RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14809
         (90 letters)



>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 25.9 bits (56), Expect = 0.64
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 20  DLECVTTKFEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNA---LMDIGSSVFSCGQA 76
                    +   ++            +A+T+HK QG   ++A   L    + V +    
Sbjct: 147 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 206

Query: 77  YVALS 81
           Y A++
Sbjct: 207 YTAVT 211


>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase
          ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
          Length = 111

 Score = 23.4 bits (50), Expect = 4.4
 Identities = 5/27 (18%), Positives = 8/27 (29%)

Query: 60 NNALMDIGSSVFSCGQAYVALSSQNTY 86
          +   M   + +   G AYV        
Sbjct: 1  DEEKMHGITGISGSGPAYVFYLLDALQ 27


>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 79

 Score = 22.8 bits (49), Expect = 5.3
 Identities = 3/14 (21%), Positives = 6/14 (42%)

Query: 8  VSMGLVNGSIVYDL 21
          V+  +V    + D 
Sbjct: 9  VTSLIVGNKYLVDP 22


>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 86

 Score = 22.6 bits (48), Expect = 5.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 8  VSMGLVNGSIVYDLEC 23
          V++G  +G I+ DL  
Sbjct: 9  VAVGKADGVIILDLNE 24


>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase
          ProC {Streptococcus pyogenes [TaxId: 1314]}
          Length = 104

 Score = 23.1 bits (49), Expect = 5.8
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 64 MDIGSSVFSCGQAYVALSSQ 83
           D  +++     AY+ L  +
Sbjct: 3  FDTFTALAGSSPAYIYLFIE 22


>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 22.7 bits (48), Expect = 6.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 8  VSMGLVNGSIVYDL 21
           S G V+G+ + DL
Sbjct: 9  CSAGFVDGTALADL 22


>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 99

 Score = 22.7 bits (48), Expect = 7.3
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 8  VSMGLVNGSIVYD 20
          V++G  +G +V D
Sbjct: 9  VAVGKADGQLVLD 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,156
Number of extensions: 11186
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 8
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)