RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14801
(404 letters)
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 246 bits (629), Expect = 2e-79
Identities = 171/316 (54%), Positives = 228/316 (72%), Gaps = 5/316 (1%)
Query: 22 GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G P++ +K G + AKCEF N GS+KDR + RMIEDAE G LKPG TI+E
Sbjct: 43 GDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIE 102
Query: 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
P+SGNTGIGLA+ AA++GY+ ++VMP KMS EKV ++ALGA+I+RT + +D PE +
Sbjct: 103 PTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHV 162
Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
A R+ +++ N+ +LDQ+RN +NPL+HY+TTA+EIL+ GK+DM+V GTGGT +GI
Sbjct: 163 GVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGI 222
Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
RK+KEKCP C+++G DP GSILA+P+ LN + EVEGIGY F T LDR V+D
Sbjct: 223 ARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTY---EVEGIGYDFIPTVLDRTVVD 279
Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319
+W K D++ F AR LI EGLL GGS+G+ + VA +AA+ L+ QRCVVIL D VRNY
Sbjct: 280 KWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNY 339
Query: 320 LTKFISDEWMIEKGFL 335
+TKF+SD WM++KGFL
Sbjct: 340 MTKFLSDRWMLQKGFL 355
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 207 bits (526), Expect = 2e-64
Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 13/317 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
G PL+ + + AK E M P S+KDR + MI DAE G++KPG ++EP
Sbjct: 12 GNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEP 71
Query: 81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
+SGNTG+GLA AA KGYK+++ MP MS E+ + A G +++ T K
Sbjct: 72 TSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA- 130
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
I ++ N +L QF NP NP HYETT EI + TGGK+D V G GTGGT +G G
Sbjct: 131 --EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAG 188
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
+ +KE+ + KL G +P S + + + ++++GIG F + L+ ++ID+
Sbjct: 189 KYLKEQNANVKLYGVEPVESAI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADGVRNY 319
+ ++ MAR+L EGLLVG SSG A A + A + + V I Y
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 300
Query: 320 LTKFISDEWMIEKGFLD 336
L+ + D E +
Sbjct: 301 LSTVLFDATRKEAEAMT 317
Score = 44.9 bits (105), Expect = 9e-06
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF--LDEAEEL--EEM 344
G + + + I A + + L + DE + +D A +L +E
Sbjct: 202 GVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEG 261
Query: 345 IH----SGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD 395
+ SG A A + A + + V I YL+ + D E +
Sbjct: 262 LLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMT 317
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 197 bits (502), Expect = 3e-61
Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 19/302 (6%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G P++ S + K E NP GS+KDR A MI DAE G+LK G IVEP+
Sbjct: 9 GSTPIVRLDSIDSRIF----LKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPT 62
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGN GI +AM+ A +G+++++ MP MS E+ +K LGA+++ T + +
Sbjct: 63 SGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG---AVEK 119
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
A I+ + A +L+QF NP N SH TT EIL+ ++D V G GTGGT SG+GR
Sbjct: 120 ALEISRE-TGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 178
Query: 202 KIKEKCP-SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
+K K+V +P S + + Q + ++GIG F LDR+VID+
Sbjct: 179 VLKGFFGNGVKIVAVEPAKSPV--------LSGGQPGKHAIQGIGAGFVPKILDRSVIDE 230
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
D++ + MAR L K EGLLVG SSG + A + A+ L PD R V + D YL
Sbjct: 231 VITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 290
Query: 321 TK 322
+
Sbjct: 291 SI 292
Score = 41.6 bits (97), Expect = 9e-05
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 33/156 (21%)
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
NV G + M ++ + + G +G + + K + +V +
Sbjct: 140 NVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPA 196
Query: 316 VRNYLTKFISDEWMIE------------KGFLDEA-----EELEEMIH------------ 346
L+ + I+ + +DE EE EM
Sbjct: 197 KSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGI 256
Query: 347 -SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381
SG + A + A+ L PD R V + D YL+
Sbjct: 257 SSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSI 292
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 191 bits (485), Expect = 2e-58
Identities = 107/308 (34%), Positives = 152/308 (49%), Gaps = 14/308 (4%)
Query: 22 GKVPLLP---QSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV 78
G PL+ G++++ K E NP+ S+K R M+ AE G L G IV
Sbjct: 11 GNTPLVRLKHFGHNGNVVV-----KIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIV 65
Query: 79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
+ +SGNTGI LA VAA +GYK+ + MP MS E+ + LG ++ + + +
Sbjct: 66 DATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLV--LTEGAKGMKGAI 123
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
+AS V+L QF NP NP H ETT EI +DT GKVD++V G GTGG+ +G
Sbjct: 124 AKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITG 183
Query: 199 IGRKIKE-KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
I R IK V +P S + + E + ++++GIG F LD ++
Sbjct: 184 ISRAIKLDFGKQITSVAVEPVESPVISQTLAGE--EVKPGPHKIQGIGAGFIPKNLDLSI 241
Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGV 316
ID+ ARRL+ EG+L G SSG A+ A + AK D+ VVIL
Sbjct: 242 IDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSAS 301
Query: 317 RNYLTKFI 324
YL+ +
Sbjct: 302 ERYLSTAL 309
Score = 35.7 bits (81), Expect = 0.006
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 347 SGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFI 383
SG A+ A + AK D+ VVIL YL+ +
Sbjct: 272 SGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTAL 309
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 190 bits (484), Expect = 2e-58
Identities = 113/301 (37%), Positives = 170/301 (56%), Gaps = 14/301 (4%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY--TIVE 79
GK P++ +K + K E +NP GS+KDR AW MI+DAE G+L+PG IVE
Sbjct: 8 GKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVE 67
Query: 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
P+SGNTGIGLAM+AA +GY++++ MP +MS+E+ +KA GA+++ T ++
Sbjct: 68 PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE- 126
Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
+ A + DQF+NP N +HYETT E+ G++D V G GTGGT +G+
Sbjct: 127 ---ALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGV 183
Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
GR +KE+ P K++ +P N + ++ + +G+G F LD +++D
Sbjct: 184 GRYLKERIPHVKVIAV--------EPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLD 235
Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319
+ ++D F +ARRL + EGL +G SSG + A Q A+ L P +R I DG Y
Sbjct: 236 GVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKY 295
Query: 320 L 320
L
Sbjct: 296 L 296
Score = 37.2 bits (85), Expect = 0.002
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 379
SG + A Q A+ L P +R I DG YL
Sbjct: 264 SGGIVWAALQVARELGPGKRVACISPDGGWKYL 296
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 187 bits (476), Expect = 3e-57
Identities = 107/296 (36%), Positives = 154/296 (52%), Gaps = 10/296 (3%)
Query: 22 GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
G PL+ ++ G IL K E NP+ S+K R MI DAE GVLKPG +VE
Sbjct: 12 GHTPLVRLNRIGNGRILA-----KVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66
Query: 80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
P++GNTGI LA VAA +GYK+ + MP MS E+ +KALGA ++ T+ +
Sbjct: 67 PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQ 124
Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
+AS + ++L QF NP NP H +TT EI DT G+VD+ + G GTGGT +G+
Sbjct: 125 KAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGV 184
Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
R IK L+ + E + ++++GIG F LD +ID
Sbjct: 185 TRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLID 244
Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILAD 314
+ +++ ARRL++ EG+L G SSG A+ A + + ++ VVIL
Sbjct: 245 KVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPS 300
Score = 27.6 bits (60), Expect = 2.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 347 SGTAMHVACQAAKSLR-PDQRCVVILAD 373
SG A+ A + + ++ VVIL
Sbjct: 273 SGAAVAAALKLQEDESFTNKNIVVILPS 300
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 169 bits (428), Expect = 2e-50
Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 20/299 (6%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
G PL+ + G K E NP GS+KDRAA MI +AE G +KPG ++E +
Sbjct: 8 GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 67
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGNTGI LAM+AA+KGY+M ++MP MS+E+ M+A GA++I ++ + +
Sbjct: 68 SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALE 127
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
DQF NP+NP +HY TT EI + TGG++ V GT GT +G+ R
Sbjct: 128 MANRGEGKLL----DQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSR 183
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
++E+ +VG PE S + + + +++D+
Sbjct: 184 FMREQSKPVTIVGLQ---------------PEEGSSIPGIRRWPTEYLPGIFNASLVDEV 228
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
+D R L EG+ G SSG A+ A + AK PD V I+ D YL
Sbjct: 229 LDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK-ANPDAVVVAIICDRGDRYL 286
Score = 35.7 bits (81), Expect = 0.008
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
G + G S L+P++ + I + ++++ +
Sbjct: 176 GTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRD 235
Query: 341 LEEMIH-------------SGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 379
E + SG A+ A + AK PD V I+ D YL
Sbjct: 236 AENTMRELAVREGIFCGVSSGGAVAGALRVAK-ANPDAVVVAIICDRGDRYL 286
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 164 bits (416), Expect = 1e-47
Identities = 52/284 (18%), Positives = 99/284 (34%), Gaps = 21/284 (7%)
Query: 42 AKCEFMNPTG-SLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100
K E+ NP S+KDR A +I ++ G + + +S N G+ L+ VA + GY+
Sbjct: 113 LKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGSLVADATSSNFGVALSAVARLYGYRA 170
Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
V +P + + LGA++I S H + + + +
Sbjct: 171 RVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANF 230
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
+ + R G + + GT G S ++ PS + V
Sbjct: 231 EAHMRGTAREIFVQ-SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQ---- 285
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
P S + + + ++ + ++ + +S+
Sbjct: 286 -----------PAQGDSIPGIRRVETGMLWINML-DISYTLAEVTLEEAMEAVVEVARSD 333
Query: 281 GLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKF 323
GL++G S G A+ + AA+ VV++ D YL+
Sbjct: 334 GLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLV 377
Score = 34.4 bits (78), Expect = 0.023
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 22/116 (18%)
Query: 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL-----EE 343
M A +S+ P R V++ + + M+ LD + L EE
Sbjct: 262 SGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLEE 321
Query: 344 MIH----------------SGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKF 382
+ G A+ + AA+ VV++ D YL+
Sbjct: 322 AMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLV 377
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 126 bits (318), Expect = 5e-34
Identities = 56/300 (18%), Positives = 109/300 (36%), Gaps = 20/300 (6%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
K P+L S + KCE G+ K R A + A + ++ S
Sbjct: 20 NKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEA---QRKAGVLTFS 76
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGN +A+ A I G ++MP+ + KV K G ++I K
Sbjct: 77 SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKM----- 131
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
A I+ + + ++ + +P+ E L + G +D + + G GG SG
Sbjct: 132 AKEISER-EGLTIIPPYDHPHVLAGQGTAAKE--LFEEVGPLDALFVCLGGGGLLSGSAL 188
Query: 202 KIKEKCPSCKLVGADP------FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
+ P+C++ G +P S D P+ + + +G ++ +
Sbjct: 189 AARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLG--NYTFSIIK 246
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
+D D++ + ++V + + A + L ++R +I++ G
Sbjct: 247 EKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL-KNKRIGIIISGG 305
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 124 bits (312), Expect = 4e-33
Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 16/279 (5%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E P S K R A+ M+ + ++ S+GN G+A +A G K +
Sbjct: 46 VKREDRQPVHSFKLRGAYAMMAGLTEEQ---KAHGVITASAGNHAQGVAFSSARLGVKAL 102
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
+VMP + KV ++ G +++ + SQ + + F +P
Sbjct: 103 IVMPTATADIKVDAVRGFGGEVLL------HGANFDEAKAKAIELSQQQGFTWVPPFDHP 156
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP-FGS 220
+ T L +D + + G GG A+G+ IK+ P K++ + +
Sbjct: 157 MVI--AGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 214
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLI 277
L + EG+ L + +D + L
Sbjct: 215 CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLF 274
Query: 278 KSEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADG 315
+ + S A+ + A +R IL+
Sbjct: 275 EDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGA 313
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 118 bits (295), Expect = 1e-30
Identities = 49/293 (16%), Positives = 86/293 (29%), Gaps = 21/293 (7%)
Query: 42 AKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
AK E N + K R +I +A G + N +A VAA G
Sbjct: 36 AKREDCNSGLAFGGNKTRKLEYLIPEALAQG--CDTLVSIGGIQSNQTRQVAAVAAHLGM 93
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG-------MIAGAHRIASQMKN 151
K V+V ++ + ++ R P+G A
Sbjct: 94 KCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGG 153
Query: 152 AVVLDQFRNPNNPLSHYETTAEEI-----LRDTGGKVDMIVLGCGTGGTASGIGRKIKEK 206
++PL + G K D +V+ TG T +G+
Sbjct: 154 KPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAAD 213
Query: 207 CPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGD 266
+ +++G D + + + +E A LD +
Sbjct: 214 GRADRVIGVDASAKPAQTREQITRIARQTAEKVGLER-DIMRADVVLDERFAGPEYGLPN 272
Query: 267 KDTFLMARRLIKSEGLLVG-GSSGTAMHVACQAAKS--LRPDQRCVVILADGV 316
+ T R ++EG+L G +MH + ++ R + GV
Sbjct: 273 EGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGV 325
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 106 bits (264), Expect = 4e-26
Identities = 56/306 (18%), Positives = 103/306 (33%), Gaps = 40/306 (13%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E + G+ K A A+ G + I E +G G+ AM A+ G K+
Sbjct: 70 LKREDLVHGGAHKTNNAIGQALLAKFMGKTR---LIAETGAGQHGVATAMAGALLGMKVD 126
Query: 102 VVMP---MKMSKEKVYTMKALGAKIIR----TQNDKSYDHPEGMIAGAHRIASQMKNAVV 154
+ M ++ K V+ MK LGA +I ++ K + A + V
Sbjct: 127 IYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSV 186
Query: 155 LDQFRNPNNPLSHYETTAEEI---LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCK 211
+ P E + + G++ +++ C GG+ + K
Sbjct: 187 VGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVK 246
Query: 212 LVGADPFGSILAQPQSLNDV-------------------------PENQISYNEVEGIGY 246
LVG + G L + + + + G+G
Sbjct: 247 LVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGP 306
Query: 247 SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQ 306
A L + ++ D++ L ++EG++ S A+ A + AK + D+
Sbjct: 307 EHAY--LKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDE 364
Query: 307 RCVVIL 312
+V L
Sbjct: 365 IIIVNL 370
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 106 bits (264), Expect = 1e-25
Identities = 48/346 (13%), Positives = 95/346 (27%), Gaps = 34/346 (9%)
Query: 22 GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
G L + G L D K ++ TGS KD ++ +K +
Sbjct: 120 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 179
Query: 79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
S+G+T L+ A G +V +P + A + +
Sbjct: 180 CASTGDTSAALSAYCASAGIPSIVFLPANKISMA--QLVQPIANGAFVLSIDTDFDGCMK 237
Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
+ + + L N E + + D +++ G G
Sbjct: 238 LIREI----TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYA 293
Query: 199 IGRKIKEKC--------PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
+ K P A + +S + +
Sbjct: 294 FYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDP 353
Query: 251 TTLDRNVIDQWGKCG-----DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LR 303
++DR V G ++ + A S G+ + +G A+ + +
Sbjct: 354 VSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIA 413
Query: 304 PDQRCVVIL-------ADGVRNYLTKFISDEWMIEKGFLDEAEELE 342
P R VV+ +Y + I D + F + +++
Sbjct: 414 PTDRTVVVSTAHGLKFTQSKIDYHSNAIPD---MACRFSNPPVDVK 456
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 102 bits (254), Expect = 4e-25
Identities = 52/300 (17%), Positives = 91/300 (30%), Gaps = 25/300 (8%)
Query: 22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
+ PLL +L K E + TGS K R A E ++ S
Sbjct: 18 HRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE------NPKGLLAVS 71
Query: 82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
SGN G+A A + G K +VVMP S K + + +
Sbjct: 72 SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACA-----RAYGAEVVDRGVTAKNREEV 126
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI--LRDTGGKVDMIVLGCGTGGTASGI 199
A + + ++ F +P E + G ++ G GG +G+
Sbjct: 127 ARALQEE-TGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGL 185
Query: 200 GRKIKEKCPSCKLVGADPF-------GSILAQPQSLNDVPENQISYNEVEGIGYSFAATT 252
+K P+ ++G +P + L P + +G
Sbjct: 186 ATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFP-- 243
Query: 253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL 312
+ R +D ++ R L +V + + + R Q ++L
Sbjct: 244 ILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGA--RLPQTLALLL 301
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 102 bits (254), Expect = 5e-25
Identities = 46/296 (15%), Positives = 82/296 (27%), Gaps = 26/296 (8%)
Query: 42 AKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
AK E N + K R ++ D + N +A +AA G
Sbjct: 36 AKREDCNSGLAFGGNKLRKLEYIVPDIVEGD--YTHLVSIGGRQSNQTRMVAALAAKLGK 93
Query: 99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH------------PEGMIAGAHRIA 146
K V++ + + I D A
Sbjct: 94 KCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELED 153
Query: 147 SQMKNAVVLDQFRNPNNPLSHYETTAE---EILRDTGGKVDMIVLGCGTGGTASGIGRKI 203
+ K + + A+ + G K D IV+ C TG T +GI +
Sbjct: 154 AGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGM 213
Query: 204 KEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGK 263
+ ++ D + + + ++ G+ + F TLD
Sbjct: 214 AQYGRQDDVIAIDASFTSEKTKE---QTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYG 270
Query: 264 CGDKDTFLMARRLIKSEGLLVG-GSSGTAMHVACQAAKS--LRPDQRCVVILADGV 316
++ T R + EG+L G +M K +P + + G
Sbjct: 271 VPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGA 326
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 102 bits (253), Expect = 7e-25
Identities = 56/307 (18%), Positives = 89/307 (28%), Gaps = 24/307 (7%)
Query: 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
TP +P K P + K + K E +NPTGS KDR + A G
Sbjct: 29 TPLIPLKGPEEARKKGIRLYA-----KYEGLNPTGSFKDRGMTLAVSKAVEGG----AQA 79
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
+ S+GNT A AA G +VV+P +
Sbjct: 80 VACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQ-------SLVHGARIVQVEG 132
Query: 137 GMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTA 196
+ V + L +T A E++ + G L G G
Sbjct: 133 NFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192
Query: 197 SGIGRKIKEKC------PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
+ K +++G G+ + PE + + A
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252
Query: 251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRC 308
D++ R L + EG+ +S AM + + L P+
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312
Query: 309 VVILADG 315
V+ L
Sbjct: 313 VLTLTGH 319
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 99.4 bits (246), Expect = 4e-24
Identities = 45/304 (14%), Positives = 95/304 (31%), Gaps = 18/304 (5%)
Query: 17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMN--PTGSLKDRAAWRMIEDAETAGVLKPG 74
TP +P + + + + K + + G K R ++ DA + G
Sbjct: 22 TPIQ--YLPNISREIGADVYI-----KRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN-DKSYD 133
V N + A G ++V+ K + Y + + R + S++
Sbjct: 75 --TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFE 132
Query: 134 HPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
+ A + + + V+ Y EI + K D IV+ G+G
Sbjct: 133 LMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSG 192
Query: 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253
GT +G+ + + VG + E+ G+
Sbjct: 193 GTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTS---KLDNLIKEAAELLGVKVEVRP--E 247
Query: 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLRPDQRCVVIL 312
+ + + R++ EG+++ +G A + A+ ++ + I
Sbjct: 248 LYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIH 307
Query: 313 ADGV 316
G+
Sbjct: 308 TGGI 311
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 85.6 bits (210), Expect = 3e-19
Identities = 39/286 (13%), Positives = 73/286 (25%), Gaps = 21/286 (7%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K + P+GS K R + G V S+GN G+ A + +
Sbjct: 26 LKMDSAQPSGSFKIRGIGHFCKRWAKQGCA----HFVCSSAGNAGMAAAYA-----ARQL 76
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
V + + K + + A +A V + F +P
Sbjct: 77 GVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDP 136
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
H E + + G G + + ++ + FG+
Sbjct: 137 LIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAH 196
Query: 222 LAQPQSLNDVPEN----QISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
+ + + A L + D++ + +
Sbjct: 197 SFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFV 256
Query: 278 KSEGLLVGGSSGTAMHVACQAA--------KSLRPDQRCVVILADG 315
E +LV + G A+ P VVI+ G
Sbjct: 257 DDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGG 302
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 83.0 bits (204), Expect = 5e-18
Identities = 39/300 (13%), Positives = 84/300 (28%), Gaps = 30/300 (10%)
Query: 42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
K E + G+ K A+ G + G + + +K +
Sbjct: 74 LKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYM 133
Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ----MKNAVVLDQ 157
++ V+ M+ +GA++I + + A S
Sbjct: 134 GAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGP 193
Query: 158 FRNPNNPLSHYETTAEEI---LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
P EE + D G++ V+ C GG+ + S L+G
Sbjct: 194 HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIG 253
Query: 215 ADPFGSILAQPQS-------LNDVPENQISYNEVEGIGYSFAATT--------------- 252
+P G + + + + G + +
Sbjct: 254 VEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHA 313
Query: 253 -LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVI 311
L+ + D + + L + EG++ S A+ A + + ++ +V+
Sbjct: 314 YLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
[TaxId: 562]}
Length = 428
Score = 33.6 bits (76), Expect = 0.040
Identities = 40/288 (13%), Positives = 77/288 (26%), Gaps = 28/288 (9%)
Query: 43 KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
F PT + KD R + T TI+ +SG+TG + A G V
Sbjct: 96 LELFHGPTLAFKDFGG-RFMAQMLTHIAGDKPVTILTATSGDTGAA--VAHAFYGLPNVK 152
Query: 103 VMPM----KMSKEKVYTMKALGAKIIRTQNDKSYDH-PEGMIAGAHRIASQMKNAVVLDQ 157
V+ + K+S + LG I D +D + ++ +
Sbjct: 153 VVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSAN 212
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
N + L+ E + + + +V+ +G + +
Sbjct: 213 SINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKR---F 269
Query: 218 FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ--------------WGK 263
+ + + Q S + + + N
Sbjct: 270 IAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYA 329
Query: 264 CGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVI 311
D +T R +K G + A L P + + +
Sbjct: 330 AVDDETTQQTMRELKELGYTSEPHAAVAYRA---LRDQLNPGEYGLFL 374
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 32.1 bits (72), Expect = 0.064
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 284 VGGSSGTAMHVAC-QAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELE 342
V GS A VA R ++ ++ + + + + + E++
Sbjct: 22 VLGSILNASVVAAAMCMLVARTEKDSHMV------AFSDEMLPCPITVNMLLHEVVEKMS 75
Query: 343 EMIHSGTAMHVACQAAKSLRPDQRCVVILADG 374
++ T + A+ ++ D
Sbjct: 76 DITMGSTDCALPMLWAQKTNTAADIFIVFTDC 107
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 32.0 bits (73), Expect = 0.073
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 339 EELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 398
+E++ H M + AKSL+ D R R + TK + + +GF DE E
Sbjct: 57 ALMEQVAHQTIVMQFILELAKSLKVDPR------ACFRQFFTKIKTADRQYMEGFNDELE 110
Query: 399 ELEEMI 404
+E +
Sbjct: 111 AFKERV 116
Score = 26.6 bits (59), Expect = 4.2
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHS 347
M + AKSL+ D R R + TK + + +GF DE E +E +
Sbjct: 66 TIVMQFILELAKSLKVDPR------ACFRQFFTKIKTADRQYMEGFNDELEAFKERVRG 118
>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase
CheR, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 193
Score = 32.1 bits (72), Expect = 0.074
Identities = 13/120 (10%), Positives = 26/120 (21%), Gaps = 10/120 (8%)
Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
FR H+ AE R G+ + TG I + + A
Sbjct: 6 FREA----HHFPILAEHARR-RHGEYRVWSAAASTGEEPYSIAITLADALGM-----APG 55
Query: 218 FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
+ A + + + + + + G +
Sbjct: 56 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYV 115
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 29.6 bits (65), Expect = 0.56
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 2/134 (1%)
Query: 152 AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIV-LGCGTGGTASGIGRKIKEKCPSC 210
A + D+ + + E + D + L CGTG + K K
Sbjct: 7 AHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVD 66
Query: 211 KLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF 270
L + + + T + K F
Sbjct: 67 -LSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYF 125
Query: 271 LMARRLIKSEGLLV 284
+K G+ +
Sbjct: 126 KAVSNHLKEGGVFI 139
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 291 AMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTA 350
A+ + ++L D V +L V + + I +I G ++ EE E++ +A
Sbjct: 104 AVERGIEQIETLGVD--VVEVLPGAVAPKVARKIPGRTVIAAGLVETEEEAREILKHVSA 161
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 28.6 bits (63), Expect = 1.2
Identities = 13/113 (11%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF-LDEAEE 340
L +G G + + + + + + + + +E +
Sbjct: 75 LEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134
Query: 341 LEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI--SDEWMIEK 391
+ ++ TA + C+ + L+ ++ + G L K I + +E
Sbjct: 135 YDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGNSPSLEN 187
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 27.4 bits (60), Expect = 2.4
Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 155 LDQFRNPNNPLSHYETTAE---------EILRDTGGKVDMIVLGCGTGGTASGIGRKIKE 205
L Q N N L Y T A + GG+ +I G G G A G
Sbjct: 14 LQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGR-SVIDAGTGNGILACGS---YLL 69
Query: 206 KCPSCKLVGADPFGSILAQ 224
S DP A+
Sbjct: 70 GAESVTAFDIDPDAIETAK 88
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 27.5 bits (60), Expect = 2.6
Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 12/106 (11%)
Query: 77 IVEPSSGNTGIGLAMVAAIKGYKMVVV------MPMKMSKEKVYTMKALGAKIIRTQNDK 130
+ SSG G A GY ++ + P + AL
Sbjct: 40 LDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLL 99
Query: 131 SYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL 176
S + E + G + A L TT + L
Sbjct: 100 SLEAEENALPGFAEALRSYQEAAA------AGTFLVVEFTTLADYL 139
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 27.1 bits (59), Expect = 3.8
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 188 LGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS 247
GCG G + + E K G D ++LA+ + L + + E +
Sbjct: 34 YGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 90
Query: 248 FAATTLDRNVIDQWGKCGDKDTFLM-ARRLIKSEGLLV 284
+T L +K G ++
Sbjct: 91 LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 25.9 bits (56), Expect = 6.1
Identities = 9/97 (9%), Positives = 20/97 (20%), Gaps = 5/97 (5%)
Query: 309 VVILADG----VRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPD 364
VI D V + + G L+ E + + +
Sbjct: 8 AVIEQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG 66
Query: 365 QRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELE 401
++G F + + +
Sbjct: 67 IYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVR 103
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 25.9 bits (56), Expect = 6.7
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 303 RPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIH 346
R +V + L + + + + G ++ E EE IH
Sbjct: 17 RYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAIH 60
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.0 bits (56), Expect = 6.9
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 82 SGNTGIGLAMVAAIKGYKMVVV--MPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
G G G+A VAA G+ +V+V ++K K ++L + + E +
Sbjct: 12 GGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE 71
Query: 140 AGAHRIASQMKNAVVL 155
IA+ A V+
Sbjct: 72 KTLSTIATSTDAASVV 87
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 25.6 bits (56), Expect = 8.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 62 IEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95
+ + E V + S +G+GLA+VA
Sbjct: 87 VPEGERQVVFERFSRGSTASHSGSGLGLALVAQQ 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,541,888
Number of extensions: 73975
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 51
Length of query: 404
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,213,086
Effective search space: 384548262
Effective search space used: 384548262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)