BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14814
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ DM+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ DM+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 11 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 71 HETKHFIYFYLGQVAILLFKSG 92
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ DM+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 13 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 72
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 73 HETKHFIYFYLGQVAILLFKSG 94
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8 IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETRHFIYFYLGQVAILLFKSG 89
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 70 HETRHFIYFYLGQVAILLFKSG 91
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++++ A A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 4 IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 63
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 64 HETKHFIYFYLGQVAILLFKSG 85
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++++ A A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8 IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8 IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FK G
Sbjct: 68 HETRHFIYFYLGQVAILLFKEG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM+ +M+++ + A A+ KY +E DIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFYL ++AIL+FKSG
Sbjct: 70 HETRHFIYFYLGQVAILLFKSG 91
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 67/86 (77%)
Query: 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69
+ + +K DMT +M+ + I A A+ KY VEKDIA +IK + D+ Y+PTWHC+VGRNFG
Sbjct: 17 RGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 70 SFVTHESGNFLYFYLDKIAILVFKSG 95
S+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct: 77 SYVTHETKNFIYFYIGQVAILLFKSG 102
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGR--NFGSF 71
IK +DM+ DM+++ + A A+ KY +EKDIA YIK + DK Y PTWHCIVGR NFGS+
Sbjct: 8 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGSY 67
Query: 72 VTHESGNFLYFYLDKIAILVFKSG 95
VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 VTHETKHFIYFYLGQVAILLFKSG 91
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
IK +DM D++++ I A A+ KY +EKDIA +IK + D+ + PTWHC+VGRNFGS+VT
Sbjct: 8 IKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE+ +F+YFY+ ++A+L+FKSG
Sbjct: 68 HETHHFIYFYIGQVAVLLFKSG 89
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 4 ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCI 63
+D S P +KASD+T ++++ + ++DA+ KY++E+DIA +K QLD Y TWH I
Sbjct: 7 SDENKSTPI-VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65
Query: 64 VGRNFGSFVTHESGNFLYFYLDKIAILVFKS 94
VG+NFGS+VTHE G+F+YFY+ +A LVFK+
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 96
>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
Bacillus Thuringiensis At 2.5 Angstroms Resolution
Length = 584
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 41 EKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69
++DIA + K QL T E T HC+ N G
Sbjct: 162 KEDIAEFYKRQLKLTQEYTDHCVKWYNVG 190
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 23 MEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLY 81
+E+E +F Q + K +++ ++ LD Y PT+ +V + +S N +Y
Sbjct: 149 IEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTF--VVQARHDEMINPDSANIIY 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,848,625
Number of Sequences: 62578
Number of extensions: 103178
Number of successful extensions: 242
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 17
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)