Query psy14809
Match_columns 90
No_of_seqs 123 out of 1026
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:23:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e1s_A Exodeoxyribonuclease V, 99.8 2.4E-22 8.2E-27 148.9 -0.2 88 1-89 443-537 (574)
2 1w36_D RECD, exodeoxyribonucle 99.8 4E-22 1.4E-26 148.3 -1.4 88 1-89 483-579 (608)
3 3upu_A ATP-dependent DNA helic 99.1 2.2E-12 7.4E-17 93.0 -1.8 50 40-89 404-458 (459)
4 3dmn_A Putative DNA helicase; 98.7 4.9E-10 1.7E-14 71.6 -2.1 44 46-89 102-150 (174)
5 3vkw_A Replicase large subunit 98.2 1.6E-07 5.4E-12 68.1 -1.0 42 48-89 371-418 (446)
6 1uaa_A REP helicase, protein ( 97.9 6.3E-07 2.1E-11 67.0 -1.4 41 47-87 553-607 (673)
7 1pjr_A PCRA; DNA repair, DNA r 97.9 8.1E-07 2.8E-11 67.2 -1.3 41 47-87 560-615 (724)
8 3lfu_A DNA helicase II; SF1 he 97.9 1.1E-06 3.6E-11 64.9 -1.3 41 47-87 555-610 (647)
9 2gk6_A Regulator of nonsense t 97.7 1.7E-06 5.8E-11 64.5 -2.3 41 48-88 533-581 (624)
10 1w36_B RECB, exodeoxyribonucle 97.7 2.3E-06 7.9E-11 67.7 -2.0 19 47-65 737-755 (1180)
11 3u4q_A ATP-dependent helicase/ 97.7 5.8E-06 2E-10 65.8 -0.0 20 47-66 789-808 (1232)
12 2wjy_A Regulator of nonsense t 97.6 4.8E-06 1.6E-10 63.9 -1.4 41 48-88 709-757 (800)
13 2xzl_A ATP-dependent helicase 97.0 4.8E-05 1.6E-09 58.5 -2.3 42 47-88 710-759 (802)
14 4b3f_X DNA-binding protein smu 96.9 7.1E-05 2.4E-09 55.9 -1.7 40 48-87 559-606 (646)
15 1w36_C RECC, exodeoxyribonucle 89.5 0.065 2.2E-06 42.6 -0.0 20 46-65 659-678 (1122)
16 3u4q_B ATP-dependent helicase/ 81.5 0.4 1.4E-05 38.1 0.7 20 46-65 588-607 (1166)
17 4g5s_E PINS homolog, G-protein 38.4 7.5 0.00026 16.7 0.2 9 53-61 10-18 (26)
18 3l4c_A Dedicator of cytokinesi 21.2 30 0.001 22.7 0.8 28 52-83 9-36 (220)
No 1
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.83 E-value=2.4e-22 Score=148.91 Aligned_cols=88 Identities=25% Similarity=0.348 Sum_probs=70.4
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCCC---CCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS---VFSC 73 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~---~~~~ 73 (90)
|+++| |+..|++||+++... +.+.+.|+.....+......++.+|||+|||||||+||+.|++.++.. ++++
T Consensus 443 ~~~~N-~~~~~v~NGdiG~i~~~~~~~l~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~~~~l~r 521 (574)
T 3e1s_A 443 VQTKN-DYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSR 521 (574)
T ss_dssp EECSC-BTTTTBCTTCEEEEEEECSSCEEEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGGGGGCCH
T ss_pred EEeec-CcccceecCceeEEEcCCCCEEEEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcccccccc
Confidence 56788 889999999995432 346777764443444445668999999999999999999999988753 7899
Q ss_pred CceEEEeccccccccc
Q psy14809 74 GQAYVALSSQNTYWRT 89 (90)
Q Consensus 74 ~~~Yva~SRa~~~~~~ 89 (90)
+++|||+||||+...+
T Consensus 522 ~LlYvAiTRAk~~l~l 537 (574)
T 3e1s_A 522 NLVYTALTRARDRFFS 537 (574)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred ceEEEEeeeeeeEEEE
Confidence 9999999999986554
No 2
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.82 E-value=4e-22 Score=148.28 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=45.9
Q ss_pred CEeeecCCCCCeecCCEEeee---ceEEEEEe--cCceeeeecccce-eEeeeeeeeecccCCccceEEEEcCC---CCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL---ECVTTKFE--VLPRAYVHREQFS-LCLEYAITIHKCQGLSMNNALMDIGS---SVF 71 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~---~~~~~~~~--~~~~~~~~r~~~p-~~~aya~TihKsQG~t~~~v~v~l~~---~~~ 71 (90)
|+++| |+..||+||+++... +.+.+.|. .+..+.+....+| ++++||+|||||||+||+.|++.++. .++
T Consensus 483 m~~~N-d~~~gl~NGdiG~V~~~~~~l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~~~~ 561 (608)
T 1w36_D 483 MIARN-DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 (608)
T ss_dssp -----------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCCSSS
T ss_pred eEeee-chhhcccCCCeEEEEEcCCeEEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCccchh
Confidence 78899 899999999995432 23455554 2333344445555 99999999999999999999999885 478
Q ss_pred CCCceEEEeccccccccc
Q psy14809 72 SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 72 ~~~~~Yva~SRa~~~~~~ 89 (90)
+++++|||+||+|+...+
T Consensus 562 ~~~~~Yva~tRa~~~l~l 579 (608)
T 1w36_D 562 TRELVYTAVTRARRRLSL 579 (608)
T ss_dssp CHHHHHHHHTTBSSCEEE
T ss_pred hhhhHHhhhhhhhceEEE
Confidence 999999999999987654
No 3
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.13 E-value=2.2e-12 Score=92.95 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=40.4
Q ss_pred cceeEeeeeeeeecccCCccceEEEEcCCCC-----CCCCceEEEeccccccccc
Q psy14809 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSSV-----FSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 40 ~~p~~~aya~TihKsQG~t~~~v~v~l~~~~-----~~~~~~Yva~SRa~~~~~~ 89 (90)
..++..+||||+|||||+||+.|++..+... ..+.++|||+|||++..-+
T Consensus 404 ~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~~~~~~~~~~~~yva~tRa~~~l~~ 458 (459)
T 3upu_A 404 FSKVKALPASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGRYDVFY 458 (459)
T ss_dssp BCCEEESSEEETGGGTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred HhhcCcEEEEEEEeccCCCCCEEEEecCCCCCcChHHHhheeeeeecceeeEEEe
Confidence 3467899999999999999999999766421 1366799999999986644
No 4
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=98.72 E-value=4.9e-10 Score=71.65 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=35.2
Q ss_pred eeeeeeecccCCccceEEEEcCCC-----CCCCCceEEEeccccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGSS-----VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~~-----~~~~~~~Yva~SRa~~~~~~ 89 (90)
-..+|+|+|||+|||.|++..... ...+.++|||+|||++..-+
T Consensus 102 v~v~t~~~~KGlEf~~V~~~~~~~~~~~~~~~~~llYva~TRA~~~l~~ 150 (174)
T 3dmn_A 102 VIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTL 150 (174)
T ss_dssp EEEEEGGGCTTCCEEEEEEETCBTTTSCSGGGHHHHHHHHTTEEEEEEE
T ss_pred eEEEEccccCCcCCCEEEEecCCcccCCChhhhceeEEEecCcccEEEE
Confidence 356899999999999999886643 23566899999999986544
No 5
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.16 E-value=1.6e-07 Score=68.14 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred eeeeecccCCccceEEEEcCCC----CC--CCCceEEEeccccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS----VF--SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~----~~--~~~~~Yva~SRa~~~~~~ 89 (90)
++|+|.+||+|++.|.++..+. .+ ++..+|||+||+|+...+
T Consensus 371 ~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~~~L~~ 418 (446)
T 3vkw_A 371 VHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKY 418 (446)
T ss_dssp CEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEEEEEEE
T ss_pred ccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCCCEEEE
Confidence 6999999999999999875432 34 467899999999986543
No 6
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.95 E-value=6.3e-07 Score=66.96 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.1
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC-------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS-------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~-------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|.+|+.|++. +....|. +.++|||+||||+..
T Consensus 553 ~l~TiH~sKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~EErRL~YVA~TRAk~~L 607 (673)
T 1uaa_A 553 QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKEL 607 (673)
T ss_dssp EEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEE
T ss_pred EEEeeeecccccCCEEEEecCcCCCCCCcccCcchhHHHHHHHHHHHHHhhhheE
Confidence 4699999999999999985 2223332 236899999999754
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.92 E-value=8.1e-07 Score=67.16 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=31.2
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC--------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|++|+.|++. +....|. +.++|||+|||++..
T Consensus 560 ~lmTiH~aKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~eEErRL~YVaiTRA~~~L 615 (724)
T 1pjr_A 560 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEEL 615 (724)
T ss_dssp EEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeehhcCCCCCEEEEeCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHhheE
Confidence 4599999999999999985 2223332 346899999999754
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.87 E-value=1.1e-06 Score=64.91 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.3
Q ss_pred eeeeeecccCCccceEEEEc-CCCCCC--------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDI-GSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l-~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|++|+.|++.- ....|. +.++|||+||||+..
T Consensus 555 ~l~TiH~aKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~~eeErrL~YVa~TRAk~~L 610 (647)
T 3lfu_A 555 QLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKL 610 (647)
T ss_dssp EEEETGGGTTCCEEEEEECCCBTBTTTBTTCC--CTTHHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeecccCccCCEEEEeCCcCCCCCCcccccCchhHHHHHHHHHHHHhHHhhhe
Confidence 46999999999999999852 222332 247999999999753
No 9
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.72 E-value=1.7e-06 Score=64.48 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=32.5
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
..|+|++||+|+|.|++.+... ..++..+|||+||||...-
T Consensus 533 v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ 581 (624)
T 2gk6_A 533 IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 581 (624)
T ss_dssp EECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEE
T ss_pred EechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEE
Confidence 5699999999999999865432 2256789999999998653
No 10
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=97.69 E-value=2.3e-06 Score=67.74 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|++|+.|++.
T Consensus 737 ~ImTIHkSKGLEfpvVfl~ 755 (1180)
T 1w36_B 737 QIVTIHKSKGLEYPLVWLP 755 (1180)
T ss_dssp EEEETTTTSSCCEEEEEET
T ss_pred EEEEEeccCCCcCCEEEEe
Confidence 4699999999999999984
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.67 E-value=5.8e-06 Score=65.77 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.6
Q ss_pred eeeeeecccCCccceEEEEc
Q psy14809 47 YAITIHKCQGLSMNNALMDI 66 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l 66 (90)
--||||||+|++|+.|++.-
T Consensus 789 ~ImTIH~SKGLEfpvVfl~g 808 (1232)
T 3u4q_A 789 RLMTIHSSKGLEFPVVFVAG 808 (1232)
T ss_dssp EEEEGGGTTTCCEEEEEEEC
T ss_pred EEecchhccCCCCCEEEEcc
Confidence 46999999999999999863
No 12
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.60 E-value=4.8e-06 Score=63.95 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=32.9
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
..|+|++||+|+|.|++.+... .-++..+|||+||||...-
T Consensus 709 V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~Li 757 (800)
T 2wjy_A 709 IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 757 (800)
T ss_dssp EECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEE
T ss_pred EccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEE
Confidence 5699999999999999876532 1246689999999998653
No 13
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=4.8e-05 Score=58.46 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=32.3
Q ss_pred eeeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
-..|+|++||+|+|.|++.+-.. .-+...+|||+||||...-
T Consensus 710 ~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~Li 759 (802)
T 2xzl_A 710 EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLV 759 (802)
T ss_dssp EEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEE
T ss_pred EEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEE
Confidence 35799999999999999865432 1245679999999998653
No 14
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.90 E-value=7.1e-05 Score=55.86 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=30.7
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~ 87 (90)
.-|||+.||+|.|-|++.+-.. +.+..-+.||+||||+..
T Consensus 559 v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~l 606 (646)
T 4b3f_X 559 IKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 606 (646)
T ss_dssp EEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEE
T ss_pred ECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeE
Confidence 4699999999999998865321 224455899999999864
No 15
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=89.54 E-value=0.065 Score=42.57 Aligned_cols=20 Identities=5% Similarity=0.002 Sum_probs=17.4
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
---||+|.|.|.+|+.|++.
T Consensus 659 V~l~Tlh~aKgLef~vVfll 678 (1122)
T 1w36_C 659 VNICTLMPMRSIPFKVVCLL 678 (1122)
T ss_dssp CEEECCCTTCCCCEEEEEEE
T ss_pred EEEeccccccCCCcCEEEEe
Confidence 34699999999999999875
No 16
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.46 E-value=0.4 Score=38.06 Aligned_cols=20 Identities=0% Similarity=-0.042 Sum_probs=17.5
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
--.+|+|.|+|.+|+.|++.
T Consensus 588 V~i~t~~~argl~f~~V~l~ 607 (1166)
T 3u4q_B 588 VFVGNMDLSRMYGTSCTFVL 607 (1166)
T ss_dssp EEEEESSSCCCSSCSEEEEE
T ss_pred EEEecCcccccCCCCEEEEe
Confidence 34699999999999999985
No 17
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=38.39 E-value=7.5 Score=16.65 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=6.9
Q ss_pred cccCCccce
Q psy14809 53 KCQGLSMNN 61 (90)
Q Consensus 53 KsQG~t~~~ 61 (90)
|+||+.++.
T Consensus 10 kcq~srldd 18 (26)
T 4g5s_E 10 KCQGSRLDD 18 (26)
T ss_dssp HHSCCCCSS
T ss_pred Hhccccccc
Confidence 889988753
No 18
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=21.21 E-value=30 Score=22.73 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=7.0
Q ss_pred ecccCCccceEEEEcCCCCCCCCceEEEeccc
Q psy14809 52 HKCQGLSMNNALMDIGSSVFSCGQAYVALSSQ 83 (90)
Q Consensus 52 hKsQG~t~~~v~v~l~~~~~~~~~~Yva~SRa 83 (90)
|.|.|.-|+.|++.-+ .++.+||-+-++
T Consensus 9 ~~~~~~~fpevI~Pgd----~RNdLYVtl~~g 36 (220)
T 3l4c_A 9 HHSSGLVPRGSHMPGD----VRNDIYVTLVQG 36 (220)
T ss_dssp ---------------------CEEEEEEEEEE
T ss_pred cccCCccccccccCCC----CcccEEEEeeEe
Confidence 6678888888887655 566677766554
Done!