Query psy14809
Match_columns 90
No_of_seqs 123 out of 1026
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:22:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0507 RecD ATP-dependent exo 99.9 2.4E-24 5.2E-29 163.2 2.5 89 1-90 570-668 (696)
2 TIGR01447 recD exodeoxyribonuc 99.9 2.9E-23 6.4E-28 155.3 6.7 89 1-90 472-568 (586)
3 TIGR01448 recD_rel helicase, p 99.9 1.3E-23 2.7E-28 160.2 4.4 88 1-89 594-694 (720)
4 PRK10875 recD exonuclease V su 99.9 5.7E-23 1.2E-27 154.3 4.3 89 1-90 488-586 (615)
5 TIGR02768 TraA_Ti Ti-type conj 99.8 1.6E-21 3.4E-26 149.2 5.1 88 1-90 615-707 (744)
6 PRK13826 Dtr system oriT relax 99.8 3.1E-20 6.8E-25 145.8 4.5 88 1-90 641-736 (1102)
7 PRK13889 conjugal transfer rel 99.8 1.9E-20 4.1E-25 146.1 3.1 88 1-90 608-700 (988)
8 PF02689 Herpes_Helicase: Heli 99.7 1.4E-17 3.1E-22 126.2 5.7 55 35-89 729-784 (818)
9 PF13538 UvrD_C_2: UvrD-like h 99.6 3E-18 6.6E-23 102.2 -3.4 88 1-89 8-103 (104)
10 PHA03311 helicase-primase subu 99.5 6.1E-15 1.3E-19 112.1 3.5 50 40-89 744-794 (828)
11 PRK13709 conjugal transfer nic 99.3 1.4E-12 3E-17 106.6 2.8 88 1-90 1342-1442(1747)
12 TIGR02760 TraI_TIGR conjugativ 99.3 1.1E-12 2.4E-17 108.4 2.0 89 1-90 1396-1493(1960)
13 PRK14712 conjugal transfer nic 99.3 3.3E-12 7.3E-17 103.7 4.3 87 1-90 1213-1313(1623)
14 KOG0987|consensus 99.1 5.1E-12 1.1E-16 94.4 -0.3 67 1-67 449-539 (540)
15 TIGR02760 TraI_TIGR conjugativ 98.8 2.6E-09 5.6E-14 88.9 1.8 87 1-90 754-847 (1960)
16 PF01443 Viral_helicase1: Vira 98.7 8.5E-09 1.9E-13 68.6 2.3 43 47-89 184-232 (234)
17 PRK10919 ATP-dependent DNA hel 98.6 6E-09 1.3E-13 79.7 -0.1 42 47-88 553-608 (672)
18 TIGR01073 pcrA ATP-dependent D 98.4 4.3E-08 9.4E-13 75.4 0.5 40 48-87 552-606 (726)
19 PRK11773 uvrD DNA-dependent he 98.4 5.1E-08 1.1E-12 75.1 0.6 41 47-87 555-610 (721)
20 TIGR01075 uvrD DNA helicase II 98.4 7.2E-08 1.6E-12 74.1 1.4 40 48-87 551-605 (715)
21 PF13361 UvrD_C: UvrD-like hel 98.4 3.7E-08 8.1E-13 68.0 -0.4 42 47-88 289-345 (351)
22 PRK11054 helD DNA helicase IV; 98.1 4.1E-07 8.9E-12 70.0 -1.5 42 48-89 591-659 (684)
23 PRK13909 putative recombinatio 98.0 2.7E-06 5.8E-11 67.2 2.5 19 47-65 609-627 (910)
24 COG1074 RecB ATP-dependent exo 98.0 6E-07 1.3E-11 72.2 -1.3 20 47-66 745-764 (1139)
25 TIGR01074 rep ATP-dependent DN 98.0 1.1E-06 2.4E-11 66.9 -0.2 41 47-87 553-607 (664)
26 TIGR02785 addA_Gpos recombinat 98.0 3.5E-06 7.6E-11 68.4 1.7 19 47-65 784-802 (1232)
27 TIGR00609 recB exodeoxyribonuc 97.9 1.8E-06 3.9E-11 69.3 -0.2 20 46-65 653-672 (1087)
28 PRK13709 conjugal transfer nic 97.9 8.2E-06 1.8E-10 68.0 3.1 85 1-90 718-814 (1747)
29 PRK10876 recB exonuclease V su 97.9 3.4E-06 7.3E-11 68.3 0.1 19 47-65 737-755 (1181)
30 PF13087 AAA_12: AAA domain; P 97.6 3.7E-06 7.9E-11 54.8 -2.9 43 46-88 144-194 (200)
31 COG0210 UvrD Superfamily I DNA 97.4 2.8E-05 6E-10 59.3 -1.0 39 48-86 557-611 (655)
32 TIGR00376 DNA helicase, putati 95.9 0.0046 1E-07 47.7 1.8 42 46-87 554-603 (637)
33 TIGR02784 addA_alphas double-s 95.8 0.0055 1.2E-07 49.8 1.8 19 47-65 777-795 (1141)
34 COG3973 Superfamily I DNA and 95.7 0.0015 3.3E-08 50.2 -1.4 43 48-90 697-743 (747)
35 KOG2108|consensus 94.3 0.023 5E-07 45.0 1.6 37 49-85 678-735 (853)
36 PF09848 DUF2075: Uncharacteri 85.4 0.63 1.4E-05 33.2 2.0 28 42-69 269-296 (352)
37 KOG1803|consensus 84.8 0.87 1.9E-05 35.4 2.5 40 48-87 553-600 (649)
38 TIGR02784 addA_alphas double-s 73.4 0.59 1.3E-05 38.4 -1.5 15 73-87 854-868 (1141)
39 COG3972 Superfamily I DNA and 70.9 0.69 1.5E-05 35.5 -1.5 42 48-89 526-572 (660)
40 KOG1807|consensus 68.8 2.5 5.4E-05 34.2 1.0 38 49-86 902-947 (1025)
41 PRK14712 conjugal transfer nic 59.8 6.6 0.00014 34.0 2.0 65 2-68 587-661 (1623)
42 COG1112 Superfamily I DNA and 59.7 3.7 7.9E-05 31.8 0.5 44 46-89 672-724 (767)
43 COG3410 Uncharacterized conser 55.2 5.6 0.00012 26.3 0.7 25 46-70 89-113 (191)
44 PF08247 ENOD40: ENOD40 protei 36.3 27 0.00058 12.8 1.0 11 44-54 2-12 (12)
45 KOG1806|consensus 36.2 5.1 0.00011 33.4 -2.0 51 39-89 1182-1239(1320)
46 KOG1805|consensus 35.1 5.9 0.00013 32.7 -1.8 40 48-87 1000-1048(1100)
47 PHA03013 hypothetical protein; 30.3 24 0.00052 20.9 0.6 9 49-57 63-71 (109)
48 KOG4565|consensus 30.3 24 0.00051 23.5 0.7 11 46-56 136-146 (206)
49 KOG1802|consensus 24.4 45 0.00097 27.1 1.3 39 48-86 762-808 (935)
50 PF08197 TT_ORF2a: pORF2a trun 22.8 34 0.00074 17.5 0.3 12 47-58 26-37 (49)
No 1
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.4e-24 Score=163.19 Aligned_cols=89 Identities=29% Similarity=0.359 Sum_probs=71.0
Q ss_pred CEeeecCCCCCeecCCEEeeec------e-EEEE-EecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCC--CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDLE------C-VTTK-FEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGS--SV 70 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~~------~-~~~~-~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~--~~ 70 (90)
|.++| |+..|++||+++.... . +.+. +++....+..+.+.++++||||||||||||||++|++.+++ ++
T Consensus 570 m~~~N-~~~~~vfNGdiG~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~ayA~TIHKsQGSef~~v~v~l~~~~~~ 648 (696)
T COG0507 570 MQLRN-DRALGVFNGDIGVILSIVKRRQGDVLVVDFDGREVVVARSELPELELAYAMTIHKSQGSEFDRVIVLLPSHSPM 648 (696)
T ss_pred EEeec-ccccceecCccceEEeeccccCceEEEEecCCCEEEEehhhhhhhhhheeeeEecccCCCCCeEEEEcCCCchh
Confidence 67899 7889999999954332 1 2333 33333456666788899999999999999999999999996 28
Q ss_pred CCCCceEEEecccccccccC
Q psy14809 71 FSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 71 ~~~~~~Yva~SRa~~~~~~~ 90 (90)
++++++|||+||||+...++
T Consensus 649 l~r~l~YtAiTRar~~l~l~ 668 (696)
T COG0507 649 LSRELLYTAITRARDRLILY 668 (696)
T ss_pred hhhhHHHHHhhhhheeEEEE
Confidence 99999999999999987653
No 2
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.88 E-value=2.9e-23 Score=155.28 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=69.6
Q ss_pred CEeeecCCCCCeecCCEEeee---ceEEEEEecCc-eeeeecc-cceeEeeeeeeeecccCCccceEEEEcCC---CCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL---ECVTTKFEVLP-RAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGS---SVFS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~---~~~~~~~~~~~-~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~---~~~~ 72 (90)
|+++| |++.||+||+++... +.+.+.|+... ...+... ...+++|||||||||||+||++|++.++. ++++
T Consensus 472 m~t~N-d~~~gl~NGdiG~i~~~~~~~~v~f~~~~g~~~~~~~~l~~~~~ayA~TvHKSQGsef~~Vi~~l~~~~~~~l~ 550 (586)
T TIGR01447 472 MVTEN-DYTLGLFNGDIGVLLRDPDGLTVWFHFADGSKAVLPSRLPNYETAFAMTVHKSQGSEFDHVILILPNGNSPVLT 550 (586)
T ss_pred EEeec-CcccCcCCCCeEEEEEeCCcEEEEEEcCCCeEEechHHcCccceEEEEEeeHhcCCcCCeEEEECCCCCCcccc
Confidence 67899 999999999996543 23566675422 1333333 34589999999999999999999999876 4789
Q ss_pred CCceEEEecccccccccC
Q psy14809 73 CGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~~ 90 (90)
+.++|||+||||+...||
T Consensus 551 r~llYTaiTRAk~~l~i~ 568 (586)
T TIGR01447 551 RELLYTGITRAKDQLSVW 568 (586)
T ss_pred cceeEEEeeehhCeEEEE
Confidence 999999999999877653
No 3
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.88 E-value=1.3e-23 Score=160.17 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=68.9
Q ss_pred CEeeecCCCCCeecCCEEeee--c--------eEEEEEecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCCC-
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL--E--------CVTTKFEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS- 69 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~--~--------~~~~~~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~- 69 (90)
|.++| |++.|++||+++... . .+.+.|++....+.......+++|||+||||||||||++|++.++..
T Consensus 594 m~~~N-~~~~~v~NGdiG~I~~i~~~~~~~~~~i~v~f~g~~v~~~~~~~~~l~lAYAiTvHKsQGSe~~~Vii~l~~~~ 672 (720)
T TIGR01448 594 MQTKN-DYNNEIFNGDLGMIVKIEGAKQGKKDQVVVDFDGNEVELTRAELFNLTLAYATSIHKSQGSEFPTVILPIHTAH 672 (720)
T ss_pred EEeee-cchhccccCCeeEEEeccccccCCCceEEEEECCeEEEEcHHHhhhhhhhheeeehhccCccCCEEEEECCccc
Confidence 67899 899999999995432 1 25677765333333334446899999999999999999999987653
Q ss_pred --CCCCCceEEEeccccccccc
Q psy14809 70 --VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 70 --~~~~~~~Yva~SRa~~~~~~ 89 (90)
+++++++|||+||||+...+
T Consensus 673 ~~~l~r~llYTAiTRAk~~l~l 694 (720)
T TIGR01448 673 MRMLYRNLLYTALTRAKKRVIL 694 (720)
T ss_pred chhhhhchheeeeeeeceEEEE
Confidence 78999999999999987654
No 4
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.87 E-value=5.7e-23 Score=154.35 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=69.1
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEec--Cceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCC---C
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEV--LPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSS---V 70 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~--~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~---~ 70 (90)
|+++| |++.||+||+++... +.+.+.|+. +....+... ...+++|||||||||||+||++|++.++.. +
T Consensus 488 m~t~N-d~~~gl~NGdiG~v~~~~~~~l~v~f~~~~g~~~~~~~~~l~~~~~ayA~TVHKSQGsEf~~Vilvlp~~~~~~ 566 (615)
T PRK10875 488 MIARN-DSALGLFNGDIGIALDRGQGELRVWFQLPDGNIKSVQPSRLPEHETAWAMTVHKSQGSEFDHTALVLPNQFTPV 566 (615)
T ss_pred EEeec-CcccCcccCceEEEeecCCCeEEEEEECCCCcEEEechHhccccceEEEEehhhhcCCCCCeEEEECCCccchh
Confidence 68899 999999999995543 235566643 333333333 345899999999999999999999988864 6
Q ss_pred CCCCceEEEecccccccccC
Q psy14809 71 FSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 71 ~~~~~~Yva~SRa~~~~~~~ 90 (90)
++++++|||+||||+...++
T Consensus 567 l~R~LlYTaiTRAk~~l~l~ 586 (615)
T PRK10875 567 VTRELVYTAITRARRRLSLY 586 (615)
T ss_pred hhhhhHHhhhhhhhceEEEE
Confidence 89999999999999876653
No 5
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.84 E-value=1.6e-21 Score=149.16 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=72.4
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCCCCCCCc
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQ 75 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~~~ 75 (90)
|+++| |+..|++||+++... ..+.+.++.+..+.+... ..++++|||+|+|||||+|+++|+++ ...++++++
T Consensus 615 ~~~~N-~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~~~l~laYA~TvHKsQGst~~~viv~-~~~~l~r~l 692 (744)
T TIGR02768 615 VFLEN-NRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVL-ASKSMDRHL 692 (744)
T ss_pred EEEec-ccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHhCccCceEEeccccccCCccCcEEEe-cCCccccch
Confidence 67889 899999999995432 357788887666666544 44799999999999999999999998 457899999
Q ss_pred eEEEecccccccccC
Q psy14809 76 AYVALSSQNTYWRTF 90 (90)
Q Consensus 76 ~Yva~SRa~~~~~~~ 90 (90)
+|||+||+|+...+|
T Consensus 693 lYvAiTRar~~~~l~ 707 (744)
T TIGR02768 693 AYVAMTRHRESVQLY 707 (744)
T ss_pred hhhhhhcccceeEEE
Confidence 999999999877664
No 6
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.80 E-value=3.1e-20 Score=145.79 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=69.0
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCc---eeeeecccc-eeEeeeeeeeecccCCccceEEEEcCCCCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLP---RAYVHREQF-SLCLEYAITIHKCQGLSMNNALMDIGSSVFS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~---~~~~~r~~~-p~~~aya~TihKsQG~t~~~v~v~l~~~~~~ 72 (90)
|+++| |++.|++||+++... +.+.+.++.+. .+.+....+ .+++|||+|||||||+|+++|++..+ ..++
T Consensus 641 ~f~rN-d~~lgV~NGd~GtV~~i~~~~i~v~~d~g~~~r~V~~~~~~~~~ldhaYA~TVHKSQGsT~d~V~vl~s-~~ld 718 (1102)
T PRK13826 641 VFLKN-EGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLAS-LSLD 718 (1102)
T ss_pred EEeee-cCccCccCCCeEEEEEecCCeEEEEEcCCCCceEEEechhhccchhheeeeeeecccccccceEEEecc-cccc
Confidence 57899 899999999995432 35667775542 333433333 48999999999999999999998765 6789
Q ss_pred CCceEEEecccccccccC
Q psy14809 73 CGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~~ 90 (90)
++++|||+||+|....+|
T Consensus 719 R~llYVA~TRaR~~~~ly 736 (1102)
T PRK13826 719 RHLTYVAMTRHREDLQLY 736 (1102)
T ss_pred cchhHHhhccccceEEEE
Confidence 999999999999987765
No 7
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.80 E-value=1.9e-20 Score=146.09 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=71.0
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCCCCCCCc
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQ 75 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~~~ 75 (90)
|+++| |+..|++||++.... ..+.++++.+..+.+... ...+++|||+|||||||+|+++|++... +.+++.+
T Consensus 608 m~~rN-d~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~~~ldlaYA~TIHKSQGsT~d~V~vl~~-~~~~r~l 685 (988)
T PRK13889 608 MFLQN-ERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDYDRIDHGYAATIHKAQGMTVDRTHVLAT-PGMDAHS 685 (988)
T ss_pred EEeec-CCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHcCcccchhhhhhHHhcCCCCCeEEEecc-cccccch
Confidence 67899 899999999995432 357788876655555443 3468999999999999999999988764 5688999
Q ss_pred eEEEecccccccccC
Q psy14809 76 AYVALSSQNTYWRTF 90 (90)
Q Consensus 76 ~Yva~SRa~~~~~~~ 90 (90)
+|||+||+|+...+|
T Consensus 686 ~YVAiTRar~~v~l~ 700 (988)
T PRK13889 686 SYVALSRHRDGVDLH 700 (988)
T ss_pred hHHhhhhhhheEEEE
Confidence 999999999887664
No 8
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=99.71 E-value=1.4e-17 Score=126.22 Aligned_cols=55 Identities=42% Similarity=0.630 Sum_probs=51.5
Q ss_pred eeecccceeEeeeeeeeecccCCccceEEEEcCCC-CCCCCceEEEeccccccccc
Q psy14809 35 YVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS-VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 35 ~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~-~~~~~~~Yva~SRa~~~~~~ 89 (90)
...+.|+|+..+||||||||||+++++|.++++++ .|.++++|||+||+++.+++
T Consensus 729 ~~t~~qfpi~~~~AmTIhKSQG~SL~kV~i~l~~~~~F~~gq~YVAlSRvts~~~L 784 (818)
T PF02689_consen 729 LCTRVQFPISSAFAMTIHKSQGQSLDKVAIDLGKPKVFSHGQLYVALSRVTSLEGL 784 (818)
T ss_pred EeeecCCcceeeEEEEEeHhhccccceEEEECCCCcccCCCceEEEEEeecccccc
Confidence 45678999999999999999999999999999988 99999999999999998875
No 9
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.64 E-value=3e-18 Score=102.23 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=53.3
Q ss_pred CEeeecCCCCCeecCCEEee--eceEEEEEecCceeee--ecccceeEeeeeeeeecccCCccceEEEEcCCCC----CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--LECVTTKFEVLPRAYV--HREQFSLCLEYAITIHKCQGLSMNNALMDIGSSV----FS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~~~~~~~~~~~~~~~~--~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~~----~~ 72 (90)
++++| +...+++||++... +............+.. ........++||+|+|||||+||+.|++..+... ..
T Consensus 8 v~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tih~akGle~d~V~v~~~~~~~~~~~~ 86 (104)
T PF13538_consen 8 VITRN-DSEQAVFNGDLGKIEDIYEEEEKDDDKKRVRVDDDENSYQVSHAYAMTIHKAKGLEFDAVIVVDPDSSNFDELS 86 (104)
T ss_dssp EE-CT-BTTTCECCCCHHHHHHHHHCCH--TTCCEEEECCCCCCCTCCCCSEEETGGCTT--EEEEEEEEGGGGSGCGCH
T ss_pred EEEee-CCcCCeecCceEEEecccccccccccccEEEecccccccccCcEEEEEhHHhcCccccEEEEEcCCcccCCchh
Confidence 35677 77889999998211 0000000011111111 1122233489999999999999999999877554 35
Q ss_pred CCceEEEeccccccccc
Q psy14809 73 CGQAYVALSSQNTYWRT 89 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~ 89 (90)
+.++|||+|||++...|
T Consensus 87 ~~~lYva~TRA~~~L~i 103 (104)
T PF13538_consen 87 RRLLYVAITRAKHELYI 103 (104)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred hccEEeeHhHhhhhhCC
Confidence 56799999999987654
No 10
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=99.52 E-value=6.1e-15 Score=112.09 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=45.4
Q ss_pred cceeEeeeeeeeecccCCccceEEEEcCCC-CCCCCceEEEeccccccccc
Q psy14809 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSS-VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 40 ~~p~~~aya~TihKsQG~t~~~v~v~l~~~-~~~~~~~Yva~SRa~~~~~~ 89 (90)
..-+..+||||||||||+++++|.++++.+ .|.++++|||+||+++..++
T Consensus 744 DYGi~~~~AmTI~KSQG~sL~~V~i~f~~~k~~~~gq~YVAlSR~~s~~~L 794 (828)
T PHA03311 744 DYGISSKLAMTIAKSQGLSLDKVAICFGNHKNLKLSHVYVAMSRVTSSNFL 794 (828)
T ss_pred ccccchhheeeehHhhCCccceEEEECCCccccccCcEEEEEEeccCcccc
Confidence 345788999999999999999999999887 99999999999999998764
No 11
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.29 E-value=1.4e-12 Score=106.64 Aligned_cols=88 Identities=26% Similarity=0.268 Sum_probs=62.6
Q ss_pred CEeeecCCCCCeecCCEEee--ec--eEEEEEecCceeeeec----ccceeEeeeeeeeecccCCccceEEEEcC-----
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--LE--CVTTKFEVLPRAYVHR----EQFSLCLEYAITIHKCQGLSMNNALMDIG----- 67 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~~--~~~~~~~~~~~~~~~r----~~~p~~~aya~TihKsQG~t~~~v~v~l~----- 67 (90)
++++| |...|+.||++... +. .+.+....+. ..+.. ...-+++|||.|+|+|||.|.++|++..+
T Consensus 1342 r~Trn-Dk~~G~~Ng~~~tV~~I~~~~I~l~~~~~~-~~l~~~~~~~~~hlD~gYA~T~h~AQG~T~~~vi~~~~~~~~~ 1419 (1747)
T PRK13709 1342 RFTKS-DRERGYVANSVWTVTAVSGDSVTLSDGQQT-RVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGR 1419 (1747)
T ss_pred EEccc-CcccccccCCEEEEEEEcCCeEEEEcCCce-EEecccchhhhhhhhhhhhhhhhhhcccccceEEEEecccccc
Confidence 36788 88999999999332 22 2333322222 22211 23358999999999999999999998654
Q ss_pred CCCCCCCceEEEecccccccccC
Q psy14809 68 SSVFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 68 ~~~~~~~~~Yva~SRa~~~~~~~ 90 (90)
..+++...+||++||+|....||
T Consensus 1420 ~~l~~~~~fYVaiSRar~~l~Iy 1442 (1747)
T PRK13709 1420 KQMAGFESAYVALSRMKQHVQVY 1442 (1747)
T ss_pred ccccchhhhhhcccccccceEEE
Confidence 23678889999999999987765
No 12
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.28 E-value=1.1e-12 Score=108.43 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=66.7
Q ss_pred CEeeecCCCCCeecCCEEee--e--ceEEEEEecCceeeeec---ccceeEeeeeeeeecccCCccceEEEEcCCC--CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--L--ECVTTKFEVLPRAYVHR---EQFSLCLEYAITIHKCQGLSMNNALMDIGSS--VF 71 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~--~~~~~~~~~~~~~~~~r---~~~p~~~aya~TihKsQG~t~~~v~v~l~~~--~~ 71 (90)
++++| |.+.|+.||++... + +.+.+..+.+....+.. ...-+++|||.|.|+|||.|.++|++..+.. +.
T Consensus 1396 ~~t~~-d~~~g~~n~~~~~V~~v~~~~~~~~~~~~~~~~l~~~~~~~~h~d~~YA~T~h~aQG~T~~~vi~~~~s~~~l~ 1474 (1960)
T TIGR02760 1396 RLRAT-DKNRGIKANEVYTVTQVVNGLSVQLSKVKNSLSLKPIQAKDKHWDYAYTRTADSAQGATYTFVIALIKGRLALT 1474 (1960)
T ss_pred EEeec-CcccccccCCeEEEEEEcCCcEEEEcCCCceEEecCchhhhhccchhhhhhhhhhcccccceEEEEecchhhhh
Confidence 36778 99999999999332 2 23445545444444432 2335899999999999999999999887653 56
Q ss_pred CCCceEEEecccccccccC
Q psy14809 72 SCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 72 ~~~~~Yva~SRa~~~~~~~ 90 (90)
+...+||++||+|....||
T Consensus 1475 ~~~~~YVaiSRar~~~~iy 1493 (1960)
T TIGR02760 1475 NYRSAYIDLTRASHHVELY 1493 (1960)
T ss_pred hhhhHhhhhhhcccceEEE
Confidence 7888999999999987765
No 13
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.27 E-value=3.3e-12 Score=103.73 Aligned_cols=87 Identities=29% Similarity=0.312 Sum_probs=62.0
Q ss_pred CEeeecCCCCCeecCCEEe--eec--eEEEEEecCceeee-----ecccceeEeeeeeeeecccCCccceEEEEcCC---
Q psy14809 1 MLRRNIDVSMGLVNGSIVY--DLE--CVTTKFEVLPRAYV-----HREQFSLCLEYAITIHKCQGLSMNNALMDIGS--- 68 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~--~~~--~~~~~~~~~~~~~~-----~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~--- 68 (90)
++++| |...|+.||++.. .+. .+.+. .+..... .....-+++|||.|.|.|||.|.++|+...+.
T Consensus 1213 r~Trn-D~~~G~~Ng~~~tV~~i~~~~i~l~--~g~~~~~i~~~~~~~~~hlD~aYA~Tah~AQG~T~~~vI~~~~s~~~ 1289 (1623)
T PRK14712 1213 RFTKS-DRERGYVANSVWTVTAVSGDSVTLS--DGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGN 1289 (1623)
T ss_pred EEccC-CcccccccCceEEEEEEcCCeEEEe--cCceeEeecCcccchhhhhhhhhhhhhhhccCCccceEEEecccccc
Confidence 45778 8999999999933 222 33333 3332211 11234579999999999999999999887543
Q ss_pred -C-CCCCCceEEEecccccccccC
Q psy14809 69 -S-VFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 69 -~-~~~~~~~Yva~SRa~~~~~~~ 90 (90)
. +.+...+||++||+|....||
T Consensus 1290 ~~~lt~~rsfYVaiSRAr~~v~IY 1313 (1623)
T PRK14712 1290 RKLMAGFESAYVALSRMKQHVQVY 1313 (1623)
T ss_pred hhhcccchhheeeeeeccceEEEE
Confidence 1 347888999999999987775
No 14
>KOG0987|consensus
Probab=99.15 E-value=5.1e-12 Score=94.41 Aligned_cols=67 Identities=31% Similarity=0.396 Sum_probs=50.2
Q ss_pred CEeeecCCCCCeecCCEEee-----------------------eceEEEEE-ecCceeeeecccceeEeeeeeeeecccC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD-----------------------LECVTTKF-EVLPRAYVHREQFSLCLEYAITIHKCQG 56 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~-----------------------~~~~~~~~-~~~~~~~~~r~~~p~~~aya~TihKsQG 56 (90)
|++||+++..|+|||++... +.++.... +....+...|+|||+..+||||||||||
T Consensus 449 mll~nl~~~~gl~~~trl~it~l~~~~~~~~~~~g~r~~~~v~i~r~~~~~~~~~~~~~~~r~qfp~~~~~a~~i~ksqg 528 (540)
T KOG0987|consen 449 MLLRNLDPKGGLCNGTRLQITLLGVFLLEARIVTGSRAGKFVLIPRFDISPSDTNLPFRMRRRQFPLSLAFAMTINKSQG 528 (540)
T ss_pred HhhhccchhhhhhccchhhhhcccCcccceeeeecccccceEEecccccCccccCcccccccccccceeeeecccChhhh
Confidence 78999999999999999110 00111111 1123455678999999999999999999
Q ss_pred CccceEEEEcC
Q psy14809 57 LSMNNALMDIG 67 (90)
Q Consensus 57 ~t~~~v~v~l~ 67 (90)
+++.+|.++++
T Consensus 529 qsl~~v~~~l~ 539 (540)
T KOG0987|consen 529 QSLEKVGLYLP 539 (540)
T ss_pred hhHHhhcCcCC
Confidence 99999999886
No 15
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.77 E-value=2.6e-09 Score=88.94 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred CEeeecCCCCCeecCCEEee--e--ceEEEEEecCceeeeec---ccceeEeeeeeeeecccCCccceEEEEcCCCCCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--L--ECVTTKFEVLPRAYVHR---EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSC 73 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~--~~~~~~~~~~~~~~~~r---~~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~ 73 (90)
|+++| +...||-||++... + ..+.+..+.+....+.. ...+++++||.|.|+|||.|.+.++.. .... ..
T Consensus 754 ~~trn-~~~~gl~ng~~~tV~~i~~~~i~l~~~~g~~~~L~~~~~~~~~ldh~Ya~T~h~aQG~T~~~~~~~-~~~~-~~ 830 (1960)
T TIGR02760 754 QVTGN-HFHSRVRNGELLTVSSINNEGITLITEDGQTLHLPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGV-KQYA-LS 830 (1960)
T ss_pred EEccC-CcccCccCCCEEEEEEEcCCeEEEEeCCCceEEccCCCcccccccccccCCCcccCCCcceEEEEe-cchh-hh
Confidence 67889 78999999999432 2 23555555454444433 356899999999999999999866554 2223 34
Q ss_pred CceEEEecccccccccC
Q psy14809 74 GQAYVALSSQNTYWRTF 90 (90)
Q Consensus 74 ~~~Yva~SRa~~~~~~~ 90 (90)
..+|+++||+++...||
T Consensus 831 ~~~~~~lsRa~~~l~Iy 847 (1960)
T TIGR02760 831 KALLNSLNRSASRVDLF 847 (1960)
T ss_pred HHHHHHHhhCcceeEEE
Confidence 45799999999988776
No 16
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.70 E-value=8.5e-09 Score=68.61 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=36.2
Q ss_pred eeeeeecccCCccceEEEEcCCC----CC--CCCceEEEeccccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIGSS----VF--SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~~~----~~--~~~~~Yva~SRa~~~~~~ 89 (90)
-++|+|.|||+|+++|.+++... .+ ++..+|||+||+++...+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~~~~~~~~~~~~~VALTR~~~~l~i 232 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTDNELYSESRNHLYVALTRHTKSLVI 232 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcccccccCCcccEEEEccccccEEEE
Confidence 38999999999999999987754 23 488999999999987654
No 17
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=98.62 E-value=6e-09 Score=79.69 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=33.1
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC-------------CCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS-------------CGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~-------------~~~~Yva~SRa~~~~~ 88 (90)
--||||+|+|+||+.|+|. +....|. +.++|||+||||+..-
T Consensus 553 ~L~TiH~sKGLEf~~Vfi~gl~eg~~P~~~~~~~~~leEERRLfYVA~TRAk~~L~ 608 (672)
T PRK10919 553 QLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDEDNIDEERRLAYVGITRAQKELT 608 (672)
T ss_pred EEEeeecccCcCCCEEEEeCCcCCCCCCcccCCcccHHHHHHHHHHhHhhhhhheE
Confidence 4589999999999999875 3333443 6789999999997653
No 18
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=98.45 E-value=4.3e-08 Score=75.40 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=31.0
Q ss_pred eeeeecccCCccceEEEE-cCCCCC--------------CCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMD-IGSSVF--------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~-l~~~~~--------------~~~~~Yva~SRa~~~~ 87 (90)
-||||+|+|+||+.|+|. +....| .+.++|||+||||+..
T Consensus 552 LmTiH~sKGLEf~vVfv~gl~eg~~P~~~~~~~~~~~eEERRL~YVAiTRAk~~L 606 (726)
T TIGR01073 552 LMTLHAAKGLEFPVVFLIGMEEGVFPHSRSLMDEKELEEERRLAYVGITRAEEEL 606 (726)
T ss_pred EEeeeeccCccCCEEEEeCCcCCCCCcccccCCchhHHHHHhhHHhhhhhhhheE
Confidence 499999999999999974 322222 3457999999999764
No 19
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=98.43 E-value=5.1e-08 Score=75.07 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=31.8
Q ss_pred eeeeeecccCCccceEEEE-cCCCCC--------------CCCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVF--------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~--------------~~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|+||+.|+|. +....| .+.++|||+||||+..
T Consensus 555 ~LmTiH~AKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L 610 (721)
T PRK11773 555 QLMTLHSAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKL 610 (721)
T ss_pred EEEechhccCCcCCEEEEeCCccCCCCCccccccchhhHHHHhHHHhhhhhhhhee
Confidence 3599999999999999975 322333 2568999999999754
No 20
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=98.43 E-value=7.2e-08 Score=74.13 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.1
Q ss_pred eeeeecccCCccceEEEEc-CCCCCC--------------CCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDI-GSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l-~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
-||+|+|+|+||+.|+|.- ....|. +.++|||+||||+..
T Consensus 551 lmTiH~sKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L 605 (715)
T TIGR01075 551 LMTLHSAKGLEFPLVFLVGMEEGMFPSQMSLDEGGRLEEERRLAYVGITRAMQKL 605 (715)
T ss_pred EEEeeeccCCcCCEEEEeCCcCCCCCCccccCccccHHHHHhHHhhhhhhhhhhe
Confidence 5899999999999999753 222332 357999999999764
No 21
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=98.42 E-value=3.7e-08 Score=67.98 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred eeeeeecccCCccceEEEEcC-CCCCC--------------CCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIG-SSVFS--------------CGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~-~~~~~--------------~~~~Yva~SRa~~~~~ 88 (90)
--||+|||+|.+|+.|+|.-. ...|. +.++|||+||||+..-
T Consensus 289 ~i~TiH~sKGLEf~~V~v~~~~~~~~p~~~~~~~~~~~~Ee~rl~YVA~TRAk~~L~ 345 (351)
T PF13361_consen 289 QIMTIHKSKGLEFDIVFVPGLNEGTFPSYRSIEDRQELEEERRLFYVAMTRAKERLY 345 (351)
T ss_dssp EEEECGGGTT--EEEEEEETTBTBTTTCHHHHHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEeeheeccccCCCeEEEecccCCcChHHHHHhhHhhhHHHHhHheEecchhhceEE
Confidence 459999999999999998633 22332 3368999999998643
No 22
>PRK11054 helD DNA helicase IV; Provisional
Probab=98.07 E-value=4.1e-07 Score=69.99 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=31.8
Q ss_pred eeeeecccCCccceEEEEcCC--------C---------------CC----CCCceEEEeccccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGS--------S---------------VF----SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~--------~---------------~~----~~~~~Yva~SRa~~~~~~ 89 (90)
.+|+|+|+|+|+|.|+|.-.. . .+ .+.++|||+||||+..-+
T Consensus 591 ~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~~~~~~~~~~~eERRLlYVAlTRAr~~l~i 659 (684)
T PRK11054 591 FMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEALLPPPEDFPDAEERRLLYVALTRAKHRVWL 659 (684)
T ss_pred EEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcccccccccccHHHHHHHHHHhhhhhcEEEE
Confidence 589999999999999985221 1 01 366899999999986543
No 23
>PRK13909 putative recombination protein RecB; Provisional
Probab=98.04 E-value=2.7e-06 Score=67.21 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=17.0
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|.+|+.|++.
T Consensus 609 ~imTIHkSKGLEfpvVil~ 627 (910)
T PRK13909 609 QIMTVHKSKGLEFEHVIVC 627 (910)
T ss_pred EEEEeeccCCCCCcEEEEc
Confidence 3599999999999999984
No 24
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=98.03 E-value=6e-07 Score=72.25 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.7
Q ss_pred eeeeeecccCCccceEEEEc
Q psy14809 47 YAITIHKCQGLSMNNALMDI 66 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l 66 (90)
=-||||||+|+|++-|++.-
T Consensus 745 rImTIHkSKGLEfPiVflp~ 764 (1139)
T COG1074 745 RIMTIHKSKGLEFPIVFLPF 764 (1139)
T ss_pred EEEEEeccCCCCCCEEEecC
Confidence 35999999999999999864
No 25
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=98.01 E-value=1.1e-06 Score=66.92 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.2
Q ss_pred eeeeeecccCCccceEEEE-cCCCCC-------------CCCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVF-------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~-------------~~~~~Yva~SRa~~~~ 87 (90)
=-||+|+|+|.+|+.|+|. +....| .+.++|||+||||+..
T Consensus 553 ~l~TiH~sKGLEf~~Vfv~gl~eg~~P~~~~~~~~~~~EErRlfYVA~TRAk~~L 607 (664)
T TIGR01074 553 QLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEEERRLAYVGITRAQKEL 607 (664)
T ss_pred EEEeeecccCccCCeEEEeCCcCCCCCCccccccchHHHHHHHHHHhhhhhhhee
Confidence 3589999999999999975 322233 2446899999999754
No 26
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.95 E-value=3.5e-06 Score=68.38 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|++|+.|++.
T Consensus 784 ~IMTIHkSKGLEFPvVfl~ 802 (1232)
T TIGR02785 784 RLMTIHKSKGLEFPVVFVL 802 (1232)
T ss_pred EEEeeecccCCCCCEEEEe
Confidence 4599999999999999985
No 27
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=1.8e-06 Score=69.30 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
--.||||||+|+||+-|++.
T Consensus 653 V~ImTIHkSKGLEfPvVflp 672 (1087)
T TIGR00609 653 VKIVTIHKSKGLEYPIVFLP 672 (1087)
T ss_pred EEEEEEEccCCCCCCEEEEe
Confidence 34699999999999999974
No 28
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.90 E-value=8.2e-06 Score=67.97 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=56.3
Q ss_pred CEeeecCCCCCeecCCEEe--ee--ceEEEEEecC-ceeeeeccc-----ceeEeeeeeeeecccCCccceEEEEcC--C
Q psy14809 1 MLRRNIDVSMGLVNGSIVY--DL--ECVTTKFEVL-PRAYVHREQ-----FSLCLEYAITIHKCQGLSMNNALMDIG--S 68 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~--~~--~~~~~~~~~~-~~~~~~r~~-----~p~~~aya~TihKsQG~t~~~v~v~l~--~ 68 (90)
++++| |...||.||++.. .+ +.+++..+.. ..+.+.... .+++++||.|.|++ +.+++.+..+ +
T Consensus 718 r~T~n-d~~~~l~Ngd~~tV~~i~~~~i~l~~~~~gk~~~L~~~~~~~~~~~ldhaYa~T~~~a---t~~~~~v~~~~~~ 793 (1747)
T PRK13709 718 RVLGK-IPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHS---VSDSATVFASVTQ 793 (1747)
T ss_pred EEccC-CcccCccCCCEEEEEEecCCeEEEEECCCceEEEeCCcccccccCceeeeeecccccc---cCceeEEEEecCc
Confidence 36788 8999999999943 23 2455554333 223333222 46999999999998 4456554433 3
Q ss_pred CCCCCCceEEEecccccccccC
Q psy14809 69 SVFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 69 ~~~~~~~~Yva~SRa~~~~~~~ 90 (90)
..++... ||++||++....||
T Consensus 794 ~~~s~~~-~v~ltrs~~~l~Iy 814 (1747)
T PRK13709 794 RAMDNAT-LNGLARSGRDVRLY 814 (1747)
T ss_pred hhhhHHH-HHHHhhccceEEEE
Confidence 3555554 99999999887776
No 29
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=97.85 E-value=3.4e-06 Score=68.27 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.9
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|.||+.|++.
T Consensus 737 ~ImTIH~SKGLEfPvVflp 755 (1181)
T PRK10876 737 QIVTIHKSKGLEYPLVWLP 755 (1181)
T ss_pred EEEEEeccCCcCCCEEEec
Confidence 3599999999999999974
No 30
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=97.58 E-value=3.7e-06 Score=54.76 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred eeeeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
-.+.|+|++||+|.|-|++.+... ..+...+-||+||||+..=
T Consensus 144 ~~v~Tvd~~QG~E~diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~li 194 (200)
T PF13087_consen 144 IKVSTVDSFQGQEADIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLI 194 (200)
T ss_dssp SEEEEHHHHTT--EEEEEEEE---STTS-SGGGC-HHHHHHHHTSEEEEEE
T ss_pred EEEecHHHhccccceEEEEEeccCCccccccccCCcCeeeeeHHHHhcCEE
Confidence 467999999999999999876533 2245568999999998653
No 31
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=97.36 E-value=2.8e-05 Score=59.25 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=29.7
Q ss_pred eeeeecccCCccceEEEEc-CCCCC---------------CCCceEEEecccccc
Q psy14809 48 AITIHKCQGLSMNNALMDI-GSSVF---------------SCGQAYVALSSQNTY 86 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l-~~~~~---------------~~~~~Yva~SRa~~~ 86 (90)
-||+|.|+|++|+.|++.- ....| .+.++|||+|||+..
T Consensus 557 lmT~H~aKGlEf~~Vfl~g~~eg~~P~~~~~~~~~~~~eEERRL~YVaiTRA~~~ 611 (655)
T COG0210 557 LMTIHAAKGLEFPYVFLVGLEEGLFPADRSLDEGDEPLEEERRLLYVAITRAKKK 611 (655)
T ss_pred EEechhccCCCCCeEEEecccCCCCCChhhcccCCCCccHHHHHHHHHHHHHHHh
Confidence 4999999999999999853 22222 234689999999864
No 32
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.89 E-value=0.0046 Score=47.66 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=31.4
Q ss_pred eeeeeeecccCCccceEEEEcC--CC----CC--CCCceEEEeccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIG--SS----VF--SCGQAYVALSSQNTYW 87 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~--~~----~~--~~~~~Yva~SRa~~~~ 87 (90)
-..-|+|+.||.+.|-|++.+- .. -| +..-++||+||||...
T Consensus 554 i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~d~rRLNVAlTRAK~~L 603 (637)
T TIGR00376 554 IEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLKDLRRLNVALTRARRKL 603 (637)
T ss_pred eEEccccccCCccccEEEEEEEecCCCCCcccccCcceeeeehhhhhCce
Confidence 3568999999999998886432 11 22 4556999999999864
No 33
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.75 E-value=0.0055 Score=49.83 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=17.1
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|+||+.|++.
T Consensus 777 ~ImTIH~SKGLEfpvV~l~ 795 (1141)
T TIGR02784 777 RVMTVHGAKGLEAPVVFLV 795 (1141)
T ss_pred EEEeccccCCCCCCEEEEe
Confidence 4599999999999999984
No 34
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.68 E-value=0.0015 Score=50.20 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred eeeeecccCCccceEEEEcCCC----CCCCCceEEEecccccccccC
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS----VFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~----~~~~~~~Yva~SRa~~~~~~~ 90 (90)
.+-++-++|.+||.|+++-++. -.....+|||+|||.+..-+|
T Consensus 697 vipvy~aKGlEFD~viv~d~s~~e~te~~~r~LYva~TRAlh~l~if 743 (747)
T COG3973 697 VIPVYDAKGLEFDHVIVVDPSIVEETEQDLRDLYVAVTRALHSLYIF 743 (747)
T ss_pred EEEeeecccceeeeEEEecchhhcccccchhhHHHHHHHHHHHHHHh
Confidence 3556678999999999988753 346667999999998876554
No 35
>KOG2108|consensus
Probab=94.35 E-value=0.023 Score=45.01 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=28.5
Q ss_pred eeeecccCCccceEEEEcCCC-CC--------------------CCCceEEEeccccc
Q psy14809 49 ITIHKCQGLSMNNALMDIGSS-VF--------------------SCGQAYVALSSQNT 85 (90)
Q Consensus 49 ~TihKsQG~t~~~v~v~l~~~-~~--------------------~~~~~Yva~SRa~~ 85 (90)
-|+|++.|.+||.|.+-.+.. .| ....+||++||+++
T Consensus 678 ~Tih~akglefd~v~~~n~~~~~~~s~~~~~r~~~~r~~t~~~~e~n~lyV~vtRakk 735 (853)
T KOG2108|consen 678 GTIHQAKGLEFDNVHLQNDFVKVFGSVSNFERLPSFRVETYNEDEWNFLYVAVTRAKK 735 (853)
T ss_pred HHHHhccCcccceeecccCcccccccccchhhcchhhhhhhhhhhhhheeeeecchhh
Confidence 799999999999999854421 11 12568999999997
No 36
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=85.37 E-value=0.63 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.3
Q ss_pred eeEeeeeeeeecccCCccceEEEEcCCC
Q psy14809 42 SLCLEYAITIHKCQGLSMNNALMDIGSS 69 (90)
Q Consensus 42 p~~~aya~TihKsQG~t~~~v~v~l~~~ 69 (90)
|-..-.+-+||.+||.+++.++|.+.+.
T Consensus 269 ~~~~~evgsi~t~QG~eldy~GVi~G~d 296 (352)
T PF09848_consen 269 PDSIDEVGSIYTIQGFELDYVGVIIGPD 296 (352)
T ss_pred CcccccceeEEEecccccceeEEEECCC
Confidence 3344567899999999999999998866
No 37
>KOG1803|consensus
Probab=84.76 E-value=0.87 Score=35.41 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred eeeeecccCCccceEEEEcC--CCC----C--CCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIG--SSV----F--SCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~--~~~----~--~~~~~Yva~SRa~~~~ 87 (90)
.-|+-+.||.|.+.|++.+= .+. | +..=+=||+||||...
T Consensus 553 V~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~RRLNVAiTRaRRh~ 600 (649)
T KOG1803|consen 553 VGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETRRLNVAITRARRHF 600 (649)
T ss_pred eecccccccceeeEEEEEEEeecCcccccccCCcceeeEEEEeccceE
Confidence 46899999999999997433 221 2 4445899999999754
No 38
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=73.37 E-value=0.59 Score=38.45 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.3
Q ss_pred CCceEEEeccccccc
Q psy14809 73 CGQAYVALSSQNTYW 87 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~ 87 (90)
..++|||+|||+...
T Consensus 854 ~RLLYVAlTRA~~~L 868 (1141)
T TIGR02784 854 RRLLYVAMTRAEDRL 868 (1141)
T ss_pred hhHHHHhhhhhhhee
Confidence 457999999999754
No 39
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=70.94 E-value=0.69 Score=35.53 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=31.8
Q ss_pred eeeeecccCCccceEEEEcCCC-----CCCCCceEEEeccccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS-----VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~-----~~~~~~~Yva~SRa~~~~~~ 89 (90)
-.+|+.++|.+.+-|.+.-... .--++.+|||+||.|-+.++
T Consensus 526 is~IyrAKGnEapfV~aL~a~~ls~~la~~RN~LfTamTRSkawvrv 572 (660)
T COG3972 526 ISRIYRAKGNEAPFVYALGAAYLSTGLADWRNILFTAMTRSKAWVRV 572 (660)
T ss_pred eeeehhccCCCCcEEEEehhhhhCccchhHHhHHHHHHhhhhhhhhh
Confidence 4579999999999988754322 12456799999999887765
No 40
>KOG1807|consensus
Probab=68.77 E-value=2.5 Score=34.17 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=29.1
Q ss_pred eeeecccCCccceEEEEcCCC------CC--CCCceEEEecccccc
Q psy14809 49 ITIHKCQGLSMNNALMDIGSS------VF--SCGQAYVALSSQNTY 86 (90)
Q Consensus 49 ~TihKsQG~t~~~v~v~l~~~------~~--~~~~~Yva~SRa~~~ 86 (90)
-|+-+-||.+-|-|.+.+-++ -| ..+=..||+||||.-
T Consensus 902 atVDsfQGeEndIVLlSLVRsn~~griGFL~~anRvCVALSRAr~g 947 (1025)
T KOG1807|consen 902 ATVDSFQGEENDIVLLSLVRSNISGRIGFLRQANRVCVALSRARWG 947 (1025)
T ss_pred EEeccccCccccEEEEEEEeccCCceeeeeeccchhhhhhhhhhcc
Confidence 578899999999998865543 12 445579999999964
No 41
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=59.81 E-value=6.6 Score=34.02 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=37.9
Q ss_pred EeeecCCCCCeecCCEEe--eec--eEEEEEecCce---eeeecccc-e--eEeeeeeeeecccCCccceEEEEcCC
Q psy14809 2 LRRNIDVSMGLVNGSIVY--DLE--CVTTKFEVLPR---AYVHREQF-S--LCLEYAITIHKCQGLSMNNALMDIGS 68 (90)
Q Consensus 2 l~rN~d~~~Gl~NG~~~~--~~~--~~~~~~~~~~~---~~~~r~~~-p--~~~aya~TihKsQG~t~~~v~v~l~~ 68 (90)
+++| |...||.||++.. .+. .+++..++... ....+..| + +.++|+.|.+++--.+ ..|.+.+.+
T Consensus 587 ~t~n-d~~~~L~ngd~~tV~~i~~~~itl~~~G~~~~~~l~~~~~~~~~~~l~~~Yv~~~~~~~~~~-~~vl~~~~~ 661 (1623)
T PRK14712 587 VTGK-IPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVSDSPFTALKLENGWVETPGHSVSDS-ATVFASVTQ 661 (1623)
T ss_pred EccC-CcccCccCCCEEEEEEecCCeEEEEECCcceeeccccccccccccccccceecCCCCcCCCC-ceEEEEcch
Confidence 5678 8999999999933 222 45555443331 11222333 3 4889999988765443 244444443
No 42
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=59.67 E-value=3.7 Score=31.83 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=29.8
Q ss_pred eeeeeeecccCCccceEEEEcCC------C-CC--CCCceEEEeccccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGS------S-VF--SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~------~-~~--~~~~~Yva~SRa~~~~~~ 89 (90)
...-|++..||.+-|-+++.+-. . .| +..-+=||+||||...-+
T Consensus 672 v~v~tvd~fQG~EkdvIi~S~v~s~~~~~~i~~l~d~rRLNVAlTRAk~~liv 724 (767)
T COG1112 672 VEVGTVDGFQGREKDVIILSLVRSNDDKGEIGFLGDPRRLNVALTRAKRKLIV 724 (767)
T ss_pred eEEeeccccCCccCcEEEEEEEeecCCCccccccCchhhhhhhhhcccceEEE
Confidence 45679999999997777653221 1 22 344466999999976543
No 43
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=55.23 E-value=5.6 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred eeeeeeecccCCccceEEEEcCCCC
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGSSV 70 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~~~ 70 (90)
-|+-+++-+||-+++.|++++.+++
T Consensus 89 ~evgSVYtaQGFdlnYvGvVlGrs~ 113 (191)
T COG3410 89 KEVGSVYTAQGFDLNYVGVVLGRSV 113 (191)
T ss_pred HHhhhhheecccccceeEEEeccce
Confidence 4788999999999999999988763
No 44
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=36.32 E-value=27 Score=12.82 Aligned_cols=11 Identities=27% Similarity=0.313 Sum_probs=6.9
Q ss_pred Eeeeeeeeecc
Q psy14809 44 CLEYAITIHKC 54 (90)
Q Consensus 44 ~~aya~TihKs 54 (90)
.++|--+||-|
T Consensus 2 ~l~wqksihgs 12 (12)
T PF08247_consen 2 ELCWQKSIHGS 12 (12)
T ss_pred ceeEeeeecCC
Confidence 35677777744
No 45
>KOG1806|consensus
Probab=36.19 E-value=5.1 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=36.4
Q ss_pred cccee--EeeeeeeeecccCCccceEEEEcCCC-----CCCCCceEEEeccccccccc
Q psy14809 39 EQFSL--CLEYAITIHKCQGLSMNNALMDIGSS-----VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 39 ~~~p~--~~aya~TihKsQG~t~~~v~v~l~~~-----~~~~~~~Yva~SRa~~~~~~ 89 (90)
.-+|+ .||.+.|+-|-||+.-+-+++.+-.. .-+..-+|||.||++-...+
T Consensus 1182 ~~nPfig~pAkv~tvdk~qgqqndfiIlslv~tr~~gh~rdvrrlvva~srarlglyv 1239 (1320)
T KOG1806|consen 1182 SHNPFIGQPAKVTTVDKFQGQQNDFIILSLVRTREVGHLRDVRRLVVAMSRARLGLYV 1239 (1320)
T ss_pred cCCCccCCcccCCccccccccccceEEeeehhhhhhhhhccHHHHHHHHHHhhccchh
Confidence 34564 88999999999998877777654433 12334589999999865443
No 46
>KOG1805|consensus
Probab=35.09 E-value=5.9 Score=32.74 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=28.6
Q ss_pred eeeeecccCCccceEEEEcCCC--C------C-CCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--V------F-SCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--~------~-~~~~~Yva~SRa~~~~ 87 (90)
.-|+-|-||..=+.+++...+. - + +..=+=||+||||+..
T Consensus 1000 inTVD~yQGRDKd~IivSfvrsn~~~~~~eLLkD~rRlNVAlTRAK~KL 1048 (1100)
T KOG1805|consen 1000 INTVDRYQGRDKDCIIVSFVRSNKKSKVGELLKDWRRLNVALTRAKKKL 1048 (1100)
T ss_pred eeehhhhcCCCCCEEEEEEEecCCcccHHHHHHhhHHHHHHHHhhhceE
Confidence 4799999999988887643322 1 1 2333689999999865
No 47
>PHA03013 hypothetical protein; Provisional
Probab=30.30 E-value=24 Score=20.92 Aligned_cols=9 Identities=56% Similarity=0.641 Sum_probs=7.7
Q ss_pred eeeecccCC
Q psy14809 49 ITIHKCQGL 57 (90)
Q Consensus 49 ~TihKsQG~ 57 (90)
-|++|+||-
T Consensus 63 n~iyk~qg~ 71 (109)
T PHA03013 63 NTIYKAQGI 71 (109)
T ss_pred CEEEeecCe
Confidence 589999994
No 48
>KOG4565|consensus
Probab=30.28 E-value=24 Score=23.48 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=9.1
Q ss_pred eeeeeeecccC
Q psy14809 46 EYAITIHKCQG 56 (90)
Q Consensus 46 aya~TihKsQG 56 (90)
.=-|++|||||
T Consensus 136 sGkMsVskAqs 146 (206)
T KOG4565|consen 136 SGKMSVSKAQS 146 (206)
T ss_pred cCceeeecccc
Confidence 44599999998
No 49
>KOG1802|consensus
Probab=24.38 E-value=45 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=28.9
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTY 86 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~ 86 (90)
.-|+...||.|-|-+++-+-+. +-++.-+=||+||||.-
T Consensus 762 VasVDaFQGrEKdfIIlSCVRsn~~qgIGFl~d~RRlNVaLTRaK~g 808 (935)
T KOG1802|consen 762 VASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYG 808 (935)
T ss_pred EEeeccccCcccceEEEEEeecccccccccccCchhhhhhhhhcccc
Confidence 4578889999999888754432 22566689999999963
No 50
>PF08197 TT_ORF2a: pORF2a truncated protein; InterPro: IPR013267 Most isolated ORF2 of TT virus (TTV) encode a 49 amino acid protein (pORF2a) because of an in-frame stop codon. ORF2s isolated from G1 TTV encode a 202 amino acid protein (pORF2ab) [].
Probab=22.83 E-value=34 Score=17.52 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=8.3
Q ss_pred eeeeeecccCCc
Q psy14809 47 YAITIHKCQGLS 58 (90)
Q Consensus 47 ya~TihKsQG~t 58 (90)
-.--.|+|||.-
T Consensus 26 gGefthrsqgai 37 (49)
T PF08197_consen 26 GGEFTHRSQGAI 37 (49)
T ss_pred ccceeeccccce
Confidence 344579999953
Done!