Query psy14814
Match_columns 100
No_of_seqs 100 out of 551
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:30:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430|consensus 100.0 4.7E-41 1E-45 212.8 11.1 86 10-95 4-90 (90)
2 PTZ00059 dynein light chain; P 100.0 3.6E-40 7.8E-45 211.3 12.2 86 10-95 5-90 (90)
3 PLN03058 dynein light chain ty 100.0 1.4E-39 3E-44 219.8 12.3 95 4-98 28-125 (128)
4 PF01221 Dynein_light: Dynein 100.0 4.9E-39 1.1E-43 205.1 10.0 86 10-95 4-89 (89)
5 PF04155 Ground-like: Ground-l 97.6 0.0013 2.8E-08 40.4 8.5 54 39-93 22-76 (76)
6 PF05075 DUF684: Protein of un 90.8 2.9 6.3E-05 32.4 8.9 54 41-94 188-251 (345)
7 PF15650 Tox-REase-9: Restrict 77.6 2 4.4E-05 27.4 2.0 19 47-65 69-87 (89)
8 PF10703 MoaF: Molybdenum cofa 75.1 5.7 0.00012 30.1 4.2 33 59-94 182-215 (265)
9 PF12652 CotJB: CotJB protein; 73.7 2.2 4.9E-05 26.5 1.5 18 42-59 39-56 (78)
10 PF13742 tRNA_anti_2: OB-fold 67.9 19 0.00042 22.7 4.9 50 42-95 5-60 (99)
11 cd03538 Rieske_RO_Alpha_AntDO 65.7 19 0.00042 24.3 4.9 45 47-96 10-55 (146)
12 PRK00286 xseA exodeoxyribonucl 64.8 20 0.00043 28.3 5.5 49 41-95 8-62 (438)
13 PF12362 DUF3646: DNA polymera 62.4 9.8 0.00021 25.3 2.8 29 41-69 48-76 (117)
14 PF06150 ChaB: ChaB; InterPro 61.7 29 0.00063 20.1 4.5 44 17-61 7-54 (57)
15 cd03472 Rieske_RO_Alpha_BPDO_l 61.7 19 0.00042 23.8 4.2 41 52-97 1-42 (128)
16 PF12006 DUF3500: Protein of u 56.3 91 0.002 24.0 8.2 49 8-56 210-261 (313)
17 KOG2451|consensus 56.1 27 0.00058 28.4 4.7 44 9-52 48-93 (503)
18 COG1570 XseA Exonuclease VII, 52.3 23 0.0005 28.8 3.9 53 41-97 8-64 (440)
19 PF06457 Ectatomin: Ectatomin; 50.0 7.2 0.00016 20.3 0.5 14 41-54 21-34 (34)
20 TIGR00237 xseA exodeoxyribonuc 49.2 66 0.0014 25.7 6.1 49 42-96 3-57 (432)
21 PF14900 DUF4493: Domain of un 49.0 46 0.00099 24.0 4.7 37 50-86 119-160 (235)
22 PF05184 SapB_1: Saposin-like 46.9 40 0.00086 17.1 4.5 31 23-53 6-36 (39)
23 PF08908 DUF1852: Domain of un 46.8 10 0.00022 29.1 1.1 27 47-73 93-120 (322)
24 cd03545 Rieske_RO_Alpha_OHBDO_ 43.9 89 0.0019 21.2 5.3 45 46-95 11-57 (150)
25 PF08958 DUF1871: Domain of un 43.7 24 0.00052 21.9 2.2 30 29-58 25-54 (79)
26 PF12550 GCR1_C: Transcription 42.7 7.7 0.00017 23.8 -0.1 12 50-61 29-40 (81)
27 TIGR02084 leud 3-isopropylmala 42.0 49 0.0011 23.0 3.8 30 42-71 27-60 (156)
28 cd05503 Bromo_BAZ2A_B_like Bro 41.6 61 0.0013 20.2 4.0 36 21-56 59-97 (97)
29 COG1352 CheR Methylase of chem 38.7 35 0.00077 25.7 2.9 47 10-62 128-178 (268)
30 PF09868 DUF2095: Uncharacteri 38.0 66 0.0014 21.8 3.8 33 27-59 80-116 (128)
31 PF08015 Pheromone: Fungal mat 37.1 19 0.00042 21.3 1.0 15 50-64 53-69 (69)
32 PF10045 DUF2280: Uncharacteri 36.8 78 0.0017 20.8 3.9 29 26-54 7-35 (104)
33 PF06925 MGDG_synth: Monogalac 36.1 39 0.00085 22.9 2.6 28 42-69 2-29 (169)
34 cd05498 Bromo_Brdt_II_like Bro 35.7 84 0.0018 19.6 3.9 36 21-56 64-102 (102)
35 PF06057 VirJ: Bacterial virul 34.4 42 0.00091 24.3 2.6 29 43-72 53-81 (192)
36 cd01579 AcnA_Bact_Swivel Bacte 34.4 27 0.00059 23.2 1.5 17 55-71 45-61 (121)
37 PF08776 VASP_tetra: VASP tetr 33.8 85 0.0018 17.1 3.7 32 21-54 6-37 (40)
38 PF10925 DUF2680: Protein of u 32.9 58 0.0013 19.0 2.6 16 41-56 34-49 (59)
39 PF10440 WIYLD: Ubiquitin-bind 32.4 43 0.00092 20.1 2.0 43 27-69 10-52 (65)
40 PRK06489 hypothetical protein; 32.3 28 0.00062 26.3 1.5 31 43-73 137-168 (360)
41 PRK14023 homoaconitate hydrata 31.1 65 0.0014 22.6 3.1 18 54-71 45-62 (166)
42 PF08594 UPF0300: Uncharacteri 31.0 1.5E+02 0.0033 21.9 5.1 19 59-77 95-113 (215)
43 PF11858 DUF3378: Domain of un 30.5 72 0.0016 19.7 2.9 21 76-96 29-49 (81)
44 PF07742 BTG: BTG family; Int 30.3 79 0.0017 20.9 3.2 19 43-61 29-47 (118)
45 cd01578 AcnA_Mitochon_Swivel M 29.8 30 0.00065 24.1 1.2 16 56-71 67-82 (149)
46 PRK10425 DNase TatD; Provision 29.3 1.5E+02 0.0033 21.8 5.0 46 21-66 103-157 (258)
47 COG1999 Uncharacterized protei 29.3 78 0.0017 22.6 3.3 55 40-94 114-189 (207)
48 TIGR03228 anthran_1_2_A anthra 29.2 1.1E+02 0.0025 24.6 4.5 47 47-97 26-72 (438)
49 PRK13007 succinyl-diaminopimel 28.2 2.5E+02 0.0055 20.8 6.4 39 19-57 1-42 (352)
50 TIGR00596 rad1 DNA repair prot 27.9 1.8E+02 0.0038 25.6 5.7 17 9-25 112-128 (814)
51 PF02663 FmdE: FmdE, Molybdenu 27.8 1.4E+02 0.0031 19.4 4.2 54 44-97 16-78 (131)
52 KOG4194|consensus 27.6 37 0.00081 29.3 1.5 22 57-78 586-607 (873)
53 PF01743 PolyA_pol: Poly A pol 27.0 1.8E+02 0.004 18.8 4.9 37 45-83 28-64 (126)
54 cd03479 Rieske_RO_Alpha_PhDO_l 26.9 1.4E+02 0.003 19.9 4.1 39 53-96 15-54 (144)
55 KOG2130|consensus 26.8 54 0.0012 26.0 2.2 19 57-75 277-295 (407)
56 PF06869 DUF1258: Protein of u 26.7 1.6E+02 0.0034 22.4 4.6 50 11-60 121-176 (258)
57 PF06840 DUF1241: Protein of u 26.3 44 0.00095 23.4 1.5 13 42-54 123-135 (154)
58 PF02283 CobU: Cobinamide kina 26.0 75 0.0016 22.0 2.7 25 41-66 36-60 (167)
59 PF08006 DUF1700: Protein of u 25.1 2.1E+02 0.0045 19.7 4.8 36 17-52 15-64 (181)
60 KOG3165|consensus 24.7 68 0.0015 23.0 2.2 25 44-68 48-72 (195)
61 PF13798 PCYCGC: Protein of un 24.7 30 0.00065 24.3 0.4 43 14-58 105-147 (158)
62 PRK09111 DNA polymerase III su 24.5 75 0.0016 26.7 2.8 28 42-69 505-532 (598)
63 PF10757 YbaJ: Biofilm formati 24.0 41 0.0009 22.6 1.0 20 37-56 65-84 (122)
64 PF03398 Ist1: Regulator of Vp 23.8 41 0.00089 23.4 1.0 42 17-60 79-120 (165)
65 cd05506 Bromo_plant1 Bromodoma 23.7 1.9E+02 0.004 17.8 4.0 36 21-56 61-99 (99)
66 PF03701 UPF0181: Uncharacteri 23.4 1.6E+02 0.0034 16.9 4.7 33 19-51 8-44 (51)
67 PF01739 CheR: CheR methyltran 23.1 35 0.00076 24.4 0.5 47 11-61 64-111 (196)
68 PF03921 ICAM_N: Intercellular 23.1 1.2E+02 0.0025 19.2 2.9 36 57-96 49-90 (91)
69 PF02806 Alpha-amylase_C: Alph 23.1 91 0.002 18.8 2.4 38 57-94 46-93 (95)
70 PF01545 Cation_efflux: Cation 22.6 91 0.002 22.5 2.7 22 43-64 255-276 (284)
71 cd06913 beta3GnTL1_like Beta 1 22.5 1.5E+02 0.0033 20.2 3.7 23 44-66 12-34 (219)
72 PRK08775 homoserine O-acetyltr 22.2 57 0.0012 24.4 1.6 55 11-74 99-153 (343)
73 cd00197 VHS_ENTH_ANTH VHS, ENT 22.0 49 0.0011 20.9 1.0 20 41-63 35-54 (115)
74 TIGR03229 benzo_1_2_benA benzo 21.9 1.8E+02 0.004 23.4 4.4 47 47-97 26-72 (433)
75 COG3140 Uncharacterized protei 21.9 1.8E+02 0.004 17.0 4.3 33 18-50 7-43 (60)
76 cd04196 GT_2_like_d Subfamily 21.8 1.5E+02 0.0032 19.7 3.5 22 44-66 13-34 (214)
77 cd01577 IPMI_Swivel Aconatase- 21.7 47 0.001 21.1 0.8 13 59-71 18-30 (91)
78 KOG0760|consensus 21.5 24 0.00052 27.2 -0.6 18 46-63 133-153 (302)
79 PF10655 DUF2482: Hypothetical 21.1 62 0.0013 21.0 1.3 47 17-69 6-65 (100)
80 PF01726 LexA_DNA_bind: LexA D 21.1 1.9E+02 0.0041 16.9 3.5 28 21-48 5-35 (65)
81 PRK06761 hypothetical protein; 20.8 1.5E+02 0.0033 22.4 3.6 44 16-60 159-208 (282)
82 cd03483 MutL_Trans_MLH1 MutL_T 20.7 1.9E+02 0.0042 18.8 3.7 29 6-35 98-126 (127)
83 COG1498 SIK1 Protein implicate 20.6 1.4E+02 0.0031 24.0 3.5 41 14-54 199-239 (395)
84 COG0066 LeuD 3-isopropylmalate 20.5 52 0.0011 23.8 1.0 14 59-72 63-76 (191)
85 PF06884 DUF1264: Protein of u 20.5 75 0.0016 22.7 1.8 19 44-62 98-116 (171)
86 cd02860 Pullulanase_N_term Pul 20.5 1.1E+02 0.0025 18.7 2.5 24 51-74 40-64 (100)
87 PF10302 DUF2407: DUF2407 ubiq 20.4 49 0.0011 21.1 0.8 7 60-66 90-96 (97)
88 cd00404 Aconitase_swivel Aconi 20.3 72 0.0016 20.1 1.5 13 59-71 16-28 (88)
89 PF00352 TBP: Transcription fa 20.3 1.6E+02 0.0035 17.8 3.1 26 71-96 30-59 (86)
90 cd05392 RasGAP_Neurofibromin_l 20.3 88 0.0019 23.7 2.3 35 31-65 139-174 (323)
91 cd03542 Rieske_RO_Alpha_HBDO R 20.2 2E+02 0.0043 18.7 3.7 21 76-96 13-33 (123)
92 TIGR01738 bioH putative pimelo 20.1 66 0.0014 21.4 1.4 27 42-73 53-79 (245)
93 PF07062 Clc-like: Clc-like; 20.1 87 0.0019 22.9 2.1 26 55-82 22-47 (211)
No 1
>KOG3430|consensus
Probab=100.00 E-value=4.7e-41 Score=212.85 Aligned_cols=86 Identities=56% Similarity=1.085 Sum_probs=83.5
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEE
Q psy14814 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYK-VEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIA 88 (100)
Q Consensus 10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~-~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~ 88 (100)
.+++|+.+|||++||++|++++.+|+++|+ ++++||..||++||++|||+||||||++|||+|||++++|+||++|.++
T Consensus 4 ~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l~ 83 (90)
T KOG3430|consen 4 RKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVLA 83 (90)
T ss_pred ccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceEE
Confidence 378899999999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred EEEeeeC
Q psy14814 89 ILVFKSG 95 (100)
Q Consensus 89 vLl~kt~ 95 (100)
|||||+.
T Consensus 84 illfK~~ 90 (90)
T KOG3430|consen 84 ILLFKCA 90 (90)
T ss_pred EEEEecC
Confidence 9999984
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=3.6e-40 Score=211.26 Aligned_cols=86 Identities=57% Similarity=1.099 Sum_probs=83.8
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI 89 (100)
Q Consensus 10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v 89 (100)
.+++|+.+|||++||++|++++.+|+++++.++|||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus 5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~v 84 (90)
T PTZ00059 5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAI 84 (90)
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEE
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeC
Q psy14814 90 LVFKSG 95 (100)
Q Consensus 90 Ll~kt~ 95 (100)
||||++
T Consensus 85 LlfK~~ 90 (90)
T PTZ00059 85 LLFKSG 90 (90)
T ss_pred EEEecC
Confidence 999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=219.79 Aligned_cols=95 Identities=38% Similarity=0.757 Sum_probs=89.3
Q ss_pred CCCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEE
Q psy14814 4 ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYK---VEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFL 80 (100)
Q Consensus 4 ~~~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~---~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i 80 (100)
.|+-+.+++.|+.+|||++||++|+++|..|+++++ ++++||++||++||++|||+||||||++|||+|||++++||
T Consensus 28 ~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fI 107 (128)
T PLN03058 28 QDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFL 107 (128)
T ss_pred HhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEE
Confidence 356778899999999999999999999999999974 67999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEEeeeCCCC
Q psy14814 81 YFYLDKIAILVFKSGSME 98 (100)
Q Consensus 81 ~F~~~~~~vLl~kt~~~~ 98 (100)
||++|+++||||||+..+
T Consensus 108 yF~ig~~aiLLfKt~~~~ 125 (128)
T PLN03058 108 YFSIDKVYILLFKTAVEP 125 (128)
T ss_pred EEEECCEEEEEEeccCcc
Confidence 999999999999997653
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=4.9e-39 Score=205.08 Aligned_cols=86 Identities=55% Similarity=0.976 Sum_probs=81.8
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI 89 (100)
Q Consensus 10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v 89 (100)
.+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++++++|
T Consensus 4 ~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~~ 83 (89)
T PF01221_consen 4 NKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIAF 83 (89)
T ss_dssp CSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeC
Q psy14814 90 LVFKSG 95 (100)
Q Consensus 90 Ll~kt~ 95 (100)
|||||+
T Consensus 84 li~kt~ 89 (89)
T PF01221_consen 84 LIFKTQ 89 (89)
T ss_dssp EEEEE-
T ss_pred EEEecC
Confidence 999984
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.55 E-value=0.0013 Score=40.37 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEee
Q psy14814 39 KVEKDIAMYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFK 93 (100)
Q Consensus 39 ~~~~diA~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~k 93 (100)
.+..++++.|.+.+.++||+.+-||++++ |....... ..|.-...++...++|+
T Consensus 22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 56677999999999999999999999995 66555444 88888999999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=90.83 E-value=2.9 Score=32.37 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhcccCCC-ceEEEEeC------C--cceeEEEccCcEEE-EEeCCEEEEEeee
Q psy14814 41 EKDIAMYIKTQLDKTYEP-TWHCIVGR------N--FGSFVTHESGNFLY-FYLDKIAILVFKS 94 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~-~WhciVG~------~--Fgs~vth~~~~~i~-F~~~~~~vLl~kt 94 (100)
..+.|..||+.||+-.-. .+-++|-. + |.+...+....+|. |.-|+..++||||
T Consensus 188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 467899999999996643 58888833 1 11111234445554 6689999999999
No 7
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=77.62 E-value=2 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.2
Q ss_pred HHHHHhcccCCCceEEEEe
Q psy14814 47 YIKTQLDKTYEPTWHCIVG 65 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG 65 (100)
--|++|...||.+|-+||-
T Consensus 69 ~Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 69 NYKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHHhcCccCCCeeEEee
Confidence 4468999999999999973
No 8
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=75.08 E-value=5.7 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.673 Sum_probs=24.5
Q ss_pred ceEEEEeCCcceeEEEccCcEEEEEe-CCEEEEEeee
Q psy14814 59 TWHCIVGRNFGSFVTHESGNFLYFYL-DKIAILVFKS 94 (100)
Q Consensus 59 ~WhciVG~~Fgs~vth~~~~~i~F~~-~~~~vLl~kt 94 (100)
+|||+.|-.=|-. +...+-+|++ .++.++.|+=
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrE 215 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWRE 215 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEe
Confidence 6999999965522 4577888888 4777777864
No 9
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=73.67 E-value=2.2 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcccCCCc
Q psy14814 42 KDIAMYIKTQLDKTYEPT 59 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~ 59 (100)
...-+.+++.+.++|||-
T Consensus 39 ~~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 39 SKQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 344567889999999994
No 10
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=67.87 E-value=19 Score=22.73 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccc--CCCceEEEEeCCcceeEEEccCcEEEEEe----CCEEEEEeeeC
Q psy14814 42 KDIAMYIKTQLDKT--YEPTWHCIVGRNFGSFVTHESGNFLYFYL----DKIAILVFKSG 95 (100)
Q Consensus 42 ~diA~~IK~~lD~~--yG~~WhciVG~~Fgs~vth~~~~~i~F~~----~~~~vLl~kt~ 95 (100)
.++...||+.++.. ++..| |.|+=-+ ++.-.+.++||.+ ......+|++.
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GEIs~--~~~~~~gh~YftLkD~~a~i~~~~~~~~ 60 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGEISN--LKRHSSGHVYFTLKDEEASISCVIFRSR 60 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEEEee--cEECCCceEEEEEEcCCcEEEEEEEHHH
Confidence 57889999999998 57788 5565211 2222777899997 35678888764
No 11
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=65.68 E-value=19 Score=24.31 Aligned_cols=45 Identities=4% Similarity=0.321 Sum_probs=34.0
Q ss_pred HHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEeeeCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGR-NFGSFVTHESGNFLYFYLDKIAILVFKSGS 96 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~vLl~kt~~ 96 (100)
....+++.-|...|+.+.-. ... .++.++-+.+++..++|+|..+
T Consensus 10 ~~~~e~~~i~~~~W~~v~~~~elp-----~~G~~~~~~i~g~~i~v~r~~~ 55 (146)
T cd03538 10 IFALEMERLFGNAWIYVGHESQVP-----NPGDYITTRIGDQPVVMVRHTD 55 (146)
T ss_pred HHHHHHHHHhhcCCEEEEEHHHCC-----CCCCEEEEEECCeeEEEEECCC
Confidence 45677788889999986543 232 4678888999999999999744
No 12
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.82 E-value=20 Score=28.34 Aligned_cols=49 Identities=29% Similarity=0.646 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeC--CcceeEEEccCcEEEEEeC----CEEEEEeeeC
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCIVGR--NFGSFVTHESGNFLYFYLD----KIAILVFKSG 95 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~WhciVG~--~Fgs~vth~~~~~i~F~~~----~~~vLl~kt~ 95 (100)
-.++..+||..|+..++..| |.|. +|- +-...++||.+. .....+|++.
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gEis~~~----~~~sGH~Yf~Lkd~~a~i~~~~~~~~ 62 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGEISNFT----RHSSGHWYFTLKDEIAQIRCVMFKGS 62 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEEeCCCe----eCCCCeEEEEEEcCCcEEEEEEEcCh
Confidence 35789999999999988888 5566 443 234557999973 5789999974
No 13
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=62.39 E-value=9.8 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCcc
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~WhciVG~~Fg 69 (100)
.++++..|++.|..--|..|.|.+++.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47899999999999999999999998755
No 14
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=61.67 E-value=29 Score=20.10 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCchH---HHH-HHHHHHhcccCCCceE
Q psy14814 17 SDMTVDMEKETIRFAQDAIAKYKVEK---DIA-MYIKTQLDKTYEPTWH 61 (100)
Q Consensus 17 ~dM~~~mq~~~~~~a~~a~~~~~~~~---diA-~~IK~~lD~~yG~~Wh 61 (100)
..||..=|+--++.-..|++.|+++. .+| ..+|+.+.+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 45777777888888888999997653 233 679999999 788896
No 15
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=61.66 E-value=19 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.464 Sum_probs=29.2
Q ss_pred hcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 52 LDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 52 lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
|++-+...|+.|.=.+ +. +++.+..+.+++..++|++..+.
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~~~g 42 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQKDG 42 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEECCCC
Confidence 4566888899865443 43 45667778899999999996443
No 16
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=56.27 E-value=91 Score=23.99 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=35.6
Q ss_pred CCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchH--HHHHHH-HHHhcccC
Q psy14814 8 HSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEK--DIAMYI-KTQLDKTY 56 (100)
Q Consensus 8 ~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~--diA~~I-K~~lD~~y 56 (100)
+.+..=|..++|+.+.|+.+..++..=+..++.+- ..-+.| +..||+.|
T Consensus 210 ~~~~~Gl~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~t~ 261 (313)
T PF12006_consen 210 PVPPEGLAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDETY 261 (313)
T ss_pred CCCCCCcChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccceE
Confidence 45556688999999999999999998888777642 222244 66777665
No 17
>KOG2451|consensus
Probab=56.07 E-value=27 Score=28.41 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHh
Q psy14814 9 SKPTKIKASDMTVDMEKETIRFAQDAIAKYKV--EKDIAMYIKTQL 52 (100)
Q Consensus 9 ~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~--~~diA~~IK~~l 52 (100)
.-++.=+..||+-+.-+++++.|.+|++.|.+ -++-++.|++|.
T Consensus 48 ~geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy 93 (503)
T KOG2451|consen 48 NGEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWY 93 (503)
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34666678999999999999999999999875 244455555544
No 18
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.33 E-value=23 Score=28.76 Aligned_cols=53 Identities=28% Similarity=0.518 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC----CEEEEEeeeCCC
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLD----KIAILVFKSGSM 97 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~----~~~vLl~kt~~~ 97 (100)
-.++..+||..||..+|..| |-|. =|.+|+-+..+.||.+. .+...+|+....
T Consensus 8 VSeln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~ 64 (440)
T COG1570 8 VSELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR 64 (440)
T ss_pred HHHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCccc
Confidence 35789999999999999998 5565 13355444448999984 568888887543
No 19
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=50.02 E-value=7.2 Score=20.26 Aligned_cols=14 Identities=43% Similarity=0.479 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhcc
Q psy14814 41 EKDIAMYIKTQLDK 54 (100)
Q Consensus 41 ~~diA~~IK~~lD~ 54 (100)
+.+||.+||++.|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T PF06457_consen 21 SGSIATMIKRKCDK 34 (34)
T ss_dssp SCCHHHHHHHHCH-
T ss_pred cccHHHHHHHHhCC
Confidence 45799999998874
No 20
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=49.20 E-value=66 Score=25.68 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeC--CcceeEEEccCcEEEEEe----CCEEEEEeeeCC
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGR--NFGSFVTHESGNFLYFYL----DKIAILVFKSGS 96 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~--~Fgs~vth~~~~~i~F~~----~~~~vLl~kt~~ 96 (100)
.++..+||..|+..++..| |.|+ ||- .| ...++||++ ..+...+|++..
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GEisn~~---~~-~sGH~YFtLkD~~a~i~~vmf~~~~ 57 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGEISNFT---QP-VSGHWYFTLKDENAQVRCVMFRGNN 57 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEecCCe---eC-CCceEEEEEEcCCcEEEEEEEcChh
Confidence 4688899999999999888 5566 555 23 444799998 367889998753
No 21
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=48.95 E-value=46 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHhcccCCCceEEEEeCCcceeEEE--ccC---cEEEEEeCC
Q psy14814 50 TQLDKTYEPTWHCIVGRNFGSFVTH--ESG---NFLYFYLDK 86 (100)
Q Consensus 50 ~~lD~~yG~~WhciVG~~Fgs~vth--~~~---~~i~F~~~~ 86 (100)
..|.+.|+..|++-|..+-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4567778788999999976888887 555 889999987
No 22
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=46.86 E-value=40 Score=17.09 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHhc
Q psy14814 23 MEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53 (100)
Q Consensus 23 mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD 53 (100)
..+.++..+...++...++.+|.+.|++..+
T Consensus 6 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 6 ICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4677888999999888888889888887543
No 23
>PF08908 DUF1852: Domain of unknown function (DUF1852); InterPro: IPR015004 This group of proteins are functionally uncharacterised.
Probab=46.79 E-value=10 Score=29.07 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=22.4
Q ss_pred HHH-HHhcccCCCceEEEEeCCcceeEE
Q psy14814 47 YIK-TQLDKTYEPTWHCIVGRNFGSFVT 73 (100)
Q Consensus 47 ~IK-~~lD~~yG~~WhciVG~~Fgs~vt 73 (100)
-|| .-+|++-|..-.-|||.+|+|+|.
T Consensus 93 iLkt~IvD~kt~~rieGivGNnFSSYVR 120 (322)
T PF08908_consen 93 ILKTNIVDHKTNERIEGIVGNNFSSYVR 120 (322)
T ss_pred EeeccEEecCCCceecceeccccccccc
Confidence 344 346999999999999999999984
No 24
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=43.89 E-value=89 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.423 Sum_probs=33.8
Q ss_pred HHHHHHhcccCC-CceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeC
Q psy14814 46 MYIKTQLDKTYE-PTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSG 95 (100)
Q Consensus 46 ~~IK~~lD~~yG-~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~ 95 (100)
+....++++-|. ..|+.+.-.+ .. +++.++-+.+++..++|++..
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~~el~-----~~g~~~~~~i~g~~iiv~r~~ 57 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLEAEIP-----NAGDFKSTFVGDTPVVVTRAE 57 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEHHHCC-----CCCCEEEEEECCceEEEEECC
Confidence 356778888895 8999987653 32 456788888998889998853
No 25
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=43.68 E-value=24 Score=21.87 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHhcccCCC
Q psy14814 29 RFAQDAIAKYKVEKDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 29 ~~a~~a~~~~~~~~diA~~IK~~lD~~yG~ 58 (100)
..+.+++...++.+.+|+.|+.-|...||.
T Consensus 25 ~~Iv~~v~~~~~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 25 NDIVQAVHENDDPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcc
Confidence 445566777778888999999988888774
No 26
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=42.70 E-value=7.7 Score=23.75 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=10.2
Q ss_pred HHhcccCCCceE
Q psy14814 50 TQLDKTYEPTWH 61 (100)
Q Consensus 50 ~~lD~~yG~~Wh 61 (100)
+.|+++||..|.
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 468999999996
No 27
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=42.04 E-value=49 Score=23.01 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhc----ccCCCceEEEEeCCccee
Q psy14814 42 KDIAMYIKTQLD----KTYEPTWHCIVGRNFGSF 71 (100)
Q Consensus 42 ~diA~~IK~~lD----~~yG~~WhciVG~~Fgs~ 71 (100)
.++++++=..+| +++.+..-+|.|+||||=
T Consensus 27 ~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~G 60 (156)
T TIGR02084 27 KELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCG 60 (156)
T ss_pred HHHHhhhhccCChhHHhhcCCCCEEEccCcccCC
Confidence 345555444444 345666778888899864
No 28
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.62 E-value=61 Score=20.24 Aligned_cols=36 Identities=3% Similarity=0.082 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhCCchH---HHHHHHHHHhcccC
Q psy14814 21 VDMEKETIRFAQDAIAKYKVEK---DIAMYIKTQLDKTY 56 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~~~---diA~~IK~~lD~~y 56 (100)
.+...++..+...|..-++... ..|..|++.|++++
T Consensus 59 ~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 59 EEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 4566666667777755554433 35888999988764
No 29
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=38.72 E-value=35 Score=25.71 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCch---HHH-HHHHHHHhcccCCCceEE
Q psy14814 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVE---KDI-AMYIKTQLDKTYEPTWHC 62 (100)
Q Consensus 10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~---~di-A~~IK~~lD~~yG~~Whc 62 (100)
.+++|..+|++....+.|..- .|+.. +.+ .+.++++|++.-|+.|++
T Consensus 128 ~~~~I~AtDId~~~L~~A~~G------~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 128 FRVKILATDIDLSVLEKARAG------IYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred CceEEEEEECCHHHHHHHhcC------CCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 589999999999876665332 24411 233 567789999998887765
No 30
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.00 E-value=66 Score=21.75 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhccc----CCCc
Q psy14814 27 TIRFAQDAIAKYKVEKDIAMYIKTQLDKT----YEPT 59 (100)
Q Consensus 27 ~~~~a~~a~~~~~~~~diA~~IK~~lD~~----yG~~ 59 (100)
|++++...-+.=-...+.|..|+..|.++ ||+.
T Consensus 80 ALEVInylek~GEIt~e~A~eLr~~L~~kGvr~fG~r 116 (128)
T PF09868_consen 80 ALEVINYLEKRGEITPEEAKELRSILVKKGVRSFGSR 116 (128)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhHHHhCCc
Confidence 33333333333334578999999999998 7764
No 31
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=37.14 E-value=19 Score=21.28 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHhcccCCC--ceEEEE
Q psy14814 50 TQLDKTYEP--TWHCIV 64 (100)
Q Consensus 50 ~~lD~~yG~--~WhciV 64 (100)
-.++++.|+ +|-|||
T Consensus 53 vd~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 53 VDFERRGGGGAGAFCVI 69 (69)
T ss_pred cCccccCCCCceEEEeC
Confidence 345666666 788886
No 32
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.78 E-value=78 Score=20.77 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q psy14814 26 ETIRFAQDAIAKYKVEKDIAMYIKTQLDK 54 (100)
Q Consensus 26 ~~~~~a~~a~~~~~~~~diA~~IK~~lD~ 54 (100)
++-..+.+++.-|++..++|+.+|++|.-
T Consensus 7 ~vK~FIVQ~LAcfdTPs~v~~aVk~eFgi 35 (104)
T PF10045_consen 7 EVKAFIVQSLACFDTPSEVAEAVKEEFGI 35 (104)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHhCC
Confidence 34455678889999999999999999853
No 33
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=36.12 E-value=39 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcc
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGRNFG 69 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~~Fg 69 (100)
+..|+.|++.|.+++|+...|.|..-|.
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~~~ 29 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDFLE 29 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEehHH
Confidence 3578999999999999999999888544
No 34
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=35.68 E-value=84 Score=19.59 Aligned_cols=36 Identities=3% Similarity=0.111 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHhcccC
Q psy14814 21 VDMEKETIRFAQDAIAKYKVE---KDIAMYIKTQLDKTY 56 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~~---~diA~~IK~~lD~~y 56 (100)
.+...++..+...|..-++.. ...|..|++.|+++|
T Consensus 64 ~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 64 QEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 456667777777775555543 347889999998875
No 35
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=34.42 E-value=42 Score=24.27 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcccCCCceEEEEeCCcceeE
Q psy14814 43 DIAMYIKTQLDKTYEPTWHCIVGRNFGSFV 72 (100)
Q Consensus 43 diA~~IK~~lD~~yG~~WhciVG~~Fgs~v 72 (100)
|+++.|... -+++|..=-+.||.|||+-+
T Consensus 53 Dl~~~i~~y-~~~w~~~~vvLiGYSFGADv 81 (192)
T PF06057_consen 53 DLARIIRHY-RARWGRKRVVLIGYSFGADV 81 (192)
T ss_pred HHHHHHHHH-HHHhCCceEEEEeecCCchh
Confidence 455444433 44566555599999999854
No 36
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=34.39 E-value=27 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=12.0
Q ss_pred cCCCceEEEEeCCccee
Q psy14814 55 TYEPTWHCIVGRNFGSF 71 (100)
Q Consensus 55 ~yG~~WhciVG~~Fgs~ 71 (100)
++|..+-+|.|++|||=
T Consensus 45 ~~~~~~iiVaG~nFG~G 61 (121)
T cd01579 45 KAAGPGFIVGGENYGQG 61 (121)
T ss_pred ccCCCeEEEcCCcCCCC
Confidence 34556777888899863
No 37
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=33.75 E-value=85 Score=17.11 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q psy14814 21 VDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDK 54 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~ 54 (100)
+.|+++|++..+.-+++.+ .+|-..|+++|-+
T Consensus 6 e~~KqEIL~EvrkEl~K~K--~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK--EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 3578889988888888654 3567778887754
No 38
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=32.90 E-value=58 Score=18.98 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhcccC
Q psy14814 41 EKDIAMYIKTQLDKTY 56 (100)
Q Consensus 41 ~~diA~~IK~~lD~~y 56 (100)
-++-|..||..+|+++
T Consensus 34 TqeqAd~ik~~id~~~ 49 (59)
T PF10925_consen 34 TQEQADAIKKHIDQRQ 49 (59)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4678999999999875
No 39
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=32.36 E-value=43 Score=20.13 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcc
Q psy14814 27 TIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69 (100)
Q Consensus 27 ~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fg 69 (100)
=++.|..+++.++..++.+...-+.|=+-||+.|--|=-.||.
T Consensus 10 R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~ 52 (65)
T PF10440_consen 10 RIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYR 52 (65)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHH
Confidence 3567888999999876655555555556888889776555543
No 40
>PRK06489 hypothetical protein; Provisional
Probab=32.26 E-value=28 Score=26.30 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcccCC-CceEEEEeCCcceeEE
Q psy14814 43 DIAMYIKTQLDKTYE-PTWHCIVGRNFGSFVT 73 (100)
Q Consensus 43 diA~~IK~~lD~~yG-~~WhciVG~~Fgs~vt 73 (100)
++|+.+...+.+..| ...+++||.|+|+.+.
T Consensus 137 ~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 137 DMVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred HHHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 566666665544444 5678899999997664
No 41
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=31.12 E-value=65 Score=22.61 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=12.8
Q ss_pred ccCCCceEEEEeCCccee
Q psy14814 54 KTYEPTWHCIVGRNFGSF 71 (100)
Q Consensus 54 ~~yG~~WhciVG~~Fgs~ 71 (100)
+++.+..-.|.|+||||=
T Consensus 45 ~~~~~g~IIVaG~NFG~G 62 (166)
T PRK14023 45 STVRPGDILVAGRNFGLG 62 (166)
T ss_pred hhcCCCCEEEccCcccCC
Confidence 445566777888899864
No 42
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=31.04 E-value=1.5e+02 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.7
Q ss_pred ceEEEEeCCcceeEEEccC
Q psy14814 59 TWHCIVGRNFGSFVTHESG 77 (100)
Q Consensus 59 ~WhciVG~~Fgs~vth~~~ 77 (100)
.|=+|+.++|-|++.=+..
T Consensus 95 ~W~~I~~k~F~c~I~l~~~ 113 (215)
T PF08594_consen 95 SWIAICSKNFMCNIHLDQP 113 (215)
T ss_pred cEEEEecCcceEEEEecCC
Confidence 6999999999999865443
No 43
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=30.53 E-value=72 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=15.2
Q ss_pred cCcEEEEEeCCEEEEEeeeCC
Q psy14814 76 SGNFLYFYLDKIAILVFKSGS 96 (100)
Q Consensus 76 ~~~~i~F~~~~~~vLl~kt~~ 96 (100)
++..+.+..++..|.+|+++-
T Consensus 29 p~~~f~aK~~~~tIt~Y~SGK 49 (81)
T PF11858_consen 29 PYAVFQAKYNGVTITAYKSGK 49 (81)
T ss_dssp TTEEEEEEETTEEEEEETTSE
T ss_pred CCEEEEEeCCCeEEEEEeCCe
Confidence 334445668999999999863
No 44
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=30.26 E-value=79 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcccCCCceE
Q psy14814 43 DIAMYIKTQLDKTYEPTWH 61 (100)
Q Consensus 43 diA~~IK~~lD~~yG~~Wh 61 (100)
..++.|...|-++|.+.|+
T Consensus 29 ~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 29 RFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3688888888889988886
No 45
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=29.84 E-value=30 Score=24.09 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.5
Q ss_pred CCCceEEEEeCCccee
Q psy14814 56 YEPTWHCIVGRNFGSF 71 (100)
Q Consensus 56 yG~~WhciVG~~Fgs~ 71 (100)
-|-.|-+|.|++||+=
T Consensus 67 ~g~~~iIVaG~nyG~G 82 (149)
T cd01578 67 HGIKWVVIGDENYGEG 82 (149)
T ss_pred cCCCeEEEccCccCCC
Confidence 4657999999998853
No 46
>PRK10425 DNase TatD; Provisional
Probab=29.33 E-value=1.5e+02 Score=21.82 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHhcccCCCceEEEEeC
Q psy14814 21 VDMEKETIRFAQDAIAKYKV---------EKDIAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~---------~~diA~~IK~~lD~~yG~~WhciVG~ 66 (100)
.+.|+++.+.-.+...+++. .+++.+.||+.....-++.+||.-|.
T Consensus 103 ~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~ 157 (258)
T PRK10425 103 PEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGT 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCC
Confidence 56788888888888777763 36777788875433347789998887
No 47
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=29.29 E-value=78 Score=22.64 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEe---------CCcceeE---------EEccCcEEEEEe---CCEEEEEeee
Q psy14814 40 VEKDIAMYIKTQLDKTYEPTWHCIVG---------RNFGSFV---------THESGNFLYFYL---DKIAILVFKS 94 (100)
Q Consensus 40 ~~~diA~~IK~~lD~~yG~~WhciVG---------~~Fgs~v---------th~~~~~i~F~~---~~~~vLl~kt 94 (100)
.++|-++.+|+++...+.+.|+-+-| +.|+.+. .|...|...|++ ++.....+..
T Consensus 114 PerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 114 PERDTPEVLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred CCCCCHHHHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence 46788999999999888999999999 3466654 455556666664 3444444433
No 48
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=29.24 E-value=1.1e+02 Score=24.65 Aligned_cols=47 Identities=11% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....++++-|+++|+.|-=.+ -+ -.++.|+-+.+++..++|+|..+.
T Consensus 26 if~~E~~~IF~~~W~~v~h~s---el-p~~GDy~t~~ig~~pviv~R~~dG 72 (438)
T TIGR03228 26 LFDLEMELIFEKNWIYACHES---EL-PNNHDFVTVRAGRQPMIVTRDGKG 72 (438)
T ss_pred HHHHHHHHHHhhCCEEEEEHH---HC-CCCCCeEEEEECCeEEEEEECCCC
Confidence 445778888999999875332 12 255788999999999999997654
No 49
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=28.19 E-value=2.5e+02 Score=20.82 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHhcccCC
Q psy14814 19 MTVDMEKETIRFAQDAIAKYK---VEKDIAMYIKTQLDKTYE 57 (100)
Q Consensus 19 M~~~mq~~~~~~a~~a~~~~~---~~~diA~~IK~~lD~~yG 57 (100)
|+.++..++++...+.++--. .+.++|++|+++|.+.+|
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~ 42 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRALPH 42 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcC
Confidence 344566778888888776643 367899999999998634
No 50
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=27.87 E-value=1.8e+02 Score=25.55 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=14.2
Q ss_pred CCCcEEEeCCCCHHHHH
Q psy14814 9 SKPTKIKASDMTVDMEK 25 (100)
Q Consensus 9 ~~~i~v~~~dM~~~mq~ 25 (100)
.|+++.+..+||++|+.
T Consensus 112 ~~~V~ei~V~l~~~m~~ 128 (814)
T TIGR00596 112 KAEVIELHVSLTDSMSQ 128 (814)
T ss_pred CCeEEEEEeCCCHHHHH
Confidence 47899999999998753
No 51
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=27.80 E-value=1.4e+02 Score=19.42 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=31.9
Q ss_pred HHHHHHHHhcc-cCCCceEEEEeCC--------cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 44 IAMYIKTQLDK-TYEPTWHCIVGRN--------FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 44 iA~~IK~~lD~-~yG~~WhciVG~~--------Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
+|++..+.|.. .-+....||+..+ +..-.|.-.++++....|+.++.+|...+.
T Consensus 16 ~~~~a~~~l~~~~~~~~~~~i~~~~~C~~Da~q~~tg~t~Gk~~l~~~~~g~~~~~~~~~~tg 78 (131)
T PF02663_consen 16 MAKYALEELGIGEDDENLVVIVETGSCKDDALQVITGCTLGKGNLFVKDYGKDAFTFWDRDTG 78 (131)
T ss_dssp HHHHHHHHHTS-STTSSEEEEESSSSCHHHHHHHHSS--TTTTSEEE--SS-SEEEEEETTTS
T ss_pred HHHHHHHHcCCCCCCceEEEEEeCCCCHHHHHHHHhCCCCCCCcEEEEecCceeEEEEECCCC
Confidence 56666666665 4456777777775 223455566777777778777777776543
No 52
>KOG4194|consensus
Probab=27.62 E-value=37 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.3
Q ss_pred CCceEEEEeCCcceeEEEccCc
Q psy14814 57 EPTWHCIVGRNFGSFVTHESGN 78 (100)
Q Consensus 57 G~~WhciVG~~Fgs~vth~~~~ 78 (100)
.+..||||...|||.+++-.+-
T Consensus 586 ~grYQCVvtN~FGStysqk~Kl 607 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKL 607 (873)
T ss_pred CceEEEEEecccCcchhheeEE
Confidence 5789999999999988876543
No 53
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=27.00 E-value=1.8e+02 Score=18.84 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEE
Q psy14814 45 AMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFY 83 (100)
Q Consensus 45 A~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~ 83 (100)
+..+.+.|.++++..+.+ |+.|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 456778888999998877 9999987777776666554
No 54
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=26.89 E-value=1.4e+02 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=26.6
Q ss_pred cccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCC
Q psy14814 53 DKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGS 96 (100)
Q Consensus 53 D~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~ 96 (100)
|+.+-..|+.|.-.+ .. +++.++.+.+++..++|||..+
T Consensus 15 ~~~~~~~W~~v~~~~eL~-----~~g~~~~~~~~g~~i~v~r~~~ 54 (144)
T cd03479 15 GELLRRYWQPVALSSELT-----EDGQPVRVRLLGEDLVAFRDTS 54 (144)
T ss_pred hhHhhCceEEEEEHHHCC-----CCCCEEEEEECCcEEEEEEeCC
Confidence 444556799866442 32 2467788889999999998643
No 55
>KOG2130|consensus
Probab=26.77 E-value=54 Score=26.03 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=14.2
Q ss_pred CCceEEEEeCCcceeEEEc
Q psy14814 57 EPTWHCIVGRNFGSFVTHE 75 (100)
Q Consensus 57 G~~WhciVG~~Fgs~vth~ 75 (100)
|+.||||+--...-.||+.
T Consensus 277 ~GWWHvVlNle~TIAiTqN 295 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQN 295 (407)
T ss_pred CCeEEEEeccCceeeeeec
Confidence 6789999987776666653
No 56
>PF06869 DUF1258: Protein of unknown function (DUF1258); InterPro: IPR009667 This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that this family contains a number of conserved cysteine and histidine residues.
Probab=26.66 E-value=1.6e+02 Score=22.41 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=41.8
Q ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHhCCc------hHHHHHHHHHHhcccCCCce
Q psy14814 11 PTKIKASDMTVDMEKETIRFAQDAIAKYKV------EKDIAMYIKTQLDKTYEPTW 60 (100)
Q Consensus 11 ~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~------~~diA~~IK~~lD~~yG~~W 60 (100)
++.++..|||+...+....+..+++-+... .+.|...|+..+....|..|
T Consensus 121 Pvsl~l~DLp~~~mqks~nvil~gi~e~s~nPSt~~wn~i~p~i~sd~e~~~g~v~ 176 (258)
T PF06869_consen 121 PVSLMLVDLPTSEMQKSTNVILEGIVECSENPSTKVWNRIIPMIFSDMESRTGEVG 176 (258)
T ss_pred eEEEEeecCChhHhhhhHHHhhhheeeccCCCchHHHHHHHHHHHHHhhccccEEc
Confidence 467889999999999999999999877653 36799999999998887643
No 57
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=26.32 E-value=44 Score=23.38 Aligned_cols=13 Identities=54% Similarity=0.583 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcc
Q psy14814 42 KDIAMYIKTQLDK 54 (100)
Q Consensus 42 ~diA~~IK~~lD~ 54 (100)
|+||..||+-||.
T Consensus 123 K~IAsaIK~lLdA 135 (154)
T PF06840_consen 123 KEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7899999999985
No 58
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=25.95 E-value=75 Score=21.99 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeC
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~WhciVG~ 66 (100)
+.++++.|+++-.+| |..|+.|=-.
T Consensus 36 D~em~~RI~~H~~~R-~~~w~tiE~~ 60 (167)
T PF02283_consen 36 DEEMRERIARHRQRR-PKGWITIEEP 60 (167)
T ss_dssp HHHHHHHHHHHHHHS-STCEEEEE-S
T ss_pred CHHHHHHHHHHHHhC-CCCcEEEecc
Confidence 567999999999999 9999998653
No 59
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.07 E-value=2.1e+02 Score=19.66 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHh--------------CCchHHHHHHHHHHh
Q psy14814 17 SDMTVDMEKETIRFAQDAIAK--------------YKVEKDIAMYIKTQL 52 (100)
Q Consensus 17 ~dM~~~mq~~~~~~a~~a~~~--------------~~~~~diA~~IK~~l 52 (100)
.+||++.++++++-..+-++. .++.+++|+.|+...
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 368999999999877666654 233467888877554
No 60
>KOG3165|consensus
Probab=24.68 E-value=68 Score=23.02 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.4
Q ss_pred HHHHHHHHhcccCCCceEEEEeCCc
Q psy14814 44 IAMYIKTQLDKTYEPTWHCIVGRNF 68 (100)
Q Consensus 44 iA~~IK~~lD~~yG~~WhciVG~~F 68 (100)
++..+=-......||.+|+||-.||
T Consensus 48 ~~s~lffqyn~~L~PPy~vivDTNF 72 (195)
T KOG3165|consen 48 VPSALFFQYNTTLGPPYHVIVDTNF 72 (195)
T ss_pred cchhHHHhcccccCCCeEEEEecch
Confidence 4556666778899999999999876
No 61
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=24.67 E-value=30 Score=24.35 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCC
Q psy14814 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 14 v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~ 58 (100)
|...|+-.. ..-.+++|.+++..+..-+. ...|++..|++|..
T Consensus 105 Vvwd~Hg~~-C~vCl~ia~~a~~~~~~Gks-~~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 105 VVWDDHGTR-CGVCLDIAVQAVQMYQEGKS-PKEIRQYIDEKYKE 147 (158)
T ss_pred eeecccccc-cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 344444432 34456777777777766664 45888888998863
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=24.51 E-value=75 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcc
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGRNFG 69 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~~Fg 69 (100)
++++..|++.|.+-.|..|.|.|++..|
T Consensus 505 ~~~~~~l~~~l~~~t~~~w~v~~~~~~~ 532 (598)
T PRK09111 505 RDLAQRLARKLEEWTGRRWVVSVSREGG 532 (598)
T ss_pred hHHHHHHHHHHHHHhCCceEEEEecCCC
Confidence 6899999999999999999999987654
No 63
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=24.00 E-value=41 Score=22.62 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=17.6
Q ss_pred hCCchHHHHHHHHHHhcccC
Q psy14814 37 KYKVEKDIAMYIKTQLDKTY 56 (100)
Q Consensus 37 ~~~~~~diA~~IK~~lD~~y 56 (100)
||+++.++...|-..||++|
T Consensus 65 KYp~~~~l~~~ideYLDeTy 84 (122)
T PF10757_consen 65 KYPDESDLIELIDEYLDETY 84 (122)
T ss_pred ccCcHhhHHHHHHHHHHHHH
Confidence 46778899999999999987
No 64
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=23.78 E-value=41 Score=23.35 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCce
Q psy14814 17 SDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTW 60 (100)
Q Consensus 17 ~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~W 60 (100)
.+.|+++.+.|-.+. .|-..+++-.++. .|++.|-.+||..|
T Consensus 79 k~~p~~l~eAi~sii-yAa~r~~elpEL~-~vr~~l~~kyG~~f 120 (165)
T PF03398_consen 79 KECPPELKEAISSII-YAAPRCGELPELQ-EVRKQLAEKYGKEF 120 (165)
T ss_dssp TSSSCCHHHHHHHHH-HHHHHHTTTCCHH-HHHHHHHCCC-HHH
T ss_pred cCCCHHHHHHHHHHH-HHhhhccCChhHH-HHHHHHHHHhCHHH
Confidence 456677766555444 4445544444554 78889999999765
No 65
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=23.70 E-value=1.9e+02 Score=17.81 Aligned_cols=36 Identities=6% Similarity=0.041 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHhcccC
Q psy14814 21 VDMEKETIRFAQDAIAKYKVE---KDIAMYIKTQLDKTY 56 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~~---~diA~~IK~~lD~~y 56 (100)
.+...++..+...|..-++.. ..+|..|++.|++++
T Consensus 61 ~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 61 EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 455666666666665544433 357888999888764
No 66
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=23.38 E-value=1.6e+02 Score=16.87 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHH
Q psy14814 19 MTVDMEKETIRFAQDAIAKYKVEK----DIAMYIKTQ 51 (100)
Q Consensus 19 M~~~mq~~~~~~a~~a~~~~~~~~----diA~~IK~~ 51 (100)
++-+.|+.+++.+.+.+..=.... -+|+.|+..
T Consensus 8 LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~ 44 (51)
T PF03701_consen 8 LTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREE 44 (51)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 567899999999999998865543 357777654
No 67
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=23.08 E-value=35 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=28.8
Q ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHH-HHHHHHHhcccCCCceE
Q psy14814 11 PTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDI-AMYIKTQLDKTYEPTWH 61 (100)
Q Consensus 11 ~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~di-A~~IK~~lD~~yG~~Wh 61 (100)
++.|..+|++....+. |+++.=....-+.+ ...++++|++.-|+.|.
T Consensus 64 ~~~I~atDi~~~~L~~----Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 64 DFRILATDISPSALEK----ARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp SEEEEEEES-HHHHHH----HHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred ceEEEEEECCHHHHHH----HHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 7999999999976444 44442111112334 55678999888887777
No 68
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=23.06 E-value=1.2e+02 Score=19.25 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCceEEEEeCCcceeEEEccCcEEEEEeCC------EEEEEeeeCC
Q psy14814 57 EPTWHCIVGRNFGSFVTHESGNFLYFYLDK------IAILVFKSGS 96 (100)
Q Consensus 57 G~~WhciVG~~Fgs~vth~~~~~i~F~~~~------~~vLl~kt~~ 96 (100)
|+.|-..-- +.|+++..-+.||.+++ ..|.+|+.|.
T Consensus 49 g~~W~~f~L----snV~~ds~~~C~~~C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 49 GPQWKAFQL----SNVTEDSSPLCFFNCSGEQSSASANITVYKPPE 90 (91)
T ss_dssp ETTEEEEEE----EEE-SCEEEEEEEEETTEEEEEEEEEEEEB--S
T ss_pred CCcEEEEEE----EccccCCeEEEEEEcCCeEEEeEEeeEEeCCCC
Confidence 777877665 45677777788888865 3788998875
No 69
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=23.05 E-value=91 Score=18.77 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCceEEEEeCC---ccee-------EEEccCcEEEEEeCCEEEEEeee
Q psy14814 57 EPTWHCIVGRN---FGSF-------VTHESGNFLYFYLDKIAILVFKS 94 (100)
Q Consensus 57 G~~WhciVG~~---Fgs~-------vth~~~~~i~F~~~~~~vLl~kt 94 (100)
++.|++++..+ ||.+ ++-..+.-+.+.+...+.+|||.
T Consensus 46 ~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 46 AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLPPYSALVLKL 93 (95)
T ss_dssp SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEESTTEEEEEEE
T ss_pred cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEECCCEEEEEEE
Confidence 55677666552 5532 33333344889999999999875
No 70
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=22.59 E-value=91 Score=22.54 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcccCCCceEEEE
Q psy14814 43 DIAMYIKTQLDKTYEPTWHCIV 64 (100)
Q Consensus 43 diA~~IK~~lD~~yG~~WhciV 64 (100)
++++.|++.+-+++++.++|.|
T Consensus 255 ~i~~~i~~~l~~~~~~i~~v~I 276 (284)
T PF01545_consen 255 EIRERIEKRLREKFPGIYDVTI 276 (284)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 5899999999999999999776
No 71
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=22.55 E-value=1.5e+02 Score=20.16 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=9.4
Q ss_pred HHHHHHHHhcccCCCceEEEEeC
Q psy14814 44 IAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 44 iA~~IK~~lD~~yG~~WhciVG~ 66 (100)
+.+.|..-+.+.|.+.|.+||..
T Consensus 12 l~~~l~sl~~q~~~~~~eiiVvD 34 (219)
T cd06913 12 LDECLESVLQQDFEGTLELSVFN 34 (219)
T ss_pred HHHHHHHHHhCCCCCCEEEEEEe
Confidence 33333333334443334444444
No 72
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=22.18 E-value=57 Score=24.43 Aligned_cols=55 Identities=22% Similarity=0.140 Sum_probs=33.0
Q ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEE
Q psy14814 11 PTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTH 74 (100)
Q Consensus 11 ~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth 74 (100)
.-.|+..|++---... -..+. ..+.|+.|..-+|.---..-+++||.|+|+.+.-
T Consensus 99 ~~~Vi~~Dl~G~g~s~--------~~~~~-~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~ 153 (343)
T PRK08775 99 RFRLLAFDFIGADGSL--------DVPID-TADQADAIALLLDALGIARLHAFVGYSYGALVGL 153 (343)
T ss_pred ccEEEEEeCCCCCCCC--------CCCCC-HHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHH
Confidence 5677777777321100 00122 2457888888887643335578999999987643
No 73
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.04 E-value=49 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhcccCCCceEEE
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCI 63 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~Whci 63 (100)
-+++++.|++.|+.+ .|+++
T Consensus 35 ~~~~~~~l~kRl~~~---~~~~~ 54 (115)
T cd00197 35 PKEAVDAIKKRINNK---NPHVV 54 (115)
T ss_pred HHHHHHHHHHHhcCC---cHHHH
Confidence 478999999999875 67654
No 74
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=21.93 E-value=1.8e+02 Score=23.39 Aligned_cols=47 Identities=9% Similarity=0.356 Sum_probs=34.1
Q ss_pred HHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....++++-|.+.|+++.=.+ -+ =+++-|+-+.+++..|+|+|..+.
T Consensus 26 ~f~~E~~~IF~~~W~~v~~~s---el-p~~gd~~t~~~~~~~vvv~R~~dG 72 (433)
T TIGR03229 26 LFDLEMKHIFEGNWIYLAHES---QI-PNNNDYYTTYMGRQPIFIARNKDG 72 (433)
T ss_pred HHHHHHHHHhhhCCEEEEEHH---HC-CCCCCeEEEEECCeEEEEEECCCC
Confidence 456788888999999876432 11 256677778889999999987543
No 75
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.91 E-value=1.8e+02 Score=17.02 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCchHH----HHHHHHH
Q psy14814 18 DMTVDMEKETIRFAQDAIAKYKVEKD----IAMYIKT 50 (100)
Q Consensus 18 dM~~~mq~~~~~~a~~a~~~~~~~~d----iA~~IK~ 50 (100)
.++.+.|+.+++.+.+.+.+--..-+ +|+.|+.
T Consensus 7 ~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe 43 (60)
T COG3140 7 SLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRE 43 (60)
T ss_pred cccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 56789999999999999887554332 4566553
No 76
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.75 E-value=1.5e+02 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=10.0
Q ss_pred HHHHHHHHhcccCCCceEEEEeC
Q psy14814 44 IAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 44 iA~~IK~~lD~~yG~~WhciVG~ 66 (100)
+.+.|..-+.+.|. .|.+||..
T Consensus 13 l~~~l~sl~~q~~~-~~eiiVvd 34 (214)
T cd04196 13 LREQLDSILAQTYK-NDELIISD 34 (214)
T ss_pred HHHHHHHHHhCcCC-CeEEEEEe
Confidence 44444444444443 45555544
No 77
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=21.66 E-value=47 Score=21.12 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.0
Q ss_pred ceEEEEeCCccee
Q psy14814 59 TWHCIVGRNFGSF 71 (100)
Q Consensus 59 ~WhciVG~~Fgs~ 71 (100)
.+-.|.|++|||=
T Consensus 18 ~~ilVaG~nfG~G 30 (91)
T cd01577 18 GDIIVAGKNFGCG 30 (91)
T ss_pred CCEEEecCcccCC
Confidence 5678888899863
No 78
>KOG0760|consensus
Probab=21.50 E-value=24 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.896 Sum_probs=13.9
Q ss_pred HHHHHHh---cccCCCceEEE
Q psy14814 46 MYIKTQL---DKTYEPTWHCI 63 (100)
Q Consensus 46 ~~IK~~l---D~~yG~~Whci 63 (100)
+-||+++ .+.|++.|+||
T Consensus 133 dvVKQR~Qm~~~~y~sv~~ci 153 (302)
T KOG0760|consen 133 DVVKQRMQMYNSPYKSVWDCI 153 (302)
T ss_pred HHHHHHHhcccCCCccHHHHH
Confidence 4567666 56899999997
No 79
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=21.13 E-value=62 Score=20.96 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH--hcc-----------cCCCceEEEEeCCcc
Q psy14814 17 SDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQ--LDK-----------TYEPTWHCIVGRNFG 69 (100)
Q Consensus 17 ~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~--lD~-----------~yG~~WhciVG~~Fg 69 (100)
-||+++...+++. ++....-|+|..|+++ ||- -|-+.=||++|+-|+
T Consensus 6 KdMTqeelr~lls------eK~~ELydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 6 KDMTQEELRDLLS------EKNGELYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred hhhhHHHHHHHHH------HhhHHHHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 4666665544432 2334456788888865 332 223457888887655
No 80
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.11 E-value=1.9e+02 Score=16.87 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhCC---chHHHHHHH
Q psy14814 21 VDMEKETIRFAQDAIAKYK---VEKDIAMYI 48 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~---~~~diA~~I 48 (100)
.+.|.+|++.+.+-+++++ +.+|||+.+
T Consensus 5 T~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 5 TERQKEVLEFIREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp -HHHHHHHHHHHHHHHHHSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4678999999998888754 356777554
No 81
>PRK06761 hypothetical protein; Provisional
Probab=20.75 E-value=1.5e+02 Score=22.45 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=32.2
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCc------hHHHHHHHHHHhcccCCCce
Q psy14814 16 ASDMTVDMEKETIRFAQDAIAKYKV------EKDIAMYIKTQLDKTYEPTW 60 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a~~~~~~------~~diA~~IK~~lD~~yG~~W 60 (100)
.-|++++.-..=+......++..+. ..|+++.|.+-++++ |..|
T Consensus 159 ~~~~~~~~i~~y~~~l~~~i~~l~p~l~yl~~~dv~~~~~~~~~eR-~~~W 208 (282)
T PRK06761 159 KYGAQKEKITNYVMKLAKIIENLNPMLFYLEQDDVEFSFRKALKER-NPEW 208 (282)
T ss_pred HcCCCHHHHHHHHHHHHHHHhccCcEEEEecccCHHHHHHHHHHhc-chHH
Confidence 3477777766666677777776553 467999999999999 5555
No 82
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=20.65 E-value=1.9e+02 Score=18.81 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=18.0
Q ss_pred CCCCCCcEEEeCCCCHHHHHHHHHHHHHHH
Q psy14814 6 NVHSKPTKIKASDMTVDMEKETIRFAQDAI 35 (100)
Q Consensus 6 ~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~ 35 (100)
|||+.|-+|+..| .+...+.+.+.+.+|+
T Consensus 98 NVHP~K~eV~f~~-e~~i~~~i~~~v~~~L 126 (127)
T cd03483 98 NVHPTKREVHFLN-EEEIIERIQKLVEDKL 126 (127)
T ss_pred ccCCCccEEEecC-HHHHHHHHHHHHHHHh
Confidence 6777788888877 4455555555444443
No 83
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=20.62 E-value=1.4e+02 Score=23.96 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=34.7
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q psy14814 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDK 54 (100)
Q Consensus 14 v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~ 54 (100)
-...+|++.+...|...|....+.+..-+++.++|...++.
T Consensus 199 SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~ 239 (395)
T COG1498 199 SMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSE 239 (395)
T ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999998888888888888887754
No 84
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=20.52 E-value=52 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.276 Sum_probs=10.0
Q ss_pred ceEEEEeCCcceeE
Q psy14814 59 TWHCIVGRNFGSFV 72 (100)
Q Consensus 59 ~WhciVG~~Fgs~v 72 (100)
.=-.|+|+||||=-
T Consensus 63 g~IlVag~NFGcGS 76 (191)
T COG0066 63 GDILVAGENFGCGS 76 (191)
T ss_pred ccEEEecCCCCCCc
Confidence 44578888999743
No 85
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=20.49 E-value=75 Score=22.65 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=13.8
Q ss_pred HHHHHHHHhcccCCCceEE
Q psy14814 44 IAMYIKTQLDKTYEPTWHC 62 (100)
Q Consensus 44 iA~~IK~~lD~~yG~~Whc 62 (100)
....+-+.+-..||.+||-
T Consensus 98 ae~~~m~~l~~tYGKt~Ht 116 (171)
T PF06884_consen 98 AEKAEMEKLVKTYGKTWHT 116 (171)
T ss_pred HHHHHHHHHHhhhCCeEEe
Confidence 3445666777899999884
No 86
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.46 E-value=1.1e+02 Score=18.73 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=16.1
Q ss_pred HhcccCCCceEEEEeCCc-ceeEEE
Q psy14814 51 QLDKTYEPTWHCIVGRNF-GSFVTH 74 (100)
Q Consensus 51 ~lD~~yG~~WhciVG~~F-gs~vth 74 (100)
.|+++-|+.||+.|-... |....+
T Consensus 40 ~m~~~~~gvw~~~v~~~~~g~~Y~y 64 (100)
T cd02860 40 QMKRGENGVWSVTLDGDLEGYYYLY 64 (100)
T ss_pred eeecCCCCEEEEEeCCccCCcEEEE
Confidence 466688999999997542 443333
No 87
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=20.41 E-value=49 Score=21.12 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=5.8
Q ss_pred eEEEEeC
Q psy14814 60 WHCIVGR 66 (100)
Q Consensus 60 WhciVG~ 66 (100)
=||+||.
T Consensus 90 IhCsIGd 96 (97)
T PF10302_consen 90 IHCSIGD 96 (97)
T ss_pred EEEeccC
Confidence 4999995
No 88
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=20.33 E-value=72 Score=20.14 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=9.3
Q ss_pred ceEEEEeCCccee
Q psy14814 59 TWHCIVGRNFGSF 71 (100)
Q Consensus 59 ~WhciVG~~Fgs~ 71 (100)
.|-+|.|++|||=
T Consensus 16 ~~iiVaG~nfG~G 28 (88)
T cd00404 16 PGVVIGDENYGTG 28 (88)
T ss_pred CEEEEecCCeecC
Confidence 5777777788753
No 89
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=20.30 E-value=1.6e+02 Score=17.80 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=17.1
Q ss_pred eEEEccCc--EEEEEe--CCEEEEEeeeCC
Q psy14814 71 FVTHESGN--FLYFYL--DKIAILVFKSGS 96 (100)
Q Consensus 71 ~vth~~~~--~i~F~~--~~~~vLl~kt~~ 96 (100)
...|+|+. .+.+++ .+..++||+||.
T Consensus 30 ~~~YePe~fpgl~~r~~~p~~t~~IF~sGk 59 (86)
T PF00352_consen 30 NVEYEPERFPGLIYRLRNPKATVLIFSSGK 59 (86)
T ss_dssp TEEEETTTESSEEEEETTTTEEEEEETTSE
T ss_pred CcEEeeccCCeEEEeecCCcEEEEEEcCCE
Confidence 35677773 355665 378888888763
No 90
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=20.29 E-value=88 Score=23.73 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHhCCc-hHHHHHHHHHHhcccCCCceEEEEe
Q psy14814 31 AQDAIAKYKV-EKDIAMYIKTQLDKTYEPTWHCIVG 65 (100)
Q Consensus 31 a~~a~~~~~~-~~diA~~IK~~lD~~yG~~WhciVG 65 (100)
+.+.++.++. -+.+|+.|++.+.++|...+.-+||
T Consensus 139 I~~s~~~~P~~lr~i~~~l~~~v~~kfp~~~~~~Vg 174 (323)
T cd05392 139 IISSLDRFPPELREICHHIYEVVSEKFPDSALSAVG 174 (323)
T ss_pred HHHhHHhCCHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3334444554 3779999999999999875544444
No 91
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=20.21 E-value=2e+02 Score=18.73 Aligned_cols=21 Identities=0% Similarity=0.271 Sum_probs=16.9
Q ss_pred cCcEEEEEeCCEEEEEeeeCC
Q psy14814 76 SGNFLYFYLDKIAILVFKSGS 96 (100)
Q Consensus 76 ~~~~i~F~~~~~~vLl~kt~~ 96 (100)
.+.++.+.+++..++|+|..+
T Consensus 13 ~g~~~~~~~~~~~i~l~r~~~ 33 (123)
T cd03542 13 NNDYFTTTIGRQPVVITRDKD 33 (123)
T ss_pred CCCEEEEEECCcEEEEEECCC
Confidence 467888889999999999754
No 92
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=20.10 E-value=66 Score=21.36 Aligned_cols=27 Identities=26% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcceeEE
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vt 73 (100)
.++++.|+..+++ -..+||.|+|+.+.
T Consensus 53 ~~~~~~~~~~~~~-----~~~lvG~S~Gg~~a 79 (245)
T TIGR01738 53 ADAAEAIAAQAPD-----PAIWLGWSLGGLVA 79 (245)
T ss_pred HHHHHHHHHhCCC-----CeEEEEEcHHHHHH
Confidence 4677777776653 24689999998764
No 93
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=20.10 E-value=87 Score=22.88 Aligned_cols=26 Identities=27% Similarity=0.741 Sum_probs=18.7
Q ss_pred cCCCceEEEEeCCcceeEEEccCcEEEE
Q psy14814 55 TYEPTWHCIVGRNFGSFVTHESGNFLYF 82 (100)
Q Consensus 55 ~yG~~WhciVG~~Fgs~vth~~~~~i~F 82 (100)
-+-|.||++--++++.+ |+-|-..+-
T Consensus 22 l~SPsWQvv~~~e~~~~--h~hGLW~dC 47 (211)
T PF07062_consen 22 LFSPSWQVVNIREFRAY--HQHGLWLDC 47 (211)
T ss_pred HcCCceEEEEecccCcE--Eecceeeec
Confidence 35699999999999977 454544443
Done!