RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14801
(404 letters)
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 477 bits (1230), Expect = e-168
Identities = 169/302 (55%), Positives = 226/302 (74%), Gaps = 3/302 (0%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AKCEF N GS+KDR + RMIEDAE G LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 129 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 188
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+VMP KMS EKV ++ALGA+I+RT + +D PE + A R+ +++ N+ +LDQ+RN
Sbjct: 189 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 248
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
+NPL+HY+TTA+EIL+ GK+DM+V GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 249 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 308
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
LA+P+ LN + + + EVEGIGY F T LDR V+D+W K D++ F AR LI EG
Sbjct: 309 LAEPEELN---QTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 365
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
LL GGS+G+ + VA +AA+ L+ QRCVVIL D VRNY+TKF+SD WM++KGFL E +
Sbjct: 366 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLT 425
Query: 342 EE 343
E+
Sbjct: 426 EK 427
Score = 83.2 bits (206), Expect = 1e-17
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
+G+ + VA +AA+ L+ QRCVVIL D VRNY+TKF+SD WM++KGFL E + E+
Sbjct: 372 AGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEK 427
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 479 bits (1234), Expect = e-167
Identities = 175/299 (58%), Positives = 218/299 (72%), Gaps = 3/299 (1%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AKCEF+NP GS+KDR +RM++DAE G+LKPGYTI+EP+SGNTGIGLAM A+KGYK +
Sbjct: 81 AKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCI 140
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+VMP KMS EKV ++ LGAKIIRT + +YD PEG+I A ++ + N++VLDQ+RN
Sbjct: 141 IVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNA 200
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
NPL+HY+ TA EIL KVDMIV+ GT GT SGIGRKIKE+ PSC++VG DP+GSI
Sbjct: 201 GNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSI 260
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
LA+P LN + + + EVEGIGY F T D V+D W K GD D F M+RRL EG
Sbjct: 261 LARPAELN---KTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEG 317
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
LL GGSSG AMH A + A+ L+ QRCVVIL DG+RNY+TKF+SD WM + F + E
Sbjct: 318 LLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376
Score = 82.8 bits (205), Expect = 2e-17
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 399
SG AMH A + A+ L+ QRCVVIL DG+RNY+TKF+SD WM + F + E
Sbjct: 324 SGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 304 bits (780), Expect = e-102
Identities = 125/307 (40%), Positives = 174/307 (56%), Gaps = 24/307 (7%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G+ PL+ + + AK EF NP S+KDR M++ AE AG++KP I+EP+
Sbjct: 15 GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 74
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM--- 138
SGNTGI LAMV A +GY+ V+ MP MS E+ ++A GA++I T +GM
Sbjct: 75 SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT------PGADGMSGA 128
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
IA A +A + V QF NP NP H TTAEE+ RDT GKVD++V G GTGGT +G
Sbjct: 129 IAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITG 188
Query: 199 IGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
+ + IKE+ PS + V +P S +L+ Q + ++GIG F LD+++
Sbjct: 189 VAQVIKERKPSARFVAVEPAASPVLSGGQK---------GPHPIQGIGAGFVPPVLDQDL 239
Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILAD 314
+D+ G++D +ARRL + EGLLVG SSG A A Q A+ RP + VV+L D
Sbjct: 240 VDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPD 297
Query: 315 GVRNYLT 321
YL+
Sbjct: 298 FGERYLS 304
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 303 bits (778), Expect = e-102
Identities = 114/284 (40%), Positives = 159/284 (55%), Gaps = 20/284 (7%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K EFMNP S+KDR A MIE AE AG LKPG TIVEP+SGNTGIGLAMVAA KGYK V
Sbjct: 33 LKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAV 92
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
+VMP MS E+ ++A GA+++ T +GM IA A + + + QF
Sbjct: 93 LVMPDTMSLERRNLLRAYGAELVLT------PGAQGMRGAIAKAEELVRE-HGYFMPQQF 145
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
+N NP H TT +EI+ G ++D V G GTGGT +G G+ ++E P+ K+ +P
Sbjct: 146 KNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPA 205
Query: 219 GS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
S +L+ + ++++GIG F LD ++ D ++ F ARR
Sbjct: 206 DSPVLSGGKP---------GPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAA 256
Query: 278 KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
+ EG+L G SSG A+H A + AK L ++ + I+ YL+
Sbjct: 257 REEGILGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300
Score = 30.6 bits (70), Expect = 0.91
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 345 IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
I SG A+H A + AK L ++ + I+ YL+
Sbjct: 265 ISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 299 bits (769), Expect = e-100
Identities = 114/286 (39%), Positives = 167/286 (58%), Gaps = 22/286 (7%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG--YTIVEPSSGNTGIGLAMVAAIKGYK 99
K E +NP GS+KDR AW MI+DAE G+L+PG IVEP+SGNTGIGLAM+AA +GY+
Sbjct: 28 VKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYR 87
Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLD 156
+++ MP +MS+E+ +KA GA+++ T D M A R+ + A + D
Sbjct: 88 LILTMPAQMSEERKRVLKAFGAELVLT------DPERRMLAAREEALRLKEE-LGAFMPD 140
Query: 157 QFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
QF+NP N +HYETT E+ G++D V G GTGGT +G+GR +KE+ P K++ +
Sbjct: 141 QFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVE 200
Query: 217 PFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARR 275
P S +L+ + + +G+G F LD +++D + ++D F +ARR
Sbjct: 201 PARSNVLSGGKM---------GQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARR 251
Query: 276 LIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
L + EGL +G SSG + A Q A+ L P +R I DG YL+
Sbjct: 252 LAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297
Score = 29.4 bits (67), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 345 IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
+ SG + A Q A+ L P +R I DG YL+
Sbjct: 262 MSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 300 bits (770), Expect = e-100
Identities = 97/287 (33%), Positives = 137/287 (47%), Gaps = 32/287 (11%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
AK E NPTGS+KDR A RMIE AE G+L+PG TI+EP+SGNTGI LAM A +KGY+++
Sbjct: 41 AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 100
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
VMP S E+ ++ GA+II + G +A A +A+ + V+L Q+
Sbjct: 101 CVMPENTSVERRQLLELYGAQIIFS------AAEGGSNTAVATAKELAATNPSWVMLYQY 154
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
NP N SHY T E+L D ++ V G GT GT G GR ++E + K+V A+P
Sbjct: 155 GNPANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPR 213
Query: 219 GSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIK 278
+L + F D ++ G D R L+
Sbjct: 214 YG--EGVYAL-------------RNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVH 258
Query: 279 SEGLLVGGSSGTAMHVACQAAKSLRPDQRC-----VVILADGVRNYL 320
+EG+ G S+G +H A +++AD YL
Sbjct: 259 TEGIFAGISTGAVLHAALGVGA--GALAAGERADIALVVADAGWKYL 303
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 299 bits (767), Expect = e-100
Identities = 103/308 (33%), Positives = 152/308 (49%), Gaps = 38/308 (12%)
Query: 22 GKVPL-----LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
G PL + + K E NP GS+KDRAA MI +AE G +KPG
Sbjct: 9 GNTPLVKLQRMGPDNGSEVW-----LKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
++E +SGNTGI LAM+AA+KGY+M ++MP MS+E+ M+A GA++I +
Sbjct: 64 LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV------TKEQ 117
Query: 137 GM---IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
GM A +A++ + +LDQF NP+NP +HY TT EI + TGG++ V GT
Sbjct: 118 GMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTT 176
Query: 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253
GT +G+ R ++E+ +VG P + I + +
Sbjct: 177 GTITGVSRFMREQSKPVTIVGLQPEEG-------------SSIP--GIRRWPTEYLPGIF 221
Query: 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILA 313
+ +++D+ +D R L EG+ G SSG A+ A + A + PD V I+
Sbjct: 222 NASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN-PDAVVVAIIC 280
Query: 314 D-GVRNYL 320
D G R YL
Sbjct: 281 DRGDR-YL 287
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 299 bits (769), Expect = e-100
Identities = 97/288 (33%), Positives = 148/288 (51%), Gaps = 25/288 (8%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKM 100
K E NP S+KDR + + + AE G L PG + +VE SSGNTG+ LA + AI+GYK+
Sbjct: 39 LKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKV 98
Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQ 157
++ MP MS E+ ++ GA++I T GM +A A +I + NAV+ DQ
Sbjct: 99 IITMPESMSLERRCLLRIFGAEVILT------PAALGMKGAVAMAKKIVAANPNAVLADQ 152
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
F N L H ETT EI T VD + G GTGGT +G+ R +K+ ++V +P
Sbjct: 153 FATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEP 212
Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
S +L+ + ++++GIG F LDR++ID+ D A +L
Sbjct: 213 TESPVLSGGKP---------GPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKL 263
Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
+S+G+ G S G ++ A + A+ RP + V ++ YL+
Sbjct: 264 TRSDGVFCGFSGGANVYAALKIAE--RPEMEGKTIVTVIPSFGERYLS 309
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 298 bits (766), Expect = 1e-99
Identities = 119/308 (38%), Positives = 170/308 (55%), Gaps = 25/308 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
G PL+ + + AK E M P S+KDR + MI DAE G++KPG ++ +EP
Sbjct: 14 GNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEP 73
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
+SGNTG+GLA AA KGYK+++ MP MS E+ + A G +++ T D +GM
Sbjct: 74 TSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLT------DPAKGMKG 127
Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
IA A I ++ N +L QF NP NP HYETT EI + TGGK+D V G GTGGT +
Sbjct: 128 AIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTIT 187
Query: 198 GIGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
G G+ +KE+ + KL G +P S IL+ + ++++GIG F + L+ +
Sbjct: 188 GAGKYLKEQNANVKLYGVEPVESAILSGGKP---------GPHKIQGIGAGFIPSVLNVD 238
Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILA 313
+ID+ + ++ MAR+L EGLLVG SSG A A + A+ RP + V I
Sbjct: 239 LIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFP 296
Query: 314 DGVRNYLT 321
YL+
Sbjct: 297 SFGERYLS 304
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 295 bits (757), Expect = 2e-98
Identities = 110/289 (38%), Positives = 152/289 (52%), Gaps = 20/289 (6%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E NP+ S+K R M+ AE G L G IV+ +SGNTGI LA VAA +GYK+
Sbjct: 30 VKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKIT 89
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNA-VVLDQ 157
+ MP MS E+ + LG ++ T + +GM IA A I + + V+L Q
Sbjct: 90 LTMPETMSLERKRLLCGLGVNLVLT------EGAKGMKGAIAKAEEIVASDPSRYVMLKQ 143
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK-EKCPSCKLVGAD 216
F NP NP H ETT EI +DT GKVD++V G GTGG+ +GI R IK + V +
Sbjct: 144 FENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVE 203
Query: 217 PFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARR 275
P S +++Q + E + ++++GIG F LD ++ID+ ARR
Sbjct: 204 PVESPVISQTLA---GEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARR 260
Query: 276 LIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
L+ EG+L G SSG A+ A + AK P D+ VVIL YL+
Sbjct: 261 LMAEEGILAGISSGAAVAAADRLAK--LPEFADKLIVVILPSASERYLS 307
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 298 bits (765), Expect = 4e-98
Identities = 117/308 (37%), Positives = 169/308 (54%), Gaps = 25/308 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
GK P++ + + AK E M P S+KDR + M+ DAE G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
+SGNTGIGLA +AA +GY++++ MP MS E+ +KA GA+++ T D +GM
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT------DPAKGMTG 235
Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
+ A I +A +L QF NP NP HYETT EI DT GKVD+ V G GTGGT +
Sbjct: 236 AVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTIT 295
Query: 198 GIGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
G+GR IKEK P +++G +P S IL+ + ++++GIG F LD+
Sbjct: 296 GVGRFIKEKNPKTQVIGVEPTESDILSGGKP---------GPHKIQGIGAGFIPKNLDQK 346
Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILA 313
++D+ ++ A++L EGL+VG SSG A A + AK RP + V+
Sbjct: 347 IMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPENAGKLIAVVFP 404
Query: 314 DGVRNYLT 321
YL+
Sbjct: 405 SFGERYLS 412
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 292 bits (749), Expect = 2e-97
Identities = 114/284 (40%), Positives = 156/284 (54%), Gaps = 23/284 (8%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E NP GS+KDR A MI DAE G+LK G IVEP+SGN GI +AM+ A +G++++
Sbjct: 35 LKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVI 92
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
+ MP MS E+ +K LGA+++ T GM + A I+ + A +L+QF
Sbjct: 93 LTMPETMSVERRKVLKMLGAELVLT------PGELGMKGAVEKALEISRE-TGAHMLNQF 145
Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADP 217
NP N SH TT EIL+ ++D V G GTGGT SG+GR +K K+V +P
Sbjct: 146 ENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP 205
Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
S +L+ Q + ++GIG F LDR+VID+ D++ + MAR L
Sbjct: 206 AKSPVLSGGQP---------GKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYL 256
Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
K EGLLVG SSG + A + A+ L PD R V + D YL
Sbjct: 257 AKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 345 IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 379
I SG + A + A+ L PD R V + D YL
Sbjct: 266 ISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 292 bits (749), Expect = 7e-97
Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 26/288 (9%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E+ NP S+KDR + ++ A G LKPG I+E +SGNTGI L A+ GY++
Sbjct: 46 VKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVN 105
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNA-VVLDQ 157
+ MP MS E+ MKA GA++I T + +GM I +++ + V +Q
Sbjct: 106 IAMPSTMSVERQMIMKAFGAELILT------EGKKGMPGAIEEVNKMIKENPGKYFVANQ 159
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
F NP+N +H+ TA EI DT G+VD++V GT GT G+ K+KEK K++ +P
Sbjct: 160 FGNPDNTAAHH-YTANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEP 218
Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
S +L + ++GIG F + +D+ +D + MAR +
Sbjct: 219 EESAVLEGKAK---------GPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAV 269
Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
+K +G++ G SSG A+ + A+ +P + V+I+ YL+
Sbjct: 270 VKYDGIMCGMSSGAAILAGLKEAE--KPENEGKTIVIIVPSCGERYLS 315
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 276 bits (709), Expect = 3e-90
Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 35/288 (12%)
Query: 42 AKCEFMNPTG-SLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100
K E+ NP S+KDR A +I ++ G + + +S N G+ L+ VA + GY+
Sbjct: 114 LKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGSLVADATSSNFGVALSAVARLYGYRA 171
Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQ 157
V +P + + LGA++I + + + + V ++Q
Sbjct: 172 RVYLPGAAEEFGKLLPRLLGAQVIVD------PEAPSTVHLLPRVMKDSKN-EGFVHVNQ 224
Query: 158 FRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
F N N +H TA EI + + + GT G S ++ PS + V
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
Query: 215 ADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMA 273
P + + + ++ + ++
Sbjct: 285 VQPAQGDSIPGIR----------------RVETGMLW-INMLDISYTLAEVTLEEAMEAV 327
Query: 274 RRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYL 320
+ +S+GL++G S G A+ + A VV++ D YL
Sbjct: 328 VEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYL 375
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 90.8 bits (226), Expect = 2e-20
Identities = 69/308 (22%), Positives = 109/308 (35%), Gaps = 36/308 (11%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + T K E +NPTGS KDR + DA G ++ S
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAVLCAS 92
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+GNT A AA G V++P K++ K+ GAKII+ +G
Sbjct: 93 TGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQI---------DGNFD 143
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
+A +M N NP+ +T A EI+ G D+ L G G +
Sbjct: 144 DCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITA 203
Query: 199 IGRKIKE--------KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
+ E K P +++G G A P L + + + IG A+
Sbjct: 204 YWKGYTEYHQLGLIDKLP--RMLGTQAAG---AAPLVLGEPVSHPETIATAIRIGSP-AS 257
Query: 251 TTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRP 304
T Q D++ + + EG+ V +S ++ +A +
Sbjct: 258 WTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVAR 317
Query: 305 DQRCVVIL 312
V +
Sbjct: 318 GSTVVCTV 325
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 90.0 bits (224), Expect = 3e-20
Identities = 74/320 (23%), Positives = 113/320 (35%), Gaps = 54/320 (16%)
Query: 16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY 75
TP +P K P + K + K E +NPTGS KDR + A G
Sbjct: 28 STPLIPLKGPEEARKKGIRLYA-----KYEGLNPTGSFKDRGMTLAVSKAVEGGA----Q 78
Query: 76 TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDH 134
+ S+GNT A AA G +VV+P ++ KV GA+I++
Sbjct: 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQV-------- 130
Query: 135 PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGT 192
EG A R+ ++ A + N NP +T A E++ + G L G
Sbjct: 131 -EGNFDDALRLTQKLTEAFPV-ALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 193 GGTASGIGRKIKE--------KCPSCKLVGADPFGSILAQPQSLNDVPENQ------ISY 238
G + K + P +++G G A P L E I
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAG---AAPLVLGRPVERPETLATAIR- 242
Query: 239 NEVEGIGYSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHV 294
IG A+ ++ G D++ R L + EG+ +S AM
Sbjct: 243 -----IGNP-ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAG 296
Query: 295 ACQAAKS--LRPDQRCVVIL 312
+ + L P+ V+ L
Sbjct: 297 VFKLLREGRLEPESTVVLTL 316
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 89.3 bits (222), Expect = 7e-20
Identities = 60/313 (19%), Positives = 102/313 (32%), Gaps = 45/313 (14%)
Query: 22 GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G PL+ + K E +NPTGS KDR I A AG ++
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----RAVIC 84
Query: 80 PSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
S+GNT A AA G + V++P ++ K+ GAK++ +G
Sbjct: 85 ASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAI---------QGT 135
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGTGGTA 196
A I ++ ++ N NP +T A EI G D + G G
Sbjct: 136 FDDALNIVRKIGENFPVE-IVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNI 194
Query: 197 SGIGRKIKE--------KCPSCKLVGADPFGS---ILAQPQSLNDVPENQISYNEVEGIG 245
+ + K K P +++G G+ + P I IG
Sbjct: 195 TAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIK------IG 246
Query: 246 YSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS 301
+ + G D + + + +EG+ +S ++ + +
Sbjct: 247 NP-YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVRE 305
Query: 302 --LRPDQRCVVIL 312
+ + L
Sbjct: 306 GFFKGGEVVTCTL 318
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 84.8 bits (210), Expect = 4e-18
Identities = 54/321 (16%), Positives = 107/321 (33%), Gaps = 48/321 (14%)
Query: 22 GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
G L + G L D K ++ TGS KD ++ +K +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 79 EPSSGNTGIGLAMVAAIKGYKMVVVMP-MKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG 137
S+G+T L+ A G +V +P K+S ++ A GA ++ +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSI---------DT 239
Query: 138 MIAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKV-DMIVLGCGTGG 194
G ++ ++ + + N N L +T A EIL+ +V D +++ G G
Sbjct: 240 DFDGCMKLIREITAELPIY-LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLG 298
Query: 195 TASGIGR--------KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEG--- 243
+ + ++ P ++V A A P + +
Sbjct: 299 NIYAFYKGFKXCQELGLVDRIP--RMVCAQAAN---ANPLY-LHYKSGWKDFKPMTASTT 352
Query: 244 ------IGYSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293
IG + + + + +++ + A S G+ + +G A+
Sbjct: 353 FASAIQIGDP-VSIDRAVYALKKCNGIVEEATEEEL-MDAMAQADSTGMFICPHTGVALT 410
Query: 294 VACQAAKS--LRPDQRCVVIL 312
+ + P R VV+
Sbjct: 411 ALFKLRNQGVIAPTDRTVVVS 431
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 82.9 bits (206), Expect = 7e-18
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
KCE G+ K R A ++ E AGV + SSGN +A+ A I G
Sbjct: 46 KCENFQKMGAFKFRGALNALSQLNEAQRKAGV-------LTFSSGNHAQAIALSAKILGI 98
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
++MP+ + KV K G ++I D+ D E A I+ + +
Sbjct: 99 PAKIIMPLDAPEAKVAATKGYGGQVIMY--DRYKDDRE---KMAKEISER-EGLT----I 148
Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
P + H T A+E+ + G +D + + G GG SG + P+C++
Sbjct: 149 IPPYD---HPHVLAGQGTAAKELFEEVGP-LDALFVCLGGGGLLSGSALAARHFAPNCEV 204
Query: 213 VGADPFG 219
G +P
Sbjct: 205 YGVEPEA 211
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 78.7 bits (195), Expect = 1e-16
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 30/188 (15%)
Query: 43 KCEFMNPTGSLKDRAAW-RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E + TGS K R A + + G+ + SSGN G+A A + G K +
Sbjct: 40 KAEHLQKTGSFKARGALSKALALENPKGL-------LAVSSGNHAQGVAYAAQVLGVKAL 92
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
VVMP S K +A GA+++ + + E A + + +P
Sbjct: 93 VVMPEDASPYKKACARAYGAEVVDR--GVTAKNRE---EVARALQEE-TGYA----LIHP 142
Query: 162 NNPLSHYE------TTAEEILRDT---GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
+ T E+L G ++ G GG +G+ +K P+ +
Sbjct: 143 FD---DPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLV 199
Query: 213 VGADPFGS 220
+G +P +
Sbjct: 200 LGVEPEAA 207
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 78.8 bits (195), Expect = 2e-16
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 34/190 (17%)
Query: 43 KCEFMNPTGSLKDRAAW----RMIEDAE---TAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95
KCE TGS K R A ++ DA V V SSGN G L A +
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV-------VTHSSGNHGQALTYAAKL 97
Query: 96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL 155
+G +V+P K ++A GA I+ + S + E A R+ + +
Sbjct: 98 EGIPAYIVVPQTAPDCKKLAIQAYGASIVYC--EPSDESRE---NVAKRVTEE-TEGI-- 149
Query: 156 DQFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS 209
+PN T A E+L VD +V+ G GG +GI +K PS
Sbjct: 150 --MVHPNQ---EPAVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAGIAITVKALKPS 203
Query: 210 CKLVGADPFG 219
K+ A+P
Sbjct: 204 VKVYAAEPSN 213
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 76.5 bits (189), Expect = 1e-15
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 33/190 (17%)
Query: 43 KCEFMNPTGSLKDRAAWRMIE---DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
K + P+GS K R + A V S+GN G+ A A G
Sbjct: 66 KMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF-------VCSSAGNAGMAAAYAARQLGVP 118
Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
+V+P + +K GA D++++ A +A V +
Sbjct: 119 ATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFEL-------AKALAKNNPGWVYI-- 169
Query: 158 FRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE-KCPSC 210
P + +E+ K I L G GG G+ + ++E
Sbjct: 170 -----PPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDV 224
Query: 211 KLVGADPFGS 220
++ + FG+
Sbjct: 225 PVIAMETFGA 234
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 72.9 bits (179), Expect = 2e-14
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 17/168 (10%)
Query: 64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123
+ T + GN G G+A A G V+ MP ++E+V + LGA+
Sbjct: 102 FEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAEC 161
Query: 124 IRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH------YETTAEEI-- 175
I T D +YD + A Q V+ Y T A+E
Sbjct: 162 IVT--DMNYDDTV---RLTMQHA-QQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVE 215
Query: 176 -LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC--PSCKLVGADPFGS 220
+R+ G ++L G G A G+ + + + + +P +
Sbjct: 216 QMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKA 263
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 71.0 bits (174), Expect = 1e-13
Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 28/263 (10%)
Query: 50 TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS 109
G L + + E Y+I S+GN G+ + +++A G+K+ V M
Sbjct: 137 AGLLTLDDDYSKLLSPEFKQFFS-QYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAR 195
Query: 110 KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYE 169
K +++ G ++ + D Y + + A N +D N Y
Sbjct: 196 AWKKAKLRSHGVTVVEYEQD--YGVA---VEEGRKAAQSDPNCFFIDDE-NSRTLFLGYS 249
Query: 170 TTAEEILR--------DTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGS 220
+ + + L CG GG G+ +K A+P S
Sbjct: 250 VAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAA---------TTLD--RNVIDQWGKCGDKDT 269
++ +QIS ++ + A ++D + D+
Sbjct: 310 P-CMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTM 368
Query: 270 FLMARRLIKSEGLLVGGSSGTAM 292
+ M L + EG+ + S+ M
Sbjct: 369 YDMLGWLAQEEGIRLEPSALAGM 391
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 70.3 bits (173), Expect = 2e-13
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 31/188 (16%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E M TGS K R A+ + E + GV V S+GN G+++ A+ G
Sbjct: 60 KFENMQRTGSFKIRGAFNKLSSLTEAEKRKGV-------VACSAGNHAQGVSLSCAMLGI 112
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
VVMP K KV A+++ +++ A I + + +
Sbjct: 113 DGKVVMPKGAPKSKVAATCDYSAEVVLH--GDNFNDTI---AKVSEIVET-EGRIFI--- 163
Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
P + T EI+ D VD +++ G GG +GI IK P+ K+
Sbjct: 164 ----PPYDDPKVIAGQGTIGLEIMEDL-YDVDNVIVPIGGGGLIAGIAIAIKSINPTIKV 218
Query: 213 VGADPFGS 220
+G
Sbjct: 219 IGVQAENV 226
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 67.6 bits (166), Expect = 9e-13
Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 34/190 (17%)
Query: 43 KCEFMNPTGSLKDRAAWRMIE---DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
KCE + P+GS K R + + V S GN GI A A G
Sbjct: 27 KCENVQPSGSFKIRGIGHFCQEMAKKGCRHL-------VCSSGGNAGIAAAYAARKLGIP 79
Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
+V+P S + V ++ GA++ T D++ A +A + V
Sbjct: 80 ATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLR-------AQELAKRDGWENV--- 129
Query: 158 FRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGC-GTGGTASGIGRKIKEKCPSC 210
P H + +E+ +VL G G A + ++
Sbjct: 130 -----PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHV 184
Query: 211 KLVGADPFGS 220
++ + G+
Sbjct: 185 PIIAMETHGA 194
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 67.6 bits (166), Expect = 2e-12
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E P S K R A+ M+ E+ + GV + S+GN G+A +A G
Sbjct: 51 KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGV-------ITASAGNHAQGVAFSSARLGV 103
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLD 156
K ++VMP + KV ++ G +++ D++ A ++ Q + +
Sbjct: 104 KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAK-------AIELSQQ-QGFTWVP 155
Query: 157 QFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSC 210
F +P T A E+L+ +D + + G GG A+G+ IK+ P
Sbjct: 156 PFDHP-------MVIAGQGTLALELLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQI 207
Query: 211 KLVGADPFGS 220
K++ + S
Sbjct: 208 KVIAVEAEDS 217
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 63.4 bits (155), Expect = 3e-11
Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 43 KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
K E S K R A+ M+ + GV + S+GN G+A+
Sbjct: 80 KREDKQRVFSFKLRGAYNMMSNLSREELDKGV-------ITASAGNHAQGVALAGQRLNC 132
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLD 156
+VMP + K+ ++ALG ++ D++ H A ++ + +
Sbjct: 133 VAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTH-------ALELSEK-DGLKYIP 184
Query: 157 QFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSC 210
F +P T EI R + + + G GG +G+ K+ P+
Sbjct: 185 PFDDP-------GVIKGQGTIGTEINRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNT 236
Query: 211 KLVGADPFGS 220
K++G +P+G+
Sbjct: 237 KIIGVEPYGA 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 59/318 (18%), Positives = 97/318 (30%), Gaps = 109/318 (34%)
Query: 65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVY--TMKAL--- 119
A+ G PG + G TG +V A V + S E + KA+
Sbjct: 253 AKLLG-FTPG-ELRSYLKGATGHSQGLVTA-------VAIAETDSWESFFVSVRKAITVL 303
Query: 120 ---GAKIIRTQN------------DKSYDHPEG----M--IAGAHRIASQMKNAVVLDQF 158
G R + S ++ EG M I+ + Q +++
Sbjct: 304 FFIGV---RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY----VNKT 356
Query: 159 RNPNNPLSHYETTAEEI-LRDTGGKVDMIVLGCGTGGTASGIG-----RKIK-------E 205
N + P EI L + +V+ +G S G RK K
Sbjct: 357 -NSHLP----AGKQVEISLVNGA---KNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 206 KCPSCK---------L-VGADPFGSIL---AQPQSLNDVPENQIS----------YNEVE 242
+ P + L V + PF S L A D+ +N +S Y+ +
Sbjct: 406 RIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 243 GIGYSFAATTLDRNVIDQ-------WGKCGDKDTFLMARRLI-----KSEGL--LVGGSS 288
G + ++ ++D W T A ++ + GL L +
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETT----TQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 289 -GTAMHVACQAAKSLRPD 305
GT + V + PD
Sbjct: 521 DGTGVRVIVAGTLDINPD 538
Score = 42.3 bits (99), Expect = 2e-04
Identities = 40/244 (16%), Positives = 84/244 (34%), Gaps = 75/244 (30%)
Query: 172 AEEILRDT-GGKVDMIVLGCGTGGTA--SGI-GRKIKEKCPSCKLVGADPFGSILAQPQS 227
A+ +DT G + IV+ T G G++I+E + ++ L +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--MIFETIVDGKLKTEKI 1706
Query: 228 LNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDT-------FLMAR---RLI 277
++ E+ SY +F + ++ ++ T LM + +
Sbjct: 1707 FKEINEHSTSY--------TFRS---EKGLLSA--------TQFTQPALTLMEKAAFEDL 1747
Query: 278 KSEGLLVGGS-----S-G--TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM 329
KS+GL+ + S G A+ A A V+ + V + +
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAAL--ASLAD---------VMSIESLVE--VVFY------ 1788
Query: 330 IEKG-FLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDE-- 386
+G + A +E+ S M +A P + + ++ Y+ + +
Sbjct: 1789 --RGMTMQVAVPRDELGRSNYGM-IAI------NPGRVAASFSQEALQ-YVVERVGKRTG 1838
Query: 387 WMIE 390
W++E
Sbjct: 1839 WLVE 1842
Score = 34.6 bits (79), Expect = 0.071
Identities = 36/240 (15%), Positives = 60/240 (25%), Gaps = 111/240 (46%)
Query: 43 KCEFMNPTGSLKD------------RAAWRMIE-------DAETAG--VLKPG-YTIVEP 80
F + G L +AA+ ++ DA AG + G Y
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL---GEYA---- 1768
Query: 81 SSGNTGIGLAMVA---------AIK-----GYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126
A+ + ++ G M V +P Y M A+
Sbjct: 1769 ---------ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN------ 1813
Query: 127 QNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDM- 185
P + A + A Q VV E + + TG V++
Sbjct: 1814 --------PGRVAASFSQEALQ---YVV------------------ERVGKRTGWLVEIV 1844
Query: 186 --------IVLGCGTGGTASGI---GRKIKE-KCPSCKLVGADPFGSILAQPQSLNDVPE 233
V G + + K ++ L + SL +V
Sbjct: 1845 NYNVENQQYVA----AGDLRALDTVTNVLNFIKLQKIDII-------ELQKSLSLEEVEG 1893
Score = 30.4 bits (68), Expect = 1.4
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 37/162 (22%)
Query: 165 LSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224
L+HY TA+ + G ++ G G + G+ V A +A+
Sbjct: 246 LAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGL-------------VTA----VAIAE 285
Query: 225 PQSLNDVPENQISYNEVE-GIGY----SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS 279
S + V IG ++ T+L ++++ + + M
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------- 338
Query: 280 EGLLVGGSSGTA--MHVACQAAKSLRPDQRCVVILADGVRNY 319
L + + +V + L ++ + L +G +N
Sbjct: 339 --LSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNL 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 30/228 (13%), Positives = 61/228 (26%), Gaps = 74/228 (32%)
Query: 221 ILAQPQSLNDV----------PENQISY--NEVEGIGYSFAATTLDRNVIDQWGKCGDKD 268
I+ +++ E + EV I Y F + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTR 110
Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVA--------CQAAKSLRPDQRCVV---------I 311
++ R + L +V+ QA LRP + ++
Sbjct: 111 MYIEQR-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 312 LA-DGVRNY-LTKFISDE--WMIEKGFLDEAEELEEMI----------------HSGTAM 351
+A D +Y + + + W + + E + EM+ HS
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 352 HVACQAAKSLR------PDQRCVVILADGVRNYLTKFISDEWMIEKGF 393
LR P + C+++L + + + F
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLN---------VQNAKAWNA-F 262
Score = 41.0 bits (95), Expect = 8e-04
Identities = 52/360 (14%), Positives = 105/360 (29%), Gaps = 125/360 (34%)
Query: 71 LKPG-YTIVEPSSGNTGIG---LAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126
L+P +++ G G G +A + YK+ M K ++ + L
Sbjct: 147 LRPAKNVLID---GVLGSGKTWVA-LDVCLSYKVQCKMDFK-----IFWLN-LK------ 190
Query: 127 QNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMI 186
+ + PE ++ ++ Q+ + N L + + LR
Sbjct: 191 ----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELR--------- 235
Query: 187 VLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG 245
R +K K +C LV L +V +
Sbjct: 236 --------------RLLKSKPYENCLLV--------------LLNVQNAKA----WN--- 260
Query: 246 YSFA------ATTLDRNVIDQWGKCGDKDTFLMARRLI----KSEGLLVGGSSGTAMHVA 295
+F TT + V D L + + + LL ++
Sbjct: 261 -AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLD 312
Query: 296 CQAAKSLRPDQRC------VVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGT 349
C+ + L P + + I+A+ +R+ L + D W ++L +I S
Sbjct: 313 CR-PQDL-PREVLTTNPRRLSIIAESIRDGLATW--DNWK-----HVNCDKLTTIIES-- 361
Query: 350 AMHVACQAAKSLRPD--QRC---VVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI 404
+ L P ++ + + + T +S W D + ++
Sbjct: 362 -------SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW------FDVIKSDVMVV 407
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 40.6 bits (95), Expect = 5e-04
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 89 LAMVAAIKGYKMVVVMP-MKMSKEKVYT-------MKALGAKIIRTQNDKSYDHPEGMIA 140
+A VAA G K V+V + VY + LGA + +
Sbjct: 84 VAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWED 143
Query: 141 GAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEE---ILRDTGGKVDMIVLGCGTGGTA 196
+ + + + + AEE + G K D +V+ TG T
Sbjct: 144 ALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQ 203
Query: 197 SGIGRKIKEKCPSCKLVGAD 216
+G+ + +++G D
Sbjct: 204 AGMVVGFAADGRADRVIGVD 223
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 40.4 bits (94), Expect = 7e-04
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 1/139 (0%)
Query: 83 GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTM-KALGAKIIRTQNDKSYDHPEGMIAG 141
N + A G ++V+ K + Y + K +G + S++ +
Sbjct: 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEI 140
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
A + + + V+ Y EI + K D IV+ G+GGT +G+
Sbjct: 141 AEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSL 200
Query: 202 KIKEKCPSCKLVGADPFGS 220
+ + VG
Sbjct: 201 GLSILNEDIRPVGIAVGRF 219
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 33.9 bits (78), Expect = 0.091
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 58 AWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV--AAIKGYKMV-VVMPMKMSKEKVY 114
A+ M+ L PG + G + +G + + + V+ E V
Sbjct: 154 AYLMLTHY---VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVA 210
Query: 115 TMKALGA 121
++K LGA
Sbjct: 211 SLKELGA 217
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY
crystallography, putative translation factor, PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: d.115.1.1 PDB: 1kk9_A
Length = 206
Score = 33.2 bits (77), Expect = 0.096
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 168 YETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
E+ EEI +VD+I+ G G +
Sbjct: 153 TESDPEEIKDRLEKQVDLIIHGGYLGQKPT 182
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta
protein, actin-like fold, alternative splicing, calcium,
glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB:
3cj7_A* 3cj9_A* 3cja_A*
Length = 456
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 286 GSSGTAMHV-ACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF---LDEAEE- 340
GSS T+M V A K D ++ + +D + L++A
Sbjct: 42 GSSHTSMFVYKWPADKENDTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRD 101
Query: 341 LEEMIHSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISDEWMIEKGFLDEA 397
+ H+ T +++ A L + +L V LT++ D L
Sbjct: 102 VPRDRHASTPLYLGATAGMRLLNLTSPEATARVLEA-VTQTLTQYPFDFRGAR--ILSGQ 158
Query: 398 EE 399
+E
Sbjct: 159 DE 160
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 32.2 bits (73), Expect = 0.27
Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 40/162 (24%)
Query: 272 MARRLIK---SEG---LLVGGS------------SGTAMHVACQAAKSLRPDQ---RCVV 310
+A + + +LVGGS + V + + S+ + C
Sbjct: 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCF 177
Query: 311 ILADGVRNYLTKFISDEW--MIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCV 368
+ D LT +++ M+E G DE E +
Sbjct: 178 LWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSP-----------EDEDHDEDSATRT 226
Query: 369 VIL-ADGVR---NYLTKFISDEWMIEKGFLDEAEE--LEEMI 404
+ A GV Y KF + E D EE +
Sbjct: 227 GLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAV 268
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 31.7 bits (72), Expect = 0.34
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
LG GTG + + EK P D
Sbjct: 51 LGAGTGLLS----AFLMEKYPEATFTLVDM 76
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 31.0 bits (71), Expect = 0.64
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 329 MIEKGFLDEAEELEEMIHSG-TAM 351
M+ G +E + L E +M
Sbjct: 221 MLGHGLFNEVQHLVEQGFEASQSM 244
Score = 29.1 bits (66), Expect = 2.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 388 MIEKGFLDEAEELEEM 403
M+ G +E + L E
Sbjct: 221 MLGHGLFNEVQHLVEQ 236
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
3cgz_A 3cgy_A
Length = 152
Score = 29.9 bits (68), Expect = 0.71
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 62 IEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95
I ++ + G + G G+GLA+ I
Sbjct: 86 IPLSKREVIFDRGQRVDTLRPG-QGVGLAVAREI 118
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 30.6 bits (69), Expect = 0.87
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 133 DHPE---GMIAGA--HRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIV 187
DH I ++ + D +N + Y + +++ VD+ +
Sbjct: 105 DHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNMVKKYTK-VDIAI 163
Query: 188 LGCGTGG-TAS 197
LG G+ AS
Sbjct: 164 LGMGSDFHIAS 174
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- RNA binding protein;
1.89A {Deinococcus radiodurans}
Length = 535
Score = 30.6 bits (68), Expect = 0.91
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 9/102 (8%)
Query: 279 SEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVIL-ADGVRNYLTKFISDEWMIEKGFLD 336
+ G + G T A + +LR + + + A+ R
Sbjct: 376 TCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-------GITPRDTLES 428
Query: 337 EAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 378
++ + + GT A R D V+ D
Sbjct: 429 AMQKAQSVSFGGTDCAQPILWAAQERLDVDTFVVYTDNETWA 470
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 29.9 bits (67), Expect = 1.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 164 PLSHYETTAEEILRDTGG-KVDMIVL--GCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
LS T E++L VL GCG G + + P ++ D
Sbjct: 17 RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQT----VILAKNNPDAEITSIDISPE 72
Query: 221 ILAQ 224
L +
Sbjct: 73 SLEK 76
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A
{Streptococcus mutans}
Length = 295
Score = 30.0 bits (67), Expect = 1.5
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 170 TTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
E I VD+++ + I
Sbjct: 198 GKVEGIGERIESMVDLVIEA---DDYVASIQ 225
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, carboxylic
ester hydrolase; 2.10A {Mycobacterium smegmatis}
Length = 248
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 167 HYETTAEEILRDTGGKVDMIVLGCGTGG-TAS 197
Y + D+ +LG G G S
Sbjct: 127 GYAQLLSANFDSSVPGFDVHLLGMGGEGHVNS 158
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5
domain, structural genomics, NPPSFA; HET: AMP; 1.80A
{Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Length = 352
Score = 29.5 bits (67), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 170 TTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
T AE+++ D G+VD+I+ G G T G+
Sbjct: 154 TKAEDVIVDLNGRVDVIIDG---GHTFFGV 180
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ A A+ G V+ M V M+ LGA+++
Sbjct: 133 IAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVV 183
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 29.4 bits (67), Expect = 2.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ AM A+ G K+ + M ++ K V+ MK LGA +I
Sbjct: 102 IAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVI 152
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 29.6 bits (67), Expect = 2.2
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 329 MIEKGFLDEAEELEEM--IHSGTAMHVACQAAKSL 361
M+E+G L E ++L E + T + +
Sbjct: 212 MLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVI 246
Score = 28.4 bits (64), Expect = 4.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 388 MIEKGFLDEAEELEEM 403
M+E+G L E ++L E
Sbjct: 212 MLERGALQEIKQLYEY 227
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 2.3
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 25/73 (34%)
Query: 329 MIEKGFLDEAEELEEM--IHSG-TAMHVACQAAKSLRPDQRCVVILADGVR---NYLTKF 382
M+E+GF+ E E L +H+G ++ R V G R +YL
Sbjct: 227 MLEQGFIAEVEALHARSDLHAGLPSI--------------RAV-----GYRQVWDYLDGK 267
Query: 383 ISDEWMIEKGFLD 395
+S M E+G +
Sbjct: 268 LSYAEMTERGIIA 280
Score = 27.5 bits (62), Expect = 7.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 388 MIEKGFLDEAEELEEM 403
M+E+GF+ E E L
Sbjct: 227 MLEQGFIAEVEALHAR 242
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 29.5 bits (67), Expect = 2.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ +A VAA+ G + VV M ++ V+ MK LGA++
Sbjct: 129 IAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVR 179
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.0 bits (66), Expect = 2.9
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)
Query: 288 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISD--EWMIEKGFLDEAEELEEMI 345
SG + Q + P Q +A R L + I M+ GF E L
Sbjct: 178 SGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFAR- 236
Query: 346 HSGTAMHVACQAAKSLRPDQRCVVILADGVR---NYLTKFISDEWMIEKG 392
+H + + + G R +YL IS + M+ +G
Sbjct: 237 ---GDLHTDLPSIRCV------------GYRQMWSYLEGEISYDEMVYRG 271
Score = 28.6 bits (65), Expect = 3.2
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 341 LEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISD--EWMIEKGFLDEAE 398
LE SG + Q + P Q +A R L + I M+ GF E
Sbjct: 172 LEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVR 231
Query: 399 ELEEM 403
L
Sbjct: 232 ALFAR 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.0 bits (66), Expect = 3.0
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 329 MIEKGFLDEAEELEEM-IHSGTAM 351
M+E+G +DEA++L + I ++
Sbjct: 215 MVEEGLIDEAKKLYDRGIRDCQSV 238
Score = 28.6 bits (65), Expect = 3.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 388 MIEKGFLDEAEELEEM 403
M+E+G +DEA++L +
Sbjct: 215 MVEEGLIDEAKKLYDR 230
>3qi7_A Putative transcriptional regulator; periplasmic binding
protein-like, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Length = 371
Score = 28.6 bits (63), Expect = 4.3
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 161 PNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
P N S+ ++ +I++ K V IV+ G + +K+KEK P + A
Sbjct: 65 PENFTSNIDSAINKIVKLADDKEVQAIVVSTDQAGLLPAL-QKVKEKRPEIITISAPM 121
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 28.6 bits (65), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVM---PMKMSKEKVYTMKALGAKII 124
I E +G G+ A+ +A+ G K + M ++ V+ M+ +GA++I
Sbjct: 106 IAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVI 156
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5,
PSI, protein structure initiative, midwest center for
structural genomics; 2.00A {Escherichia coli} SCOP:
d.115.1.1
Length = 188
Score = 27.5 bits (62), Expect = 5.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 170 TTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
T +E+ G ++ G S I
Sbjct: 149 RTVDEVRAQFGAAFPVVPGETGGRLNPSEI 178
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 28.3 bits (62), Expect = 6.2
Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 7/112 (6%)
Query: 278 KSEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD 336
S V GS A VA R ++ ++ + + + +
Sbjct: 379 ASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFS------DEMLPCPITVNMLLHE 432
Query: 337 EAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM 388
E++ ++ T + A+ ++ D N +
Sbjct: 433 VVEKMSDITMGSTDCALPMLWAQKTNTAADIFIVFTDCETNVEDVHPATALK 484
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 27.9 bits (62), Expect = 6.3
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 169 ETTAEEILRDTGGKVDMIVL--GCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ 226
E T + + ++ GCGTGG + ++ G D +
Sbjct: 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQT----MVLAGHVT-GQVTGLDFLSGFIDIFN 86
Query: 227 SLNDVP--ENQISYNEVEGIGYSFAATTLDRNVIDQWGKC--GDKDTFLMARRLIKSEGL 282
+N+++ F LD + + G + R+ +K G
Sbjct: 87 RNARQSGLQNRVTGIVGSMDDLPFRNEELDL-IWSEGAIYNIGFERGLNEWRKYLKKGGY 145
Query: 283 LV 284
L
Sbjct: 146 LA 147
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 27.7 bits (61), Expect = 6.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ 224
+ CG + CP +LVG D L
Sbjct: 125 VPCGWMSELLALDYS---ACPGVQLVGIDYDPEALDG 158
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 25.7 bits (57), Expect = 7.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 197 SGIGRKIKEKCPSC 210
G G IK+ C C
Sbjct: 57 QGRGTLIKDPCNKC 70
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 27.5 bits (62), Expect = 8.0
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 117 KALGAKIIRTQNDKSYDH-PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI 175
GA++ + +H EGM+ I + V + NPNNP +Y +I
Sbjct: 126 LIEGAEVREIPLLQDGEHDLEGMLN---AIDEKTT-IVWIC---NPNNPTGNY-IELADI 177
Query: 176 LR 177
Sbjct: 178 QA 179
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 27.6 bits (62), Expect = 8.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 287 SSGTAMHVACQAAKSLRPDQRCVVILADGV 316
S TA+H+A ++ LR D+ C + LA GV
Sbjct: 201 SGLTALHLAMES---LRRDE-CGLALAGGV 226
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 27.6 bits (62), Expect = 8.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 287 SSGTAMHVACQAAKSLRPDQRCVVILADGV 316
SS A+H+A ++ LR + + + G
Sbjct: 179 SSLVALHLAVES---LRKGE-SSMAVVGGA 204
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 27.4 bits (60), Expect = 8.8
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 172 AEEILRDTGGKVDMIVL--GCGTGGTASGIGRKIKEKCPS--CKLVGADP 217
I R K ++ +L G G G I K++ + P +P
Sbjct: 41 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP 90
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 27.3 bits (60), Expect = 8.9
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL 228
+GCG G ++ + ++ S + G D P +L
Sbjct: 50 IGCGQGDLSAVLADQVG---SSGHVTGIDIASPDYGAPLTL 87
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima}
SCOP: c.124.1.1 PDB: 1pbt_A
Length = 232
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 172 AEEILRDTGGKVDMIVLGCGTGG-TAS 197
E +R + D+ +LG G G AS
Sbjct: 127 YEREIRSATDQFDLAILGMGPDGHVAS 153
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 27.5 bits (62), Expect = 9.2
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 112 KVYTMKALGAKIIRTQNDKSYDH-PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYET 170
+ + K G K+ + + ++ EG+ A +A+ ++V NPNNP T
Sbjct: 106 EHFA-KIAGMKVTKVKMLDNWAFDIEGLKA---AVAAYSGPSIVY--LVNPNNPTGTI-T 158
Query: 171 TAEEILR 177
A+ I
Sbjct: 159 PADVIEP 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,410,477
Number of extensions: 406578
Number of successful extensions: 1649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1579
Number of HSP's successfully gapped: 107
Length of query: 404
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 308
Effective length of database: 4,021,377
Effective search space: 1238584116
Effective search space used: 1238584116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)