDPD-VIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 61.8 bits (150), Expect = 2e-10
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E TGS K R A ++ ED GV+ S+GN G+A A+I G
Sbjct: 45 KLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITA-------SAGNHAQGVAYAASINGI 97
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM---KNAVVL 155
+VMP +KV ++A GA +I T D YD AHR A ++ +N +
Sbjct: 98 DAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDE-------AHRYADKIAMDENRTFI 148
Query: 156 DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
+ F N +S T EI+ D +D I++ G GG SGI K P+ K++G
Sbjct: 149 EAF-NDRWVISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206
Query: 216 D 216
+
Sbjct: 207 E 207
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 60.5 bits (147), Expect = 6e-10
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + P S K R A+ + + + GV + S+GN G+A AA G
Sbjct: 37 KREDLQPVFSFKLRGAYNKMAQLSPEQKARGV-------IAASAGNHAQGVAFSAARLGL 89
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA-SQMKNAVVLDQ 157
K ++VMP KV ++ G +++ + ++D A A I SQ K +
Sbjct: 90 KALIVMPETTPDIKVDAVRGFGGEVV--LHGANFD-----DAKAKAIELSQEKGLTFIHP 142
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
F +P ++ T A EILR +D + + G GG A+G+ IK+ P K++G +P
Sbjct: 143 FDDPL-VIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEP 201
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 59.7 bits (145), Expect = 9e-10
Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 62/213 (29%)
Query: 25 PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEP 80
P L + + L K E + TG+ K R A+ I E+ + GV +
Sbjct: 27 PFLSKISGAEVYL-----KKENLQITGAYKIRGAYNKIANLSEEQKQHGV-------IAA 74
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII---------------- 124
S+GN G+A+ A G K V+VMP KV KALGA++I
Sbjct: 75 SAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEY 134
Query: 125 RTQNDKSYDHP---EGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG 181
+N+ ++ HP E ++AG IA +M LD+ +
Sbjct: 135 AKENNLTFIHPFEDEEVMAGQGTIALEM-----LDEISD--------------------- 168
Query: 182 KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
+DM+V+ G GG SGI K+ P+ K++G
Sbjct: 169 -LDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 59.1 bits (143), Expect = 1e-09
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E NPTGS +DR A + G+ + S GN +A +A G + V
Sbjct: 85 KDETRNPTGSFRDRLATVAVSYGLPYA--ANGFIVA--SDGNAAASVAAYSARAGKEAFV 140
Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQND 129
V+P K+ K K+ M A GAKIIR
Sbjct: 141 VVPRKVDKGKLIQMIAFGAKIIRYGES 167
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 58.2 bits (141), Expect = 2e-09
Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 45/192 (23%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E + TG+ K R + + + G L IV S+GN G +A + + G K +
Sbjct: 43 KVESLQKTGAFKVRGVLNHLLELKEQGKLPD--KIVAYSTGNHGQAVAYASKLFGIKTRI 100
Query: 103 VMPMKMSKEKVYTMKALGAKIIRT--------------QNDKSYDHP---EGMIAGAHRI 145
+P+ SK K G ++I T + Y HP + IAGA
Sbjct: 101 YLPLNTSKVKQQAALYYGGEVILTNTRQEAEEKAKEDEEQGFYYIHPSDSDSTIAGAG-- 158
Query: 146 ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE 205
T E L+ G D I CG GG SG +
Sbjct: 159 ------------------------TLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKEL 194
Query: 206 KCPSCKLVGADP 217
P+ L+G++P
Sbjct: 195 ISPTSLLIGSEP 206
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 58.6 bits (143), Expect = 2e-09
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
KCE + TGS K R A+ + E+ GV V S+GN G+A A++ G
Sbjct: 42 KCENLQRTGSFKIRGAYNKIASLSEEERARGV-------VAASAGNHAQGVAYAASLLGI 94
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
K +VMP KV ++ GA+++ + YD E + A +A + A +
Sbjct: 95 KATIVMPETAPLSKVKATRSYGAEVVLHGDV--YD--EALAK-AQELAEE-TGATFV--- 145
Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
+P + T EIL D VD +V+ G GG SG+ +K P ++
Sbjct: 146 ----HPFDDPDVIAGQGTIGLEILEDLPD-VDTVVVPIGGGGLISGVATAVKALRPEVRV 200
Query: 213 VGADPFGSILAQPQSL 228
+G G+ A P+SL
Sbjct: 201 IGVQAEGAP-AMPESL 215
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 57.4 bits (139), Expect = 3e-09
Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 23/201 (11%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
F NPT S KDR + A G T++ S+GNTG A A G K+V
Sbjct: 43 VLELFHNPTLSFKDRGMAVALTKALELGND----TVLCASTGNTGAAAAAYAGKAGVKVV 98
Query: 102 VVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
++ P K+S K+ A+++ + +D A R+ Q+ +
Sbjct: 99 ILYPAGKISLGKLAQALGYNAEVVAIDGN--FDD-------AQRLVKQLFGDKEALGLNS 149
Query: 161 PNNPLSHYE---TTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
N+ E T A E + G + D +V+ G I + KEK K G D
Sbjct: 150 VNSIPYRLEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK----KEGGLD 205
Query: 217 PFGSILA-QPQSLNDVPENQI 236
Q + D+ +
Sbjct: 206 SLPVKRGIQAEGAADIVRAFL 226
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 57.4 bits (139), Expect = 4e-09
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 21 PGKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
PG PLL K L L K E NPTG+ KDR A + A ++ GY I
Sbjct: 13 PGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRA-----MRLGYSGIT 67
Query: 79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
+ GN G +A A + G K V+ +P S +V M+ GA+II D Y E
Sbjct: 68 VGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYV--DGKY---EEA 122
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSH-----YETTAEEILRDTGGKVDMIVLGCGTG 193
+ + + A + + D NP + S Y A EI G D + + G G
Sbjct: 123 VERSRKFAKENG---IYDA--NPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNG 177
Query: 194 GTASGI 199
T +GI
Sbjct: 178 TTLAGI 183
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 57.0 bits (138), Expect = 5e-09
Identities = 49/199 (24%), Positives = 71/199 (35%), Gaps = 59/199 (29%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
KCE G+ K R A+ + + AGV V SSGN +A+ A + G
Sbjct: 44 KCENFQRMGAFKFRGAYNALSQFSPEQRRAGV-------VTFSSGNHAQAIALSARLLGI 96
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKII---RTQNDK-----------------SYDHPEGM 138
+VMP KV + G +++ R D+ YDHP
Sbjct: 97 PATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHP--- 153
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
H IA Q T A+E+ + G +D + + G GG SG
Sbjct: 154 ----HVIAGQ--------------------GTAAKELFEEVG-PLDALFVCLGGGGLLSG 188
Query: 199 IGRKIKEKCPSCKLVGADP 217
+ P CK+ G +P
Sbjct: 189 CALAARALSPGCKVYGVEP 207
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 55.6 bits (134), Expect = 2e-08
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 24/213 (11%)
Query: 25 PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGN 84
P+ P K+ + K +++ PTGS KDR + + + G+ + +V SSGN
Sbjct: 63 PITPTVKRSIKVY----FKLDYLQPTGSFKDRGTYVTVAKLKEEGINE----VVIDSSGN 114
Query: 85 TGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR 144
+ LA+ + +G K+ V + SKEK+ + LGA++ + D+ H E +
Sbjct: 115 AALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAV------ 168
Query: 145 IASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK 204
S+ N + + NP L +T A EI G D + G+G GI + K
Sbjct: 169 KFSKRNNIPYVSHWLNPYF-LEGTKTIAYEIYEQI-GVPDYAFVPVGSGTLFLGIWKGFK 226
Query: 205 E--------KCPSCKLVGADPFGSILAQPQSLN 229
E K P V A+ + S+ + +S N
Sbjct: 227 ELHEMGEISKMPKLVAVQAEGYESLCKRSKSEN 259
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 54.4 bits (131), Expect = 3e-08
Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 36/290 (12%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K +F+NPTGS KDR + +I G+ I E SSGN G +A A G ++ +
Sbjct: 70 KLDFLNPTGSYKDRGSVTLISYLAEKGI----KQISEDSSGNAGASIAAYGAAAGIEVKI 125
Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
+P S K+ +++ GA+++R + + E + A + V+ QFR+
Sbjct: 126 FVPETASGGKLKQIESYGAEVVRVRGSR-----EDVAKAAENSGYYYASHVLQPQFRDG- 179
Query: 163 NPLSHYETTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
T A EI +D K+ + + + G G+ K S + I
Sbjct: 180 -----IRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVI---SEMPKI 231
Query: 222 LA-QPQSLNDVPE--NQISY---NEVEGIGYSFAATT---LDR--NVIDQWGKCG--DKD 268
+A Q + ++ + ISY ++V I + +T LD + ++G+C +
Sbjct: 232 VAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDN 291
Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
+ A + + +GLLV SS T A K + +V+ G++
Sbjct: 292 EIVEAWKELAKKGLLVEYSSATVY----AAYKKYSVNDSVLVLTGSGLKV 337
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 53.6 bits (129), Expect = 5e-08
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 30/195 (15%)
Query: 27 LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIE---DAETA-GVLKPGYTIVEPSS 82
L + +G I L K E M TGS K R A+ + DAE GV V S+
Sbjct: 36 LSERCKGEIFL-----KLENMQRTGSFKIRGAFNKLSSLTDAEKRKGV-------VACSA 83
Query: 83 GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII---RTQNDKSYDHPEGMI 139
GN G+A+ A+ G VVMP K KV GA+++ ND I
Sbjct: 84 GNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDT--------I 135
Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
A I + + + + +P ++ T EIL D VD +++ G GG +GI
Sbjct: 136 AKVEEIV-EEEGRTFIPPYDDP-KVIAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGI 192
Query: 200 GRKIKEKCPSCKLVG 214
+K P+ ++G
Sbjct: 193 AVALKSINPTIHIIG 207
>gnl|CDD|215524 PLN02970, PLN02970, serine racemase.
Length = 328
Score = 53.5 bits (129), Expect = 6e-08
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 19/182 (10%)
Query: 43 KCEFMNPTGSLKDRAAWRMIE--DAETA--GVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
KCE G+ K R A I + A GV V SSGN LA+ A ++G
Sbjct: 47 KCECFQKGGAFKFRGACNAIFSLSDDQAEKGV-------VTHSSGNHAAALALAAKLRGI 99
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
+V+P KV + G I + E A A R+ Q AV++ +
Sbjct: 100 PAYIVVPKNAPACKVDAVIRYGGIITWCEPTV-----ESREAVAARVQ-QETGAVLIHPY 153
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
+ +S T A E L +D+I++ GG SGI K PS K++ A+P
Sbjct: 154 NDGR-VISGQGTIALEFLEQVPE-LDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPK 211
Query: 219 GS 220
G+
Sbjct: 212 GA 213
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 54.2 bits (130), Expect = 7e-08
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E + P S K R A+ M+ L G ++ S+GN G+A+ A G V+
Sbjct: 129 KREDLQPVFSFKLRGAYNMMAKL-PKEQLDKG--VICSSAGNHAQGVALSAQRLGCDAVI 185
Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH-RIASQMKNAVVLDQFRNP 161
MP+ + K +++ LGA ++ + SYD A A+ + + + + F +P
Sbjct: 186 AMPVTTPEIKWQSVERLGATVVLVGD--SYDE-----AQAYAKQRALEEGRTFIPPFDHP 238
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
+ ++ T EI+R G + I + G GG +GI +K P K++G +P
Sbjct: 239 D-VIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 53.6 bits (129), Expect = 9e-08
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 17/183 (9%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E + P S K R A+ ++ A L G +V S+GN G A G V
Sbjct: 36 KREDLQPVRSYKIRGAYNFLKQLSDAQ-LAKG--VVCASAGNHAQGFAYACRHLGVHGTV 92
Query: 103 VMPMKMSKEKVYTMKALGA---KIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
MP K+K+ +K G +II + D+ A A + +
Sbjct: 93 FMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCA-------AAARE-HVEDHGGTFIPP 144
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
F +P + T A EIL K D +V+ G GG SG+ + P K++G +P
Sbjct: 145 FDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203
Query: 218 FGS 220
G+
Sbjct: 204 EGA 206
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 53.0 bits (128), Expect = 1e-07
Identities = 59/174 (33%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKP---GYTIVE-PSSGNTGIGLAMVAAIKG 97
K E NPTGS KDR M T GV K G V S+GNT LA AA G
Sbjct: 87 VKHEGANPTGSFKDRG---M-----TVGVTKALELGVKTVACASTGNTSASLAAYAARAG 138
Query: 98 YKMVVVMPM-KMSKEKVYTMKAL--GAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154
K V++P K++ K+ +AL GAK++ + D ++D M+ +A + K +
Sbjct: 139 LKCYVLLPAGKVALGKL--AQALLHGAKVL--EVDGNFDDALDMV---VELAKEGK-IYL 190
Query: 155 LDQFRNPNNP--LSHYETTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKE 205
L+ NP L +T EI G +V D +VL G G S I + KE
Sbjct: 191 LNSI----NPFRLEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKE 240
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 52.0 bits (124), Expect = 2e-07
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKP 73
+P G PL+P L T K E +NPTGS KDR + A+ G
Sbjct: 19 TPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG---- 74
Query: 74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSY 132
++ S+GNT A A G K +V+P K++ K+ GA II Q + +
Sbjct: 75 AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--F 132
Query: 133 DHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGT 192
D + +A AV L NP L +T A EI G D++ + G
Sbjct: 133 DEA---LKSVRELAE--TEAVTLVNSVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGN 186
Query: 193 GGTASGIGRKIKE 205
G S + KE
Sbjct: 187 AGNISAYWKGFKE 199
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 50.3 bits (121), Expect = 6e-07
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAW-RMIE-DAETAGVLKPGYTIVEP 80
+ P+L G P K E + TGS K R A+ R++ AGV V
Sbjct: 23 RTPVLEADGAGFGPAPVW-LKLEHLQHTGSFKARGAFNRLLAAPVPAAGV-------VAA 74
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
S GN G+ +A AA G V +P KV ++ALGA+++ Y + + A
Sbjct: 75 SGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EY--ADALEA 130
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
A A++ + P L+ T EI G VD +++ G GG +GI
Sbjct: 131 AQAFAAE--TGALLCHAYDQPEV-LAGAGTLGLEIEEQAPG-VDTVLVAVGGGGLIAGI 185
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 50.5 bits (122), Expect = 9e-07
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 58/202 (28%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + P S K R A+ + E+ GV + S+GN G+A+ AA G
Sbjct: 40 KREDLQPVFSFKLRGAYNKMAQLTEEQLARGV-------ITASAGNHAQGVALSAARLGI 92
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKI--------------IRTQNDKS------YDHPEGM 138
K V+VMP+ KV ++A G ++ I ++ +D P+ +
Sbjct: 93 KAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPD-V 151
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
IAG Q T A EIL+ +D + + G GG +G
Sbjct: 152 IAG------Q--------------------GTIAMEILQQHPHPLDAVFVPVGGGGLIAG 185
Query: 199 IGRKIKEKCPSCKLVGADPFGS 220
+ IK+ P K++G +P S
Sbjct: 186 VAAYIKQLRPEIKVIGVEPEDS 207
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 49.3 bits (117), Expect = 2e-06
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 7 YSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAE 66
Y N+P + G PL+P L K E NPTGS KDR + A+
Sbjct: 12 YLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAK 71
Query: 67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIR 125
G I+ S+GNT A AA G K ++V+P K++ K+ A GA+II
Sbjct: 72 EEG----SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIIS 127
Query: 126 TQND 129
+ +
Sbjct: 128 IEGN 131
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 48.5 bits (116), Expect = 4e-06
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 22 GKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEP 80
G PLLP + G L + K E +NPTGS K R + A+ GV + P
Sbjct: 78 GMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKH----LAMP 133
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
++GN G A AA G + + MP + GA++ +G+I+
Sbjct: 134 TNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLV---------DGLIS 184
Query: 141 GAHRIASQMKNAV 153
A +I ++
Sbjct: 185 DAGKIVAEAVAEY 197
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 47.9 bits (115), Expect = 6e-06
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + P S K R A+ I ++ AGV V S+GN G+A G
Sbjct: 45 KREDLQPVRSYKLRGAYNAISQLSDEELAAGV-------VCASAGNHAQGVAYACRHLGI 97
Query: 99 KMVVVMPMKMSKEKVYTMKALGAK---IIRTQN--DKSYDHPEGMIAGAHRIASQMKNAV 153
V+ MP+ ++K+ ++ G + I+ + D S A A A + A
Sbjct: 98 PGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSA-------AAAQEYAEE-TGAT 149
Query: 154 VLDQFRNPNNPLSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCK 211
+ F +P+ ++ T A EIL G D + + G GG SG+ +KE+ P K
Sbjct: 150 FIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTK 208
Query: 212 LVGADPFG 219
++G +P G
Sbjct: 209 IIGVEPAG 216
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 44.1 bits (104), Expect = 6e-05
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 43 KCEFMNPTGSLKDRAAWRMI---EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
K E TGS K R A + D + A +V S+GN G LA AA +G +
Sbjct: 39 KLEHRQTTGSFKLRGATNAVLSLSDTQRAA------GVVAASTGNHGRALAYAAAEEGVR 92
Query: 100 MVVVMPMKMSKEKVYTMKALGA--KIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
+ M + + KV ++ LGA +I+ D + + E ++A + +L
Sbjct: 93 ATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVAD--------RGLTMLPP 144
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
F +P + ++ T E++ + +++ GG ASG+ +K P +++G
Sbjct: 145 FDHP-DIVAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIG 199
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 43.4 bits (103), Expect = 1e-04
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E + PTGS K R A + GV V S+GN G LA A G
Sbjct: 39 KLETLQPTGSFKLRGATNALLSLSAQERARGV-------VTASTGNHGRALAYAARALGI 91
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
+ + M + KV ++ALGA++ S D + A R+ + + ++ F
Sbjct: 92 RATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQ---AEVERLVRE-EGLTMVPPF 145
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
+P ++ T EIL V +++ GG ASG+ +K P+ +++G
Sbjct: 146 DDP-RIIAGQGTIGLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 42.9 bits (102), Expect = 2e-04
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 83 GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYD 133
GN G G+A A G K V+ MP S+E+V ++ALGA+ I T D +YD
Sbjct: 125 GNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIIT--DGNYD 173
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 39.6 bits (93), Expect = 0.002
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E PTG+ K R + G G ++ + GN G +A A G +
Sbjct: 41 KHENHTPTGAFKVRGGLVYFDRLARRGPRVRG--VISATRGNHGQSVAFAARRHGLAATI 98
Query: 103 VMPMKMSKEKVYTMKALGAKII 124
V+P S EK M+ALGA++I
Sbjct: 99 VVPHGNSVEKNAAMRALGAELI 120
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase) [Energy metabolism, Other].
Length = 376
Score = 39.5 bits (92), Expect = 0.003
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHP 135
T + GN G G+A A G K VV MP ++E+V + LGA+ T D +YD
Sbjct: 96 TFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTIT--DMNYDDT 153
Query: 136 EGMIAGAHRIASQMKNAVVLDQF-----RNPNNPLSHYETTAEEI---LRDTGGKV-DMI 186
+ A ++A Q VV D + P + Y T A+E LR+ G +
Sbjct: 154 VRL---AMQMAQQHGWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHV 210
Query: 187 VLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229
+L G G A G+ + + SI+ +P +
Sbjct: 211 LLQAGVGSMAGGVLGYFVDVYSE------NNPHSIVVEPDKAD 247
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 39.2 bits (91), Expect = 0.003
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E + TGS K R A + G +P ++ S+GN G+A A G + +
Sbjct: 53 KLENLQRTGSYKVRGALNALLAGLERGDERP---VICASAGNHAQGVAWSAYRLGVQAIT 109
Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
VMP + K+ + GA + Q+ SYD A +A Q L F +P
Sbjct: 110 VMPHGAPQTKIAGVAHWGATV--RQHGNSYDEAYAF---ARELADQ-NGYRFLSAFDDP- 162
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
+ ++ T E+ D++++ G GG ASG+ +K + ++VGA
Sbjct: 163 DVIAGQGTVGIEL---AAHAPDVVIVPIGGGGLASGVALALKSQ--GVRVVGA 210
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 37.9 bits (89), Expect = 0.007
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E +NPTGS KDR + A+ G ++ S+GNT A AA G K V
Sbjct: 51 KYEGLNPTGSFKDRGMTMAVTKAKEEGA----KAVICASTGNTSASAAAYAARAGLKAFV 106
Query: 103 VMPM------KMSKEKVYTMKALGAKII 124
++P K+++ +Y GA+II
Sbjct: 107 LIPEGKIALGKLAQAVMY-----GAEII 129
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 37.3 bits (87), Expect = 0.011
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 26/168 (15%)
Query: 43 KCEFMNPTGSLKDR----AAWRMIEDA--ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK 96
K E + P+GS K R + + E V V S GN G+ A A
Sbjct: 21 KLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHV-------VCSSGGNAGLAAAYAARKL 73
Query: 97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD 156
G +V+P V ++ GA ++ E +A V +
Sbjct: 74 GVPCTIVVPESTKPRVVEKLRDEGATVVVHGKVWW----EADNYLREELAENDPGPVYVH 129
Query: 157 QFRNPNNPL---SHYETTAEEILRD--TGGKVDMIVLGCGTGGTASGI 199
F ++PL H + +EI + + KVD IV G GG +GI
Sbjct: 130 PF---DDPLIWEGH-SSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGI 173
>gnl|CDD|163556 TIGR03844, cysteate_syn, cysteate synthase. Members of this family
are cysteate synthase, an enzyme of alternate pathway to
sulfopyruvate, a precursor of coenzyme M [Biosynthesis
of cofactors, prosthetic groups, and carriers, Other,
Energy metabolism, Methanogenesis].
Length = 398
Score = 37.0 bits (86), Expect = 0.015
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 49 PTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKM 108
T S K+ A ++ + G G T+V S+GNTG A V+AI G +++V+P K
Sbjct: 96 RTCSFKELEALPTMQRLKERG----GKTLVVASAGNTGRAFAEVSAITGQPVILVVP-KS 150
Query: 109 SKEKVYT 115
S ++++T
Sbjct: 151 SADRLWT 157
>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members
of this protein family are the homodimeric, pyridoxal
phosphate enzyme diaminopropionate ammonia-lyase, which
adds water to remove two amino groups, leaving pyruvate.
Length = 396
Score = 37.0 bits (86), Expect = 0.016
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHP 135
T V + GN G G+A A G K VV MP ++E++ ++A GA+ T D +YD
Sbjct: 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTIT--DLNYDDA 172
Query: 136 EGMIAGAHRIASQMKNAVVLDQFRN-----PNNPLSHYETTAEEI---LRDTGG-KVDMI 186
+ A ++A + +V D P + Y T A E L++ G K +
Sbjct: 173 VRL---AWKMAQENGWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHV 229
Query: 187 VLGCGTGGTASGI----GRKIKEKCPSCKLVGAD 216
L G G A + E+ P +V D
Sbjct: 230 FLQAGVGSFAGAVQGYFASVYGEERPITVIVEPD 263
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 35.6 bits (83), Expect = 0.041
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 169 ETTAEEILRDTG---GKVDMIVLGCGTGGTA--SGIGRKIKEKCPSCKLVGADPFGSI 221
E +E L G +D + L TGG++ + + + P+ ++V D FGS+
Sbjct: 352 EAAVDEALAQAGVSPDAIDRVFL---TGGSSLVPAVRQAFAARFPAARIVEGDAFGSV 406
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 34.1 bits (79), Expect = 0.11
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 146 ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG--IGRKI 203
++ A+ + PL+ + L K D+I L TGG+A I +
Sbjct: 371 QQGLEEAI--------SQPLARILELVQLALDQAQVKPDVIYL---TGGSARSPLIRAAL 419
Query: 204 KEKCPSCKLVGADPFGSILA 223
++ P +VG D FGS+ A
Sbjct: 420 AQQLPGIPIVGGDDFGSVTA 439
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 34.0 bits (78), Expect = 0.13
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
K E +N TGS K A + A A + I E +G G+ A A+ G K +
Sbjct: 291 KREDLNHTGSHKINNA---LGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTI 347
Query: 103 VM---PMKMSKEKVYTMKALGAKII 124
M +K V MK LGA +I
Sbjct: 348 FMGEEDIKRQALNVERMKLLGANVI 372
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 33.1 bits (76), Expect = 0.23
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 58 AWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMK 117
A+ + AGVLKPG T++ +G G+ A +A G +++V S EK+ K
Sbjct: 122 AYHALR---RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR---SDEKLELAK 175
Query: 118 ALGA 121
LGA
Sbjct: 176 ELGA 179
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 32.9 bits (76), Expect = 0.26
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ A AA+ G + V+ M ++ V+ M+ LGA+++
Sbjct: 107 IAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVV 157
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 32.7 bits (75), Expect = 0.36
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ A AA+ G V M ++ K V+ M+ LGAK+I
Sbjct: 102 IAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVI 152
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 30.4 bits (69), Expect = 0.49
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224
+GCGTG R + E P + G D + L
Sbjct: 3 IGCGTGTLL----RALLEALPGLEYTGVDISPAALEA 35
>gnl|CDD|239161 cd02760, MopB_Phenylacetyl-CoA-OR, The MopB_Phenylacetyl-CoA-OR CD
contains the phenylacetyl-CoA:acceptor oxidoreductase,
large subunit (PadB2), and other related proteins. The
phenylacetyl-CoA:acceptor oxidoreductase has been
characterized as a membrane-bound molybdenum-iron-sulfur
enzyme involved in anaerobic metabolism of phenylalanine
in the denitrifying bacterium Thauera aromatica. Members
of this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 760
Score = 32.2 bits (73), Expect = 0.51
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 57 AAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM 106
A+ + D A + + VE S G + A ++GYK V V P
Sbjct: 163 RAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPH 212
>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated.
Length = 886
Score = 32.4 bits (74), Expect = 0.52
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 64 DAETAGVLKPGYTIV---EPSSGNT--GIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKA 118
DA T G L PG I+ PS G T G+ A AI+ V + ++MSKE++ M+
Sbjct: 208 DAMTNG-LHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL-VMRL 265
Query: 119 LGA 121
L A
Sbjct: 266 LSA 268
>gnl|CDD|211710 TIGR02035, D_Ser_am_lyase, D-serine ammonia-lyase. This family
consists of D-serine ammonia-lyase (EC 4.3.1.18), a
pyridoxal-phosphate enzyme that converts D-serine to
pyruvate and NH3. This enzyme is also called D-serine
dehydratase and D-serine deaminase and was previously
designated EC 4.2.1.14. It is homologous to an enzyme
that acts on threonine and may itself act weakly on
threonine [Energy metabolism, Amino acids and amines].
Length = 431
Score = 31.7 bits (72), Expect = 0.68
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH 134
Y+I S+GN G+ + +++A G+++ V M + K +++ G ++ ++D
Sbjct: 153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADARQWKKDKLRSHGVTVVEYESDYGVAV 212
Query: 135 PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI---LRDTGGKVD-----MI 186
EG + A N +D N Y A + G VD +
Sbjct: 213 EEG-----RKAAQSDPNCYFIDD-ENSRTLFLGYAVAASRLKAQFDQQGIIVDAEHPLFV 266
Query: 187 VLGCGTGGTASGIGRKIK 204
L CG GG G+ +K
Sbjct: 267 YLPCGVGGGPGGVAFGLK 284
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 31.8 bits (73), Expect = 0.69
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSKEK--VYTMKALGAKII 124
I E +G G+ A AA+ G + + M + ++ V+ MK LGA+++
Sbjct: 114 IAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVV 164
>gnl|CDD|235525 PRK05595, PRK05595, replicative DNA helicase; Provisional.
Length = 444
Score = 31.7 bits (72), Expect = 0.72
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 64 DAETAGVLKPGYTIV--EPSSGNT--GIGLAMVAAIKGYKMVVVMPMKMSKEK-VYTMKA 118
DA+T+G K ++ PS G T + +A AA++ K V + ++MSKE+ Y +
Sbjct: 192 DAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLC 251
Query: 119 LGAKI----IRTQN--DKSYD 133
A + +RT N DK ++
Sbjct: 252 SEANVDMLRLRTGNLEDKDWE 272
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 31.5 bits (72), Expect = 0.81
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
Query: 89 LAMVAAIKGYKMVVVMPMKMSKEKVYTM-----KALGAKIIRTQNDKSYDHPEGMIAGAH 143
L G +++ P ++M + GA++++ + + ++A
Sbjct: 91 LVRAFVEPGDTVLIPEP-------TFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIR 143
Query: 144 RIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR 177
V L NPNNP EE+
Sbjct: 144 DKTK----LVFLC---NPNNPTGTL-LPREELRA 169
>gnl|CDD|107208 cd06447, D-Ser-dehyd, D-Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- or D-serine to pyruvate and ammonia. D-serine
dehydratase serves as a detoxifying enzyme in most E.
coli strains where D-serine is a competitive antagonist
of beta-alanine in the biosynthetic pathway to
pentothenate and coenzyme A. D-serine dehydratase is
different from other pyridoxal-5'-phosphate-dependent
enzymes in that it catalyzes alpha, beta-elimination
reactions on amino acids.
Length = 404
Score = 31.2 bits (71), Expect = 0.93
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH 134
Y+I S+GN G+ + ++AA G+K+ V M + K +++ G ++ + D S
Sbjct: 135 YSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAV 194
Query: 135 PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI---LRDTGGKVD-----MI 186
EG + A+ +D + + L Y A + L + G KVD +
Sbjct: 195 EEG-----RKQAAADPMCYFVDDENSRDLFLG-YAVAASRLKAQLAELGIKVDAEHPLFV 248
Query: 187 VLGCGTGGTASGI 199
L CG GG G+
Sbjct: 249 YLPCGVGGAPGGV 261
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 31.1 bits (71), Expect = 1.1
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 48 NPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPM 106
NPT S KDR ++ A TA + G+T V S+GN +A AA G V +P
Sbjct: 115 NPTHSFKDR----VVSVALTAA-RELGFTTVACASTGNLANSVAAHAARAGLDSCVFIPA 169
Query: 107 KMSKEKVYTMKALGAKIIRTQNDKSYD 133
+ K+ G ++ D +YD
Sbjct: 170 DLEAGKIVGTLVYGPTLVAV--DGNYD 194
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 31.0 bits (71), Expect = 1.3
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 35/180 (19%)
Query: 50 TGSLKDR-AAWRMI---EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMP 105
T S K+R A +++ E+ GV + S+GN G+A A G +VMP
Sbjct: 50 TASFKERGALNKLLLLTEEERARGV-------IAMSAGNHAQGVAYHAQRLGIPATIVMP 102
Query: 106 MKMSKEKVYTMKALGAKIIR--TQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNN 163
KV + GA+++ D++ H A +A + V +
Sbjct: 103 RFTPTVKVERTRGFGAEVVLHGETLDEARAH-------ARELAEEEGLTFV--------H 147
Query: 164 PLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
P T A E+L D +D +V+ G GG SG+ K P +++G
Sbjct: 148 PYDDPAVIAGQGTVALEMLEDAPD-LDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQT 206
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 30.3 bits (68), Expect = 2.0
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLN--DVPENQISYNEVEGIGYSFAATTLDRNVID 259
KE PS + + Q + L+ EN E G ++ T N +D
Sbjct: 280 LSKETTPSFDDEALESMTPLECQFRVLDVISAVENAWMIIESGGGPHTRCVYTHKINKVD 339
Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ-------AAKSLRPDQRCV 309
+ + D +F K G G + +LRP +R V
Sbjct: 340 DFVQYIDTASFYPNESSKKGRGAFAGKGVERIVTSGMNNIFGAGVGHDALRPLKRLV 396
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 29.0 bits (65), Expect = 2.6
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 281 GLLVGGS-SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 339
L+ G + SG A + V + + LT+ + E KG LD
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGES--LKGALDNLI 59
Query: 340 ELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 378
+ A + A+ LR +I+ D +
Sbjct: 60 IVFATADDPAAARLL-SKAERLRERGGDDLIILDELTRL 97
>gnl|CDD|225590 COG3048, DsdA, D-serine dehydratase [Amino acid transport and
metabolism].
Length = 443
Score = 29.7 bits (67), Expect = 2.7
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH 134
Y+I S+GN G+ + +++A G+K+ V M K +++ G ++ + D
Sbjct: 161 YSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQDYGVAV 220
Query: 135 PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI---LRDTGGKVD-----MI 186
EG + A N +D N Y A+ + + G VD +
Sbjct: 221 EEG-----RKEAESDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFV 274
Query: 187 VLGCGTGGTASGIGRKIK 204
L CG GG G+ +K
Sbjct: 275 YLPCGVGGGPGGVAFGLK 292
>gnl|CDD|181547 PRK08760, PRK08760, replicative DNA helicase; Provisional.
Length = 476
Score = 29.9 bits (67), Expect = 2.9
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 64 DAETAGVLKPGYTIV---EPSSGNT--GIGLAMVAAIKGYKMVVVMPMKMSKEK 112
DA TAG L+P I+ P+ G T + +A AAIK K V V M+MS +
Sbjct: 220 DAMTAG-LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 29.9 bits (67), Expect = 2.9
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHY------ETTAEEILRDTGG----------- 181
A+ + + P+ + +E+ LR G
Sbjct: 56 CNFVPSPANPISLGASKQESPGILTPMPSSARLSSPQPRSEKSLRANGFATSQSMNFSDE 115
Query: 182 KVDMIVLGCGTGGTASGI 199
+ D+ ++GCG GG A+ I
Sbjct: 116 EYDVGIIGCGVGGHAAAI 133
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 29.5 bits (67), Expect = 3.3
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 58 AWRMIEDAETAGVLKPGYTIVEPSSGNTG--IGLAMVAAIKGYK--MVVVMP 105
+ + E + I+EP NT I LA ++A +V+V+P
Sbjct: 62 RFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLP 113
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 29.5 bits (67), Expect = 3.5
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 190 CGTGGTASGIGRKIKEKCPSCK 211
C T G G+ IK+ C CK
Sbjct: 186 CPTCN---GTGKIIKDPCGKCK 204
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 336
Score = 29.3 bits (65), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 62 IEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95
I + E + +P + + S TG+GLA+V I
Sbjct: 271 IPEEELERIFEPFFR-TDKSRSGTGLGLAIVKRI 303
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 29.3 bits (66), Expect = 4.0
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV 153
A++ K+++ E+V A+II+ ND PE ++ ++
Sbjct: 74 ALRDRKVIIPRHTYGEYERVARFF--AARIIKGPND-----PE-------KLEELVERNS 119
Query: 154 VLDQFRNPNNPLSHYETTAE--EILRDTGGKVDMIVL 188
V+ F NPNNP + E +L + +++L
Sbjct: 120 VV-FFCNPNNPDGKFYNFKELKPLLDAVEDRNALLIL 155
>gnl|CDD|223141 COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport
and metabolism].
Length = 284
Score = 29.2 bits (66), Expect = 4.2
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
AG +AS + A L + P + E R+ + D +V+G G G A G
Sbjct: 60 AGLVSLASPPEAASALKSYL-PELMVIEVEGKKLLEERELVERADAVVIGPGLGRDAEG 117
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 28.8 bits (65), Expect = 4.3
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224
+ CGTG A + + + ++VG D S+L
Sbjct: 58 VACGTGDMA----LLLAKSVGTGEVVGLDISESMLEV 90
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 29.3 bits (66), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 182 KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLV 213
+ D++V+G GT G + I K KE+ P+ +++
Sbjct: 9 ETDILVIGGGTAGPMAAI--KAKERNPALRVL 38
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 28.7 bits (65), Expect = 4.5
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 108 MSKEKVYTMKALGAKIIRTQN-DKSY----DHPEGMIAGAHRIASQMKNAVV 154
++K +A+ +I + S EGM+A A ++AS N VV
Sbjct: 31 IAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGGNVVV 82
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 29.0 bits (66), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 172 AEEI---LRDTGGKVDMIVLGCGTGGTASGI 199
A EI L + G D +V+ G+GGT +G+
Sbjct: 170 ALEIAQQLAEGGVDFDAVVVASGSGGTHAGL 200
>gnl|CDD|221881 pfam12982, DUF3866, Protein of unknown function (DUF3866). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 352 and 374 amino
acids in length.
Length = 320
Score = 28.7 bits (65), Expect = 5.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 335 LDEAEELEEMI------HSGTAMHVACQAAKSLRPDQRCVVILADG 374
A+ L+ + HS + K L P+ R I+ DG
Sbjct: 81 FRNADSLDGLPVVVGELHS--MLPPIVAGLKELNPNARIAYIMTDG 124
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 28.7 bits (65), Expect = 5.3
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ A A+ G + + M ++ V+ M+ LGA+++
Sbjct: 86 IAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVV 136
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 27.6 bits (62), Expect = 6.0
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 31/89 (34%)
Query: 84 NTGIGLAMVAAIKGYK-------------MVVVMPMK----MSKEKVYTMKALGAKIIRT 126
NTG + ++KGYK MVVV K M K+ + A ++R
Sbjct: 23 NTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLR------AVVVRQ 76
Query: 127 QNDKSYDHPEGMIAGAHRIASQMKNAVVL 155
+ K Y P+G R+ + NA V+
Sbjct: 77 R--KEYRRPDGT-----RVKFE-DNAAVI 97
>gnl|CDD|172826 PRK14350, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 669
Score = 28.6 bits (64), Expect = 6.2
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 183 VDMIVLGCGTGGTASGIGRKIKEKCPSCKLV----GADPFGSILAQPQSLNDVPENQISY 238
V++++ G KI + CPSCK GA F N
Sbjct: 383 VELVIEKLSVGFF------KIPDNCPSCKTALIKEGAHLF------------CVNNHCPS 424
Query: 239 NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
VE I Y F + + ++ G FL ++ I SE
Sbjct: 425 VIVERIKY-FCS----KKCMNIVGLSDKTIEFLFEKKFISSE 461
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 28.4 bits (64), Expect = 6.4
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 146 ASQMKNAVVLDQFRNPNNPLSHYETTAE--------EILRDTGGKVDMIVLGCGTGG-TA 196
M+ + D P + + + + E + G D+I+LG G G A
Sbjct: 83 YGLMRRNL-FDHIDIPAEFIHNGDASDPDAECAARYEAKLPSAGGFDLILLGMGEDGHIA 141
Query: 197 S 197
S
Sbjct: 142 S 142
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 28.3 bits (64), Expect = 6.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 198 GIGRKIKEKCPSCK 211
G G+ IKE C +CK
Sbjct: 194 GEGKIIKEPCSTCK 207
>gnl|CDD|205018 pfam12683, DUF3798, Protein of unknown function (DUF3798). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 247 and 417 amino
acids in length. Most of the proteins in this family
have an N-terminal lipoprotein attachment site. These
proteins have distant similarity to periplasmic ligand
binding families such as pfam02608, which suggests that
this family have a similar role.
Length = 275
Score = 28.4 bits (64), Expect = 6.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 141 GAHRIASQMKNA-VVLDQFRNPNNPLSHYETTAEEILR---DTGGKVDMIVLGCGTGGTA 196
A + + + + P+N + ETT +I+ D KV I++ GT
Sbjct: 21 AAEALLEKYGDDMIKHVTL--PDNFSTEQETTISKIVSLADDP--KVKAIIVSQAVPGTL 76
Query: 197 SGIGRKIKEKCPSCKLVGADP 217
+KIKEK P L+ A P
Sbjct: 77 PAF-QKIKEKRPDILLIAAPP 96
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 26.1 bits (58), Expect = 7.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 198 GIGRKIKEKCPSCK 211
G G+ IK+ CP CK
Sbjct: 49 GTGKIIKDPCPKCK 62
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 25.8 bits (57), Expect = 8.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 198 GIGRKIKEKCPSCK 211
G G+ IK+ C CK
Sbjct: 49 GTGKIIKDPCKVCK 62
>gnl|CDD|185073 PRK15118, PRK15118, universal stress global response regulator
UspA; Provisional.
Length = 144
Score = 27.5 bits (61), Expect = 8.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVM 104
GY I E SG+ +G +V AIK Y M +V+
Sbjct: 78 GYPITETLSGSGDLGQVLVDAIKKYDMDLVV 108
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 27.7 bits (61), Expect = 8.6
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 99 KMVVVMPMKMSKEKVYTMKALGAK--------IIRTQNDKSY---DHPEGMIAGAHRIA- 146
MV+ + Y K LG K I+ D+ Y D + A +A
Sbjct: 21 DMVIGLGT--GSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAF 78
Query: 147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCG 191
+ + + P+ E + D +D+ V G G
Sbjct: 79 EHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAG 123
>gnl|CDD|130873 TIGR01814, kynureninase, kynureninase. This model describes
kynureninase, a pyridoxal-phosphate enzyme. Kynurinine
is a Trp breakdown product and a precursor for NAD. In
Chlamydia psittaci, an obligate intracellular pathogen,
kynureninase makes anthranilate, a Trp precursor, from
kynurenine. This counters the tryptophan hydrolysis that
occurs in the host cell in response to the pathogen
[Energy metabolism, Amino acids and amines].
Length = 406
Score = 28.2 bits (63), Expect = 9.9
Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 26/117 (22%)
Query: 232 PENQISYNEVEGIGYSFAAT-TLDRNVIDQWGKC-------GDKDTFLMARRLIKSEGLL 283
EN + Y + +G A + +D+W K G F + L+K L
Sbjct: 24 DENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK--LRL 81
Query: 284 VGGSSGTAMHVACQA---------AKSLRPDQRCVVILADGVRNYLTKFISDEWMIE 331
VG V A +P + IL + F SD + IE
Sbjct: 82 VGAKEDEV--VVMNTLTINLHLLLASFYKPTPKRYKILLEA-----KAFPSDHYAIE 131
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 27.8 bits (63), Expect = 9.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 329 MIEKGFLDEAEELEEM 344
M+E+G L+E L
Sbjct: 213 MLEQGLLEEVRALLAR 228
Score = 27.8 bits (63), Expect = 9.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 388 MIEKGFLDEAEELEEM 403
M+E+G L+E L
Sbjct: 213 MLEQGLLEEVRALLAR 228
>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis].
Length = 211
Score = 27.6 bits (62), Expect = 9.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 170 TTAEEILRDTGGKVDMIVLG--CGTG 193
TTAEE+ D GG+VD+I+ G C G
Sbjct: 153 TTAEEVRADFGGQVDLIIDGGPCRGG 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,965,447
Number of extensions: 2049202
Number of successful extensions: 2364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2273
Number of HSP's successfully gapped: 132
Length of query: 404
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 305
Effective length of database: 6,546,556
Effective search space: 1996699580
Effective search space used: 1996699580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)