BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14815
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/336 (56%), Positives = 234/336 (69%), Gaps = 37/336 (11%)
Query: 13 RVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIRLWGK 72
R W ++WNP GT+++SCG D+ I R+WG
Sbjct: 18 RCWFLAWNPAGTLLASCGGDRRI--------------------------------RIWGT 45
Query: 73 ESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEG 132
E G+ + K++LS+GHQRT+R+ AWSPCGN++ASASFDATT +W K FEC TLEG
Sbjct: 46 E--GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG 103
Query: 133 HENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN 192
HENEVKSV W+ +G LATCSRDKSVWVWEV EEDEYEC +V+N+H QDVK V +HP
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 193 ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+LASASYDDTVKL++E+ E DW+ ATL+ H STVWSLAFD G RLA+CSDD TV+IW
Sbjct: 164 LLASASYDDTVKLYREE--EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Query: 253 KEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKE 312
++Y PGN G+ +D WKC+CTLSG H RTIYDI+WC LT +ATACGDDAIR+F+E
Sbjct: 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281
Query: 313 NPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 348
+P + D +F L H+AH+QDVNCVAWNP P
Sbjct: 282 DPNS-DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 53/271 (19%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDK 65
TL+GH+ V +V+W P G ++++C DK++ +W + + YE + L
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL------------- 146
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFE 125
+ H + ++ W P +ASAS+D T ++ + +
Sbjct: 147 ---------------------NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185
Query: 126 CNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE------------VGEEDEYECAA 173
C ATLEGHE+ V S+ + +GQ LA+CS D++V +W G + ++C
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245
Query: 174 VINA-HIQDVKKVRFHPFDNILASASYDDTVKLFKED-KAEADWINFATL----KSHTST 227
++ H + + + + LA+A DD +++F+ED ++ F+ ++H+
Sbjct: 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305
Query: 228 VWSLAFD-RIGSRLATCSDDATVKIWKEYKP 257
V +A++ + LA+CSDD V WK +P
Sbjct: 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 226 STVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRT 285
S W LA++ G+ LA+C D ++IW G+S W C LS H RT
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWG--TEGDS-----------WICKSVLSEGHQRT 63
Query: 286 IYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNP 345
+ ++W + +A+A D I+K+N + F+ V T H +V VAW P
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQD-------DFECV-TTLEGHENEVKSVAWAP 115
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 147/245 (60%), Gaps = 19/245 (7%)
Query: 77 NKFTAKAILSD-GHQRTIRETAWSPCGNFIASASFDATTAVWDK-----RSGQFECNATL 130
+ FT +L + H++ IR AW P + +A+ SFD+T ++W K R+ + + A +
Sbjct: 44 DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103
Query: 131 EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP 189
EGHENEVK V WS +G +LATCSRDKSVW+WE E +EYEC +V+ H QDVK V +HP
Sbjct: 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 190 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGS--RLATCSDDA 247
+ +LAS+SYDDTV+++K+ + DW A L H TVWS FD+ RL + SDD+
Sbjct: 164 SEALLASSSYDDTVRIWKD--YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221
Query: 248 TVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAI 307
TV++WK Y + D+ W C L H R +Y+++W LIA+ D +
Sbjct: 222 TVRVWK-YMGDD------EDDQQEWVCEAILPDVHKRQVYNVAW-GFNGLIASVGADGVL 273
Query: 308 RIFKE 312
+++E
Sbjct: 274 AVYEE 278
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 114/258 (44%), Gaps = 48/258 (18%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKN 66
++GH+ V V+W+ G +++C DK++ +W ET
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIW----------------ET---------- 136
Query: 67 IRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFEC 126
+ G ++ ++L + H + ++ W P +AS+S+D T +W +EC
Sbjct: 137 ------DESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189
Query: 127 NATLEGHENEVKSVTWSKN-GQF-LATCSRDKSVWVWEVGEED-----EYECAAVI-NAH 178
A L GHE V S + K G F L + S D +V VW+ +D E+ C A++ + H
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249
Query: 179 IQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFA--TLKSHTSTVWSLAFDRI 236
+ V V + F+ ++AS D + +++E + +W FA L + + + +
Sbjct: 250 KRQVYNVAW-GFNGLIASVGADGVLAVYEE--VDGEWKVFAKRALCHGVYEINVVKWLEL 306
Query: 237 GSR--LATCSDDATVKIW 252
+ LAT DD V W
Sbjct: 307 NGKTILATGGDDGIVNFW 324
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 187 FHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDD 246
F ILA+ S D +KL + I+ +H + S+A+ S LA S D
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 247 ATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA 306
+TV IW + + + T + D + + GH + ++W + +AT D +
Sbjct: 80 STVSIWAKEESAD----RTFEMD----LLAIIEGHENE-VKGVAWSNDGYYLATCSRDKS 130
Query: 307 IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPEPQKTNLTLHDVVR 362
+ I++ + + + +S + H+QDV V W+P E + + D VR
Sbjct: 131 VWIWETDESGEEYECISV------LQEHSQDVKHVIWHP--SEALLASSSYDDTVR 178
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 153/320 (47%), Gaps = 44/320 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW------VMVIREPYEKLHGL---PVE 55
QTL GH VW V+++P G I+S +DK ++LW + + + G+ P
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 56 TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTA 115
++ +DK ++LW + N + + GH ++ A+SP G IASAS D T
Sbjct: 111 QTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 116 VWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 175
+W+ R+GQ TL GH + V V +S +GQ +A+ S DK+V +W + +
Sbjct: 165 LWN-RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTL 217
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V F P +ASAS D TVKL+ + TL H+S+V +AF
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVNGVAFRP 272
Query: 236 IGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 295
G +A+ SDD TVK+W + + TL+GH +++ +++
Sbjct: 273 DGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHS-SSVWGVAFSPDG 315
Query: 296 DLIATACGDDAIRIFKENPE 315
IA+A D ++++ N +
Sbjct: 316 QTIASASDDKTVKLWNRNGQ 335
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 27/257 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW------VMVIREPYEKLHGL---PVE 55
QTL GH VW V+++P G I+S +DK ++LW + + + G+ P
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 56 TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTA 115
++ +DK ++LW + N + + GH ++ A+SP IASAS D T
Sbjct: 398 QTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 116 VWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 175
+W+ R+GQ TL GH + V+ V +S +GQ +A+ S DK+V +W + +
Sbjct: 452 LWN-RNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTL 504
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V F P +ASAS D TVKL+ + TL H+S+VW +AF
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVWGVAFSP 559
Query: 236 IGSRLATCSDDATVKIW 252
G +A+ S D TVK+W
Sbjct: 560 DGQTIASASSDKTVKLW 576
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 124/259 (47%), Gaps = 40/259 (15%)
Query: 87 DGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNG 146
+ H ++R A+SP G IASAS D T +W+ R+GQ TL GH + V V +S +G
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVWGVAFSPDG 69
Query: 147 QFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF 206
Q +A+ S DK+V +W + + H V+ V F P +ASAS D TVKL+
Sbjct: 70 QTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 207 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 266
+ TL H+S+VW +AF G +A+ SDD TVK+W
Sbjct: 126 NRNGQL-----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------- 170
Query: 267 DNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDL 326
+ + TL+GH +++ +++ IA+A D ++++ N + L
Sbjct: 171 ------QLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------L 213
Query: 327 VHTEHRAHNQDVNCVAWNP 345
+ T H+ V VA++P
Sbjct: 214 LQTL-TGHSSSVRGVAFSP 231
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 26/186 (13%)
Query: 130 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 189
LE H + V+ V +S +GQ +A+ S DK+V +W + + H V V F P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSP 67
Query: 190 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATV 249
+ASAS D TVKL+ + TL H+S+V +AF G +A+ SDD TV
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 250 KIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRI 309
K+W + + TL+GH +++ +++ IA+A D +++
Sbjct: 123 KLWNRNG----------------QLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 310 FKENPE 315
+ N +
Sbjct: 166 WNRNGQ 171
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW------VMVIREPYEKLHGL---PVE 55
QTL GH V V+++P G I+S +DK ++LW + + + G+ P
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 520
Query: 56 TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTA 115
++ +DK ++LW + N + + GH ++ A+SP G IASAS D T
Sbjct: 521 QTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVK 574
Query: 116 VWD 118
+W+
Sbjct: 575 LWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 50/282 (17%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG----------LPV 54
+TLKGH V ++S++ G +++SC D I+LW E +HG +P
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 55 ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ DK I++W ++ + K GH+ +R + G IAS S D T
Sbjct: 204 GDHIVSASRDKTIKMWEVQT---GYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS--------------------KNGQFLATCSR 154
VW + EC A L H + V+ ++W+ K G FL + SR
Sbjct: 259 RVWVVATK--ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 155 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEAD 214
DK++ +W+V C + H V+ V FH + S + D T++++ D
Sbjct: 317 DKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-------D 366
Query: 215 WIN---FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 253
+ N TL +H V SL F + + T S D TVK+W+
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH+ + + P + + SAS DAT VWD +G FE TL+GH + V+ +++ +G+
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK 163
Query: 148 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 207
LA+CS D ++ +W+ +EC ++ H +V V P + + SAS D T+K+++
Sbjct: 164 LLASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 208 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
T H V + ++ G+ +A+CS+D TV++W
Sbjct: 221 VQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 41/255 (16%)
Query: 43 REPYEKLHGLPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG 102
R P ++ PV + + ED I++W E+ + T K GH ++++ ++ G
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISFDHSG 162
Query: 103 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 162
+AS S D T +WD + FEC T+ GH++ V SV+ NG + + SRDK++ +WE
Sbjct: 163 KLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 163 VGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF----KEDKAE------ 212
V + Y C H + V+ VR + ++AS S D TV+++ KE KAE
Sbjct: 221 V--QTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 213 -ADWINFATLKSHTSTVWSLAFD-----RIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 266
+ I++A S++S + + + G L + S D T+K+W
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW-------------- 323
Query: 267 DNDSVWKCVCTLSGH 281
+ S C+ TL GH
Sbjct: 324 -DVSTGMCLMTLVGH 337
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 45/280 (16%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETSLR 59
L GH+ V V ++P +++ S ED I++W + L G + + S +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 60 QLVE---DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 116
L D I+LW + F T GH + + P G+ I SAS D T +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMH-----GHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 117 WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
W+ ++G C T GH V+ V +++G +A+CS D++V VW V + EC A +
Sbjct: 219 WEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELR 273
Query: 177 AHIQDVKKVRFHPFDN--------------------ILASASYDDTVKLFKEDKAEADWI 216
H V+ + + P + L S S D T+K++ +
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----M 329
Query: 217 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 256
TL H + V + F G + +C+DD T+++W +YK
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-DYK 368
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 54/204 (26%)
Query: 175 INAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFD 234
++ H V +V FHP +++ SAS D T+K++ + + + TLK HT +V ++FD
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----RTLKGHTDSVQDISFD 159
Query: 235 RIGSRLATCSDDATVKIW-------------KEYKPGNSAGIPTPDN---------DSVW 272
G LA+CS D T+K+W ++ + + +P D+ +W
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 273 K-----CVCTLSGHHGRTIYDISWCHLT------DLIATACGDDAIRIFKENPEAGDSDM 321
+ CV T +GH W + LIA+ D +R++ +
Sbjct: 220 EVQTGYCVKTFTGHR-------EWVRMVRPNQDGTLIASCSNDQTVRVW----------V 262
Query: 322 VSFDLVHTEHRAHNQDVNCVAWNP 345
V+ E R H V C++W P
Sbjct: 263 VATKECKAELREHRHVVECISWAP 286
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 16 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 68
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 125
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 252 W 252
W
Sbjct: 182 W 182
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 50 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 105 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 159
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 217 TLDNTLKLW-DYSKG--------------KCLKTYTGH 239
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 167 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 223 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 277
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 110
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 111 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 146
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 147 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 202
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 259 VSGSEDNLVYIW 270
>pdb|2GX8|A Chain A, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
pdb|2GX8|B Chain B, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
pdb|2GX8|C Chain C, The Crystal Stucture Of Bacillus Cereus Protein Related To
Nif3
Length = 397
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 358 HDVVRRLEAMAPLSLAEPWDNVGLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGTDLI 417
H+++ E+M P LA D +GL I N K ++++++ +D+T+EV+ EA++ G ++I
Sbjct: 32 HEIISLFESMYPKHLAMEGDKIGLQIGALN--KPVRHVLIALDVTEEVVDEAIQLGANVI 89
Query: 418 IAYHPPIFAPLKRVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQEG 464
IA+HP IF PLK + DK +++ C+ ++IA+Y+ HT D + G
Sbjct: 90 IAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGG 136
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 6 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 58
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 115
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 252 W 252
W
Sbjct: 172 W 172
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 40 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 94
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 95 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 149
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 150 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 207 TLDNTLKLW-DYSKG--------------KCLKTYTGH 229
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 157 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 213 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 267
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 268 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 100
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 101 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 136
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 137 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 192
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 249 VSGSEDNLVYIW 260
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 9 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 61
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 118
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 252 W 252
W
Sbjct: 175 W 175
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 43 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 97
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 98 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 152
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 153 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 210 TLDNTLKLW-DYSKG--------------KCLKTYTGH 232
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 160 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 216 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 270
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 271 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 103
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 104 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 139
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 140 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 195
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 252 VSGSEDNLVYIW 263
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 11 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 63
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 120
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 252 W 252
W
Sbjct: 177 W 177
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 45 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 99
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 100 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 154
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 155 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 212 TLDNTLKLW-DYSKG--------------KCLKTYTGH 234
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 162 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 218 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 272
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 273 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 105
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 106 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 141
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 142 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 197
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 254 VSGSEDNLVYIW 265
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 16 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 68
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 125
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 252 W 252
W
Sbjct: 182 W 182
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 50 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 105 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 159
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 217 TLDNTLKLW-DYSKG--------------KCLKTYTGH 239
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 167 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 223 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 277
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 110
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 111 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 146
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 147 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 202
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 259 VSGSEDNLVYIW 270
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 16 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 68
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 125
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 252 W 252
W
Sbjct: 182 W 182
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 50 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 105 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 159
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 217 TLDNTLKLW-DYSKG--------------KCLKTYTGH 239
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 167 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 223 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 277
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 110
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 111 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 146
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 147 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 202
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 259 VSGSEDNLVYIW 270
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 10 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 62
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 119
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 252 W 252
W
Sbjct: 176 W 176
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 44 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 99 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 153
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 211 TLDNTLKLW-DYSKG--------------KCLKTYTGH 233
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 161 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 217 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 271
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 104
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 105 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 140
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 141 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 196
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 253 VSGSEDNLVYIW 264
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 10 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 62
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 119
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 252 W 252
W
Sbjct: 176 W 176
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 44 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 99 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 153
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 211 TLDNTLKLW-DYSKG--------------KCLKTYTGH 233
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 161 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 217 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 271
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 104
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 105 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 140
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 141 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 196
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 253 VSGSEDNLVYIW 264
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 15 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 67
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 124
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 252 W 252
W
Sbjct: 181 W 181
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 49 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 103
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 104 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 158
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 159 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 216 TLDNTLKLW-DYSKG--------------KCLKTYTGH 238
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 166 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 222 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 276
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 277 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 109
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 110 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 145
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 146 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 201
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 258 VSGSEDNLVYIW 269
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 32 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 84
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 141
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 252 W 252
W
Sbjct: 198 W 198
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 66 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 120
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 121 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 175
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 233 TLDNTLKLW-DYSKG--------------KCLKTYTGH 255
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 239 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 293
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 294 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 126
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 127 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 162
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 163 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 218
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AFDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 275 VSGSEDNLVYIW 286
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 27 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 79
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 136
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 252 W 252
W
Sbjct: 193 W 193
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 61 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 115
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 116 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 170
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 171 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 228 TLDNTLKLW-DYSKG--------------KCLKTYTGH 250
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 178 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 234 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 288
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 289 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 121
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 122 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 157
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 158 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 213
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 270 VSGSEDNLVYIW 281
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 34 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 86
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 143
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 252 W 252
W
Sbjct: 200 W 200
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 68 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 122
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 123 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 177
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 235 TLDNTLKLW-DYSKG--------------KCLKTYTGH 257
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 185 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 241 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 295
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 296 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 128
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 129 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 164
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 165 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 220
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AFDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 277 VSGSEDNLVYIW 288
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 13 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 65
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 122
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 252 W 252
W
Sbjct: 179 W 179
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 47 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 102 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 156
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 214 TLDNTLKLW-DYSKG--------------KCLKTYTGH 236
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 220 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 274
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSD 314
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 129/316 (40%), Gaps = 70/316 (22%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 107
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 108 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 143
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 144 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 199
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 241 ATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD-LIA 299
+ S+D V IW N + V L GH I + CH T+ +IA
Sbjct: 256 VSGSEDNLVYIW---------------NLQTKEIVQKLQGHTDVVIS--TACHPTENIIA 298
Query: 300 TAC--GDDAIRIFKEN 313
+A D I+++K +
Sbjct: 299 SAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++AS+S D +W G+FE T+
Sbjct: 13 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS 65
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 122
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 252 W 252
W
Sbjct: 179 W 179
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 220 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 274
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KLFK D
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKSD 314
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 140/325 (43%), Gaps = 48/325 (14%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETS-------- 57
TL GH V +V ++P G ++S DK I++W + + + G + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 58 --LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTA 115
L +DK +++W S T K GH + ++P N I S SFD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 116 VWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAV 174
+WD ++G+ C TL H + V +V ++++G + + S D +W+ +C +
Sbjct: 136 IWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTL 190
Query: 175 INAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA-- 232
I+ V V+F P + +A+ D+T+KL+ K + T H + + +
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFAN 246
Query: 233 FDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
F G + + + S+D V IW N + V L GH I +
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW---------------NLQTKEIVQKLQGHTDVVIS--TA 289
Query: 292 CHLTD-LIATAC--GDDAIRIFKEN 313
CH T+ +IA+A D I++FK +
Sbjct: 290 CHPTENIIASAALENDKTIKLFKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH + + +SP G ++AS+S D +W G+FE T+ GH+ + V WS +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSN 81
Query: 148 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 207
L + S DK++ +W+V +C + H V F+P N++ S S+D++V+++
Sbjct: 82 LLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 208 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ TL +H+ V ++ F+R GS + + S D +IW
Sbjct: 139 VKTG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 47 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V C + AH V
Sbjct: 102 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVS 156
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 214 TLDNTLKLW-DYSKG--------------KCLKTYTGH 236
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW----VMVIR------EPYEKLHGLPV 54
+TLKGH V+ ++NPQ +I S D+++R+W M ++ +P +H
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 55 ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 220 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EI 274
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 107
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G
Sbjct: 108 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM- 143
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 144 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 199
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 256 VSGSEDNMVYIW 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 129 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 188
TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGISDVAWS 77
Query: 189 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDAT 248
N+L SAS D T+K++ + TLK H++ V+ F+ + + + S D +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 249 VKIW 252
V+IW
Sbjct: 134 VRIW 137
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 169 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTV 228
Y + H + V V+F P LAS+S D +K++ + + T+ H +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGI 71
Query: 229 WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYD 288
+A+ + L + SDD T+KIW + S KC+ TL G H ++
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFC 115
Query: 289 ISWCHLTDLIATACGDDAIRI 309
++ ++LI + D+++RI
Sbjct: 116 CNFNPQSNLIVSGSFDESVRI 136
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 220 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 279
TL HT V S+ F G LA+ S D +KIW Y K T+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---------------KFEKTIS 65
Query: 280 GHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVN 339
GH I D++W ++L+ +A D ++I+ D+ S + T + H+ V
Sbjct: 66 GHK-LGISDVAWSSDSNLLVSASDDKTLKIW---------DVSSGKCLKTL-KGHSNYVF 114
Query: 340 CVAWNP 345
C +NP
Sbjct: 115 CCNFNP 120
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH + + +SP G ++AS+S D +W G+FE T+ GH+ + V WS +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSN 81
Query: 148 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 207
L + S DK++ +W+V +C + H V F+P N++ S S+D++V+++
Sbjct: 82 LLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 208 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ TL +H+ V ++ F+R GS + + S D +IW
Sbjct: 139 VKTG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 47 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V C + AH V
Sbjct: 102 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVS 156
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D +K+W +Y G KC+ T +GH
Sbjct: 214 TLDNDLKLW-DYSKG--------------KCLKTYTGH 236
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW----VMVIR------EPYEKLHGLPV 54
+TLKGH V+ ++NPQ +I S D+++R+W M ++ +P +H
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 55 ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 220 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EI 274
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 107
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G
Sbjct: 108 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM- 143
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 144 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 199
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+ +KL+ K + T H + + + F G + +
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 256 VSGSEDNMVYIW 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 129 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 188
TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGISDVAWS 77
Query: 189 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDAT 248
N+L SAS D T+K++ + TLK H++ V+ F+ + + + S D +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 249 VKIW 252
V+IW
Sbjct: 134 VRIW 137
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 169 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTV 228
Y + H + V V+F P LAS+S D +K++ + + T+ H +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGI 71
Query: 229 WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYD 288
+A+ + L + SDD T+KIW + S KC+ TL G H ++
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFC 115
Query: 289 ISWCHLTDLIATACGDDAIRI 309
++ ++LI + D+++RI
Sbjct: 116 CNFNPQSNLIVSGSFDESVRI 136
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 220 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 279
TL HT V S+ F G LA+ S D +KIW Y K T+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---------------KFEKTIS 65
Query: 280 GHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVN 339
GH I D++W ++L+ +A D ++I+ D+ S + T + H+ V
Sbjct: 66 GHK-LGISDVAWSSDSNLLVSASDDKTLKIW---------DVSSGKCLKTL-KGHSNYVF 114
Query: 340 CVAWNP 345
C +NP
Sbjct: 115 CCNFNP 120
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 72 KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLE 131
K ++ KFT GH + + +SP G ++A++S D +W G+FE T+
Sbjct: 13 KPNYALKFTLA-----GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE--KTIS 65
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD 191
GH+ + V WS + L + S DK++ +W+V +C + H V F+P
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQS 122
Query: 192 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 251
N++ S S+D++V+++ + TL +H+ V ++ F+R GS + + S D +I
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 252 W 252
W
Sbjct: 179 W 179
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK I++WG ++ KF K I GH+ I + AWS N + SAS D T +WD SG+
Sbjct: 47 DKLIKIWG--AYDGKF-EKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
C TL+GH N V ++ + + S D+SV +W+V +C + AH V
Sbjct: 102 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVS 156
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 243
V F+ +++ S+SYD +++ D A + + V + F G +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 244 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
+ D T+K+W +Y G KC+ T +GH
Sbjct: 214 TLDNTLKLW-DYSKG--------------KCLKTYTGH 236
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL--HGLPVE------- 55
+TLKGH V+ ++NPQ +I S D+++R+W + + + L H PV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 56 -TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 114
+ + D R+W S L D + +SP G +I +A+ D T
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 115 AVWDKRSGQFECNATLEGHENEVKSVTWS---KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD G+ C T GH+NE + + G+++ + S D V++W + + E
Sbjct: 220 KLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EI 274
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASY--DDTVKLFKED 209
+ H V HP +NI+ASA+ D T+KL+K D
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 50/252 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T+ GH+ + +V+W+ ++ S +DK +++W + + + L
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-------------- 107
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + ++P N I S SFD + +WD ++G+
Sbjct: 108 -----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 143
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC-AAVINAHIQDVK 183
C TL H + V +V ++++G + + S D +W+ +C +I+ V
Sbjct: 144 -CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVS 199
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLA--FDRIGSR-L 240
V+F P + +A+ D+T+KL+ K + T H + + + F G + +
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 241 ATCSDDATVKIW 252
+ S+D V IW
Sbjct: 256 VSGSEDNLVYIW 267
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 47/289 (16%)
Query: 56 TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDAT 113
T L D++++++ + G A GH+ + + AW+ GN +AS S+D
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADL---RGHEGPVWQVAWAHPMYGNILASCSYDRK 82
Query: 114 TAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKSVWVWEVGEEDEYEC 171
+W + +G +E + GH++ V SV W+ + G LA S D ++ + E ++E
Sbjct: 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142
Query: 172 AAVINAHIQDVKKVRFHP-----------------FDNILASASYDDTVKLFKEDKAEAD 214
+ NAH V + P + AS D+ +KL+KE++ +
Sbjct: 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE-DGQ 201
Query: 215 WINFATLKSHTSTV----WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPT---PD 267
W L++H+ V W+ + S +A+CS D V IW ++ P
Sbjct: 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261
Query: 268 NDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
ND VW +SW +++A + GD+ + ++KE+ +
Sbjct: 262 NDVVWH---------------VSWSITANILAVSGGDNKVTLWKESVDG 295
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 46/263 (17%)
Query: 7 LKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWVMVIRE---PYEKLHGLPVETSLRQL 61
L+GH+G VW V+W +P G +++SC D+ + +W RE +EK H S
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW----REENGTWEKSHEHAGHDSSVNS 108
Query: 62 V----EDKNIRLWGKESFGN----KFTAKAI-----LSDGHQRTIRETAWSPC---GNFI 105
V D + L S G +T + +++ H +W+P G+ I
Sbjct: 109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168
Query: 106 --------------ASASFDATTAVW-DKRSGQFECNATLEGHENEVKSVTWSKNGQF-- 148
AS D +W ++ GQ++ LE H + V+ V W+ +
Sbjct: 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228
Query: 149 --LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKL 205
+A+CS+D V++W + + + DV V + NILA + D+ V L
Sbjct: 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288
Query: 206 FKEDKAEADWINFATLKSHTSTV 228
+KE + W+ + + +V
Sbjct: 289 WKE-SVDGQWVCISDVNKGQGSV 310
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
SH + D G+RLATCS D +VKI + N I D L GH
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKI---FDVRNGGQILIAD----------LRGHE 57
Query: 283 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 340
G ++ ++W H +++A+ D + I++E E G +++ H EH H+ VN
Sbjct: 58 G-PVWQVAWAHPMYGNILASCSYDRKVIIWRE--ENG-----TWEKSH-EHAGHDSSVNS 108
Query: 341 VAWNP 345
V W P
Sbjct: 109 VCWAP 113
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 133 HENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF-HP-F 190
HE+ + G LATCS D+SV +++V + A + H V +V + HP +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 191 DNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF--DRIGSRLATCSDDAT 248
NILAS SYD V +++E+ W H S+V S+ + G LA S D
Sbjct: 71 GNILASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 249 VKI 251
+ +
Sbjct: 129 ISL 131
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 35/271 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLW-------VMVIREPYEKLHGLPVETSLRQLVE--- 63
+ +V ++P G +++ ED+ IR+W VM+++ + ++ L S +LV
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC-GNFIASASFDATTAVWDKRSG 122
D+ +R+W + T + L+ + + A SP G +IA+ S D VWD +G
Sbjct: 186 DRTVRIW------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 123 QF-----ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINA 177
N + GH++ V SV ++++GQ + + S D+SV +W + + + N+
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 178 HIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN-----FATLKSHTSTVWSLA 232
+V + F +A+ D+ + +D+ W L+ H ++V S+A
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 233 FDRIGSRL-------ATCSDDATVKIWKEYK 256
GS L AT S D +IWK K
Sbjct: 360 VAN-GSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 93 IRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 152
IR +SP G F+A+ + D +WD + + L+GHE ++ S+ + +G L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 153 SRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDN-ILASASYDDTVKLFKEDK 210
S D++V +W++ +C+ ++ I+D V V P D +A+ S D V+++ +
Sbjct: 184 SGDRTVRIWDLRTG---QCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 211 A----EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 266
D N + H +V+S+ F R G + + S D +VK+W N + TP
Sbjct: 239 GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 267 DNDSVWKCVCTLSGH 281
++ + C T GH
Sbjct: 298 NSGT---CEVTYIGH 309
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 204 KLFKEDKAEADWINFATLKSHTSTVW--SLAFDRIGSRLATCSDDATVKIWKEYKPGNSA 261
+L + A D N T S +S ++ S+ F G LAT ++D ++IW
Sbjct: 100 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW--------- 150
Query: 262 GIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRI 309
+ K V L GH + IY + + D + + GD +RI
Sbjct: 151 ------DIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSGDRTVRI 191
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 63 EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG 122
+DK IR++ +S KF + GH + ++ G + S S D T VWD + G
Sbjct: 140 DDKMIRVY--DSINKKFLLQL---SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKG 193
Query: 123 QFECNATLEGHENEVK--SVTWSKNGQFLATCSRDKSVWVWEV---------GEEDEYEC 171
C EGH + V+ + KN +++ T SRD ++ VW++ GEE +Y
Sbjct: 194 C--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 172 A-----------AVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFAT 220
V+ H+ V+ V H NI+ S SYD+T+ ++ + + +I
Sbjct: 252 VFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMKCLYI---- 305
Query: 221 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
L HT ++S +D R + S D T++IW
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 40/228 (17%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKN 66
L GH G VW + + G ++S D+ +R+W + G +VE KN
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGS-TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 67 IRLWGKESFGN-----KFTAKAILSD-------------------------GHQRTIRET 96
I+ S N K ++ + D GH ++R
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 97 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 156
S GN + S S+D T VWD Q +C L GH + + S + + + S D
Sbjct: 277 --SGHGNIVVSGSYDNTLIVWD--VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 157 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
++ +W++ + E + H V +R D L SA+ D +++
Sbjct: 333 TIRIWDL---ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR 375
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE--- 63
L GH R+++ ++ + S D IR+W + E L G L +L +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL 365
Query: 64 -----DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD 118
D +IR W + KF+ H T + N + S S + +++
Sbjct: 366 VSAAADGSIRGWDANDYSRKFSYH------HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418
Query: 119 KRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 155
RSG+ +A + +++ SV + K +A +D
Sbjct: 419 LRSGKL-VHANILKDADQIWSVNF-KGKTLVAAVEKD 453
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 63 EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG 122
+DK IR++ +S KF + GH + ++ G + S S D T VWD + G
Sbjct: 140 DDKXIRVY--DSINKKFLLQL---SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKG 193
Query: 123 QFECNATLEGHENEVK--SVTWSKNGQFLATCSRDKSVWVWEV---------GEEDEYEC 171
C EGH + V+ + KN +++ T SRD ++ VW++ GEE +Y
Sbjct: 194 C--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 172 A-----------AVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFAT 220
V+ H V+ V H NI+ S SYD+T+ ++ + + +I
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXKCLYI---- 305
Query: 221 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
L HT ++S +D R + S D T++IW
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 40/228 (17%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKN 66
L GH G VW + + G ++S D+ +R+W + G +VE KN
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGS-TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 67 IRLWGKESFGN-----KFTAKAILSD-------------------------GHQRTIRET 96
I+ S N K ++ + D GH ++R
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 97 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 156
S GN + S S+D T VWD Q +C L GH + + S + + + S D
Sbjct: 277 --SGHGNIVVSGSYDNTLIVWD--VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 157 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
++ +W++ + E + H V +R D L SA+ D +++
Sbjct: 333 TIRIWDL---ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIR 375
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE--- 63
L GH R+++ ++ + S D IR+W + E L G L +L +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFL 365
Query: 64 -----DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD 118
D +IR W + KF+ H T + N + S S + +++
Sbjct: 366 VSAAADGSIRGWDANDYSRKFSYH------HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418
Query: 119 KRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 155
RSG+ +A + +++ SV + K +A +D
Sbjct: 419 LRSGKL-VHANILKDADQIWSVNF-KGKTLVAAVEKD 453
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 124/302 (41%), Gaps = 48/302 (15%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE- 63
+TL GH G VW S + +I S D+ +++W E L+G L E
Sbjct: 153 RTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 210
Query: 64 -------DKNIRLWGKESFGNKFTAKAI-LSDGHQRTIRETAWSPCGNFIASASFDATTA 115
D +R+W E T + + + GH +R + G + S ++D
Sbjct: 211 RVVSGSRDATLRVWDIE------TGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVK 262
Query: 116 VWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 175
VWD + C TL+GH N V S+ + +G + + S D S+ VW+V + C +
Sbjct: 263 VWDPETE--TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV---ETGNCIHTL 315
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKS---HTSTVWSLA 232
H + DNIL S + D TVK++ + TL+ H S V L
Sbjct: 316 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQ 369
Query: 233 FDRIGSRLATCSDDATVKIWK-----------EYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
F++ + + T SDD TVK+W + G S G+ S K VC +
Sbjct: 370 FNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 427
Query: 282 HG 283
+G
Sbjct: 428 NG 429
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 30/183 (16%)
Query: 103 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 162
N I S S D T VW+ +G EC TL GH + V+ + + + + + SRD ++ VW+
Sbjct: 170 NIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWD 225
Query: 163 VGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLK 222
+ + +C V+ H+ V+ V++ + S +YD VK++ + TL+
Sbjct: 226 I---ETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETC----LHTLQ 276
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
HT+ V+SL FD G + + S D ++++W + + GN C+ TL+GH
Sbjct: 277 GHTNRVYSLQFD--GIHVVSGSLDTSIRVW-DVETGN--------------CIHTLTGHQ 319
Query: 283 GRT 285
T
Sbjct: 320 SLT 322
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 96 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 155
T CGN I S S D T VW +G+ C TL GH V S N + R
Sbjct: 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRT 180
Query: 156 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 215
VW E G EC + H V+ + H + + S S D T++++ + +
Sbjct: 181 LKVWNAETG-----ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-- 231
Query: 216 INFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCV 275
L H + V + +D G R+ + + D VK+W P+ ++ C+
Sbjct: 232 --LHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWD------------PETET---CL 272
Query: 276 CTLSGHHGRTIYDISWCHLTDLIATACG--DDAIRI 309
TL GH R +Y + + D I G D +IR+
Sbjct: 273 HTLQGHTNR-VYSLQF----DGIHVVSGSLDTSIRV 303
>pdb|2FYW|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Pneumoniae
pdb|2FYW|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Pneumoniae
pdb|2FYW|C Chain C, Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Pneumoniae
Length = 267
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 359 DVVRRLEAMAPLSLAEPWDNVGLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGTDLII 418
+V++ EA P + D+ GL I K I+ + + +D+ +E + EA+E G DLII
Sbjct: 7 EVIQAYEAFCPQEFSXEGDSRGLQI--GTLDKGIQRVXVALDIREETVAEAIEKGVDLII 64
Query: 419 AYHPPIFAPLKRVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQEG 464
H PIF P+K + + + ++ + H+IAVY HT D ++ G
Sbjct: 65 VKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENG 110
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 14/252 (5%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDK 65
+L+GHQ V +V + + +S D +IRLW + + + + PV+ D
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 66 NIRLWGKES-----FGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
G FG + K D + I A+SP G ++AS + D ++D
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
+G+ TLEGH ++S+T+S + Q L T S D + +++V + A ++ H
Sbjct: 195 TGKLL--HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN---LAGTLSGHAS 249
Query: 181 DVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V V F P D S+S D +VK++ T H VW + ++ GS++
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC----VHTFFDHQDQVWGVKYNGNGSKI 305
Query: 241 ATCSDDATVKIW 252
+ DD + I+
Sbjct: 306 VSVGDDQEIHIY 317
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 31/250 (12%)
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC----GNFIASASFDATTAVWDKR 120
+N+ G +G F + H I AW + + S D VW R
Sbjct: 11 ENLYFQGTNQYGILFKQEQ----AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR 66
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
+ + +LEGH+ V SV S A+ S D + +W++ + + I+A
Sbjct: 67 DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPV 123
Query: 181 DVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
D + F P LA+ ++ V +F + + ++ +L + + S+A+ G L
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY----SLDTRGKFILSIAYSPDGKYL 179
Query: 241 ATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT 300
A+ + D + I+ I T K + TL G H I +++ + L+ T
Sbjct: 180 ASGAIDGIINIFD---------IATG------KLLHTLEG-HAMPIRSLTFSPDSQLLVT 223
Query: 301 ACGDDAIRIF 310
A D I+I+
Sbjct: 224 ASDDGYIKIY 233
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 117/276 (42%), Gaps = 33/276 (11%)
Query: 30 GEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSD-- 87
G+ R WV + P V ++ R DK + WG + L D
Sbjct: 7 GQLTGHRGWVTSLACPQTPETATKVVSTSR----DKTLLSWGPNPDRHSSECSYGLPDRR 62
Query: 88 --GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN 145
GH + + A S GNF SAS+D + +W+ ++GQ C GH +V SV +S +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ--CQYKFLGHTKDVLSVAFSPD 120
Query: 146 GQFLATCSRDKSVWVWEVGEEDEYECAAVIN--AHIQDVKKVRFHPFDN--ILASASYDD 201
+ + + RD ++ VW V + EC ++ AH V VRF P + ++ S +D+
Sbjct: 121 NRQIVSGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 202 TVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW----KEYKP 257
VK++ D A + LK HT+ V S+ GS A+ D ++W E
Sbjct: 177 LVKVW--DLATGRLVT--DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 258 GNSAGIPTP----DNDSVWKCVCTLSGHHGRTIYDI 289
+AG P + W C T G I+D+
Sbjct: 233 EMAAGAPINQICFSPNRYWMCAAT---EKGIRIFDL 265
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-----LPVETSL- 58
+ L+GH V +V+ + G S D ++RLW + + K G L V S
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 59 -RQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF--------IA 106
RQ+V D +R+W K LS G T W C F I
Sbjct: 121 NRQIVSGGRDNALRVWNV-----KGECMHTLSRGAH-----TDWVSCVRFSPSLDAPVIV 170
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV--G 164
S +D VWD +G+ + L+GH N V SVT S +G A+ +D +W++ G
Sbjct: 171 SGGWDNLVKVWDLATGRLVTD--LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 165 EE-DEYECAAVIN 176
E E A IN
Sbjct: 229 EALSEMAAGAPIN 241
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKL-HGLPVETSLRQ----- 60
LKGH V +V+ +P G++ +S +D RLW + E ++ G P+
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYW 251
Query: 61 --LVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE---TAWSPCGNFIASASFDATTA 115
+K IR++ E+ + A G ++ + E AWS G+ + S D
Sbjct: 252 MCAATEKGIRIFDLEN-KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIR 310
Query: 116 VW 117
VW
Sbjct: 311 VW 312
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 35/286 (12%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPY--EKLHGLPVETSL 58
M +TL+GH +++ + W ++ S +D + +W + Y K+H +P+ +S
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSSW 99
Query: 59 RQLV----EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE----TAWSPCGNF-----I 105
+ G ++ + + K +G+ R RE T + C F I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 106 ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
++S D T A+WD +GQ T GH +V S++ + + + + + D S +W+V E
Sbjct: 158 VTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 166 EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHT 225
C H D+ + F P N A+ S D T +LF + +A+ + + + SH
Sbjct: 216 G---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQELMTY----SHD 267
Query: 226 STVW---SLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 268
+ + S++F + G L DD +W K + + DN
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----YEKLHGLPVETSLRQLVEDKNI-- 67
V ++ P G ++ G D ++ + RE +L G S + ++D I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 68 -------RLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
LW E+ T H + + +P S + DA+ +WD R
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
G C T GHE+++ ++ + NG AT S D + ++++ + E + N I
Sbjct: 215 EGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC 271
Query: 181 DVKKVRFHPFDNILASASYDD----TVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V F +L A YDD K D+A L H + V L
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDD 323
Query: 237 GSRLATCSDDATVKIW 252
G +AT S D+ +KIW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD- 181
Q TL GH ++ ++ W + + L + S+D + +W D Y V ++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSS 98
Query: 182 -VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V + P N +A D+ ++ E + L HT + F +++
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQI 157
Query: 241 ATCSDDATVKIW 252
T S D T +W
Sbjct: 158 VTSSGDTTCALW 169
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 35/286 (12%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPY--EKLHGLPVETSL 58
M +TL+GH +++ + W ++ S +D + +W + Y K+H +P+ +S
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSSW 110
Query: 59 RQLV----EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE----TAWSPCGNF-----I 105
+ G ++ + + K +G+ R RE T + C F I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLDDNQI 168
Query: 106 ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
++S D T A+WD +GQ T GH +V S++ + + + + + D S +W+V E
Sbjct: 169 VTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 166 EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHT 225
C H D+ + F P N A+ S D T +LF + +A+ + + + SH
Sbjct: 227 G---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQELMTY----SHD 278
Query: 226 STVW---SLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 268
+ + S++F + G L DD +W K + + DN
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 324
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----YEKLHGLPVETSLRQLVEDKNI-- 67
V ++ P G ++ G D ++ + RE +L G S + ++D I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 68 -------RLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
LW E+ T H + + +P S + DA+ +WD R
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
G C T GHE+++ ++ + NG AT S D + ++++ + E + N I
Sbjct: 226 EGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC 282
Query: 181 DVKKVRFHPFDNILASASYDDTV----KLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V F +L A YDD K D+A L H + V L
Sbjct: 283 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDD 334
Query: 237 GSRLATCSDDATVKIW 252
G +AT S D+ +KIW
Sbjct: 335 GMAVATGSWDSFLKIW 350
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD- 181
Q TL GH ++ ++ W + + L + S+D + +W D Y V ++
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSS 109
Query: 182 -VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V + P N +A D+ ++ E + L HT + F +++
Sbjct: 110 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQI 168
Query: 241 ATCSDDATVKIW 252
T S D T +W
Sbjct: 169 VTSSGDTTCALW 180
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 35/286 (12%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPY--EKLHGLPVETSL 58
M +TL+GH +++ + W ++ S +D + +W + Y K+H +P+ +S
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSSW 99
Query: 59 RQLV----EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE----TAWSPCGNF-----I 105
+ G ++ + + K +G+ R RE T + C F I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 106 ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
++S D T A+WD +GQ T GH +V S++ + + + + + D S +W+V E
Sbjct: 158 VTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 166 EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHT 225
C H D+ + F P N A+ S D T +LF + +A+ + + + SH
Sbjct: 216 G---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQELMTY----SHD 267
Query: 226 STVW---SLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 268
+ + S++F + G L DD +W K + + DN
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----YEKLHGLPVETSLRQLVEDKNI-- 67
V ++ P G ++ G D ++ + RE +L G S + ++D I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 68 -------RLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
LW E+ T H + + +P S + DA+ +WD R
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
G C T GHE+++ ++ + NG AT S D + ++++ + E + N I
Sbjct: 215 EGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC 271
Query: 181 DVKKVRFHPFDNILASASYDDTV----KLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V F +L A YDD K D+A L H + V L
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDD 323
Query: 237 GSRLATCSDDATVKIW 252
G +AT S D+ +KIW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD- 181
Q TL GH ++ ++ W + + L + S+D + +W D Y V ++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-----DSYTTNKVHAIPLRSS 98
Query: 182 -VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V + P N +A D+ ++ E + L HT + F +++
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQI 157
Query: 241 ATCSDDATVKIW 252
T S D T +W
Sbjct: 158 VTSSGDTTCALW 169
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 35/286 (12%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPY--EKLHGLPVETSL 58
M +TL+GH +++ + W ++ S +D + +W + Y K+H +P+ +S
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW-----DSYTTNKVHAIPLRSSW 99
Query: 59 RQLV----EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE----TAWSPCGNF-----I 105
+ G ++ + + K +G+ R RE T + C F I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 106 ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
++S D T A+WD +GQ T GH +V S++ + + + + + D S +W+V E
Sbjct: 158 VTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 166 EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHT 225
C H D+ + F P N A+ S D T +LF + +A+ + + + SH
Sbjct: 216 G---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQELMTY----SHD 267
Query: 226 STVW---SLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 268
+ + S++F + G L DD +W K + + DN
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----YEKLHGLPVETSLRQLVEDKNI-- 67
V ++ P G ++ G D ++ + RE +L G S + ++D I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 68 -------RLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
LW E+ T H + + +P S + DA+ +WD R
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
G C T GHE+++ ++ + NG AT S D + ++++ + E + N I
Sbjct: 215 EGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC 271
Query: 181 DVKKVRFHPFDNILASASYDDTV----KLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V F +L A YDD K D+A L H + V L
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDD 323
Query: 237 GSRLATCSDDATVKIW 252
G +AT S D+ +KIW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD- 181
Q TL GH ++ ++ W + + L + S+D + +W D Y V ++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW-----DSYTTNKVHAIPLRSS 98
Query: 182 -VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V + P N +A D+ ++ E + L HT + F +++
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQI 157
Query: 241 ATCSDDATVKIW 252
T S D T +W
Sbjct: 158 VTSSGDTTCALW 169
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 35/286 (12%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPY--EKLHGLPVETSL 58
M +TL+GH +++ + W ++ S +D + +W + Y K+H +P+ +S
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW-----DSYTTNKVHAIPLRSSW 99
Query: 59 RQLV----EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE----TAWSPCGNF-----I 105
+ G ++ + + K +G+ R RE T + C F I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 106 ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
++S D T A+WD +GQ T GH +V S++ + + + + + D S +W+V E
Sbjct: 158 VTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 166 EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHT 225
C H D+ + F P N A+ S D T +LF + +A+ + + + SH
Sbjct: 216 G---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQELMTY----SHD 267
Query: 226 STVW---SLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 268
+ + S++F + G L DD +W K + + DN
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 14 VWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----YEKLHGLPVETSLRQLVEDKNI-- 67
V ++ P G ++ G D ++ + RE +L G S + ++D I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 68 -------RLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR 120
LW E+ T H + + +P S + DA+ +WD R
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 180
G C T GHE+++ ++ + NG AT S D + ++++ + E + N I
Sbjct: 215 EGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC 271
Query: 181 DVKKVRFHPFDNILASASYDD----TVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V F +L A YDD K D+A L H + V L
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDD 323
Query: 237 GSRLATCSDDATVKIW 252
G +AT S D+ +KIW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD- 181
Q TL GH ++ ++ W + + L + S+D + +W D Y V ++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW-----DSYTTNKVHAIPLRSS 98
Query: 182 -VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 240
V + P N +A D+ ++ E + L HT + F +++
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQI 157
Query: 241 ATCSDDATVKIW 252
T S D T +W
Sbjct: 158 VTSSGDTTCALW 169
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
DK+I LW + GH + + S G F S S+D +WD +G
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
GH +V SV +S + + + + SRD+++ +W E +Y + H V
Sbjct: 464 --STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521
Query: 184 KVRFHP--FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 241
VRF P + SAS+D TVK++ + +TL HT V ++A GS A
Sbjct: 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STLAGHTGYVSTVAVSPDGSLCA 577
Query: 242 TCSDDATVKIW 252
+ D V +W
Sbjct: 578 SGGKDGVVLLW 588
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 19/191 (9%)
Query: 2 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-----LPVET 56
+ + L GH V +V + G S D +RLW + + G L V
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Query: 57 SL--RQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP--CGNFIASAS 109
SL RQ+V D+ I+LW + G + +GH+ + +SP I SAS
Sbjct: 481 SLDNRQIVSASRDRTIKLW--NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 110 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE- 168
+D T VW+ + + +TL GH V +V S +G A+ +D V +W++ E +
Sbjct: 539 WDKTVKVWNLSNCKLR--STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Query: 169 --YECAAVINA 177
E +VI+A
Sbjct: 597 YSLEANSVIHA 607
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 128 ATLEGHENEVKSV-TWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQDVKK 184
T+ H + V ++ T N + + SRDKS+ +W++ ++D+ A + H V+
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 185 VRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCS 244
V S S+D ++L+ A ++ HT V S+AF ++ + S
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWD----LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491
Query: 245 DDATVKIW 252
D T+K+W
Sbjct: 492 RDRTIKLW 499
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
TL GH G V V+ +P G++ +S G+D + LW + +KL+ L + + L
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA---EGKKLYSLEANSVIHALCFS 611
Query: 65 KNIRLW 70
N R W
Sbjct: 612 PN-RYW 616
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 121/294 (41%), Gaps = 42/294 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW-------VMVIREPYEKLHGLPVETSLR 59
+K H+ V +++ + I++C DK +++W V E E+++
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 60 QLV-----EDKNIRLWG---KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD 111
L+ D ++LW KE F GH ++ +SP +AS S D
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMF--------GHTNSVNHCRFSPDDELLASCSAD 764
Query: 112 ATTAVWDKRSGQFECNATL-----------EGHENEVKSVTWSKNGQFLATCSRDKSVWV 160
T +WD RS + + E E VK +WS +G + +++K V +
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLL 823
Query: 161 WEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFAT 220
+++ A + H ++ F P+D++ A V+L+ D + A
Sbjct: 824 FDIHTSGLL--AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVAD 877
Query: 221 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK 273
+ H S V + F GS T SDD T+++W+ K NSA + + D V++
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ 931
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 52/214 (24%)
Query: 2 INSQTLKG--------HQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLP 53
IN +T+K H V++ ++ G I+SCG DK ++++ E EKL +
Sbjct: 598 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---ETGEKLLDIK 654
Query: 54 VETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDAT 113
H+ + A+S ++IA+ S D
Sbjct: 655 ----------------------------------AHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 114 TAVWDKRSGQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD +G+ T + H +V ++ N LAT S D + +W++ ++ EC
Sbjct: 681 VKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK---EC 735
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 205
+ H V RF P D +LAS S D T++L
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH++ +R ++ G + S+S D+ VW+ ++G + L+ H+ VK ++ +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAHQETVKDFRLLQDSR 1057
Query: 148 FLATCSRDKSVWVWEV--GE-EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
L+ S D +V VW V G E ++ C H V +S S D T K
Sbjct: 1058 LLSW-SFDGTVKVWNVITGRIERDFTC------HQGTVLSCAISSDATKFSSTSADKTAK 1110
Query: 205 LFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
++ D LK H V AF G LAT D+ ++IW
Sbjct: 1111 IWSFDLLSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 53/199 (26%)
Query: 167 DEYECAAVINAHIQDVKKVRFH-----PFDNILASASYD-DTVKLFKEDKAEA------- 213
DE +CA N Q+ + H PF NI+ + +T +++++ K +A
Sbjct: 534 DEKDCAVCEN--FQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTG 591
Query: 214 ----DWINFATLKS--------HTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSA 261
+WIN T+K+ HT V+ F + G R+A+C D T++++K
Sbjct: 592 RLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 651
Query: 262 GIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDM 321
I +++ + C S D S+ IAT D ++I+ D
Sbjct: 652 DIKAHEDEVL---CCAFSS-------DDSY------IATCSADKKVKIW---------DS 686
Query: 322 VSFDLVHTEHRAHNQDVNC 340
+ LVHT + H++ VNC
Sbjct: 687 ATGKLVHT-YDEHSEQVNC 704
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 19/202 (9%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH+ V ++ + G + S ED I++W + Y L +L++D +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLL 1059
Query: 69 LW---GKESFGNKFTAKAILSD--GHQRTIRETAWSPCGNFIASASFDATTAVW--DKRS 121
W G N T + I D HQ T+ A S +S S D T +W D S
Sbjct: 1060 SWSFDGTVKVWNVITGR-IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118
Query: 122 GQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINA---- 177
E L+GH V+ +S +G LAT + + +W V + A I+
Sbjct: 1119 PLHE----LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 178 --HIQDVKKVRFHPFDNILASA 197
H V V F P L SA
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVSA 1196
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 121/294 (41%), Gaps = 42/294 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW-------VMVIREPYEKLHGLPVETSLR 59
+K H+ V +++ + I++C DK +++W V E E+++
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 60 QLV-----EDKNIRLWG---KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD 111
L+ D ++LW KE F GH ++ +SP +AS S D
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMF--------GHTNSVNHCRFSPDDELLASCSAD 771
Query: 112 ATTAVWDKRSGQFECNATL-----------EGHENEVKSVTWSKNGQFLATCSRDKSVWV 160
T +WD RS + + E E VK +WS +G + +++K V +
Sbjct: 772 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLL 830
Query: 161 WEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFAT 220
+++ A + H ++ F P+D++ A V+L+ D + A
Sbjct: 831 FDIHTSGLL--AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVAD 884
Query: 221 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK 273
+ H S V + F GS T SDD T+++W+ K NSA + + D V++
Sbjct: 885 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ 938
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 52/214 (24%)
Query: 2 INSQTLKG--------HQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLP 53
IN +T+K H V++ ++ G I+SCG DK ++++ E EKL +
Sbjct: 605 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---ETGEKLLDIK 661
Query: 54 VETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDAT 113
H+ + A+S ++IA+ S D
Sbjct: 662 ----------------------------------AHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 114 TAVWDKRSGQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYEC 171
+WD +G+ T + H +V ++ N LAT S D + +W++ ++ EC
Sbjct: 688 VKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK---EC 742
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 205
+ H V RF P D +LAS S D T++L
Sbjct: 743 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH++ +R ++ G + S+S D+ VW+ ++G + L+ H+ VK ++ +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAHQETVKDFRLLQDSR 1064
Query: 148 FLATCSRDKSVWVWEV--GE-EDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
L+ S D +V VW V G E ++ C H V +S S D T K
Sbjct: 1065 LLSW-SFDGTVKVWNVITGRIERDFTC------HQGTVLSCAISSDATKFSSTSADKTAK 1117
Query: 205 LFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
++ D LK H V AF G LAT D+ ++IW
Sbjct: 1118 IWSFDLLSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 53/199 (26%)
Query: 167 DEYECAAVINAHIQDVKKVRFH-----PFDNILASASYD-DTVKLFKEDKAEA------- 213
DE +CA N Q+ + H PF NI+ + +T +++++ K +A
Sbjct: 541 DEKDCAVCEN--FQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTG 598
Query: 214 ----DWINFATLKS--------HTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSA 261
+WIN T+K+ HT V+ F + G R+A+C D T++++K
Sbjct: 599 RLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 658
Query: 262 GIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDM 321
I +++ + C S D S+ IAT D ++I+ D
Sbjct: 659 DIKAHEDEVL---CCAFSS-------DDSY------IATCSADKKVKIW---------DS 693
Query: 322 VSFDLVHTEHRAHNQDVNC 340
+ LVHT + H++ VNC
Sbjct: 694 ATGKLVHT-YDEHSEQVNC 711
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 19/202 (9%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH+ V ++ + G + S ED I++W + Y L +L++D +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLL 1066
Query: 69 LW---GKESFGNKFTAKAILSD--GHQRTIRETAWSPCGNFIASASFDATTAVW--DKRS 121
W G N T + I D HQ T+ A S +S S D T +W D S
Sbjct: 1067 SWSFDGTVKVWNVITGR-IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1125
Query: 122 GQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINA---- 177
E L+GH V+ +S +G LAT + + +W V + A I+
Sbjct: 1126 PLHE----LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 178 --HIQDVKKVRFHPFDNILASA 197
H V V F P L SA
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVSA 1203
>pdb|2NYD|A Chain A, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
pdb|2NYD|B Chain B, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
Length = 370
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 355 LTLHDVVRRLEAMAPLSLAEPWDNVGLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGT 414
+ + D++ L+ P S AE WDNVGLLI + + ++ +D T EV+ EA+E G
Sbjct: 5 MKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDV--EVTGVLTALDCTLEVVNEAIEKGY 62
Query: 415 DLIIAYHPPIFAPLKRVTNDKWKERVVSTCLAHNIAVYSPHTTWDA 460
+ II++HP IF + + + + ++ + H+I + + HT D
Sbjct: 63 NTIISHHPLIFKGVTSLKANGYG-LIIRKLIQHDINLIAMHTNLDV 107
>pdb|3LNL|A Chain A, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
pdb|3LNL|B Chain B, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
Length = 370
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 355 LTLHDVVRRLEAMAPLSLAEPWDNVGLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGT 414
+ + D++ L+ P S AE WDNVGLLI + + ++ +D T EV+ EA+E G
Sbjct: 5 MKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDV--EVTGVLTALDCTLEVVNEAIEKGY 62
Query: 415 DLIIAYHPPIFAPLKRVTNDKWKERVVSTCLAHNIAVYSPHTTWDA 460
+ II++HP IF + + + + ++ + H+I + + HT D
Sbjct: 63 NTIISHHPLIFKGVTSLKANGYG-LIIRKLIQHDINLIAMHTNLDV 107
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 28/230 (12%)
Query: 39 VMVIREPYEKLHG--LPVETS------LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQ 90
V+V+R E +G + TS L DK + W KF GH
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 91 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 150
+++ + G + SAS+D T +WD +G E GH+++V SV K +
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 151 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVK 204
+ SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 124 SGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 205 L--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 180 AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 119 ASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 173 GNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 229
Query: 169 YECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 209
A+ QD V + F P LA+A+ +K+F D
Sbjct: 230 ----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 49/163 (30%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH + ++ +P GT+I+S G+D I LW + +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------- 228
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA--------SFDATTAVWDKR 120
KA+ + Q + A+SP ++A+A S D V D R
Sbjct: 229 -------------KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
E + E S+ WS +GQ L D + VW+V
Sbjct: 276 P---EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 28/230 (12%)
Query: 39 VMVIREPYEKLHG--LPVETS------LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQ 90
V+V+R E +G + TS L DK + W KF GH
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 91 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 150
+++ + G + SAS+D T +WD +G E GH+++V SV K +
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 151 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVK 204
+ SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 124 SGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 205 L--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 180 AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 119 ASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 173 GNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 229
Query: 169 YECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 209
A+ QD V + F P LA+A+ +K+F D
Sbjct: 230 ----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 49/163 (30%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH + ++ +P GT+I+S G+D I LW + +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------- 228
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA--------SFDATTAVWDKR 120
KA+ + Q + A+SP ++A+A S D V D R
Sbjct: 229 -------------KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
E + E S+ WS +GQ L D + VW+V
Sbjct: 276 P---EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 28/230 (12%)
Query: 39 VMVIREPYEKLHG--LPVETS------LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQ 90
V+V+R E +G + TS L DK + W KF GH
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 91 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 150
+++ + G + SAS+D T +WD +G E GH+++V SV K +
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 151 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVK 204
+ SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 124 SGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 205 L--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 180 AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 119 ASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 173 GNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 229
Query: 169 YECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 209
A+ QD V + F P LA+A+ +K+F D
Sbjct: 230 ----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 49/163 (30%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH + ++ +P GT+I+S G+D I LW + +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------- 228
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA--------SFDATTAVWDKR 120
KA+ + Q + A+SP ++A+A S D V D R
Sbjct: 229 -------------KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
+A E H S+ WS +GQ L D + VW+V
Sbjct: 276 PEFAGYSAAAEPH---AVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 28/230 (12%)
Query: 39 VMVIREPYEKLHG--LPVETS------LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQ 90
V+V+R E +G + TS L DK + W KF GH
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 91 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 150
+++ + G + SAS+D T +WD +G E GH+++V SV K +
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 151 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVK 204
+ SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 124 SGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 205 L--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 180 AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 119 ASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 173 GNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 229
Query: 169 YECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 209
A+ QD V + F P LA+A+ +K+F D
Sbjct: 230 ----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 63 EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG 122
DK + W KF GH +++ + G + SAS+D T +WD +G
Sbjct: 32 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 91
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 182
E GH+++V SV K + + SRDK++ VW + + +C A + H V
Sbjct: 92 --ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWV 145
Query: 183 KKVRFHPFDN------ILASASYDDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFD 234
+VR P + + SA D VK + + EAD+I H S + +L
Sbjct: 146 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG------HNSNINTLTAS 199
Query: 235 RIGSRLATCSDDATVKIW 252
G+ +A+ D + +W
Sbjct: 200 PDGTLIASAGKDGEIMLW 217
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 113 ASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 166
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 167 GNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 223
Query: 169 YECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 209
A+ QD V + F P LA+A+ +K+F D
Sbjct: 224 ----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 260
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 49/163 (30%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH + ++ +P GT+I+S G+D I LW + +
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------- 222
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA--------SFDATTAVWDKR 120
KA+ + Q + A+SP ++A+A S D V D R
Sbjct: 223 -------------KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 269
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
E + E S+ WS +GQ L D + VW+V
Sbjct: 270 P---EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 111/281 (39%), Gaps = 44/281 (15%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW---------------VMVIREP 45
M +TLKGH +V + W I S +D + +W V+
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 46 YE------KLHGLPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS 99
Y GL + S+ L DKN E+ K + A+ H + +++
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKN------ENMAAKKKSVAM----HTNYLSACSFT 163
Query: 100 PCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW--SKNGQFLATCSRDKS 157
I +AS D T A+WD SGQ + GH +V + S+ G + DK
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLL--QSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 158 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF--KEDKAEADW 215
VW++ +C H DV VR++P + AS S D T +L+ + D+ A +
Sbjct: 222 AMVWDM---RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 216 INFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 256
+ + +S +SL+ G L +D T+ +W K
Sbjct: 279 SKESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLK 315
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 37/157 (23%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
Q + H+ V +V + P G +S +D RL+ L D
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLY---------------------DLRAD 272
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
+ + ++ KES F A ++ +S G + + D T VWD G
Sbjct: 273 REVAIYSKESI--IFGASSV------------DFSLSGRLLFAGYNDYTINVWDVLKGSR 318
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 161
+ L GHEN V ++ S +G + S D ++ VW
Sbjct: 319 V--SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 122 GQF--ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
GQF + TL+GH N+V + W K+ + + + S+D V VW+ ++ +
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPC 106
Query: 180 QDVKKVRFHPFDNILASASYDDTVKLF--KEDKAEADWINFATLKSHTSTVWSLAFDRIG 237
V + P +A D+ ++ DK E ++ HT+ + + +F
Sbjct: 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD 166
Query: 238 SRLATCSDDATVKIW 252
++ T S D T +W
Sbjct: 167 MQILTASGDGTCALW 181
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 28/230 (12%)
Query: 39 VMVIREPYEKLHG--LPVETS------LRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQ 90
V+V+R E +G + TS L DK + W KF GH
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 91 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 150
+++ + G + SAS+D T +WD +G E GH+++V SV K +
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 151 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVK 204
+ SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 124 SGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 205 L--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 180 AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 29/221 (13%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETS 57
++ KGH V + + G S DK +RLW + E Y++ G + ++
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 58 LRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF------IASA 108
++ DK I++W + + A + GH + + P I SA
Sbjct: 119 ASXIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
D W+ QF+ A GH + + ++T S +G +A+ +D + +W + +
Sbjct: 173 GNDKXVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK-- 228
Query: 169 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKED 209
+ ++A +V + F P LA+A+ +K+F D
Sbjct: 229 -KAXYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 49/163 (30%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH + ++ +P GT+I+S G+D I LW + +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK------------------------- 228
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA--------SFDATTAVWDKR 120
KA + Q + A+SP ++A+A S D V D R
Sbjct: 229 -------------KAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275
Query: 121 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
E + E S+ WS +GQ L D + VW+V
Sbjct: 276 P---EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 119/294 (40%), Gaps = 42/294 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW-------VMVIREPYEKLHGLPVETSLR 59
+K H+ V +++ I++C DK +++W V E E+++ S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 60 QLV-----EDKNIRLWG---KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD 111
L+ D ++LW KE F GH ++ +SP +AS S D
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMF--------GHTNSVNHCRFSPDDKLLASCSAD 770
Query: 112 ATTAVWDKRSG---------QFECNAT--LEGHENEVKSVTWSKNGQFLATCSRDKSVWV 160
T +WD S QF N E E VK +WS +G + +++K +++
Sbjct: 771 GTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFL 829
Query: 161 WEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFAT 220
+++ + H ++ F P +++ A V+L+ D A
Sbjct: 830 FDIHTSGLL--GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS----KVAD 883
Query: 221 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK 273
+ H S V + F GS T SDD T+++W+ K NSA + + D V++
Sbjct: 884 CRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQ 937
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDK 65
++ H V++ ++ G I+SCG DK ++++ ET +L+E K
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVF--------------KAETG-EKLLEIK 660
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFE 125
H+ + A+S FIA+ S D +W+ +G E
Sbjct: 661 ----------------------AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG--E 696
Query: 126 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
T + H +V ++ + LAT S D + +W++ ++ EC + H V
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK---ECRNTMFGHTNSVN 753
Query: 184 KVRFHPFDNILASASYDDTVKL 205
RF P D +LAS S D T+KL
Sbjct: 754 HCRFSPDDKLLASCSADGTLKL 775
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/421 (20%), Positives = 154/421 (36%), Gaps = 104/421 (24%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW----------------VMVIREPYEKL 49
T+ GH V + ++P +++SC D ++LW + + +P E +
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 50 HGLPVETS-----LRQLVEDKN-IRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGN 103
+ S R +V KN I L+ + G + GH TI+ +SP +
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSG----LLGEIHTGHHSTIQYCDFSPQNH 859
Query: 104 FIASASFDATTAVW--DKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 161
A +W D RS +C GH + V V +S +G T S D+++ +W
Sbjct: 860 LAVVALSQYCVELWNTDSRSKVADC----RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Query: 162 E------------------VGEEDEYECAAVINAHIQDVKKVR----------------- 186
E V +E+E AV HI+ ++ +
Sbjct: 916 ETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLINGRTGQIDYLTEAQVSCC 973
Query: 187 -FHPFDNILASASYDDTVKLFKEDKAEADWIN---FATLKSHTSTVWSLAFDRIGSRLAT 242
P +A + +++ + +N F + H TVW + F L +
Sbjct: 974 CLSPHLQYIAFGDENGAIEIL-------ELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 1026
Query: 243 CSDDATVKIW-----------------KEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRT 285
SDDA +++W K+++ ++ + + D K ++G+ +
Sbjct: 1027 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD 1086
Query: 286 IYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAW 343
CH +++ DA + F + + SFDL+ H R HN V C A+
Sbjct: 1087 FV----CHQGTVLSCDISHDATK-FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAF 1141
Query: 344 N 344
+
Sbjct: 1142 S 1142
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 116/293 (39%), Gaps = 65/293 (22%)
Query: 8 KGHQGRVWNVSWNPQGTMISSCGEDKNIRLW----------VMVIRE-----PYEKLHGL 52
+GH V V ++P G+ + +D+ IRLW VM+ +E ++ L
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVL 944
Query: 53 PVETSLR-QLVEDKNIRL----------------WGKESFGNKFTAKAILS--------- 86
V+ R QL+ + ++ +FG++ A IL
Sbjct: 945 AVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQS 1004
Query: 87 -DGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN 145
H++T+ ++ + S+S DA VW+ Q + L GH+ VK KN
Sbjct: 1005 RFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---WQLDKCIFLRGHQETVKDFRLLKN 1061
Query: 146 GQFLATCSRDKSVWVWEV---GEEDEYEC--AAVINAHI-QDVKKVRFHPFDNILASASY 199
+ L+ S D +V VW + +E ++ C V++ I D K +S S
Sbjct: 1062 SRLLSW-SFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATK---------FSSTSA 1111
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
D T K++ D + L+ H V AF + LAT D+ ++IW
Sbjct: 1112 DKTAKIWSFDLL----LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 53/199 (26%)
Query: 167 DEYECAAVINAHIQDVKKVRFH-----PFDNILASASYD-DTVKLFKEDKAEA------- 213
DE +CA ++ + Q+ + H PF NI+ + +T +++++ K +A
Sbjct: 540 DEKDCA--VSENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNG 597
Query: 214 ----DWINFATL--------KSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSA 261
+WIN + + HT V+ F G R+A+C D T++++K + G
Sbjct: 598 MLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKA-ETGEKL 656
Query: 262 GIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDM 321
D V C + IAT D ++I+ N G
Sbjct: 657 LEIKAHEDEVLCCAFSTDDR---------------FIATCSVDKKVKIW--NSMTG---- 695
Query: 322 VSFDLVHTEHRAHNQDVNC 340
+LVHT + H++ VNC
Sbjct: 696 ---ELVHT-YDEHSEQVNC 710
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 10 HQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG---------LPVETSLRQ 60
HQG V + + T SS DK ++W + P +L G V+++L
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLA 1149
Query: 61 LVEDKN-IRLWGKESFGNKFTAKAILSDGHQRT----IRETAWSPCGNFIASA 108
+D IR+W S G A LS+ T + + +SP G + SA
Sbjct: 1150 TGDDNGEIRIWNV-SNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 21/170 (12%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW------VMVIREPYEKLHGLPVETSL 58
Q+ H+ VW++ + + S +D I++W + +R E + + +
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNS 1062
Query: 59 RQL--VEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 116
R L D +++W + GNK K + HQ T+ S +S S D T +
Sbjct: 1063 RLLSWSFDGTVKVWNIIT-GNK--EKDFVC--HQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 117 WDKRSGQFECNA---TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
W F+ L GH V+ +S + LAT + + +W V
Sbjct: 1118 W-----SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 7 LKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLW-VMVIREPYEKLHGLPVETSLRQLVED 64
L+GHQ + +SWNP + S +D I LW + + + + + T +VED
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 65 KNIRLWGKESFG---------------NKFTAKAILSDGHQRTIRETAWSPCGNFI-ASA 108
L + FG N + + D H + +++P FI A+
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE---VG 164
S D T A+WD R+ + + + + E H++E+ V WS N LA+ D+ + VW+ +G
Sbjct: 297 SADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 165 EEDEYECA 172
EE E A
Sbjct: 356 EEQSTEDA 363
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 88 GHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENEVKSVT 141
GHQ+ +W+P N ++ SAS D T +WD K + GH V+ V
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + + ++AH +V + F+P+ ILA+ S
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWKEYKPG 258
D TV L+ + +F + K V WS + I LA+ D + +W K G
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWDLSKIG 355
Query: 259 NSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
T D + + + G H I D SW
Sbjct: 356 EEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 386
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 121 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 175
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 236 IGSR-LATCSDDATVKIW 252
LAT S D TV +W
Sbjct: 288 YSEFILATGSADKTVALW 305
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 221 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 279
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 228
Query: 280 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 336
GH + D++W L + + + DD + + N + S V AH
Sbjct: 229 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 278
Query: 337 DVNCVAWNP 345
+VNC+++NP
Sbjct: 279 EVNCLSFNP 287
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 7 LKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLW-VMVIREPYEKLHGLPVETSLRQLVED 64
L+GHQ + +SWNP + S +D I LW + + + + + T +VED
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 65 KNIRLWGKESFG---------------NKFTAKAILSDGHQRTIRETAWSPCGNFI-ASA 108
L + FG N + + D H + +++P FI A+
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE---VG 164
S D T A+WD R+ + + + + E H++E+ V WS N LA+ D+ + VW+ +G
Sbjct: 299 SADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 165 EEDEYECA 172
EE E A
Sbjct: 358 EEQSTEDA 365
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 88 GHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENEVKSVT 141
GHQ+ +W+P N ++ SAS D T +WD K + GH V+ V
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + + ++AH +V + F+P+ ILA+ S
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWKEYKPG 258
D TV L+ + +F + K V WS + I LA+ D + +W K G
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWDLSKIG 357
Query: 259 NSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
T D + + + G H I D SW
Sbjct: 358 EEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 388
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 121 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 175
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 236 IGSR-LATCSDDATVKIW 252
LAT S D TV +W
Sbjct: 290 YSEFILATGSADKTVALW 307
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 221 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 279
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 230
Query: 280 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 336
GH + D++W L + + + DD + + N + S V AH
Sbjct: 231 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 280
Query: 337 DVNCVAWNP 345
+VNC+++NP
Sbjct: 281 EVNCLSFNP 289
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 7 LKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLW-VMVIREPYEKLHGLPVETSLRQLVED 64
L+GHQ + +SWNP + S +D I LW + + + + + T +VED
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 65 KNIRLWGKESFG---------------NKFTAKAILSDGHQRTIRETAWSPCGNFI-ASA 108
L + FG N + + D H + +++P FI A+
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 109 SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE---VG 164
S D T A+WD R+ + + + + E H++E+ V WS N LA+ D+ + VW+ +G
Sbjct: 301 SADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 165 EEDEYECA 172
EE E A
Sbjct: 360 EEQSTEDA 367
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 88 GHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENEVKSVT 141
GHQ+ +W+P N ++ SAS D T +WD K + GH V+ V
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + + ++AH +V + F+P+ ILA+ S
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWKEYKPG 258
D TV L+ + +F + K V WS + I LA+ D + +W K G
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWDLSKIG 359
Query: 259 NSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
T D + + + G H I D SW
Sbjct: 360 EEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 390
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 121 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 175
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 236 IGSR-LATCSDDATVKIW 252
LAT S D TV +W
Sbjct: 292 YSEFILATGSADKTVALW 309
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 221 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 279
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 232
Query: 280 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 336
GH + D++W L + + + DD + + N + S V AH
Sbjct: 233 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 282
Query: 337 DVNCVAWNP 345
+VNC+++NP
Sbjct: 283 EVNCLSFNP 291
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 102/261 (39%), Gaps = 55/261 (21%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLR 59
M TLKGH G V ++ PQ MI S DK I +W + E +G+P + +LR
Sbjct: 5 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---YGIP-QRALR 60
Query: 60 QLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDK 119
GH + + S G F S S+D T +WD
Sbjct: 61 ----------------------------GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 120 RSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
+G GH +V SV +S + + + + SRDK++ +W +Y +H
Sbjct: 93 TTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHS 148
Query: 180 QDVKKVRFHPFDN--ILASASYDDTVKLFKEDKAEADWINFATLK------SHTSTVWSL 231
+ V VRF P + I+ S +D VK++ N A K HT + ++
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVW----------NLANCKLKTNHIGHTGYLNTV 198
Query: 232 AFDRIGSRLATCSDDATVKIW 252
GS A+ D +W
Sbjct: 199 TVSPDGSLCASGGKDGQAMLW 219
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 2 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPV 54
I + L+GH V +V + G S D +RLW + + G +
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 55 ETSLRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGN--FIASAS 109
+ RQ+V DK I+LW K+T + + H + +SP + I S
Sbjct: 114 SSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQ---DESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 110 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
+D VW+ + + + N GH + +VT S +G A+ +D +W++ E
Sbjct: 170 WDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 7 LKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLW-VMVIREPYEKLHGLPVETSLRQLVE 63
L+GHQ + +SWNP G ++S+ +D I LW + + + + + + T +VE
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSAS-DDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 64 DKNIRLWGKESFG---------------NKFTAKAILSDGHQRTIRETAWSPCGNFI-AS 107
D + L + FG N + + D H + +++P FI A+
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 108 ASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE---V 163
S D T A+WD R+ + + + + E H++E+ V WS N LA+ D+ + VW+ +
Sbjct: 292 GSADKTVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 164 GEEDEYECA 172
GEE E A
Sbjct: 351 GEEQSPEDA 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 88 GHQRTIRETAWSP-CGNFIASASFDATTAVWD-----KRSGQFECNATLEGHENEVKSVT 141
GHQ+ +W+P + SAS D T +WD K + GH V+ V+
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + + ++AH +V + F+P+ ILA+ S
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWKEYKPG 258
D TV L+ + +F + K V WS + I LA+ D + +W K G
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLNVWDLSKIG 351
Query: 259 NSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
P D + + GH + I D SW
Sbjct: 352 EEQS-PEDAEDGPPELLFIHGGHTAK-ISDFSW 382
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 108/287 (37%), Gaps = 42/287 (14%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD------KRSGQFECNA--TLEGHEN 135
I +G R +PC IA+ + + V+D K ECN L GH+
Sbjct: 121 INHEGEVNRARYMPQNPC--IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQK 178
Query: 136 EVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVINAHIQDVKKVRFHPF 190
E ++W+ N L + S D ++ +W++ E + + H V+ V +H
Sbjct: 179 EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL 238
Query: 191 DNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LATCSDDATV 249
L + DD + + ++ ++ +HT+ V L+F+ LAT S D TV
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 250 KIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC-HLTDLIATACGDDAIR 308
+W K H I+ + W H ++A++ D +
Sbjct: 299 ALWDLRN---------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 309 IF-------KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 348
++ +++PE + +H H A D +WNP P
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD---FSWNPNEP 387
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 37/274 (13%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDATTAVWDKRS 121
DK I+++ E +K GH+ + W+ G +AS S+D +W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 122 GQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
G++ A H V SV W+ + G L S D V V E +E+ +I+AH
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTTSPIIIDAHA 145
Query: 180 QDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 226
V + P + D+ VK++K + ++ +TL+ H+
Sbjct: 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205
Query: 227 TVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWKCVCTLSGHH 282
V +A+ + S LA+ S D T IW T DN+ WK
Sbjct: 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKF 253
Query: 283 GRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
++ SW +++A + GD+ + ++KEN E
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 35/238 (14%)
Query: 6 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWV------------MVIREPYEKLHG 51
TL GH+G VW V W +P+ GT+++SC D + +W V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 52 LPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC---------- 101
P E LV + ++ E F T I+ D H + +W+P
Sbjct: 108 APHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 102 ---GNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSKN---GQFLATCS 153
+ D +W S + +TLEGH + V+ V WS +LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 154 RDKSVWVW-EVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKLFKED 209
+D++ +W + E+ ++ + DV + + N+LA + D+ V L+KE+
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 143
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 144 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 199
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 63 HPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 200 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 248
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 249 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW---CHLTDLIATACGDD 305
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 182 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 306 AIRIFKENPEAG 317
I+ ++ E G
Sbjct: 230 TCIIWTQDNEQG 241
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 24/125 (19%)
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
+H + D G RLATCS D T+KI++ + K + TL+GH
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHE 53
Query: 283 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 340
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 341 VAWNP 345
V W P
Sbjct: 105 VQWAP 109
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWDKR 120
D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W +
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237
Query: 121 SGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
+ Q TL E + + +WS +G LA D V +W+ E ++E A ++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 55/256 (21%)
Query: 6 TLKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
TLKGH G V ++ PQ MI S DK I +W + E +G+P + +LR
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---YGIP-QRALR----- 83
Query: 65 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF 124
GH + + S G F S S+D T +WD +G
Sbjct: 84 -----------------------GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-- 118
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKK 184
GH +V SV +S + + + + SRDK++ +W +Y +H + V
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSC 176
Query: 185 VRFHPFDN--ILASASYDDTVKLFKEDKAEADWINFATLK------SHTSTVWSLAFDRI 236
VRF P + I+ S +D VK++ N A K HT + ++
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVW----------NLANCKLKTNHIGHTGYLNTVTVSPD 226
Query: 237 GSRLATCSDDATVKIW 252
GS A+ D +W
Sbjct: 227 GSLCASGGKDGQAMLW 242
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 2 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPV 54
I + L+GH V +V + G S D +RLW + + G +
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 55 ETSLRQLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGN--FIASAS 109
+ RQ+V DK I+LW K+T + + H + +SP + I S
Sbjct: 137 SSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQ---DESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 110 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE 165
+D VW+ + + + N GH + +VT S +G A+ +D +W++ E
Sbjct: 193 WDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 37/274 (13%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDATTAVWDKRS 121
DK I+++ E +K GH+ + W+ G +AS S+D +W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86
Query: 122 GQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
G++ A H V SV W+ + G L S D V V E +E+ +I+AH
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF-KENGTTSPIIIDAHA 145
Query: 180 QDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 226
V + P + D+ VK++K + ++ +TL+ H+
Sbjct: 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205
Query: 227 TVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWKCVCTLSGHH 282
V +A+ + S +A+ S D T IW T DN+ WK
Sbjct: 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKF 253
Query: 283 GRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
++ SW +++A + GD+ + ++KEN E
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 35/238 (14%)
Query: 6 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWV------------MVIREPYEKLHG 51
TL GH+G VW V W +P+ GT+++SC D + +W V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 52 LPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC---------- 101
P E LV + ++ E F T I+ D H + +W+P
Sbjct: 108 APHEYGPMLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 102 ---GNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSKN---GQFLATCS 153
+ D +W S + +TLEGH + V+ V WS ++A+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 154 RDKSVWVW-EVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKLFKED 209
+D++ +W + E+ ++ + DV + + N+LA + D+ V L+KE+
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 143
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 144 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 199
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 63 HPKFGTILASCSYDGKVMIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 200 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 248
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 249 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW---CHLTDLIATACGDD 305
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 182 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 306 AIRIFKENPEAG 317
I+ ++ E G
Sbjct: 230 TCIIWTQDNEQG 241
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 24/125 (19%)
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
+H + D G R+ATCS D T+KI++ + K + TL+GH
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------KLIDTLTGHE 53
Query: 283 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 340
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVMIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 341 VAWNP 345
V W P
Sbjct: 105 VQWAP 109
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWDKR 120
D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W +
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237
Query: 121 SGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
+ Q TL E + + +WS +G LA D V +W+ E ++E A ++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 189
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 190 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 241
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 242 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 292
+D ++++ +P + + + S K + +H ++ + +SWC
Sbjct: 129 CLGNDGILRLYDALEPSD---LRSWTLTSEMKVLSIPPANHLQSDFCLSWC 176
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 233
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 234 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 289
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 68 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 116
Query: 290 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 341
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEMKVLSIPPANHLQSDFCL 173
Query: 342 AWNPVVPEPQK 352
+W P P+K
Sbjct: 174 SWCPSRFSPEK 184
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 10 HQGRVWNVSWNPQGTMISSCGEDKNIRLW 38
H G VW+VSWN GT++SS G+D +RLW
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 106/262 (40%), Gaps = 46/262 (17%)
Query: 6 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE 63
TL +G +++V + P G ++ G D +RL+ +E
Sbjct: 105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY---------------------DALE 143
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG---NFIASASFDATTAVWDKR 120
++R W + ++ +I H ++ +W P +A ++ + +
Sbjct: 144 PSDLRSW---TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200
Query: 121 SGQFECNATLEGHENEVKSVTWSKN----GQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
G+ A L GH++ ++S++W+ + Q +AT +D + ++++ E+ ++
Sbjct: 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--------LS 252
Query: 177 AHIQDVKKVRFHPFDN-----ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 231
+ + FDN + A D + E ++ + H VWS+
Sbjct: 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV 312
Query: 232 AFDRIGSRLATCSDDATVKIWK 253
+++ G+ L++ DD V++WK
Sbjct: 313 SWNLTGTILSSAGDDGKVRLWK 334
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
Q E + + H EV SV+W+ G L++ D V +W+ +E++C +VI A
Sbjct: 295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 41/125 (32%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH V +V ++ G +++C D++I+++ + DK+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----------------------DKDTS 45
Query: 69 LWGKESFGNKFTAKAILSD---GHQRTIRETAW-SP-CGNFIASASFDATTAVWDKRSGQ 123
W LSD H +I W SP G IASAS+D T +W++ Q
Sbjct: 46 NWE-------------LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92
Query: 124 FECNA 128
EC+
Sbjct: 93 EECSG 97
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 62 VEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRS 121
+ D I++W K N K IL+ GH ++ + I + S D+T VWD +
Sbjct: 150 LRDNTIKIWDK----NTLECKRILT-GHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNT 202
Query: 122 GQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD 181
G E TL H V + + N + TCS+D+S+ VW++ + V+ H
Sbjct: 203 G--EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 182 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF-DRIGSRL 240
V V F D + SAS D T+K++ E TL H + L + DR+ +
Sbjct: 259 VNVVDFD--DKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYRDRL---V 309
Query: 241 ATCSDDATVKIW 252
+ S D T+++W
Sbjct: 310 VSGSSDNTIRLW 321
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 23/159 (14%)
Query: 147 QFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF 206
Q + + RD ++ +W+ ++ EC ++ H V +++ + ++ + S D TV+++
Sbjct: 144 QKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVW 198
Query: 207 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKP--------- 257
+ E TL H V L F+ + TCS D ++ +W P
Sbjct: 199 DVNTGEM----LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 258 -GNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 295
G+ A + D D K + + SG +++ S C
Sbjct: 253 VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFV 289
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 189
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 190 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 241
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 126
Query: 242 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 292
+D ++++ +P + + + S K + +H ++ + +SWC
Sbjct: 127 CLGNDGILRLYDALEPSD---LRSWTLTSEMKVLSIPPANHLQSDFCLSWC 174
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 233
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 234 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 289
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 66 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 114
Query: 290 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 341
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 115 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEMKVLSIPPANHLQSDFCL 171
Query: 342 AWNPVVPEPQK 352
+W P P+K
Sbjct: 172 SWCPSRFSPEK 182
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 10 HQGRVWNVSWNPQGTMISSCGEDKNIRLW 38
H G VW+VSWN GT++SS G+D +RLW
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 106/262 (40%), Gaps = 46/262 (17%)
Query: 6 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE 63
TL +G +++V + P G ++ G D +RL+ +E
Sbjct: 103 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY---------------------DALE 141
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG---NFIASASFDATTAVWDKR 120
++R W + ++ +I H ++ +W P +A ++ + +
Sbjct: 142 PSDLRSW---TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 198
Query: 121 SGQFECNATLEGHENEVKSVTWSKN----GQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
G+ A L GH++ ++S++W+ + Q +AT +D + ++++ E+ ++
Sbjct: 199 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--------LS 250
Query: 177 AHIQDVKKVRFHPFDN-----ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 231
+ + FDN + A D + E ++ + H VWS+
Sbjct: 251 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV 310
Query: 232 AFDRIGSRLATCSDDATVKIWK 253
+++ G+ L++ DD V++WK
Sbjct: 311 SWNLTGTILSSAGDDGKVRLWK 332
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
Q E + + H EV SV+W+ G L++ D V +W+ +E++C +VI A
Sbjct: 293 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 348
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 41/125 (32%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH V +V ++ G +++C D++I+++ + DK+
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----------------------DKDTS 43
Query: 69 LWGKESFGNKFTAKAILSD---GHQRTIRETAW-SP-CGNFIASASFDATTAVWDKRSGQ 123
W LSD H +I W SP G IASAS+D T +W++ Q
Sbjct: 44 NWE-------------LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 90
Query: 124 FECNA 128
EC+
Sbjct: 91 EECSG 95
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 37/274 (13%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDATTAVWDKRS 121
DK I+++ E +K GH+ + W+ G +AS S+D +W + +
Sbjct: 32 DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88
Query: 122 GQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
G++ A H V SV W+ + G L S D V V E +E+ +I+AH
Sbjct: 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTTSPIIIDAHA 147
Query: 180 QDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 226
V + P + D+ VK++K + ++ +TL+ H+
Sbjct: 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207
Query: 227 TVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWKCVCTLSGHH 282
V +A+ + S LA+ S D T IW T DN+ WK
Sbjct: 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKF 255
Query: 283 GRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
++ SW +++A + GD+ + ++KEN E
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 6 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWV------------MVIREPYEKLHG 51
TL GH+G VW V W +P+ GT+++SC D + +W V +
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109
Query: 52 LPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC---------- 101
P E LV + ++ E F T I+ D H + +W+P
Sbjct: 110 APHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 102 ---GNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSKN---GQFLATCS 153
+ D +W S + +TLEGH + V+ V WS +LA+ S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 154 RDKSVWVW-EVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKLFKEDKA 211
+D++ +W + E+ ++ + DV + + N+LA + D+ V L+KE+
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN-L 287
Query: 212 EADW 215
E W
Sbjct: 288 EGKW 291
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 143
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 144 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 199
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 65 HPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 200 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 248
D V + FKE+ + I A S W+ A + + T D
Sbjct: 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 249 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW---CHLTDLIATACGDD 305
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 184 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 306 AIRIFKENPEAG 317
I+ ++ E G
Sbjct: 232 TCIIWTQDNEQG 243
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 24/125 (19%)
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
+H + D G RLATCS D T+KI++ + K + TL+GH
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHE 55
Query: 283 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 340
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 56 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 106
Query: 341 VAWNP 345
V W P
Sbjct: 107 VQWAP 111
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWDKR 120
D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W +
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239
Query: 121 SGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
+ Q TL E + + +WS +G LA D V +W+ E ++E A ++
Sbjct: 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 298
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 189
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 190 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 241
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 242 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 292
+D ++++ +P + + + S K + +H ++ + +SWC
Sbjct: 129 CLGNDGILRLYDALEPSD---LRSWTLTSEXKVLSIPPANHLQSDFCLSWC 176
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 233
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 234 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 289
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 68 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 116
Query: 290 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 341
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEXKVLSIPPANHLQSDFCL 173
Query: 342 AWNPVVPEPQK 352
+W P P+K
Sbjct: 174 SWCPSRFSPEK 184
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 10 HQGRVWNVSWNPQGTMISSCGEDKNIRLW 38
H G VW+VSWN GT++SS G+D +RLW
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 52/265 (19%)
Query: 6 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVE 63
TL +G +++V + P G ++ G D +RL+ +E
Sbjct: 105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY---------------------DALE 143
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG---NFIASASFDATTAVWDKR 120
++R W + ++ +I H ++ +W P +A ++ + +
Sbjct: 144 PSDLRSW---TLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200
Query: 121 SGQFECNATLEGHENEVKSVTWSKN----GQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
G+ A L GH++ ++S++W+ + Q +AT +D + ++++ E+ ++
Sbjct: 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--------LS 252
Query: 177 AHIQDVKKVRFHPFDNILASASYDDTVKLFK----EDKAEADWINFATLKS----HTSTV 228
+ + FDN SA D + E+KAE L S H V
Sbjct: 253 PLASEESLTNSNXFDN---SADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309
Query: 229 WSLAFDRIGSRLATCSDDATVKIWK 253
WS++++ G+ L++ DD V++WK
Sbjct: 310 WSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 123 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
Q E + + H EV SV+W+ G L++ D V +W+ +E++C +VI A
Sbjct: 295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVITAQ 350
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 41/125 (32%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GH V +V ++ G +++C D++I+++ + DK+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----------------------DKDTS 45
Query: 69 LWGKESFGNKFTAKAILSD---GHQRTIRETAW-SP-CGNFIASASFDATTAVWDKRSGQ 123
W LSD H +I W SP G IASAS+D T +W++ Q
Sbjct: 46 NWE-------------LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92
Query: 124 FECNA 128
EC+
Sbjct: 93 EECSG 97
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 49/261 (18%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQ 60
++ +TL+GH G+V+++ W P+ I S +D + +W + +K H + +
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKL------ 106
Query: 61 LVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD-- 118
H + E A++P G +A D+ ++++
Sbjct: 107 ----------------------------HCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
Query: 119 ---KRSGQFECNATLEGHENEVKSVTWSKNGQF-LATCSRDKSVWVWEV--GEEDEYECA 172
R G + L GH+ S + + + L T S D++ +W+V G+ +
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 173 AVINAHIQDVKKVRFHPFD-NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 231
+ H DV + + + N+ S S D TV+L+ T H + S+
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSV 255
Query: 232 AFDRIGSRLATCSDDATVKIW 252
F G R T SDD T +++
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLF 276
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 111/288 (38%), Gaps = 46/288 (15%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH + W+P N+I SAS D VW+ + Q ++ H V ++ NGQ
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--THAIKLHCPWVMECAFAPNGQ 121
Query: 148 FLATCSRDKSVWVWEVGEEDEYE----CAAVINAHIQDVKKVRFHP-FDNILASASYDDT 202
+A D + ++ + + + + + V+ H ++ P + L + S D T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 203 VKLFKEDKAEADWINFATLKS-HTSTVWSLAFDRIGSRL-ATCSDDATVKIWKEYKPGNS 260
L+ + I + S HT+ V SL+ + + + + + S D TV++W
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW-------- 233
Query: 261 AGIPTPDNDSVWKCVCTLSGHHG--------------RTIYDISWCHLTDLIATACGDDA 306
D + V T GH G T D C L D+
Sbjct: 234 ------DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT----GHQ 283
Query: 307 IRIFKENPEAGDSDM-----VSFDLVHTEHRAHNQDVNCVAWNPVVPE 349
++++ P+ D+++ V+F + A + +C W+ ++ E
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 48/167 (28%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVI--------REPYEKLHGLPVET 56
+T GH+G + +V + P G + +D RL+ M REP + LP+ T
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302
Query: 57 SLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 116
S+ A+S G + + + V
Sbjct: 303 SV--------------------------------------AFSISGRLLFAGYSNGDCYV 324
Query: 117 WDKRSGQFECN-ATLE-GHENEVKSVTWSKNGQFLATCSRDKSVWVW 161
WD + N TL+ HE + + S +G L T S DK++ +W
Sbjct: 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 7 LKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWVMVIREPYEKL---------HGLPV-- 54
L+GHQ + +SWN + S +D + LW + K+ H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 55 -------ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFI-A 106
E+ + +D+ + +W S N + + L D H + +++P FI A
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRS--NTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE--- 162
+ S D T A+WD R+ + + + T E H++E+ V WS N LA+ D+ + VW+
Sbjct: 293 TGSADKTVALWDLRNLKLKLH-TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 163 VGEEDEYECA 172
+GEE E A
Sbjct: 352 IGEEQSAEDA 361
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 88 GHQRTIRETAW-SPCGNFIASASFDATTAVWDKRSGQFE-----CNATLEGHENEVKSVT 141
GHQ+ +W S + SAS D T +WD +G E A GH V+ V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + +++AH +V + F+P+ ILA+ S
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV----WSLAFDRIGSRLATCSDDATVKIWKEY 255
D TV L+ + + T +SH + WS + I LA+ D + +W
Sbjct: 297 DKTVALWDLRNLK---LKLHTFESHKDEIFQVHWSPHNETI---LASSGTDRRLNVWDLS 350
Query: 256 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
K G D + + + G H I D SW
Sbjct: 351 KIGEEQS--AEDAEDGPPELLFIHGGHTAKISDFSW 384
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 28/240 (11%)
Query: 121 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 175
SG+ + L GH+ E ++W+ N L + S D +V +W++ E + A+
Sbjct: 166 SGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V +H L + DD + + ++ + +HT+ V L+F+
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 236 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 294
LAT S D TV +W D ++ + T H I+ + W
Sbjct: 286 YSEFILATGSADKTVALW--------------DLRNLKLKLHTFESHKDE-IFQVHWSPH 330
Query: 295 TDLIATACGDDA------IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 348
+ I + G D + E A D++ +L+ H H ++ +WNP P
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEP 389
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 145 NGQFLAT-CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD-NILASASYDDT 202
+ QF A+ C DK + + EC IN H +V + R+ P + +I+A+ +
Sbjct: 92 DAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN-HEGEVNRARYMPQNPHIIATKTPSSD 150
Query: 203 VKLFKEDKAEA------DWINFATLKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEY 255
V +F K A + L+ H + L+++ + L + SDD TV +W
Sbjct: 151 VLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD-- 208
Query: 256 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIF---KE 312
+AG P + +GH + D++W L + + + DD + +
Sbjct: 209 ---INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESLFGSVADDQKLMIWDTRS 261
Query: 313 NPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNP 345
N + S +V AH +VNC+++NP
Sbjct: 262 NTTSKPSHLVD---------AHTAEVNCLSFNP 285
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 7 LKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWVMVIREPYEKL---------HGLPV-- 54
L+GHQ + +SWN + S +D + LW + K+ H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 55 -------ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFI-A 106
E+ + +D+ + +W S N + + L D H + +++P FI A
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRS--NTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWE--- 162
+ S D T A+WD R+ + + + T E H++E+ V WS N LA+ D+ + VW+
Sbjct: 293 TGSADKTVALWDLRNLKLKLH-TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 163 VGEEDEYECA 172
+GEE E A
Sbjct: 352 IGEEQSAEDA 361
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 88 GHQRTIRETAW-SPCGNFIASASFDATTAVWDKRSGQFE-----CNATLEGHENEVKSVT 141
GHQ+ +W S + SAS D T +WD +G E A GH V+ V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 142 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 199
W + + + D+ + +W+ + + +++AH +V + F+P+ ILA+ S
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTV----WSLAFDRIGSRLATCSDDATVKIWKEY 255
D TV L+ + + T +SH + WS + I LA+ D + +W
Sbjct: 297 DKTVALWDLRNLK---LKLHTFESHKDEIFQVHWSPHNETI---LASSGTDRRLNVWDLS 350
Query: 256 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 291
K G D + + + G H I D SW
Sbjct: 351 KIGEEQS--AEDAEDGPPELLFIHGGHTAKISDFSW 384
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 28/240 (11%)
Query: 121 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 175
SG+ + L GH+ E ++W+ N L + S D +V +W++ E + A+
Sbjct: 166 SGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 176 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 235
H V+ V +H L + DD + ++ + +HT+ V L+F+
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 236 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 294
LAT S D TV +W D ++ + T H I+ + W
Sbjct: 286 YSEFILATGSADKTVALW--------------DLRNLKLKLHTFESHKDE-IFQVHWSPH 330
Query: 295 TDLIATACGDDA------IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 348
+ I + G D + E A D++ +L+ H H ++ +WNP P
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEP 389
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 31/213 (14%)
Query: 145 NGQFLAT-CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD-NILASASYDDT 202
+ QF A+ C DK + + EC IN H +V + R+ P + +I+A+ +
Sbjct: 92 DAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN-HEGEVNRARYXPQNPHIIATKTPSSD 150
Query: 203 VKLFKEDKAEA------DWINFATLKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEY 255
V +F K A + L+ H + L+++ + L + SDD TV +W
Sbjct: 151 VLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD-- 208
Query: 256 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD-LIATACGDDAIRIF--KE 312
+AG P + +GH + D++W L + L + D + I+ +
Sbjct: 209 ---INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESLFGSVADDQKLXIWDTRS 261
Query: 313 NPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNP 345
N + S +V AH +VNC+++NP
Sbjct: 262 NTTSKPSHLVD---------AHTAEVNCLSFNP 285
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 98 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 157
WS GN +A A D + +W SG +E + SV W K G +LA +
Sbjct: 124 WS-SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 181
Query: 158 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 217
V +W+V ++ + +H V + ++ + IL+S S + AE +
Sbjct: 182 VQLWDVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---H 233
Query: 218 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 277
ATL H+ V L + G LA+ +D V +W P+ + W + T
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQT 282
Query: 278 LSGHHGRTIYDISWCH-LTDLIATACG--DDAIRIF 310
+ H G + ++WC ++++AT G D IRI+
Sbjct: 283 FTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 135 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 191
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 192 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 245
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 242
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 246 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 305
Query: 243 --CSDDATVKIW 252
+ D ++IW
Sbjct: 306 GGGTSDRHIRIW 317
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 87 DGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK 144
GH + + W+P G +AS D VW G+ + T H+ VK+V W
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 145 -NGQFLATC--SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYD 200
LAT + D+ + +W V C + ++AH Q V + + P + +++ +
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFA 353
Query: 201 DTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 256
+ + A A LK HTS V SL G+ +A+ + D T+++W+ ++
Sbjct: 354 QNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 27/181 (14%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYEKLHGL------ 52
TL GH V + W P G ++S G D + +W V + + + G
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 53 -PVETSLRQL---VEDKNIRLWGKESFGNKFTAKAILS--DGHQRTIRETAWSPCGNFIA 106
P ++++ D++IR+W + A LS D H + + WSP +
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ-VCSILWSPHYKELI 347
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE 166
S A + + A L+GH + V S+T S +G +A+ + D+++ +W E
Sbjct: 348 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 407
Query: 167 D 167
D
Sbjct: 408 D 408
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEK 48
M LKGH RV +++ +P G ++S D+ +RLW +P +
Sbjct: 365 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 412
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 5 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLW------VMVIREPYEKLHGLPVE 55
QT HQG V V+W P Q ++++ G D++IR+W + + + ++ +
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 340
Query: 56 TSLRQLVE-----DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASF 110
++L+ + +W + AK GH + SP G +ASA+
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVLSLTMSPDGATVASAAA 395
Query: 111 DATTAVW 117
D T +W
Sbjct: 396 DETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 98 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 157
WS GN +A A D + +W SG +E + SV W K G +LA +
Sbjct: 113 WS-SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 158 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 217
V +W+V ++ + +H V + ++ + IL+S S + AE +
Sbjct: 171 VQLWDVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---H 222
Query: 218 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 277
ATL H+ V L + G LA+ +D V +W P+ + W + T
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQT 271
Query: 278 LSGHHGRTIYDISWCH-LTDLIATACG--DDAIRIF 310
+ H G + ++WC ++++AT G D IRI+
Sbjct: 272 FTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 124 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 181 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 234
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 242
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294
Query: 243 --CSDDATVKIW 252
+ D ++IW
Sbjct: 295 GGGTSDRHIRIW 306
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 87 DGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK 144
GH + + W+P G +AS D VW G+ + T H+ VK+V W
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 145 -NGQFLATC--SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYD 200
LAT + D+ + +W V C + ++AH Q V + + P + +++ +
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFA 342
Query: 201 DTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 256
+ + A A LK HTS V SL G+ +A+ + D T+++W+ ++
Sbjct: 343 QNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 27/181 (14%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYEKLHGL------ 52
TL GH V + W P G ++S G D + +W V + + + G
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 53 -PVETSLRQL---VEDKNIRLWGKESFGNKFTAKAILS--DGHQRTIRETAWSPCGNFIA 106
P ++++ D++IR+W + A LS D H + + WSP +
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ-VCSILWSPHYKELI 336
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE 166
S A + + A L+GH + V S+T S +G +A+ + D+++ +W E
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396
Query: 167 D 167
D
Sbjct: 397 D 397
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEK 48
M LKGH RV +++ +P G ++S D+ +RLW +P +
Sbjct: 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 5 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLW------VMVIREPYEKLHGLPVE 55
QT HQG V V+W P Q ++++ G D++IR+W + + + ++ +
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329
Query: 56 TSLRQLVE-----DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASF 110
++L+ + +W + AK GH + SP G +ASA+
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVLSLTMSPDGATVASAAA 384
Query: 111 DATTAVW 117
D T +W
Sbjct: 385 DETLRLW 391
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 37/274 (13%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDATTAVWDKRS 121
DK I+++ E +K GH+ + W+ G +AS S+D +W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 122 GQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
G++ A H V SV W+ + G L S D V V E +E+ +I+AH
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTTSPIIIDAHA 145
Query: 180 QDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 226
V + P + D+ VK++K + ++ +TL+ H+
Sbjct: 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205
Query: 227 TVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWKCVCTLSGHH 282
V +A+ + S LA+ S D T IW T DN+ WK
Sbjct: 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKF 253
Query: 283 GRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
++ SW +++A + GD+ + ++KEN E
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 38/245 (15%)
Query: 6 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWV------------MVIREPYEKLHG 51
TL GH+G VW V W +P+ GT+++SC D + +W V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 52 LPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG--------- 102
P E LV + ++ E F T I+ D H + +W+P
Sbjct: 108 APHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 103 -----NFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSKN---GQFLATC 152
F+ + D +W S + +TLEGH + V+ V WS +LA+
Sbjct: 167 TKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 153 SRDKSVWVW-EVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKLFKEDK 210
S+D++ +W + E+ ++ + DV + + N+LA + D+ V L+KE+
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN- 284
Query: 211 AEADW 215
E W
Sbjct: 285 LEGKW 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 143
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 144 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 199
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 63 HPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 200 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 248
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 249 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW---CHLTDLIATACGDD 305
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 182 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 306 AIRIFKENPEAG 317
I+ ++ E G
Sbjct: 230 TCIIWTQDNEQG 241
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 223 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 282
+H + D G RLATCS D T+KI++ K + TL+GH
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-------------EGETHKLIDTLTGHE 53
Query: 283 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 340
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 341 VAWNP 345
V W P
Sbjct: 105 VQWAP 109
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWDKR 120
D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W +
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237
Query: 121 SGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
+ Q TL E + + +WS +G LA D V +W+ E ++E A ++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 102 GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 161
GN +A A D + +W SG +E + SV W K G +LA + V +W
Sbjct: 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 162 EVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATL 221
+V ++ + +H V + ++ + IL+S S + AE + ATL
Sbjct: 95 DVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---HVATL 146
Query: 222 KSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 281
H+ V L + G LA+ +D V +W P+ + W + T + H
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQTFTQH 195
Query: 282 HGRTIYDISWCH-LTDLIATACG--DDAIRIF 310
G + ++WC ++++AT G D IRI+
Sbjct: 196 QG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 123
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 44 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100
Query: 124 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 183
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 101 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 154
Query: 184 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 242
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214
Query: 243 --CSDDATVKIW 252
+ D ++IW
Sbjct: 215 GGGTSDRHIRIW 226
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK- 144
GH + + W+P G +AS D VW G+ + T H+ VK+V W
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 145 NGQFLATC--SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDD 201
LAT + D+ + +W V C + ++AH Q V + + P + +++ +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 202 TVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 256
+ + A A LK HTS V SL G+ +A+ + D T+++W+ ++
Sbjct: 264 NQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 27/181 (14%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYEKLHG------- 51
TL GH V + W P G ++S G D + +W V + + + G
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 52 LPVETSLRQL---VEDKNIRLWGKESFGNKFTAKAILS--DGHQRTIRETAWSPCGNFIA 106
P ++++ D++IR+W + A LS D H + + WSP +
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ-VCSILWSPHYKELI 256
Query: 107 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE 166
S A + + A L+GH + V S+T S +G +A+ + D+++ +W E
Sbjct: 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
Query: 167 D 167
D
Sbjct: 317 D 317
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 1 MINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 38
M LKGH RV +++ +P G ++S D+ +RLW
Sbjct: 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 5 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLW------VMVIREPYEKLHGLPVE 55
QT HQG V V+W P Q ++++ G D++IR+W + + + ++ +
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 249
Query: 56 TSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTA 115
++L+ + AK GH + SP G +ASA+ D T
Sbjct: 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Query: 116 VW 117
+W
Sbjct: 310 LW 311
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 110/274 (40%), Gaps = 37/274 (13%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDATTAVWDKRS 121
DK I+++ E +K GH+ + W+ G +AS S+D +W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEEN 86
Query: 122 GQFECNATLEGHENEVKSVTWS--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 179
G++ A H V SV W+ + G L S D V V E +E+ +I+AH
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEF-KENGTTSPIIIDAHA 145
Query: 180 QDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 226
V + P + D+ VK++K + ++ +TL+ H+
Sbjct: 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205
Query: 227 TVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWKCVCTLSGHH 282
V +A+ + S A+ S D T IW T DN+ WK
Sbjct: 206 WVRDVAWSPTVLLRSYXASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKF 253
Query: 283 GRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 316
++ SW +++A + GD+ + ++KEN E
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 35/238 (14%)
Query: 6 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWV------------MVIREPYEKLHG 51
TL GH+G VW V W +P+ GT+++SC D + +W V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 52 LPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC---------- 101
P E LV + ++ E F T I+ D H + +W+P
Sbjct: 108 APHEYGPXLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 102 ---GNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSKN---GQFLATCS 153
+ D +W S + +TLEGH + V+ V WS + A+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 154 RDKSVWVW-EVGEEDEYECAAVINAHIQDVK-KVRFHPFDNILASASYDDTVKLFKED 209
+D++ +W + E+ ++ + DV + + N+LA + D+ V L+KE+
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 84 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 143
++++ H I + G A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 144 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 199
K G LA+CS D V +W+ E + AV H V V++ H + L AS
Sbjct: 63 HPKFGTILASCSYDGKVXIWKE-ENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASS 121
Query: 200 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 248
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 249 VKIWK 253
VKIWK
Sbjct: 182 VKIWK 186
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 64 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWDKR 120
D +++W S + ++ L +GH +R+ AWSP ++ AS S D T +W +
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQD 237
Query: 121 SGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 176
+ Q TL E + + +WS +G LA D V +W+ E ++E A ++
Sbjct: 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 53/259 (20%)
Query: 9 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR 68
GHQ V++V+++P I S G ++ I+LW ++ + E +N
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS-------------AEKENHS 162
Query: 69 LWGKESFGNKFTAKAILSDGHQRTIRETA--WSPCGNFIASASFDATTAVWDKRSGQFEC 126
W +S I ++A P + AS +D VW+ F+
Sbjct: 163 DW--------------VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQI 205
Query: 127 NATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGE----EDEYECAAVINAHIQDV 182
T + HE+ V ++ S NG+++AT +DK + +W++ + E++ + IN
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTIN------ 259
Query: 183 KKVRFHPFDNILASASYDDTVKLFK---EDKA-----EADWINFA-TLKSHTSTVWSLAF 233
++ F+P +A + D VK+F + KA EA+ I A K SLA+
Sbjct: 260 -QIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317
Query: 234 DRIGSRLATCSDDATVKIW 252
+ +G +L D ++ +
Sbjct: 318 NALGKKLFAGFTDGVIRTF 336
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 147
GH + + A S F S+S+D T +WD R+G GH++EV SV +S + +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNR 131
Query: 148 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF----------HPFDNILASA 197
+ + ++ + +W + E ++ A N H V VR+ PF AS
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 198 SYDDTVKLFKEDKAEADWINFA---TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
+D +K++ NF T K+H S V L+ G +AT D + IW
Sbjct: 191 GWDGRLKVWN--------TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 128 ATLEGHENEVKSVTW------SKNGQFLATCSRDKSVWVWEVGEEDEYECAAV----INA 177
LEGH + V S+ +++ L + SRDK+V +W++ EE++ + +
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 178 HIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIG 237
H V + + S+S+D T++L+ + H S V+S+AF
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDN 130
Query: 238 SRLATCSDDATVKIW 252
++ + + +K+W
Sbjct: 131 RQILSAGAEREIKLW 145
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 15/256 (5%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T RV + ++P + + + LW + + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 65 KNIRLWGKESFG----NKFTAKAILS-DGHQRTIRETAWSPCGNFIASASFDATTAVWDK 119
KN + G + F N T + ++ + H IR A P ++ S S D T +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 120 RSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
+ + T EGHE+ V V ++ K+ A+ D++V VW +G+ +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQ 183
Query: 179 IQDVKKVRFHPFDN--ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V V ++P + + +AS D T+K++ ATL+ H S V F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPT 239
Query: 237 GSRLATCSDDATVKIW 252
+ + S+D T+KIW
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 15/256 (5%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T RV + ++P + + + LW + + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 65 KNIRLWGKESFG----NKFTAKAILS-DGHQRTIRETAWSPCGNFIASASFDATTAVWDK 119
KN + G + F N T + ++ + H IR A P ++ S S D T +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 120 RSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
+ + T EGHE+ V V ++ K+ A+ D++V VW +G+ +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQ 183
Query: 179 IQDVKKVRFHPFDN--ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V V ++P + + +AS D T+K++ ATL+ H S V F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPT 239
Query: 237 GSRLATCSDDATVKIW 252
+ + S+D T+KIW
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 46/169 (27%)
Query: 3 NSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLW-------VMVIREPYEKLHGLPV 54
N + GH V +++W P +I+S ED + +W V+ +REP
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 55 ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDAT 113
I +GH + + AW P N + SA D
Sbjct: 124 ----------------------------VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 114 TAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 162
VWD +G + H + + SV WS++G + T RDK V V E
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 85 LSDGHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-----ECNATLEGHENEVK 138
L GH + + AW P N IAS S D T VW+ G E TLEGH V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 139 SVTWSKNGQ-FLATCSRDKSVWVWEVG 164
V W Q L + D + VW+VG
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 174 VINAHIQDVKKVRFHPF-DNILASASYDDTVKLFK-EDKAEADWIN--FATLKSHTSTVW 229
++ H V + + P DN++AS S D TV +++ D + TL+ HT V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 230 SLAFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYD 288
+A+ L + D + +W G A + T D H TIY
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDV---GTGAAVLTLGPDV-----------HPDTIYS 181
Query: 289 ISWCHLTDLIATACGDDAIRIFK 311
+ W LI T+C D +R+ +
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIE 204
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 15/256 (5%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T RV + ++P + + + LW + + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 65 KNIRLWGKESFG----NKFTAKAILS-DGHQRTIRETAWSPCGNFIASASFDATTAVWDK 119
KN + G + F N T + ++ + H IR A P ++ S S D T +W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 120 RSGQFECNATLEGHENEVKSVTWS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 178
+ + T EGHE+ V V ++ K+ A+ D++V VW +G+ +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQ 183
Query: 179 IQDVKKVRFHPFDN--ILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
+ V V ++P + + +AS D T+K++ ATL+ H S V F
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPT 239
Query: 237 GSRLATCSDDATVKIW 252
+ + S+D T+KIW
Sbjct: 240 LPIIISGSEDGTLKIW 255
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 25/226 (11%)
Query: 89 HQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF 148
HQ T+ +T SP G + AS +WD T+ VK ++W +
Sbjct: 60 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 149 LATCSRDKS----VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
+A + V++++ G + + D K R PF I S S D+TV
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRII--SGSDDNTVA 173
Query: 205 LFKEDKAEADWINF-ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGI 263
+F E F +T HT V S+ ++ GS A+ D T+ ++ G G+
Sbjct: 174 IF-----EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGV 227
Query: 264 PTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRI 309
++DS+ H +++ ++W IA+A D I+I
Sbjct: 228 --FEDDSLKNVA------HSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 76 GNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD----KRSGQFECNATLE 131
G F K+ + H + + ++P G+ AS D T +++ ++G FE ++
Sbjct: 177 GPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 132 -GHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
H V +TWS +G +A+ S DK++ +W V
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 10 HQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIR- 68
H G V+ ++W+P GT I+S DK I++W + + EK +PV T +ED+ +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKT--IPVGTR----IEDQQLGI 290
Query: 69 LWGKESF----GNKFT--------AKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 116
+W K++ N F + + GH + I + S G + SA +
Sbjct: 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 117 WDKRSG 122
WD +G
Sbjct: 351 WDISTG 356
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 140 VTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 199
V S + QF+A +D V V+++ E ++ H ++ V F L +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVAT-- 509
Query: 200 DDTVKLFKEDKAEADWINFATLKS-----HTSTVWSLAFDRIGSRLATCSDDATVKIWKE 254
D + K+ A NF + HT+ V +++ RLAT S D +V +W
Sbjct: 510 DQSRKVIPYSVAN----NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Query: 255 YKP 257
KP
Sbjct: 566 NKP 568
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 46/169 (27%)
Query: 3 NSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLW-------VMVIREPYEKLHGLPV 54
N + GH V +++W P +I+S ED + +W V+ +REP
Sbjct: 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 55 ETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDAT 113
I +GH + + AW P N + SA D
Sbjct: 124 ----------------------------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 114 TAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 162
VWD +G + H + + SV WS++G + T RDK V V E
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 25/172 (14%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-----ECNATLEGHENEVKSVT 141
GH + + AW P N IAS S D T VW+ G E TLEGH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 142 WSKNGQ-FLATCSRDKSVWVWEVGEEDEYECAAVI----NAHIQDVKKVRFHPFDNILAS 196
W Q L + D + VW+VG AAV+ + H + V + ++ +
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTG-----AAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Query: 197 ASYDDTVKLFKEDK----AEADWINFATLKSHT-----STVWSLAFDRIGSR 239
+ D V++ + K AE D + T H + + F R+ R
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 191 DNILASASYDDTVKLFK-EDKAEADWIN--FATLKSHTSTVWSLAFDRIGSR-LATCSDD 246
DN++AS S D TV +++ D + TL+ HT V +A+ L + D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 247 ATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA 306
+ +W G A + T D H TIY + W LI T+C D
Sbjct: 154 NVILVWDV---GTGAAVLTLGPDV-----------HPDTIYSVDWSRDGALICTSCRDKR 199
Query: 307 IRIFK 311
+R+ +
Sbjct: 200 VRVIE 204
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 263 IPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMV 322
+P V K V + GH + DI+WC D + + +D + E P+ G +
Sbjct: 62 LPLGKTGRVDKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 323 SFDLVHTEHRAHNQDVNCVAWNP 345
++ E H + V VAW+P
Sbjct: 121 REPVITLE--GHTKRVGIVAWHP 141
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 44/242 (18%)
Query: 47 EKLHGLPVETSLRQLVEDKNIRLWGKE-----------SFGNKFTAKAILSDG------H 89
E++HG + T + VE + + G + S + +T KA+ S G H
Sbjct: 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98
Query: 90 QRTIRETAWSP--CGNFIASASFDATTAVWDKRSGQ----FECNATLEGHENEVKSVTWS 143
+ ++ W P G F S+SFD T VWD + Q F T+ H S
Sbjct: 99 RYSVETVQWYPHDTGMF-TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 144 KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDDT 202
+A +R V + ++ C+ ++ H Q++ V + P +D ILA+AS D
Sbjct: 158 ----LVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 203 VKLFKEDKAEADWINF------------ATLKSHTSTVWSLAFDRIGSRLATCSDDATVK 250
VKL+ +A I + +H V L F G L T D ++
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 251 IW 252
+W
Sbjct: 271 LW 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 35/211 (16%)
Query: 4 SQTLKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLW-------VMVIREPYE-------- 47
S L+GH+ + VSW+P+ ++++ D ++LW ++ + +
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 48 --------KLHGLPVETSLRQLVE---DKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 96
K++GL + L+ D +RLW + N + + ++ ++ T
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298
Query: 97 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 156
C + + +T AV+ SG E L+GH V + N Q L + SRD
Sbjct: 299 VSCGCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356
Query: 157 SVWVW------EVGEEDEYECAAVINAHIQD 181
++ W V ++DE + +N +D
Sbjct: 357 NILAWVPSLYEPVPDDDETTTKSQLNPAFED 387
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 82 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 141
K + + H IR A P ++ S S D T +W+ + + T EGHE+ V V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVA 147
Query: 142 WS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN--ILASAS 198
++ K+ A+ D++V VW +G+ + + V V ++P + + +AS
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 199 YDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 252
D T+K++ ATL+ H S V F + + S+D T+KIW
Sbjct: 206 DDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 82 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 141
KAI GH+R + + ++ G+ + S S D++ +VW +G E TL+GH + S+
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSID 81
Query: 142 WSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNIL 194
++ T S D S+ +W+V +C A + + VK+V F P N
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNG---QCVATWKSPVP-VKRVEFSPCGNYF 130
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 36/221 (16%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHG-------LPVETSLR 59
L GH+ + V +N +G ++ SC +D + +W + E L G + V+ +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 60 QLV---EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD----- 111
V D +I+LW + T K+ + ++ +SPCGN+ A D
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVP------VKRVEFSPCGNYFL-AILDNVMKN 140
Query: 112 -ATTAVW--DKRSGQFECNATLE-------GHE--NEVKSVTWSKNGQFLATCSRDKSVW 159
+ ++ ++ S E E HE + WS G+++ +D +
Sbjct: 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 160 VWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYD 200
++V + YE I+ H + + ++F P ++S D
Sbjct: 201 KYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 172 AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 231
A + H + + +V+++ ++L S S D + ++ E TL HT T+WS+
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSI 80
Query: 232 AFDRIGSRLATCSDDATVKIW 252
D T S D ++K+W
Sbjct: 81 DVDCFTKYCVTGSADYSIKLW 101
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 130 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV--GEEDEYECAAVINAHIQDVKKVRF 187
L GHE + V ++K G L +CS+D S VW GE ++ H + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----LGTLDGHTGTIWSIDV 82
Query: 188 HPFDNILASASYDDTVKL 205
F + S D ++KL
Sbjct: 83 DCFTKYCVTGSADYSIKL 100
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRL 37
++GH G + V+ +PQGT +S GED IRL
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 97 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 156
WS G +I + D + +D S +E +++ HE + + +S + + T SRD
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYD-VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 157 SVWVWEV 163
+ ++ +V
Sbjct: 241 NSFLVDV 247
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 38/285 (13%)
Query: 24 TMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVEDKNIRLWGKESFGNK----F 79
++ +CG D N R+ + P K PV+ + + + K F
Sbjct: 29 SVAEACGFDLNTRVLAFKLDAPEAKK---PVDLRTQHNRPQRPVVTPAKRRFNTTPERVL 85
Query: 80 TAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKS 139
A I+ D + + WS + + + + VW+ SG A + V S
Sbjct: 86 DAPGIIDDYYLNLLD---WSNLN--VVAVALERNVYVWNADSGSVSALAETD-ESTYVAS 139
Query: 140 VTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 199
V WS +G FL+ + V +++V + + A A + + R ++L+S S
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-----HVLSSGSR 194
Query: 200 DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGN 259
+ A TL+ H+S V LA+ G +LA+ +D V+IW
Sbjct: 195 SGAIHHHDVRIANH---QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA----- 246
Query: 260 SAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH-LTDLIATACG 303
S+ K T +H + ++WC ++L+AT G
Sbjct: 247 --------RSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGG 280
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 21/180 (11%)
Query: 6 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREP----------YEKLHGLPVE 55
TL+GH V ++W G ++S G D +++W P + + P +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 56 TSLRQL---VEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASF-- 110
++L DK I W + T A G Q T WSP I S
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVT--SLIWSPHSKEIMSTHGFP 325
Query: 111 DATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYE 170
D ++W S + H+ V S +G+ L+T + D+++ W V + D +
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 27/219 (12%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGED-----KNIRL---WVMVIREPYEKLHGLPVET 56
+T+ GHQ RV +SWN ++SS ++R+ + ++ ++ GL +
Sbjct: 170 RTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 57 SLRQLVEDKN---IRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP-CGNFIAS--ASF 110
QL N +++W S KFT H ++ AW P N +A+ +
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGTM 282
Query: 111 DATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSR--DKSVWVWEVGEEDE 168
D W+ +G N G ++V S+ WS + + + + D ++ +W
Sbjct: 283 DKQIHFWNAATGA-RVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339
Query: 169 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 207
+ I AH V P IL++A+ D+ +K ++
Sbjct: 340 TKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 89 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 146
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 147 QFLATCSRDKSVWVWEVGEEDEYECAAVI----NAHIQDVKKVR--FHPFDNILASASYD 200
L T + + V+ +++C + + H Q + ++ +HP N++ Y
Sbjct: 309 ARLLTTDQKSEIRVYSA---SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 365
Query: 201 D 201
D
Sbjct: 366 D 366
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF 124
+I LW +FG K I G +I ++P N ++S + TT + D +
Sbjct: 143 DIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKK 184
A+ + S+ S + + + T +V + + ++ + + H + V
Sbjct: 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTH 255
Query: 185 VRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 241
V +P D LA+AS D TVK+ ++ + +A +F H V + F G+RL
Sbjct: 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLL 312
Query: 242 TCSDDATVKIW 252
T + ++++
Sbjct: 313 TTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 89 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 146
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 147 QFLATCSRDKSVWVWEVGEEDEYECAAVI----NAHIQDVKKVR--FHPFDNILASASYD 200
L T + + V+ +++C + + H Q + ++ +HP N++ Y
Sbjct: 310 ARLLTTDQKSEIRVYSA---SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 366
Query: 201 D 201
D
Sbjct: 367 D 367
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF 124
+I LW +FG K I G +I ++P N ++S + TT + D +
Sbjct: 144 DIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 200
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKK 184
A+ + S+ S + + + T +V + + ++ + + H + V
Sbjct: 201 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTH 256
Query: 185 VRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 241
V +P D LA+AS D TVK+ ++ + +A +F H V + F G+RL
Sbjct: 257 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLL 313
Query: 242 TCSDDATVKIW 252
T + ++++
Sbjct: 314 TTDQKSEIRVY 324
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 89 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 146
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 147 QFLATCSRDKSVWVWEVGEEDEYECAAVI----NAHIQDVKKVR--FHPFDNILASASYD 200
L T + + V+ +++C + + H Q + ++ +HP N++ Y
Sbjct: 309 ARLLTTDQKSEIRVYSA---SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 365
Query: 201 D 201
D
Sbjct: 366 D 366
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF 124
+I LW +FG K I G +I ++P N ++S + TT + D +
Sbjct: 143 DIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199
Query: 125 ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKK 184
A+ + S+ S + + + T +V + + ++ + + H + V
Sbjct: 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTH 255
Query: 185 VRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 241
V +P D LA+AS D TVK+ ++ + +A +F H V + F G+RL
Sbjct: 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLL 312
Query: 242 TCSDDATVKIW 252
T + ++++
Sbjct: 313 TTDQKSEIRVY 323
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 AHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
AH+ ++ K++F P L S+S D +K++ + D N TL H +TV +A
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIW----SVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 237 GSRLATCSDDATVKIWK 253
G + + S D T+++W+
Sbjct: 190 GRNVLSASLDGTIRLWE 206
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 79 FTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK 138
F + + H I + + P G + S+S D +W + G TL GH V
Sbjct: 125 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVT 182
Query: 139 SVTWSKNGQFLATCSRDKSVWVWEVG 164
+ G+ + + S D ++ +WE G
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECG 208
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 48 KLHGLPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIAS 107
KL P +L +D +++W + N T GH+ T+ + A G + S
Sbjct: 141 KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLS 195
Query: 108 ASFDATTAVWDKRSG 122
AS D T +W+ +G
Sbjct: 196 ASLDGTIRLWECGTG 210
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 177 AHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 236
AH+ ++ K++F P L S+S D +K++ + D N TL H +TV +A
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIW----SVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 237 GSRLATCSDDATVKIWK 253
G + + S D T+++W+
Sbjct: 193 GRNVLSASLDGTIRLWE 209
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 79 FTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK 138
F + + H I + + P G + S+S D +W + G TL GH V
Sbjct: 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVT 185
Query: 139 SVTWSKNGQFLATCSRDKSVWVWEVG 164
+ G+ + + S D ++ +WE G
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECG 211
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 48 KLHGLPVETSLRQLVEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIAS 107
KL P +L +D +++W + N T GH+ T+ + A G + S
Sbjct: 144 KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLS 198
Query: 108 ASFDATTAVWDKRSG 122
AS D T +W+ +G
Sbjct: 199 ASLDGTIRLWECGTG 213
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 30/205 (14%)
Query: 62 VEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRS 121
VE+ +RLW NK A + + H+ I W+ G I S + T +W+ S
Sbjct: 127 VENGELRLW------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180
Query: 122 G----QFECNAT------LEGHENEVK---SVTWSKNGQFLATCSRDKSVWVWEVGEEDE 168
G FE T E H + V W + +F+ + +++V+++ E+
Sbjct: 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTP 239
Query: 169 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTV 228
+ H + + F+ + +L SAS D T++++ + + +S S
Sbjct: 240 ---TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 229 WSLAFDRIG-SRLATCSDDATVKIW 252
W +G ++ +CS D +V++W
Sbjct: 297 W------VGDDKVISCSMDGSVRLW 315
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 38/228 (16%)
Query: 88 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEV---KSVTWSK 144
GHQ + ++ + S S+D T VW + S + L+ H V K V++S+
Sbjct: 102 GHQGNVCSLSFQD--GVVISGSWDKTAKVWKEGSLVYN----LQAHNASVWDAKVVSFSE 155
Query: 145 NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 204
N +FL T S DK++ +W+ ++ + + N ++ + V D S S D +K
Sbjct: 156 N-KFL-TASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVD----DGHFISCSNDGLIK 208
Query: 205 LFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIP 264
L + T + H S V+ + G + +C +D TV+IW + + G+ +
Sbjct: 209 LVDXHTGDV----LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK-ENGSLKQVI 262
Query: 265 TPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKE 312
T S+W C +G I D+ +RIF +
Sbjct: 263 TLPAISIWSVDCXSNGD----------------IIVGSSDNLVRIFSQ 294
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 129 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 188
TL GH+ V S+++ + + S DK+ VW+ G Y A NA + D K V F
Sbjct: 99 TLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWKEGSL-VYNLQAH-NASVWDAKVVSFS 154
Query: 189 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDAT 248
+N +AS D T+KL++ DK F+ + H V LA G +CS+D
Sbjct: 155 --ENKFLTASADKTIKLWQNDKVIK---TFSGI--HNDVVRHLAVVDDG-HFISCSNDGL 206
Query: 249 VKI 251
+K+
Sbjct: 207 IKL 209
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 5 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIREPYEKLHGLPVETSLRQLVED 64
+T +GH+ V+ + P G ++S CGED+ +R+W K +G SL+Q++
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVS-CGEDRTVRIW--------SKENG-----SLKQVITL 264
Query: 65 KNIRLWGKESFGN 77
I +W + N
Sbjct: 265 PAISIWSVDCXSN 277
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 54/177 (30%)
Query: 124 FECNATLEGH-----------ENEVKSVT-------WSKNGQFLATCSRDKSVWVWEVGE 165
++ +ATL+GH +++V SV+ WSK+ Q+L T ++ V
Sbjct: 8 YQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY 67
Query: 166 EDEYECA------AVIN-----------------AHIQDVKKVRFHPFDNILASASYDDT 202
+ E E IN H +V + F D ++ S S+D T
Sbjct: 68 DSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKT 125
Query: 203 VKLFKEDKAEADWINFATLKSHTSTVWS---LAFDRIGSRLATCSDDATVKIWKEYK 256
K++KE L++H ++VW ++F ++ T S D T+K+W+ K
Sbjct: 126 AKVWKEGSL------VYNLQAHNASVWDAKVVSFSE--NKFLTASADKTIKLWQNDK 174
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Query: 73 ESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEG 132
E GNK+ L + H + W+P N I + D VW + ++ +
Sbjct: 36 EKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 94
Query: 133 HENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFD 191
+ V W+ N + A S + + + +E+++ I I+ V + +HP
Sbjct: 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154
Query: 192 NILASASYDDTVKLF-------KEDKAEADW---INFATLKSHTST----VWSLAFDRIG 237
+LA+ S D ++F +E A W + F L +S+ V + F G
Sbjct: 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214
Query: 238 SRLATCSDDATV 249
SR+A S D+TV
Sbjct: 215 SRVAWVSHDSTV 226
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 2 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIR 43
+ LK H G+V V W P I +CG D+N +W + R
Sbjct: 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 130 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 189
L+ H +V V W+ + + TC D++ +VW + + ++ VI + + VR+ P
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWAP 106
Query: 190 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATV 249
+ A S + + ++ W+ K STV SL + LA S D
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 250 KIWKEY-KPGNSAGIPTP 266
+I+ Y K PTP
Sbjct: 167 RIFSAYIKEVEERPAPTP 184
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Query: 73 ESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEG 132
E GNK+ L + H + W+P N I + D VW + ++ +
Sbjct: 36 EKSGNKWVQVHELKE-HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 94
Query: 133 HENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFD 191
+ V W+ N + A S + + + +E+++ I I+ V + +HP
Sbjct: 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154
Query: 192 NILASASYDDTVKLF-------KEDKAEADW---INFATLKSHTST----VWSLAFDRIG 237
+LA+ S D ++F +E A W + F L +S+ V + F G
Sbjct: 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214
Query: 238 SRLATCSDDATV 249
SR+A S D+TV
Sbjct: 215 SRVAWVSHDSTV 226
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 2 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVMVIR 43
+ LK H G+V + W P I +CG D+N +W + R
Sbjct: 43 VQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGR 84
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 130 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 189
L+ H +V + W+ + + TC D++ +VW + + ++ VI + + VR+ P
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWAP 106
Query: 190 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATV 249
+ A S + + ++ W+ K STV SL + LA S D
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 250 KIWKEY-KPGNSAGIPTP 266
+I+ Y K PTP
Sbjct: 167 RIFSAYIKEVEERPAPTP 184
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 108/287 (37%), Gaps = 47/287 (16%)
Query: 78 KFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEV 137
+F+ A + H + + + G A+ S D++ +W + E +++
Sbjct: 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 138 KSVTWSKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP-FDNILA 195
+ WS N + +A + S+ ++ E + A + H VK V+F+ DN+LA
Sbjct: 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 196 SASYDDTVKLFKEDKAEADWINFATLK-----SHTSTVWSLAFDR-IGSRLATCSDDATV 249
S + + ++ +K N+ L S V SLA+++ + A+
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190
Query: 250 KIWK--------------------------EYKPGNSAGIPTP---DNDS---VWKC--- 274
IW E+ P NS + T DND +W
Sbjct: 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250
Query: 275 ---VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGD 318
+ TL+ H + I + WCH + + + G D + NPE+ +
Sbjct: 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAE 296
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 111 DATTAVWDKRSGQFECNATLEGHENEVKSVTW-SKNGQFLATCSRDKSVWVWEVGEEDEY 169
D + +WD R+ +GH+ + S+ W ++ L + RD +V +W +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW---NPESA 295
Query: 170 ECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKL 205
E + A K +F P ++ A AS+D+ +++
Sbjct: 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 105 IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW-SKNGQFLATCSRDKSVWVWE 162
+A+ D ++WD R G + L+ HE E+ V + N + L TCS D S+W W+
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPV-SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 6 TLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWVMVIREPYEKLH-GLP--VETSLRQL 61
+ + H +V V+ +P + ++ SC ED I LW +P ++ P + TSL
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223
Query: 62 VEDKNIRLWGKES-----FGNKFTAKAILSDGHQRTIRETAWSPCG-NFIASASFDATTA 115
+ + ++G E+ K T+ + S H + + +SP F+AS S D + A
Sbjct: 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283
Query: 116 VWDKRSGQFECNATLEGHENEVKSVTWSK-NGQFLATCSRDKSV 158
V D + + + H + V+ TWS N L T D V
Sbjct: 284 VLDSSLSELFRS---QAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 145
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 146 GQFLATCSRDKSVWVWEVGEE 166
G+ + +C D S+ +W + +
Sbjct: 168 GEKIMSCGMDHSLKLWRINSK 188
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYE 47
++GH+ V + ++ G I SCG D +++LW + I+E Y+
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 145
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 146 GQFLATCSRDKSVWVWEVGEE 166
G+ + +C D S+ +W + +
Sbjct: 209 GEKIMSCGMDHSLKLWRINSK 229
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYE 47
++GH+ V + ++ G I SCG D +++LW + I+E Y+
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 145
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 146 GQFLATCSRDKSVWVWEVGEE 166
G+ + +C D S+ +W + +
Sbjct: 173 GEKIMSCGMDHSLKLWRINSK 193
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYE 47
++GH+ V + ++ G I SCG D +++LW + I+E Y+
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 145
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 146 GQFLATCSRDKSVWVWEVGEE 166
G+ + +C D S+ +W + +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK 192
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYE 47
++GH+ V + ++ G I SCG D +++LW + I+E Y+
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 88 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 145
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 146 GQFLATCSRDKSVWVWEVGEE 166
G+ + +C D S+ +W + +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK 192
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 7 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWVM-------VIREPYE 47
++GH+ V + ++ G I SCG D +++LW + I+E Y+
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 130 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ--DVKKVRF 187
++ H N VK V ++ G +ATCS+D + + V + D + + +R+
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGT--LIRVFQTDNGVLVREFRRGLDRTSIIDMRW 232
Query: 188 HPFDNILASASYDDTVKLFK-----EDKAEA--DWINFATLKSHTSTVWSLAFDRI---- 236
P + LA S T+ +F+ E+K DWIN +S WS+ ++
Sbjct: 233 SPDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDWINIKYFQSE----WSICNFKLKVSK 288
Query: 237 GS---RLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 272
GS ++A SD V +W + ++ + D++ VW
Sbjct: 289 GSNDCKIAWISDTGLVIVWPNRRLADTFKLNYNDDEHVW 327
>pdb|1M65|A Chain A, Ycdx Protein
pdb|1M68|A Chain A, Ycdx Protein, Trinuclear Zinc Site
pdb|1PB0|A Chain A, Ycdx Protein In Autoinhibited State
pdb|1PB0|B Chain B, Ycdx Protein In Autoinhibited State
pdb|1PB0|C Chain C, Ycdx Protein In Autoinhibited State
Length = 245
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 377 DNVGLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGTDLIIA-YHPPIFAPLKRVTNDK 435
D VG+L +IKN+ ID + ++ + DLIIA +H P+FAP + TN
Sbjct: 64 DGVGIL---RGIEANIKNVDGEIDCSGKMF-----DSLDLIIAGFHEPVFAPHDKATN-- 113
Query: 436 WKERVVSTCLAHNIAVYS 453
+ +++T + N+ + S
Sbjct: 114 -TQAMIATIASGNVHIIS 130
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 66 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFE 125
++R W + G + H + + WS G+ + +AS D T +WD S Q
Sbjct: 65 DVRCWEVQDSGQTIPKAQQM---HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-- 119
Query: 126 CNATLEGHENEVKSVTWSK--NGQFLATCSRDKSVWVWEV 163
+ H+ VK++ W K N + T S DK++ W+
Sbjct: 120 -AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 102 GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 161
GNF+ + S+ W+ + + H V V WS +G + T S DK+ +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 162 EVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASYDDTVKL 205
++ A I H VK + + P + + + S+D T+K
Sbjct: 114 DLSSNQ----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%)
Query: 129 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 188
T H+ V V W+ + TCS+D++ +V+E + ++ V+ + VR+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 189 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 231
P ++ A S + + ++ W++ + ST+ SL
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 73 ESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKR-SGQFECNATLE 131
E GN + SD H + + W+P N I + S D V++KR G ++ L
Sbjct: 39 EQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97
Query: 132 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPF 190
V WS N A S + + V +E+++ + + ++ + + +HP
Sbjct: 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157
Query: 191 DNILASASYDDTVKLFK------EDKAEAD-W---INFATL-KSHTSTVW--SLAFDRIG 237
+ +LA+ D + + K EA W + F T+ + S W ++ F G
Sbjct: 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG 217
Query: 238 SRLATCSDDATVKI 251
+ LA D++V I
Sbjct: 218 NALAYAGHDSSVTI 231
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 140 VTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINA 177
V S G+ +T R ++V V E EED Y C VI+A
Sbjct: 26 VVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISA 63
>pdb|1NMO|A Chain A, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|B Chain B, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|C Chain C, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|D Chain D, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|E Chain E, Structural Genomics, Protein Ybgi, Unknown Function
pdb|1NMO|F Chain F, Structural Genomics, Protein Ybgi, Unknown Function
Length = 247
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 380 GLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGTDLIIAYHPPIFAPLKRVTNDKWKER 439
GL +E T ++ I+ + + +L EAV G D +I +H + V + R
Sbjct: 26 GLQVEGKET---VQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGXKRNR 82
Query: 440 VVSTCLAHNIAVYSPHTTWDA 460
+ T LA++I +Y H DA
Sbjct: 83 -LKTLLANDINLYGWHLPLDA 102
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/266 (18%), Positives = 92/266 (34%), Gaps = 43/266 (16%)
Query: 67 IRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFEC 126
+++W GNK + IR P G + +T ++WD +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 127 NATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV----------GEEDEYECAAVIN 176
A L ++ S + + +C D ++ VW++ G D C + N
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 177 AH----------------IQDVKKVRFHPFDNILASASYDDTVKLF----KEDKAEADWI 216
+++ ++++ H F + + S Y T + + E +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 217 NFA---TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWK 273
N L H S V SL F G + D + W+ P ++ + ++ SV
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR--TPYGASIFQSKESSSVLS 311
Query: 274 C--------VCTLSGHHGRTIYDISW 291
C + T SG T+Y++ +
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEVIY 337
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 253 KEYKPGNSAGIPTPDNDSVWKC-VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 311
KE K PTP D + V T++GH R Y S HL C +D K
Sbjct: 90 KELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLXLK 149
Query: 312 ENPEAG 317
E+ +G
Sbjct: 150 EDENSG 155
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 78 KFTAKAILSDGHQRTIRETAWSP-CGNFIASASFDATTAVWDKRSGQF--ECNATLEGHE 134
KF+A +R+ +SP G F+ + D + +D +SG+F E +
Sbjct: 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 253
Query: 135 NEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
+ +++W + +F AT D ++ VW+V
Sbjct: 254 GGIFALSWLDSQKF-ATVGADATIRVWDV 281
>pdb|1NMP|A Chain A, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|B Chain B, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|C Chain C, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|D Chain D, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|E Chain E, Structural Genomics, Ybgi Protein, Unknown Function
pdb|1NMP|F Chain F, Structural Genomics, Ybgi Protein, Unknown Function
Length = 247
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 380 GLLIEPHNTTKHIKNIMLTIDLTDEVLKEAVENGTDLIIAYHPPIFAPLKRVTNDKWKER 439
GL +E T ++ I+ + + +L EAV G D +I +H + V + R
Sbjct: 26 GLQVEGKET---VQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNR 82
Query: 440 VVSTCLAHNIAVYSPHTTWDA 460
+ T LA++I +Y H DA
Sbjct: 83 -LKTLLANDINLYGWHLPLDA 102
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 78 KFTAKAILSDGHQRTIRETAWSP-CGNFIASASFDATTAVWDKRSGQF--ECNATLEGHE 134
KF+A +R+ +SP G F+ + D + +D +SG+F E +
Sbjct: 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 253
Query: 135 NEVKSVTWSKNGQFLATCSRDKSVWVWEV 163
+ +++W + +F AT D ++ VW+V
Sbjct: 254 GGIFALSWLDSQKF-ATVGADATIRVWDV 281
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 180 QDVKKVRFHPFDNILASASY-DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIG 237
+D KK + +L+S Y DDTVK F+ED + + + +LK TV F+ +
Sbjct: 92 EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,971,594
Number of Sequences: 62578
Number of extensions: 673184
Number of successful extensions: 2830
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 531
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)