BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14809
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1 OS=Xenopus laevis GN=pif1 PE=2 SV=1
Length = 635
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 1 MLRRNIDVSMGLVNGS--IVYDLE------------CVTTK--------FEVLPRAYVHR 38
ML +N+DVS GLVNG+ +V E C T+ F+ Y+ R
Sbjct: 483 MLAKNLDVSRGLVNGARGVVIKFEEGNKNLPVVRFLCGVTEVIKPDRWVFKGHGGIYLSR 542
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L L +AI+IHK QG+S++ + + S VF GQAYVALS
Sbjct: 543 QQLPLKLAWAISIHKSQGMSLDCVEISL-SRVFESGQAYVALS 584
>sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1 OS=Danio rerio GN=pif1 PE=2 SV=1
Length = 639
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 1 MLRRNIDVSMGLVNGS--IVYDLE----------CVTTKFEVLPRA----------YVHR 38
ML +N+DV GLVNG+ +V D + + EV+ R Y+ R
Sbjct: 482 MLTKNLDVQRGLVNGARGVVVDFQPGNQGLPRVRFLCGAVEVMKRERWMFKAPGGLYLSR 541
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L L +AI+IHK QG++++ + + + VF GQAYVALS
Sbjct: 542 QQLPLKLAWAISIHKSQGMTLDCVEISL-ARVFESGQAYVALS 583
>sp|Q80SX8|PIF1_MOUSE ATP-dependent DNA helicase PIF1 OS=Mus musculus GN=Pif1 PE=1 SV=2
Length = 650
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 1 MLRRNIDVSMGLVNGS--IVYDLE------------CVTTKF--------EVLPRAYVHR 38
ML +N+ VS GLVNG+ +V E C T+ +V Y+ R
Sbjct: 491 MLVKNLAVSRGLVNGARGVVVGFESEGRGLPRVRFLCGITEVIRTDRWTVQVTGGQYLSR 550
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L L +AI+IHK QG+S++ + +G VF+ GQAYVALS
Sbjct: 551 QQLPLQLAWAISIHKSQGMSLDCVEISLG-RVFASGQAYVALS 592
>sp|Q1HG60|PIF1_RAT ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus GN=Pif1 PE=2
SV=1
Length = 637
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 1 MLRRNIDVSMGLVNGS--IVYDLE------------CVTTKF--------EVLPRAYVHR 38
ML +N+ VS GLVNG+ +V E C T+ +V Y+ R
Sbjct: 478 MLVKNLAVSRGLVNGARGVVVGFESEGRGLPRVRFLCGITEVIRTDRWTVQVTGGQYLSR 537
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L L +A++IHK QG+S++ + +G VF+ GQAYVALS
Sbjct: 538 QQLPLQLAWAMSIHKSQGMSLDCVEISLG-RVFASGQAYVALS 579
>sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2
Length = 641
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 23/103 (22%)
Query: 1 MLRRNIDVSMGLVNGS--IVYDLE------------CVTTKFEVLPRAYVH--------R 38
ML +N+ VS GLVNG+ +V E C T+ R V R
Sbjct: 482 MLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWTVQATGGQLLSR 541
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L L +A++IHK QG++++ + +G VF+ GQAYVALS
Sbjct: 542 QQLPLQLAWAMSIHKSQGMTLDCVEISLG-RVFASGQAYVALS 583
>sp|Q9UUA2|PIF1_SCHPO DNA repair and recombination protein pif1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pif1 PE=1 SV=1
Length = 805
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 31 LPRAYVH--REQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALSSQNT 85
LP V R Q L L YAI+IHK QG +++ +D+G VF GQAYVALS T
Sbjct: 699 LPNGEVQASRSQIPLILAYAISIHKAQGQTLDRVKVDLG-RVFEKGQAYVALSRATT 754
>sp|Q196V4|VF030_IIV3 Uncharacterized protein 106R OS=Invertebrate iridescent virus 3
GN=IIV3-106R PE=3 SV=1
Length = 473
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALSSQNT 85
Q L + YA+TIH CQGL+++ A++D+ + F GQAY ALS T
Sbjct: 403 QIPLKIAYALTIHSCQGLTIDYAIIDL-NDCFEFGQAYTALSRVKT 447
>sp|Q9QSK3|VF030_IIV6 Uncharacterized protein 030L OS=Invertebrate iridescent virus 6
GN=IIV6-030L PE=3 SV=1
Length = 530
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 39 EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+Q L + YA+TIH CQG ++++A +D+ S F GQ Y ALS
Sbjct: 435 KQIPLKIAYALTIHSCQGSTLDSAEVDL-SDTFEHGQVYTALS 476
>sp|P07271|PIF1_YEAST DNA repair and recombination protein PIF1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PIF1 PE=1
SV=2
Length = 859
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 RAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+ V R Q L L ++++IHK QG ++ +D+ VF GQAYVALS
Sbjct: 686 KPLVSRVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALS 733
>sp|A6ZM04|PIF1_YEAS7 DNA repair and recombination protein PIF1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=PIF1 PE=3 SV=1
Length = 859
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 RAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALS 81
+ V R Q L L ++++IHK QG ++ +D+ VF GQAYVALS
Sbjct: 686 KPLVSRVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALS 733
>sp|P38766|RRM3_YEAST ATP-dependent helicase RRM3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1
Length = 723
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 24 VTTKFEV-LPRAYV--HREQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVAL 80
V +F + +PR V R Q L L +A++IHK QG ++ +D+ +F GQ YVAL
Sbjct: 629 VPERFPIDIPRENVGLERTQIPLMLCWALSIHKAQGQTIQRLKVDL-RRIFEAGQVYVAL 687
Query: 81 SSQNT 85
S T
Sbjct: 688 SRAVT 692
>sp|A8WX89|U533_CAEBR UPF0533 protein CBG04321 OS=Caenorhabditis briggsae GN=CBG04321
PE=3 SV=2
Length = 401
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 53 KCQGLSMNNALMDIGSSVFSCGQAYVALSSQNTYWRTF 90
KC G +++ + +IG + C Y LS +N Y+R F
Sbjct: 127 KCDGQVISHEVKEIGQHILICSVNYKTLSGENMYFRKF 164
>sp|Q95QQ2|U533_CAEEL UPF0533 protein C56C10.7 OS=Caenorhabditis elegans GN=C56C10.7 PE=1
SV=1
Length = 401
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 46 EYAITIHKCQGLSMNNALMDIGSSVFSCGQAYVALSSQNTYWRTF 90
+ I KC+G +++ + +IG + C Y + +N Y+R F
Sbjct: 120 DATIESSKCEGQVISHEVKEIGQHILICSVNYKTSNGENMYFRKF 164
>sp|P03214|HELI_EBVB9 Probable ATP-dependent helicase BBLF4 OS=Epstein-Barr virus (strain
B95-8) GN=BBLF4 PE=3 SV=1
Length = 809
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSSV-FSCGQAYVALS 81
+ + + A+TI K QGLS+N + GS G YVALS
Sbjct: 724 DYGISSKLAMTIAKAQGLSLNKVAICFGSHRNIKPGHVYVALS 766
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,162,955
Number of Sequences: 539616
Number of extensions: 910377
Number of successful extensions: 2112
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 16
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)