Query psy14814
Match_columns 100
No_of_seqs 100 out of 551
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:31:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ds1_A Dynein light chain 1, c 100.0 5.2E-43 1.8E-47 226.3 9.5 87 9-95 11-97 (97)
2 3rjs_A Dynein light chain moto 100.0 7.8E-43 2.7E-47 222.3 9.3 86 10-95 4-89 (89)
3 1yo3_A Dynein light chain 1; s 100.0 7.5E-42 2.6E-46 222.6 10.6 90 6-95 13-102 (102)
4 1wyo_A Protein EB3, microtubul 62.5 11 0.00037 25.5 4.2 51 6-58 62-128 (159)
5 3gzx_A Biphenyl dioxygenase su 59.7 24 0.00083 27.2 6.3 47 46-97 44-91 (457)
6 1eci_A Ectatomin; pore-forming 59.5 4.7 0.00016 20.5 1.5 14 41-54 23-36 (37)
7 1eci_B Ectatomin; pore-forming 57.4 3.8 0.00013 20.5 0.9 14 41-54 21-34 (34)
8 3e9v_A Protein BTG2; B-cell tr 54.3 13 0.00045 23.9 3.4 44 18-61 1-48 (120)
9 2bmo_A Oxygenase-alpha NBDO; n 53.8 33 0.0011 26.0 6.1 46 47-97 24-70 (447)
10 2gbw_A Biphenyl 2,3-dioxygenas 52.6 35 0.0012 25.9 6.1 46 47-97 25-71 (454)
11 1use_A VAsp, vasodilator-stimu 52.5 21 0.00073 19.2 3.5 34 21-56 10-43 (45)
12 3vca_A Ring-hydroxylating diox 51.2 37 0.0013 25.7 6.0 47 46-97 30-77 (412)
13 1uli_A Biphenyl dioxygenase la 50.7 39 0.0013 25.8 6.1 46 47-97 43-89 (460)
14 2b1x_A Naphthalene dioxygenase 49.7 44 0.0015 25.5 6.3 46 47-97 33-79 (470)
15 2qjz_A Microtubule-associated 48.1 11 0.00036 24.4 2.2 42 16-58 54-111 (123)
16 3n0q_A Putative aromatic-ring 47.9 47 0.0016 25.2 6.1 47 46-97 28-75 (409)
17 3k6g_A Telomeric repeat-bindin 37.8 8.3 0.00028 24.5 0.4 43 20-62 6-63 (111)
18 3id6_A NOP5, PRE mRNA splicing 35.1 45 0.0016 24.1 4.0 40 16-55 222-261 (268)
19 2z15_A Protein TOB1; human TOB 34.7 16 0.00054 23.8 1.4 43 18-60 7-51 (130)
20 3idw_A Actin cytoskeleton-regu 34.3 7.7 0.00026 23.0 -0.2 18 41-59 51-68 (72)
21 3i1i_A Homoserine O-acetyltran 31.7 15 0.00052 25.2 1.0 32 42-73 130-161 (377)
22 2b61_A Homoserine O-acetyltran 31.0 21 0.00072 24.7 1.7 34 41-74 136-169 (377)
23 3ipw_A Hydrolase TATD family p 30.0 45 0.0015 24.6 3.3 47 20-66 148-204 (325)
24 2ebk_A RWD domain-containing p 27.8 64 0.0022 19.8 3.4 47 9-55 72-121 (128)
25 2jt1_A PEFI protein; solution 27.7 61 0.0021 18.8 3.1 29 19-47 1-33 (77)
26 3vba_A Isopropylmalate/citrama 27.5 22 0.00075 24.3 1.2 16 55-70 50-65 (176)
27 2zyc_A Peptidoglycan hydrolase 25.4 1E+02 0.0035 20.4 4.3 31 19-49 1-33 (170)
28 3icx_A PRE mRNA splicing prote 24.2 89 0.003 22.5 4.0 38 16-53 89-126 (255)
29 2hcu_A 3-isopropylmalate dehyd 23.9 34 0.0011 24.1 1.6 16 55-70 82-97 (213)
30 1u84_A Hypothetical protein; s 23.4 61 0.0021 19.7 2.6 29 30-58 36-64 (90)
31 2ozb_B U4/U6 small nuclear rib 23.2 96 0.0033 22.3 4.0 38 16-53 103-140 (260)
32 2yz0_A Serine/threonine-protei 23.0 1.4E+02 0.0048 18.4 4.8 46 9-54 78-127 (138)
33 2day_A Ring finger protein 25; 22.7 1.4E+02 0.0047 18.2 5.7 47 9-55 75-125 (128)
34 2pkp_A Homoaconitase small sub 22.7 31 0.0011 23.3 1.2 15 56-70 49-63 (170)
35 4fz4_A 0197-18KD, uncharacteri 22.5 1.6E+02 0.0054 19.7 4.6 31 28-58 86-116 (154)
36 3m6z_A Topoisomerase V; helix- 22.5 88 0.003 22.6 3.6 36 19-54 286-321 (380)
37 3frr_A Uncharacterized protein 22.5 61 0.0021 22.3 2.7 41 17-59 92-133 (191)
38 3sty_A Methylketone synthase 1 21.6 49 0.0017 21.3 2.0 32 42-73 64-95 (267)
39 2xzr_A Immunoglobulin-binding 21.1 93 0.0032 19.5 3.0 28 22-50 77-104 (114)
40 2dst_A Hypothetical protein TT 20.8 63 0.0022 19.1 2.3 30 43-73 65-94 (131)
41 1ukx_A GCN2, GCN2 EIF2alpha ki 20.6 1.5E+02 0.005 18.2 4.1 50 9-58 79-132 (137)
42 2k42_B Espfu; WAsp, GBD, autoi 20.5 48 0.0016 16.9 1.4 11 43-53 6-16 (36)
43 1qwg_A PSL synthase;, (2R)-pho 20.2 2.3E+02 0.008 20.2 5.5 48 16-66 108-169 (251)
No 1
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-43 Score=226.28 Aligned_cols=87 Identities=48% Similarity=0.901 Sum_probs=84.7
Q ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEE
Q psy14814 9 SKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIA 88 (100)
Q Consensus 9 ~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~ 88 (100)
..+++|+.+|||++||++|+++|.+|+++++++++||++||++||++|||+||||||++|||++||++++||||++|+++
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~a 90 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLA 90 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEE
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEE
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeC
Q psy14814 89 ILVFKSG 95 (100)
Q Consensus 89 vLl~kt~ 95 (100)
||||||+
T Consensus 91 iLlfKtg 97 (97)
T 4ds1_A 91 FLVFKTA 97 (97)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 2
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=7.8e-43 Score=222.30 Aligned_cols=86 Identities=51% Similarity=1.038 Sum_probs=84.3
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI 89 (100)
Q Consensus 10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v 89 (100)
.+++|+.+|||++||++|+++|.+|+++++.+++||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus 4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~i 83 (89)
T 3rjs_A 4 RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAV 83 (89)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeC
Q psy14814 90 LVFKSG 95 (100)
Q Consensus 90 Ll~kt~ 95 (100)
|||||+
T Consensus 84 LlfKtg 89 (89)
T 3rjs_A 84 LLFKSG 89 (89)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999995
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=7.5e-42 Score=222.58 Aligned_cols=90 Identities=53% Similarity=1.007 Sum_probs=83.9
Q ss_pred CCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC
Q psy14814 6 NVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLD 85 (100)
Q Consensus 6 ~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~ 85 (100)
+..+++++|+.+|||++||++|+++|.+|+++++++++||++||++||++|||+||||||++|||+|||++++||||++|
T Consensus 13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g 92 (102)
T 1yo3_A 13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG 92 (102)
T ss_dssp -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET
T ss_pred ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEEC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeeC
Q psy14814 86 KIAILVFKSG 95 (100)
Q Consensus 86 ~~~vLl~kt~ 95 (100)
+++||||||+
T Consensus 93 ~~aiLlfKt~ 102 (102)
T 1yo3_A 93 QVAILLFKSG 102 (102)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEecC
Confidence 9999999985
No 4
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.53 E-value=11 Score=25.47 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCch----------------HHHHHHHHHHhcccCCC
Q psy14814 6 NVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVE----------------KDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 6 ~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~----------------~diA~~IK~~lD~~yG~ 58 (100)
.+|+.++.. .+.++-++.+.+ ++..+|+++++.. -|+++.+|+.+|+.|++
T Consensus 62 sV~l~KVkf-~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 62 CVHLRKVKF-QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp SSCTTSCCT-TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCcHhhhcc-CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 344444422 677788877776 7778888887631 37899999999999975
No 5
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=59.70 E-value=24 Score=27.25 Aligned_cols=47 Identities=11% Similarity=0.376 Sum_probs=35.6
Q ss_pred HHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 46 MYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 46 ~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
+....++++-|+..|++|.-.+ .. +++.++-+.+++..++|||..+.
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~dG 91 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQKDQ 91 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECCCC
Confidence 3556888999999999986553 32 34667778899999999997543
No 6
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=59.47 E-value=4.7 Score=20.47 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhcc
Q psy14814 41 EKDIAMYIKTQLDK 54 (100)
Q Consensus 41 ~~diA~~IK~~lD~ 54 (100)
+.+||.+||++.|+
T Consensus 23 ~g~iat~ik~~c~k 36 (37)
T 1eci_A 23 SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhcc
Confidence 56899999999886
No 7
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=57.41 E-value=3.8 Score=20.52 Aligned_cols=14 Identities=50% Similarity=0.567 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhcc
Q psy14814 41 EKDIAMYIKTQLDK 54 (100)
Q Consensus 41 ~~diA~~IK~~lD~ 54 (100)
+.+||.+||++.|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 46799999999875
No 8
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=54.34 E-value=13 Score=23.91 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHh--CCch--HHHHHHHHHHhcccCCCceE
Q psy14814 18 DMTVDMEKETIRFAQDAIAK--YKVE--KDIAMYIKTQLDKTYEPTWH 61 (100)
Q Consensus 18 dM~~~mq~~~~~~a~~a~~~--~~~~--~diA~~IK~~lD~~yG~~Wh 61 (100)
||-.|.+..+-=++.-...+ .+.. ...++.|...|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666555554444444444 2222 34688899999999999998
No 9
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=53.76 E-value=33 Score=25.96 Aligned_cols=46 Identities=9% Similarity=0.288 Sum_probs=34.0
Q ss_pred HHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....++++-|...|++|.-.+ .. +++.++-+.+++..++|||..+.
T Consensus 24 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~G 70 (447)
T 2bmo_A 24 LFQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQNDG 70 (447)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECCCC
Confidence 446678888899999975432 22 35678888999999999997543
No 10
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=52.63 E-value=35 Score=25.90 Aligned_cols=46 Identities=9% Similarity=0.339 Sum_probs=33.6
Q ss_pred HHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....+++.-|...|++|.-.+ .. +++.++-+.+++..|+|||..+.
T Consensus 25 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~G 71 (454)
T 2gbw_A 25 VYALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQSDG 71 (454)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEcCCC
Confidence 445677888899999975432 32 34677788899999999997543
No 11
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=52.52 E-value=21 Score=19.16 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccC
Q psy14814 21 VDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTY 56 (100)
Q Consensus 21 ~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~y 56 (100)
+.++++|++..+.-+++.+ ++|-..|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 4578888888888887654 468889999987764
No 12
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=51.22 E-value=37 Score=25.74 Aligned_cols=47 Identities=11% Similarity=0.252 Sum_probs=36.1
Q ss_pred HHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 46 MYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 46 ~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
+....++++-|...|++|.-.+ .. ++|.++-+.+++..++|||..+.
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~dG 77 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSRDG 77 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCCC
Confidence 4556788899999999986543 32 35778888999999999997543
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=50.72 E-value=39 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.419 Sum_probs=33.7
Q ss_pred HHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....+++.-|...|++|.-.+ .. +++.++-+.+++..++|||..+.
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~~G 89 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQKNG 89 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcCCC
Confidence 456778888999999975432 32 34667778899999999997543
No 14
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=49.74 E-value=44 Score=25.50 Aligned_cols=46 Identities=11% Similarity=0.347 Sum_probs=33.4
Q ss_pred HHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 47 YIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 47 ~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
....+++.-|...|++|.-.+ +. +++.++-+.+++..++|||..+.
T Consensus 33 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~~G 79 (470)
T 2b1x_A 33 VHDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDEGG 79 (470)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcCCC
Confidence 345677778899999975432 32 34667788899999999997544
No 15
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=48.10 E-value=11 Score=24.36 Aligned_cols=42 Identities=12% Similarity=0.292 Sum_probs=32.0
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCch----------------HHHHHHHHHHhcccCCC
Q psy14814 16 ASDMTVDMEKETIRFAQDAIAKYKVE----------------KDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a~~~~~~~----------------~diA~~IK~~lD~~yG~ 58 (100)
.+.++-++.+.+ +...+|+++++.. -++++.+|+.+|+.|++
T Consensus 54 ~a~~e~e~~~N~-k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 54 QAKLEHEYIQNF-KILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp TCCSHHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC
Confidence 666777766665 6777888887631 36899999999999975
No 16
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=47.93 E-value=47 Score=25.17 Aligned_cols=47 Identities=9% Similarity=0.334 Sum_probs=36.2
Q ss_pred HHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCC
Q psy14814 46 MYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSM 97 (100)
Q Consensus 46 ~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~ 97 (100)
+....++++-|...|++|.-.+ .. ++|.++-+.+++..++|||..+.
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~dG 75 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGADN 75 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCCC
Confidence 4556788889999999987553 32 35678888999999999997554
No 17
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=37.82 E-value=8.3 Score=24.51 Aligned_cols=43 Identities=9% Similarity=0.315 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCch-HHH--------------HHHHHHHhcccCCCceEE
Q psy14814 20 TVDMEKETIRFAQDAIAKYKVE-KDI--------------AMYIKTQLDKTYEPTWHC 62 (100)
Q Consensus 20 ~~~mq~~~~~~a~~a~~~~~~~-~di--------------A~~IK~~lD~~yG~~Whc 62 (100)
++.--..++++...++.+++.+ -.+ ..+|..-.-..-+|.|||
T Consensus 6 s~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 6 SQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 4444455677777777777642 222 223333223456789986
No 18
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=35.12 E-value=45 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=32.5
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhccc
Q psy14814 16 ASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKT 55 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~ 55 (100)
.+||+++..+.|...|.+.++-+..-+.+.++|+..+.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888999999998887777788999999888763
No 19
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=34.66 E-value=16 Score=23.80 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCch--HHHHHHHHHHhcccCCCce
Q psy14814 18 DMTVDMEKETIRFAQDAIAKYKVE--KDIAMYIKTQLDKTYEPTW 60 (100)
Q Consensus 18 dM~~~mq~~~~~~a~~a~~~~~~~--~diA~~IK~~lD~~yG~~W 60 (100)
.|-.|.+..+-=++.-...+.+.. ..+++.|...|-++|-+.|
T Consensus 7 ~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HW 51 (130)
T 2z15_A 7 GMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHW 51 (130)
T ss_dssp CSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455554444433333333333332 3478889999999999999
No 20
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=34.35 E-value=7.7 Score=22.98 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhcccCCCc
Q psy14814 41 EKDIAMYIKTQLDKTYEPT 59 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~ 59 (100)
+-||- .|.+.+|++||+.
T Consensus 51 eGDII-rVmk~l~~k~~r~ 68 (72)
T 3idw_A 51 EGDIV-RVMKHLDKKFGRE 68 (72)
T ss_dssp HHHHH-HHHHHHHHHTTC-
T ss_pred hhhHH-HHHHHHHHHhCcC
Confidence 55665 5778889999864
No 21
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=31.69 E-value=15 Score=25.24 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcceeEE
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vt 73 (100)
.++|+.|..-+|..-....+++||.|+|+.+.
T Consensus 130 ~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 130 LDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp HHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 45666777666654445566799999998765
No 22
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=30.96 E-value=21 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCcceeEEE
Q psy14814 41 EKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTH 74 (100)
Q Consensus 41 ~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth 74 (100)
..++++.|..-++..-....+++||.|+|+.++.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 3456667776666544456677999999987653
No 23
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=30.00 E-value=45 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.037 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHh-CCc---------hHHHHHHHHHHhcccCCCceEEEEeC
Q psy14814 20 TVDMEKETIRFAQDAIAK-YKV---------EKDIAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 20 ~~~mq~~~~~~a~~a~~~-~~~---------~~diA~~IK~~lD~~yG~~WhciVG~ 66 (100)
+.+.|+++.+...++-++ ++. ..++.+.||+.-...-++..||.-|.
T Consensus 148 ~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs 204 (325)
T 3ipw_A 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGT 204 (325)
T ss_dssp CHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 568999999888888888 653 46788888876544445566665554
No 24
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.84 E-value=64 Score=19.84 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHhccc
Q psy14814 9 SKPTKIKASDMTVDMEKETIRFAQDAIAKYKVE---KDIAMYIKTQLDKT 55 (100)
Q Consensus 9 ~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~---~diA~~IK~~lD~~ 55 (100)
.|.+.+....++...+..+.+...+..+.+.-+ -++++.||..++..
T Consensus 72 ~P~i~l~~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 121 (128)
T 2ebk_A 72 LPGISINSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHI 121 (128)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHH
T ss_pred CCeEEEEhhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 577888878899999999888888877766422 46788888777553
No 25
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.71 E-value=61 Score=18.76 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHh---CCc-hHHHHHH
Q psy14814 19 MTVDMEKETIRFAQDAIAK---YKV-EKDIAMY 47 (100)
Q Consensus 19 M~~~mq~~~~~~a~~a~~~---~~~-~~diA~~ 47 (100)
|+...++.|++.+.+.++. ++. -+|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH
Confidence 7778888999988888766 332 4566644
No 26
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=27.50 E-value=22 Score=24.27 Aligned_cols=16 Identities=31% Similarity=0.518 Sum_probs=11.9
Q ss_pred cCCCceEEEEeCCcce
Q psy14814 55 TYEPTWHCIVGRNFGS 70 (100)
Q Consensus 55 ~yG~~WhciVG~~Fgs 70 (100)
++-+.+=+|+|+||||
T Consensus 50 ~~~~g~IlVaG~NFG~ 65 (176)
T 3vba_A 50 KVKPGDIIVGGKNFGC 65 (176)
T ss_dssp HCCTTCEEEECTTBTB
T ss_pred hcCCCCEEEeCCCccC
Confidence 4445677888889986
No 27
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=25.40 E-value=1e+02 Score=20.44 Aligned_cols=31 Identities=19% Similarity=0.066 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchHH--HHHHHH
Q psy14814 19 MTVDMEKETIRFAQDAIAKYKVEKD--IAMYIK 49 (100)
Q Consensus 19 M~~~mq~~~~~~a~~a~~~~~~~~d--iA~~IK 49 (100)
|+++..+.+...|.++.++++.... ||+.|-
T Consensus 1 ~~~~FI~~~~~~A~~~~~~~gI~~sv~lAQA~L 33 (170)
T 2zyc_A 1 MAQAFVDATWPQAAKAAQSLGVPAHFLVAQAAL 33 (170)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7889999999999999999987655 577764
No 28
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=24.23 E-value=89 Score=22.47 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=29.1
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhc
Q psy14814 16 ASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD 53 (100)
..+++++..+.|.+.|...++-...-+++.++|+..+.
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~ 126 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMK 126 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888888888887776666777888877664
No 29
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=23.87 E-value=34 Score=24.05 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=13.0
Q ss_pred cCCCceEEEEeCCcce
Q psy14814 55 TYEPTWHCIVGRNFGS 70 (100)
Q Consensus 55 ~yG~~WhciVG~~Fgs 70 (100)
+|.+..-+|+|++|||
T Consensus 82 ~~~~~~IlvaG~NfGc 97 (213)
T 2hcu_A 82 EYREASILITGDNFGA 97 (213)
T ss_dssp GGTTCCEEEECSSBTC
T ss_pred hhcCCcEEEecCCCCC
Confidence 4667788899999986
No 30
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=23.38 E-value=61 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=20.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhcccCCC
Q psy14814 30 FAQDAIAKYKVEKDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 30 ~a~~a~~~~~~~~diA~~IK~~lD~~yG~ 58 (100)
.+.+++...++...+|+.|+.-|...||.
T Consensus 36 ~Iv~av~~~d~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 36 SVLQAVYETEDARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 34455566666778999999887776653
No 31
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=23.15 E-value=96 Score=22.27 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=30.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhc
Q psy14814 16 ASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD 53 (100)
..+++++..+.|...|...++-...-+++.++|+..+.
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~ 140 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASKHRIYEYVESRMS 140 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889988888999988888777666778888877664
No 32
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=23.00 E-value=1.4e+02 Score=18.41 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=33.3
Q ss_pred CCCcEEEeC-CCCHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHhcc
Q psy14814 9 SKPTKIKAS-DMTVDMEKETIRFAQDAIAKYKV---EKDIAMYIKTQLDK 54 (100)
Q Consensus 9 ~~~i~v~~~-dM~~~mq~~~~~~a~~a~~~~~~---~~diA~~IK~~lD~ 54 (100)
.|.+.+... .++...+..+.+...+..+.+.- --++++.+|..|+.
T Consensus 78 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 127 (138)
T 2yz0_A 78 APEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDE 127 (138)
T ss_dssp CCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHH
Confidence 466777665 49988888888887777776543 24678888887754
No 33
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=22.74 E-value=1.4e+02 Score=18.17 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=35.0
Q ss_pred CCCcEEEeC-CCCHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHhccc
Q psy14814 9 SKPTKIKAS-DMTVDMEKETIRFAQDAIAKYKV---EKDIAMYIKTQLDKT 55 (100)
Q Consensus 9 ~~~i~v~~~-dM~~~mq~~~~~~a~~a~~~~~~---~~diA~~IK~~lD~~ 55 (100)
.|.+.+... .++......+.+...+..+.+.- --++++.++..|...
T Consensus 75 ~P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 75 VPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGP 125 (128)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 566777766 59998888888877777766543 357899999999764
No 34
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=22.68 E-value=31 Score=23.26 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.8
Q ss_pred CCCceEEEEeCCcce
Q psy14814 56 YEPTWHCIVGRNFGS 70 (100)
Q Consensus 56 yG~~WhciVG~~Fgs 70 (100)
+-+.|-+|.|++|||
T Consensus 49 ~~~~~iivaG~nfG~ 63 (170)
T 2pkp_A 49 VKEGDVIVAGENFGC 63 (170)
T ss_dssp CCTTCEEEECTTBTB
T ss_pred CCCCCEEEecCCCCC
Confidence 445788889999986
No 35
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=22.54 E-value=1.6e+02 Score=19.69 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhcccCCC
Q psy14814 28 IRFAQDAIAKYKVEKDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 28 ~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~ 58 (100)
.+.+..-.++|++..+|-+.+|..|.+.+|+
T Consensus 86 tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 86 IRQVAELRKKYPGDNTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhhcccc
Confidence 3455555788999888888888777777654
No 36
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=22.46 E-value=88 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc
Q psy14814 19 MTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDK 54 (100)
Q Consensus 19 M~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~ 54 (100)
|-..+.+.|+++|.+..+.|+.-.|+|-.+.+-||-
T Consensus 286 mrryleqrivecalklqdrygiredvalclarafdg 321 (380)
T 3m6z_A 286 MRRYLEQRIVECALKLQDRYGIREDVALCLARAFDG 321 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHhCC
Confidence 445678899999999999999999999888888873
No 37
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=22.45 E-value=61 Score=22.26 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHhcccCCCc
Q psy14814 17 SDMTVDMEKETIRFAQDAIAKY-KVEKDIAMYIKTQLDKTYEPT 59 (100)
Q Consensus 17 ~dM~~~mq~~~~~~a~~a~~~~-~~~~diA~~IK~~lD~~yG~~ 59 (100)
.++|+++.+.|..++-.| ..+ ++-.|+. .|+..|-.|||..
T Consensus 92 k~cp~~l~EAvsslIyAa-~R~~~elpEL~-~ir~~l~~KyGke 133 (191)
T 3frr_A 92 KELDSGLAESVSTLIWAA-PRLQSEVAELK-IVADQLCAKYSKE 133 (191)
T ss_dssp SSCCGGGHHHHHHHHHHH-HHHTTTCHHHH-HHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHhh-hcccccChHHH-HHHHHHHHHhCHH
Confidence 367888777665555544 444 6667776 7889999999864
No 38
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=21.58 E-value=49 Score=21.28 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCcceeEE
Q psy14814 42 KDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73 (100)
Q Consensus 42 ~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vt 73 (100)
.+.++.|...++...+..=-++||.|+|+.+.
T Consensus 64 ~~~~~~~~~~l~~l~~~~~~~lvGhS~Gg~ia 95 (267)
T 3sty_A 64 SDYLSPLMEFMASLPANEKIILVGHALGGLAI 95 (267)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEEEEETTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEcHHHHHH
Confidence 46788888888887323445789999998664
No 39
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.05 E-value=93 Score=19.46 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy14814 22 DMEKETIRFAQDAIAKYKVEKDIAMYIKT 50 (100)
Q Consensus 22 ~mq~~~~~~a~~a~~~~~~~~diA~~IK~ 50 (100)
+|++.+-+.+.-+-+.|-.++++| .||+
T Consensus 77 EMKq~aaqsaaLlsk~yh~ene~a-r~kk 104 (114)
T 2xzr_A 77 EMKQIEDKIEEILSKIYHIENEIA-RIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH-HHHH
Confidence 455555555555556677778877 4444
No 40
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=20.76 E-value=63 Score=19.07 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcccCCCceEEEEeCCcceeEE
Q psy14814 43 DIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73 (100)
Q Consensus 43 diA~~IK~~lD~~yG~~WhciVG~~Fgs~vt 73 (100)
+.++.+...++..-.... .+||.|+|+.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a 94 (131)
T 2dst_A 65 ELAHFVAGFAVMMNLGAP-WVLLRGLGLALG 94 (131)
T ss_dssp HHHHHHHHHHHHTTCCSC-EEEECGGGGGGH
T ss_pred HHHHHHHHHHHHcCCCcc-EEEEEChHHHHH
Confidence 345555555544322333 478999998764
No 41
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=20.65 E-value=1.5e+02 Score=18.22 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=34.6
Q ss_pred CCCcEEE-eCCCCHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHhcccCCC
Q psy14814 9 SKPTKIK-ASDMTVDMEKETIRFAQDAIAKYKV---EKDIAMYIKTQLDKTYEP 58 (100)
Q Consensus 9 ~~~i~v~-~~dM~~~mq~~~~~~a~~a~~~~~~---~~diA~~IK~~lD~~yG~ 58 (100)
.|.+.+. ...++...+..+.+...+..+.+.- --++++.+|..|+...-|
T Consensus 79 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~p 132 (137)
T 1ukx_A 79 VPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKS 132 (137)
T ss_dssp CCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCC
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcCCC
Confidence 5677774 4478887777777777666665432 357899999999875433
No 42
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=20.55 E-value=48 Score=16.87 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=8.9
Q ss_pred HHHHHHHHHhc
Q psy14814 43 DIAMYIKTQLD 53 (100)
Q Consensus 43 diA~~IK~~lD 53 (100)
.|||.||+.|-
T Consensus 6 pIAQaLk~HLA 16 (36)
T 2k42_B 6 DVAQRLMQHLA 16 (36)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48999998884
No 43
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=20.18 E-value=2.3e+02 Score=20.22 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=34.8
Q ss_pred eCCCCHHHHHHHHHHHHHH-HHhCC-------------chHHHHHHHHHHhcccCCCceEEEEeC
Q psy14814 16 ASDMTVDMEKETIRFAQDA-IAKYK-------------VEKDIAMYIKTQLDKTYEPTWHCIVGR 66 (100)
Q Consensus 16 ~~dM~~~mq~~~~~~a~~a-~~~~~-------------~~~diA~~IK~~lD~~yG~~WhciVG~ 66 (100)
..+||.+....+++.+.+. +.-.. +-.++.+.+++.||. +.|.|||=.
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEa 169 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEG 169 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEee
Confidence 4689999999999988777 33211 124678889999998 677777743
Done!