RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14814
(100 letters)
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold,
peptide binding, nucle structural protein-transport
protein complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 129 bits (325), Expect = 9e-41
Identities = 42/82 (51%), Positives = 63/82 (76%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
+KASD+T ++++ + ++DA+ KY++E+DIA +K QLD Y TWH IVG+NFGS+VT
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
HE G+F+YFY+ +A LVFK+
Sbjct: 76 HEKGHFVYFYIGPLAFLVFKTA 97
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 125 bits (316), Expect = 2e-39
Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 7/102 (6%)
Query: 1 MADADNVHSKPTK-------IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
M + + H + +K DMT +M+ + I A A+ KY VEKDIA +IK + D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFD 60
Query: 54 KTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
+ Y+PTWHC+VGRNFGS+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct: 61 RKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.008
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 24 EKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
EK+ ++ Q ++ Y + A+ IK ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_M 3oaq_M 3ofa_M 3ofx_M
3ofo_M 3r8o_M 4a2i_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F
1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M 3iyx_M 3iyy_M
3izv_Q* ...
Length = 114
Score = 30.1 bits (69), Expect = 0.044
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 8/40 (20%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKD----IAMYIK 49
+K S+++ + + +T+R D +AK+ VE D I+M IK
Sbjct: 42 VKISELS-EGQIDTLR---DEVAKFVVEGDLRREISMSIK 77
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 25.3 bits (56), Expect = 3.9
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 20 TVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
T D+ + + A + K E I + + LD
Sbjct: 90 TCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural
genomics, montreal-kingston bacterial structural
genomics initiative; 2.16A {Escherichia coli} PDB:
2r1a_A
Length = 159
Score = 25.1 bits (54), Expect = 4.3
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 9 SKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNF 68
+P I++ ++DM+ + F + I K A + +
Sbjct: 7 DQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKP 66
Query: 69 GSFV-THESGNFLYFYLDKI 87
+F ++G + + ++
Sbjct: 67 ATFYQMQDNGKPVEGHASQM 86
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 24.6 bits (54), Expect = 6.0
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 20 TVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
+D ++E I K VE I +
Sbjct: 100 AIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 24.6 bits (54), Expect = 7.0
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 20 TVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
D+ +E A+ + +E I + + + L+
Sbjct: 90 CCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 24.5 bits (54), Expect = 7.7
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 20 TVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
D + A+ K V + I++ + L
Sbjct: 102 ACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 24.5 bits (54), Expect = 8.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 EKETIRFAQDAIAKYKVEKDI 44
+ + I + +AKYKV K
Sbjct: 452 KAQLIAYLSKHLAKYKVPKHF 472
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 24.4 bits (54), Expect = 8.3
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 DMTVDMEKETIRFAQDAIAKYKVEKDI 44
++ F IA+YK K +
Sbjct: 451 GESIA-ADALAEFVASLIARYKKPKHV 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,470,611
Number of extensions: 72763
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)