BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14817
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 99/131 (75%), Gaps = 1/131 (0%)
Query: 4 TGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 63
+G RLA+CSDD TV+IW++Y PGN G+ +D WKC+CTLSG H RTIYDI+WC LT
Sbjct: 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT 264
Query: 64 DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
+ATACGDDAIR+F+E+P + D +F L H+AH+QDVNCVAWNP PG+LASCS
Sbjct: 265 GALATACGDDAIRVFQEDPNS-DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323
Query: 124 DDGDVKLWQIK 134
DDG+V W+ +
Sbjct: 324 DDGEVAFWKYQ 334
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 22/133 (16%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G+ LA+C D ++IW + DS W C LS H RT+ ++W +
Sbjct: 28 GTLLASCGGDRRIRIWGT------------EGDS-WICKSVLSEGHQRTVRKVAWSPCGN 74
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
+A+A D I+K+N + F+ V T H +V VAW P +LA+CS
Sbjct: 75 YLASASFDATTCIWKKNQD-------DFECV-TTLEGHENEVKSVAWAP-SGNLLATCSR 125
Query: 125 DGDVKLWQIKLEN 137
D V +W++ E+
Sbjct: 126 DKSVWVWEVDEED 138
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 4 TGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 63
+G+ LATCS D +V +W+ D + ++CV L+ H + + + W
Sbjct: 116 SGNLLATCSRDKSVWVWE------------VDEEDEYECVSVLNSH-TQDVKHVVWHPSQ 162
Query: 64 DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
+L+A+A DD +++++E + D V + H V +A++P LASCS
Sbjct: 163 ELLASASYDDTVKLYREE----EDDWVCCATL----EGHESTVWSLAFDP-SGQRLASCS 213
Query: 124 DDGDVKLWQIKL 135
DD V++W+ L
Sbjct: 214 DDRTVRIWRQYL 225
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 8 LATCSDDATVKIWKEYKP 25
LA+CSDD V WK +P
Sbjct: 319 LASCSDDGEVAFWKYQRP 336
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
M G R+ATCS D T+KI++ + K + TL+GH G ++ + W
Sbjct: 17 MDYYGKRMATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEG-PVWRVDWA 62
Query: 61 H--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG- 117
H ++A+ D + I+KE E G ++ H H+ VN V W P G
Sbjct: 63 HPKFGTILASCSYDGKVMIWKE--ENGRWSQIAV------HAVHSASVNSVQWAPHEYGP 114
Query: 118 MLASCSDDGDVKLWQIK 134
ML S DG V + + K
Sbjct: 115 MLLVASSDGKVSVVEFK 131
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 43 VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAH 102
+ ++ H I+D + +AT D I+IF+ E + L+ T H
Sbjct: 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-------THKLIDT-LTGH 52
Query: 103 NQDVNCVAW-NPVVPGMLASCSDDGDVKLWQ 132
V V W +P +LASCS DG V +W+
Sbjct: 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTD 64
S +A+ S D T IW T DN+ WK ++ SW +
Sbjct: 220 SYMASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267
Query: 65 LIATACGDDAIRIFKENPEA 84
++A + GD+ + ++KEN E
Sbjct: 268 VLALSGGDNKVTLWKENLEG 287
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH--L 62
G RLATCS D T+KI++ K + TL+GH G ++ + W H
Sbjct: 21 GKRLATCSSDKTIKIFEV-------------EGETHKLIDTLTGHEG-PVWRVDWAHPKF 66
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 121
++A+ D + I+KE E G ++ H H+ VN V W P G +L
Sbjct: 67 GTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLV 118
Query: 122 CSDDGDVKLWQIK 134
S DG V + + K
Sbjct: 119 ASSDGKVSVVEFK 131
Score = 30.8 bits (68), Expect = 0.27, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 46 LSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQD 105
++ H I+D + +AT D I+IF+ E + L+ T H
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------THKLIDT-LTGHEGP 55
Query: 106 VNCVAW-NPVVPGMLASCSDDGDVKLWQ 132
V V W +P +LASCS DG V +W+
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVLIWK 83
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTD 64
S LA+ S D T IW T DN+ WK ++ SW +
Sbjct: 220 SYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267
Query: 65 LIATACGDDAIRIFKENPEA 84
++A + GD+ + ++KEN E
Sbjct: 268 VLALSGGDNKVTLWKENLEG 287
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH--L 62
G RLATCS D T+KI++ + K + TL+GH G ++ + W H
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEG-PVWRVDWAHPKF 66
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 121
++A+ D + I+KE E G ++ H H+ VN V W P G +L
Sbjct: 67 GTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLV 118
Query: 122 CSDDGDVKLWQIK 134
S DG V + + K
Sbjct: 119 ASSDGKVSVVEFK 131
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 43 VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAH 102
+ ++ H I+D + +AT D I+IF+ E + L+ T H
Sbjct: 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------THKLIDT-LTGH 52
Query: 103 NQDVNCVAW-NPVVPGMLASCSDDGDVKLWQ 132
V V W +P +LASCS DG V +W+
Sbjct: 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTD 64
S LA+ S D T IW T DN+ WK ++ SW +
Sbjct: 220 SYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267
Query: 65 LIATACGDDAIRIFKENPEA 84
++A + GD+ + ++KEN E
Sbjct: 268 VLALSGGDNKVTLWKENLEG 287
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH--L 62
G RLATCS D T+KI++ + K + TL+GH G ++ + W H
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEG-PVWRVDWAHPKF 68
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 121
++A+ D + I+KE E G ++ H H+ VN V W P G +L
Sbjct: 69 GTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNSVQWAPHEYGPLLLV 120
Query: 122 CSDDGDVKLWQIK 134
S DG V + + K
Sbjct: 121 ASSDGKVSVVEFK 133
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 42 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRA 101
+ ++ H I+D + +AT D I+IF+ E + L+ T
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------THKLIDT-LTG 53
Query: 102 HNQDVNCVAW-NPVVPGMLASCSDDGDVKLWQ 132
H V V W +P +LASCS DG V +W+
Sbjct: 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTD 64
S LA+ S D T IW T DN+ WK ++ SW +
Sbjct: 222 SYLASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 269
Query: 65 LIATACGDDAIRIFKENPEA 84
++A + GD+ + ++KEN E
Sbjct: 270 VLALSGGDNKVTLWKENLEG 289
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
M G+RLATCS D +VKI + N I D L GH G ++ ++W
Sbjct: 21 MDYYGTRLATCSSDRSVKI---FDVRNGGQILIAD----------LRGHEG-PVWQVAWA 66
Query: 61 H--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGM 118
H +++A+ D + I++E E G +++ H EH H+ VN V W P G+
Sbjct: 67 HPMYGNILASCSYDRKVIIWRE--ENG-----TWEKSH-EHAGHDSSVNSVCWAPHDYGL 118
Query: 119 LASC-SDDGDVKL 130
+ +C S DG + L
Sbjct: 119 ILACGSSDGAISL 131
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVV---PGMLASC 122
A+ D+ I+++KE + + + AH+ V VAW P + +ASC
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLE-------AHSDWVRDVAWAPSIGLPTSTIASC 234
Query: 123 SDDGDVKLW 131
S DG V +W
Sbjct: 235 SQDGRVFIW 243
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
S +A+CS D V IW T D+ S L ++ +SW ++
Sbjct: 229 STIASCSQDGRVFIW------------TCDDASSNTWSPKLLHKFNDVVWHVSWSITANI 276
Query: 66 IATACGDDAIRIFKEN 81
+A + GD+ + ++KE+
Sbjct: 277 LAVSGGDNKVTLWKES 292
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 7 RLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLI 66
RL + SDD+TV++WK Y + D+ W C L H R +Y+++W LI
Sbjct: 213 RLCSGSDDSTVRVWK-YMGDD------EDDQQEWVCEAILPDVHKRQVYNVAWG-FNGLI 264
Query: 67 ATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPV-VPGMLASCSDD 125
A+ D + +++E D + F H + ++N V W + +LA+ DD
Sbjct: 265 ASVGADGVLAVYEEV----DGEWKVFAKRALCHGVY--EINVVKWLELNGKTILATGGDD 318
Query: 126 GDVKLWQIK 134
G V W ++
Sbjct: 319 GIVNFWSLE 327
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
LA+ S D TV+IWK+Y D+D W+CV L+GH G T++ + +
Sbjct: 168 LASSSYDDTVRIWKDY-----------DDD--WECVAVLNGHEG-TVWSSDFDKTEGVFR 213
Query: 68 TACG--DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDD 125
G D +R++K + D D + H + V VAW G++AS D
Sbjct: 214 LCSGSDDSTVRVWKYMGDDED-DQQEWVCEAILPDVHKRQVYNVAWG--FNGLIASVGAD 270
Query: 126 GDVKLWQ 132
G + +++
Sbjct: 271 GVLAVYE 277
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G LATCS D +V IW+ + G ++C+ L H + + + W
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEE-----------YECISVLQ-EHSQDVKHVIWHPSEA 166
Query: 65 LIATACGDDAIRIFKE 80
L+A++ DD +RI+K+
Sbjct: 167 LLASSSYDDTVRIWKD 182
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH--L 62
G R ATCS D T+KI++ + K + TL+GH G ++ + W H
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEG-PVWRVDWAHPKF 66
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 121
++A+ D + I+KE E G ++ H H+ VN V W P G L
Sbjct: 67 GTILASCSYDGKVXIWKE--ENGRWSQIAV------HAVHSASVNSVQWAPHEYGPXLLV 118
Query: 122 CSDDGDVKLWQIK 134
S DG V + + K
Sbjct: 119 ASSDGKVSVVEFK 131
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTD 64
S A+ S D T IW T DN+ WK ++ SW +
Sbjct: 220 SYXASVSQDRTCIIW------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267
Query: 65 LIATACGDDAIRIFKENPEA 84
++A + GD+ + ++KEN E
Sbjct: 268 VLALSGGDNKVTLWKENLEG 287
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G +A+ SDD TVK+W + + TL+GH +++ +++
Sbjct: 28 GQTIASASDDKTVKLWNRNG----------------QLLQTLTGHS-SSVWGVAFSPDGQ 70
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
IA+A D ++++ N + L+ T H+ V VA++P +AS SD
Sbjct: 71 TIASASDDKTVKLWNRNGQ----------LLQTL-TGHSSSVRGVAFSPDGQ-TIASASD 118
Query: 125 DGDVKLW 131
D VKLW
Sbjct: 119 DKTVKLW 125
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G +A+ SDD TVK+W + + TL+GH +++ +++
Sbjct: 151 GQTIASASDDKTVKLWNRNG----------------QLLQTLTGHS-SSVWGVAFSPDGQ 193
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
IA+A D ++++ N + L+ T H+ V VA++P +AS SD
Sbjct: 194 TIASASDDKTVKLWNRNGQ----------LLQTL-TGHSSSVRGVAFSPDGQ-TIASASD 241
Query: 125 DGDVKLW 131
D VKLW
Sbjct: 242 DKTVKLW 248
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 29/124 (23%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
+A+ SDD TVK+W + + TL+GH ++ +++ IA
Sbjct: 441 IASASDDKTVKLWNRNG----------------QLLQTLTGHS-SSVRGVAFSPDGQTIA 483
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+A D ++++ N + L+ T H+ V VA++P +AS SDD
Sbjct: 484 SASDDKTVKLWNRNGQ----------LLQTL-TGHSSSVRGVAFSPDGQ-TIASASDDKT 531
Query: 128 VKLW 131
VKLW
Sbjct: 532 VKLW 535
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 38/152 (25%)
Query: 5 GSRLATCSDDATVKIWK------EYKPGNSAGI----PTPDNDSV-----------W--- 40
G +A+ SDD TVK+W + G+S+ + +PD ++ W
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Query: 41 -KCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH 99
+ + TL+GH +++ +++ IA+A D ++++ N + L+ T
Sbjct: 334 GQHLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQTL- 381
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 131
H+ V VA++P +AS SDD VKLW
Sbjct: 382 TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 412
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 29/127 (22%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G +A+ SDD TVK+W + + TL+GH ++ +++
Sbjct: 479 GQTIASASDDKTVKLWNRNG----------------QLLQTLTGHS-SSVRGVAFSPDGQ 521
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
IA+A D ++++ N + L+ T H+ V VA++P +AS S
Sbjct: 522 TIASASDDKTVKLWNRNGQ----------LLQTL-TGHSSSVWGVAFSPDGQ-TIASASS 569
Query: 125 DGDVKLW 131
D VKLW
Sbjct: 570 DKTVKLW 576
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 31/131 (23%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
S + + S+DAT+K+W +Y+ G+ TL GH ++ DIS+ H L
Sbjct: 121 SVMVSASEDATIKVW-DYETGDFER--------------TLKGHTD-SVQDISFDHSGKL 164
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG--MLASCS 123
+A+ D I+++ D F+ + T H H+ +V+ V+ ++P + S S
Sbjct: 165 LASCSADMTIKLW---------DFQGFECIRTMH-GHDHNVSSVS---IMPNGDHIVSAS 211
Query: 124 DDGDVKLWQIK 134
D +K+W+++
Sbjct: 212 RDKTIKMWEVQ 222
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 57/158 (36%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
++ G + + S D T+K+W E + G CV T +GH W
Sbjct: 200 IMPNGDHIVSASRDKTIKMW-EVQTGY--------------CVKTFTGHR-------EWV 237
Query: 61 HLTD------LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPV 114
+ LIA+ D +R++ +V+ E R H V C++W P
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVW----------VVATKECKAELREHRHVVECISWAPE 287
Query: 115 V------------------PG-MLASCSDDGDVKLWQI 133
PG L S S D +K+W +
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 29/132 (21%)
Query: 3 QTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 62
+G LA+CS D T+K+W + ++C+ T+ G H + +S
Sbjct: 160 HSGKLLASCSADMTIKLW---------------DFQGFECIRTMHG-HDHNVSSVSIMPN 203
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 121
D I +A D I++++ V H + V V P G ++AS
Sbjct: 204 GDHIVSASRDKTIKMWE----------VQTGYCVKTFTGHREWVRMV--RPNQDGTLIAS 251
Query: 122 CSDDGDVKLWQI 133
CS+D V++W +
Sbjct: 252 CSNDQTVRVWVV 263
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 41/128 (32%)
Query: 50 HGRTIYDISWC----HLTDLIATACGDDAIRIF----KENPEAGDSDMVSFDL------- 94
H I ISW LIAT C D IRIF K +P A + + + ++
Sbjct: 211 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 270
Query: 95 -------------------------VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVK 129
+ +EH HN +V V+WN + +L+S DDG V+
Sbjct: 271 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVR 329
Query: 130 LWQIKLEN 137
LW+ N
Sbjct: 330 LWKATYSN 337
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 50 HGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCV 109
H ++D+ + +AT D I++FK D D +++L + RAH+ + +
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----DKDTSNWELSDS-WRAHDSSIVAI 61
Query: 110 AW-NPVVPGMLASCSDDGDVKLWQ 132
W +P ++AS S D VKLW+
Sbjct: 62 DWASPEYGRIIASASYDKTVKLWE 85
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC--HL 62
G +ATCS D +K++K K ++ + +DS W+ H +I I W
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWEL----SDS-WRA-------HDSSIVAIDWASPEY 68
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
+IA+A D +++++E+P+ + ++ + T + + + V + P G+ +C
Sbjct: 69 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS-LYSVKFAPAHLGLKLAC 127
Query: 123 -SDDGDVKLW 131
+DG ++L+
Sbjct: 128 LGNDGILRLY 137
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 41/128 (32%)
Query: 50 HGRTIYDISWC----HLTDLIATACGDDAIRIF----KENPEAGDSDMVSFDL------- 94
H I ISW LIAT C D IRIF K +P A + + + ++
Sbjct: 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272
Query: 95 -------------------------VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVK 129
+ +EH HN +V V+WN + +L+S DDG V+
Sbjct: 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVR 331
Query: 130 LWQIKLEN 137
LW+ N
Sbjct: 332 LWKATYSN 339
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 50 HGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCV 109
H ++D+ + +AT D I++FK D D +++L + RAH+ + +
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----DKDTSNWELSDS-WRAHDSSIVAI 63
Query: 110 AW-NPVVPGMLASCSDDGDVKLWQ 132
W +P ++AS S D VKLW+
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE 87
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC--HL 62
G +ATCS D +K++K K ++ + +DS W+ H +I I W
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWEL----SDS-WRA-------HDSSIVAIDWASPEY 70
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
+IA+A D +++++E+P+ + ++ + T + + + V + P G+ +C
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS-LYSVKFAPAHLGLKLAC 129
Query: 123 -SDDGDVKLW 131
+DG ++L+
Sbjct: 130 LGNDGILRLY 139
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 7 RLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLI 66
L + SDD TV +W +AG P + +GH + D++W L + +
Sbjct: 194 HLLSASDDHTVCLWD-----INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESL 244
Query: 67 ATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
+ DD + + N + S +V AH +VNC+++NP +LA+ S
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGS 295
Query: 124 DDGDVKLWQIK 134
D V LW ++
Sbjct: 296 ADKTVALWDLR 306
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
LAT S D TV +W D ++ + T H I+ + W + I
Sbjct: 291 LATGSADKTVALW--------------DLRNLKLKLHTFESHKDE-IFQVHWSPHNETIL 335
Query: 68 TACGDDA------IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLAS 121
+ G D + E A D++ +L+ H H ++ +WNP P ++ S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICS 394
Query: 122 CSDDGDVKLWQI 133
S+D +++WQ+
Sbjct: 395 VSEDNIMQIWQM 406
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WN + G L S SDD V LW I
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI 209
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 41/128 (32%)
Query: 50 HGRTIYDISWC----HLTDLIATACGDDAIRIF----KENPEAGDSDMVS---FD----- 93
H I ISW LIAT C D IRIF K +P A + + + FD
Sbjct: 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADV 272
Query: 94 ------------------------LVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVK 129
+ +EH HN +V V+WN + +L+S DDG V+
Sbjct: 273 DXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVR 331
Query: 130 LWQIKLEN 137
LW+ N
Sbjct: 332 LWKATYSN 339
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 50 HGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCV 109
H ++D+ + +AT D I++FK D D +++L + RAH+ + +
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-----DKDTSNWELSDS-WRAHDSSIVAI 63
Query: 110 AW-NPVVPGMLASCSDDGDVKLWQ 132
W +P ++AS S D VKLW+
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE 87
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC--HL 62
G +ATCS D +K++K K ++ + +DS W+ H +I I W
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWEL----SDS-WRA-------HDSSIVAIDWASPEY 70
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
+IA+A D +++++E+P+ + ++ + T + + + V + P G+ +C
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS-LYSVKFAPAHLGLKLAC 129
Query: 123 -SDDGDVKLW 131
+DG ++L+
Sbjct: 130 LGNDGILRLY 139
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 7 RLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD-L 65
L + SDD TV +W +AG P + +GH + D++W L + L
Sbjct: 194 HLLSASDDHTVCLWD-----INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESL 244
Query: 66 IATACGDDAIRIF--KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
+ D + I+ + N + S +V AH +VNC+++NP +LA+ S
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGS 295
Query: 124 DDGDVKLWQIK 134
D V LW ++
Sbjct: 296 ADKTVALWDLR 306
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 22/131 (16%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
LAT S D TV +W D ++ + T H I+ + W + I
Sbjct: 291 LATGSADKTVALW--------------DLRNLKLKLHTFESHKDE-IFQVHWSPHNETIL 335
Query: 68 TACGDDA------IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLAS 121
+ G D + E A D++ +L+ H H ++ +WNP P ++ S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICS 394
Query: 122 CSDDGDVKLWQ 132
S+D ++WQ
Sbjct: 395 VSEDNIXQIWQ 405
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WN + G L S SDD V LW I
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI 209
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD- 64
S +ATCS D VKIW + + K V T H + ++ CH T+
Sbjct: 670 SYIATCSADKKVKIW---------------DSATGKLVHTYDEHSEQ----VNCCHFTNK 710
Query: 65 ----LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLA 120
L+AT D ++++ N + + M H VN ++P +LA
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSPD-DELLA 759
Query: 121 SCSDDGDVKLWQIKLEN 137
SCS DG ++LW ++ N
Sbjct: 760 SCSADGTLRLWDVRSAN 776
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 33/131 (25%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
SRL + S D TVK+W V T GR D + CH +
Sbjct: 1056 SRLLSWSFDGTVKVWN---------------------VIT-----GRIERDFT-CHQGTV 1088
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLASCS 123
++ A DA + F + + SFDL+ H + HN V C A++ + G+L +
Sbjct: 1089 LSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS--LDGILLATG 1145
Query: 124 DD-GDVKLWQI 133
DD G++++W +
Sbjct: 1146 DDNGEIRIWNV 1156
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 GSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK 41
GS T SDD T+++W+ K NSA + + D V++
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ 931
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD- 64
S +ATCS D VKIW + + K V T H + ++ CH T+
Sbjct: 677 SYIATCSADKKVKIW---------------DSATGKLVHTYDEHSEQ----VNCCHFTNK 717
Query: 65 ----LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLA 120
L+AT D ++++ N + + M H VN ++P +LA
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSPD-DELLA 766
Query: 121 SCSDDGDVKLWQIKLEN 137
SCS DG ++LW ++ N
Sbjct: 767 SCSADGTLRLWDVRSAN 783
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 33/131 (25%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
SRL + S D TVK+W V T GR D + CH +
Sbjct: 1063 SRLLSWSFDGTVKVWN---------------------VIT-----GRIERDFT-CHQGTV 1095
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLASCS 123
++ A DA + F + + SFDL+ H + HN V C A++ + G+L +
Sbjct: 1096 LSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS--LDGILLATG 1152
Query: 124 DD-GDVKLWQI 133
DD G++++W +
Sbjct: 1153 DDNGEIRIWNV 1163
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 GSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK 41
GS T SDD T+++W+ K NSA + + D V++
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ 938
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+ +W TP V +GH + D++W L + +
Sbjct: 199 LLSASDDHTICLWDINA--------TPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLF 249
Query: 68 TACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
+ DD + + N + S V AH +VNC+++NP +LA+ S
Sbjct: 250 GSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTAEVNCLSFNPYSEFILATGSA 300
Query: 125 DGDVKLWQIK 134
D V LW ++
Sbjct: 301 DKTVALWDLR 310
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WNP + G L S SDD + LW I
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 213
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIF----------KENPEAGDSDMVSFDLVHTE 98
H I+ + W H ++A++ D + ++ E+ E G +++
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------ 375
Query: 99 HRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H H ++ +WNP P ++ S S+D +++WQ+
Sbjct: 376 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 108
H + Y +SW +L + +A D I ++ N + ++ + T H A +DV
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV-- 239
Query: 109 VAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
AW+ + + S +DD + +W + N
Sbjct: 240 -AWHLLHESLFGSVADDQKLMIWDTRNNN 267
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD-LI 66
L + SDD T+ +W P V +GH + D+SW L + L
Sbjct: 193 LLSASDDHTICLWDISA--------VPKEGKVVDAKTIFTGHTA-VVEDVSWHLLHESLF 243
Query: 67 ATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDG 126
+ D + I+ S D AH +VNC+++NP +LA+ S D
Sbjct: 244 GSVADDQKLMIWDTRSNNTSKPSHSVD-------AHTAEVNCLSFNPYSEFILATGSADK 296
Query: 127 DVKLWQIK 134
V LW ++
Sbjct: 297 TVALWDLR 304
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIF-------KENPEAGDSDMVSFDLVHTEHRA 101
H I+ + W H ++A++ D + ++ +++PE + +H H A
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Query: 102 HNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
D +WNP P ++ S S+D +++WQ+
Sbjct: 376 KISDF---SWNPNEPWVICSVSEDNIMQVWQM 404
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WNP + G L S SDD + LW I
Sbjct: 174 RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI 207
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 50 HGRTIYDISW-CHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 108
H + Y +SW +L+ + +A D I ++ + + +V + T H A +DV
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV-- 233
Query: 109 VAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
+W+ + + S +DD + +W + N
Sbjct: 234 -SWHLLHESLFGSVADDQKLMIWDTRSNN 261
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+ +W TP V +GH + D++W L + +
Sbjct: 201 LLSASDDHTICLWDINA--------TPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLF 251
Query: 68 TACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
+ DD + + N + S V AH +VNC+++NP +LA+ S
Sbjct: 252 GSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTAEVNCLSFNPYSEFILATGSA 302
Query: 125 DGDVKLWQIK 134
D V LW ++
Sbjct: 303 DKTVALWDLR 312
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WNP + G L S SDD + LW I
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 215
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIF----------KENPEAGDSDMVSFDLVHTE 98
H I+ + W H ++A++ D + ++ E+ E G +++
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------ 377
Query: 99 HRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H H ++ +WNP P ++ S S+D +++WQ+
Sbjct: 378 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 108
H + Y +SW +L + +A D I ++ N + ++ + T H A +DV
Sbjct: 184 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV-- 241
Query: 109 VAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
AW+ + + S +DD + +W + N
Sbjct: 242 -AWHLLHESLFGSVADDQKLMIWDTRNNN 269
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+ +W TP V +GH + D++W L + +
Sbjct: 197 LLSASDDHTICLWDINA--------TPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLF 247
Query: 68 TACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
+ DD + + N + S V AH +VNC+++NP +LA+ S
Sbjct: 248 GSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTAEVNCLSFNPYSEFILATGSA 298
Query: 125 DGDVKLWQIK 134
D V LW ++
Sbjct: 299 DKTVALWDLR 308
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
R H ++ ++WNP + G L S SDD + LW I
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIF----------KENPEAGDSDMVSFDLVHTE 98
H I+ + W H ++A++ D + ++ E+ E G +++
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------ 373
Query: 99 HRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H H ++ +WNP P ++ S S+D +++WQ+
Sbjct: 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 50 HGRTIYDISWC-HLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 108
H + Y +SW +L + +A D I ++ N + ++ + T H A +DV
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV-- 237
Query: 109 VAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
AW+ + + S +DD + +W + N
Sbjct: 238 -AWHLLHESLFGSVADDQKLMIWDTRNNN 265
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
+ATCS D VKIW G ++ V C T S HH L+A
Sbjct: 678 IATCSVDKKVKIWNSM-TGELVHTYDEHSEQVNCCHFTNSSHHL-------------LLA 723
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
T D ++++ N + + M H VN ++P +LASCS DG
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSPD-DKLLASCSADGT 772
Query: 128 VKLW 131
+KLW
Sbjct: 773 LKLW 776
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 31/130 (23%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
SRL + S D TVK+W I T + + + C H T+ H
Sbjct: 1062 SRLLSWSFDGTVKVW---------NIITGNKEKDFVC-------HQGTVLSCDISHDATK 1105
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLASCS 123
++ D +I+ SFDL+ H R HN V C A++ V +LA+
Sbjct: 1106 FSSTSADKTAKIW------------SFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGD 1152
Query: 124 DDGDVKLWQI 133
D+G++++W +
Sbjct: 1153 DNGEIRIWNV 1162
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 5 GSRLATCSDDATVKIWKEYKP-GNSAGIPTPDNDSVWK--CVCTLSGHHGRTIYDISWC- 60
GS T SDD T+++W+ K NSA + + D V++ V L+ H R + I+
Sbjct: 900 GSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRT 959
Query: 61 ----HLTDL-IATACGDDAIRIFKENPEAGDSDMVSF--DLVHTEHRAHNQDVNCVAWNP 113
+LT+ ++ C ++ E G +++ + + H + V + +
Sbjct: 960 GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTA 1019
Query: 114 VVPGMLASCSDDGDVKLWQIKLEN 137
+++S SDD ++++W +L+
Sbjct: 1020 DEKTLISS-SDDAEIQVWNWQLDK 1042
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 31 IPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMV 90
+P V K V + GH + DI+WC D + + +D + E P+ G +
Sbjct: 62 LPLGKTGRVDKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 91 SFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
++ E H + V VAW+P +L S D + +W +
Sbjct: 121 REPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 50 HGRTIYDISWCHLTDLIATACGDDAIRIFK 79
H TIY + W LI T+C D +R+ +
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
+ H Q++ V+W+P +LA+ S D VKLW ++
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 102 HNQDVNCVAWNPVVPGMLASCSDDGDVKLW 131
H V V W P GM S S D +K+W
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 93 DLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
+V + +RAH V CVA +P + SCS+D + LW +
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 90 VSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
+S V + AH+ +VNCVA P + SC +DG + LW +
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 31 IPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMV 90
+P V K V + GH + DI+W D + + +D + E P+ G +
Sbjct: 62 LPLGKTGRVDKNVPLVXGHTA-PVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 91 SFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
++ E H + V VAW+P +L S D + +W +
Sbjct: 121 REPVITLE--GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 50 HGRTIYDISWCHLTDLIATACGDDAIRIFK 79
H TIY + W LI T+C D +R+ +
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 32.3 bits (72), Expect = 0.085, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 111 WNPVVPGMLASCSDDGDVKLWQI 133
WNP VP M+A C DG + + Q+
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQV 179
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 32.3 bits (72), Expect = 0.090, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 111 WNPVVPGMLASCSDDGDVKLWQI 133
WNP VP M+A C DG + + Q+
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQV 179
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 4 TGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKC-VCTLSGHHGRTIYDISWCHL 62
TG D V I KE K PTP D + V T++GH R Y S HL
Sbjct: 74 TGGHSDNEKDQLKVAI-KELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHL 132
Query: 63 TDLIATACGDDAIRIFKENPEAG 85
C +D KE+ +G
Sbjct: 133 NLTYLIECSEDETLXLKEDENSG 155
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 109 VAWNPVVPGMLASCSDDGDVKLWQI 133
+ WNP VP M+A C DG + + Q+
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQV 179
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 56 DISWCHLTDLIATACGDDAIRIFKENPEAGDS--DMVSFDLVHTEHRAHNQDVNCVAWNP 113
D+ W H +IA A + ++ ++ N EA ++ M F H+ V V +N
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTN-EANNAINSMARFS-------NHSSSVKTVKFNA 123
Query: 114 VVPGMLASCSDDGDVKLWQI 133
+LAS ++G++ +W +
Sbjct: 124 KQDNVLASGGNNGEIFIWDM 143
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 22 EYKPGNSAGIPTP---DNDS---VWKC------VCTLSGHHGRTIYDISWCHLTDLIATA 69
E+ P NS + T DND +W + TL+ H + I + WCH + + +
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 70 CGDDAIRIFKENPEAGD 86
G D + NPE+ +
Sbjct: 281 SGRDNT-VLLWNPESAE 296
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 46 LSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQD 105
L GHHG I + + L+ +A D +RI+ + G+S + H+Q
Sbjct: 243 LIGHHG-PISVLEFNDTNKLLLSASDDGTLRIW--HGGNGNSQNCFY--------GHSQS 291
Query: 106 VNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 138
+ +W V + SCS DG V+LW +K L
Sbjct: 292 IVSASW--VGDDKVISCSMDGSVRLWSLKQNTL 322
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.0 bits (66), Expect = 0.42, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 101 AHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H V CVA+NP P AS D VK+W +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 15/42 (35%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 49
+ T SDD T+KIW +Y+ + CV TL GH
Sbjct: 201 MITASDDLTIKIW-DYQTKS--------------CVATLEGH 227
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 101 AHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H V CVA+NP P AS D VK+W +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 11 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 70
C DD + G G P PD S+ L G+ + + C + + AC
Sbjct: 46 CLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAELKSALGKAVLFLKDC-VGPAVEKAC 104
Query: 71 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV--NCVAWNPV-VPGMLASCSDDGD 127
D P AG ++ H E +D N A P + AS S GD
Sbjct: 105 AD---------PAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGD 155
Query: 128 V 128
V
Sbjct: 156 V 156
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 34/133 (25%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G + + S D ++++W + + GN C+ TL+GH T S L D
Sbjct: 289 GIHVVSGSLDTSIRVW-DVETGN--------------CIHTLTGHQSLT----SGMELKD 329
Query: 65 -LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLAS 121
++ + D ++I+ D+ + + T H V C+ +N + +
Sbjct: 330 NILVSGNADSTVKIW---------DIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVIT 377
Query: 122 CSDDGDVKLWQIK 134
SDDG VKLW +K
Sbjct: 378 SSDDGTVKLWDLK 390
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 35/132 (26%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT- 63
G+R+ + SDD T+K+W KC+ TL GH G W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTG---------------KCLRTLVGHTGGV-----WSSQMR 168
Query: 64 -DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
++I + D ++++ N E G+ +HT + H V C+ + + S
Sbjct: 169 DNIIISGSTDRTLKVW--NAETGEC-------IHTLY-GHTSTVRCMHLH---EKRVVSG 215
Query: 123 SDDGDVKLWQIK 134
S D +++W I+
Sbjct: 216 SRDATLRVWDIE 227
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 15 ATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA 74
A +K W + + G + +PT D+ S+ TLS R+ + L D I T D
Sbjct: 15 AFIKYWGKREGGETLILPTNDSFSI-----TLSASPFRSKTSV---ELRDDIET----DT 62
Query: 75 IRIFKENPEAGDSDMVSFDLVHTE----HRAHNQDVNCVAWN--PVVPGMLASCS 123
+R+ + G + V L+H N+ VN V+ N P GM +S S
Sbjct: 63 LRLNGTEVDVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSAS 117
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H V CVA+NP P AS D VK+W +
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
H V CVA+NP P AS D VK+W +
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
MI +GSR D T+K+W +C+ TL GH+ W
Sbjct: 115 MIISGSR------DKTIKVWTIKG----------------QCLATLLGHN-------DWV 145
Query: 61 HLTDLIAT-ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPV 114
++ DD++ I AG+ MV +++L + + HN ++N + +P
Sbjct: 146 SQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
Query: 115 VPGMLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 202 -GTLIASAGKDGEIMLWNL 219
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
MI +GSR D T+K+W +C+ TL GH+ W
Sbjct: 121 MIISGSR------DKTIKVWTIKG----------------QCLATLLGHN-------DWV 151
Query: 61 HLTDLIAT-ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPV 114
++ DD++ I AG+ MV +++L + + HN ++N + +P
Sbjct: 152 SQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 115 VPGMLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 208 -GTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
MI +GSR D T+K+W +C+ TL GH+ W
Sbjct: 121 MIISGSR------DKTIKVWTIKG----------------QCLATLLGHN-------DWV 151
Query: 61 HLTDLIAT-ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPV 114
++ DD++ I AG+ MV +++L + + HN ++N + +P
Sbjct: 152 SQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 115 VPGMLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 208 -GTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
MI +GSR D T+K+W +C+ TL GH+ W
Sbjct: 121 MIISGSR------DKTIKVWTIKG----------------QCLATLLGHN-------DWV 151
Query: 61 HLTDLIAT-ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPV 114
++ DD++ I AG+ MV +++L + + HN ++N + +P
Sbjct: 152 SQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 115 VPGMLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 208 -GTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%)
Query: 1 MIQTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC 60
MI +GSR D T+K+W +C+ TL GH+ W
Sbjct: 121 MIISGSR------DKTIKVWTIKG----------------QCLATLLGHN-------DWV 151
Query: 61 HLTDLIAT-ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPV 114
++ DD++ I AG+ MV +++L + + HN ++N + +P
Sbjct: 152 SQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 115 VPGMLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 208 -GTLIASAGKDGEIMLWNL 225
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 69 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 125
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 126 GDVKLWQIKLENL 138
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 69 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 125
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 126 GDVKLWQIKLENL 138
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 69 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 125
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 126 GDVKLWQIKLENL 138
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 28.9 bits (63), Expect = 0.93, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 69 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 125
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 126 GDVKLWQIKLENL 138
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 95 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
+H ++ V + W+P P +A S GD+ LW ++N
Sbjct: 64 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 106
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 98 EHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
+ + H V +NP ++A+ S D VKLW ++
Sbjct: 198 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
R H + V VA NP LA+ S D VK+W ++
Sbjct: 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 103 NQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
++ +AW+P P +A S GD+ LW +++
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD 153
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 95 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
+H ++ V + W+P P +A S GD+ LW ++N
Sbjct: 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 107
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 98 EHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
+ + H V +NP ++A+ S D VKLW ++
Sbjct: 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
R H + V VA NP LA+ S D VK+W ++
Sbjct: 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 103 NQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
++ +AW+P P +A S GD+ LW +++
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD 153
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
R H + V VA NP LA+ S D VK+W ++
Sbjct: 248 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 103 NQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
++ +AW+P P +A S GD+ LW +++
Sbjct: 120 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD 154
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 104 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 147
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 148 SGSFDESVRIW---------DVKTGKCLKT-LPAHSDPVSAVHFNR-DGSLIVSSSYDGL 196
Query: 128 VKLW 131
++W
Sbjct: 197 CRIW 200
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 102 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 145
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 146 SGSFDESVRIW---------DVKTGKCLKT-LPAHSDPVSAVHFNR-DGSLIVSSSYDGL 194
Query: 128 VKLW 131
++W
Sbjct: 195 CRIW 198
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 83 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 126
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ V + AH+ V+ V +N ++ S S DG
Sbjct: 127 SGSFDESVRIWD----------VKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGL 175
Query: 128 VKLW 131
++W
Sbjct: 176 CRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 83 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 126
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ V + AH+ V+ V +N ++ S S DG
Sbjct: 127 SGSFDESVRIWD----------VKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGL 175
Query: 128 VKLW 131
++W
Sbjct: 176 CRIW 179
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 86 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 129
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 130 SGSFDESVRIW---------DVKTGKCLKT-LPAHSDPVSAVHFNR-DGSLIVSSSYDGL 178
Query: 128 VKLW 131
++W
Sbjct: 179 CRIW 182
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 83 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 126
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 127 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 175
Query: 128 VKLW 131
++W
Sbjct: 176 CRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 83 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 126
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 127 SGSFDESVRIW---------DVKTGKCLKT-LPAHSDPVSAVHFNR-DGSLIVSSSYDGL 175
Query: 128 VKLW 131
++W
Sbjct: 176 CRIW 179
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 97 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 140
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 141 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 189
Query: 128 VKLW 131
++W
Sbjct: 190 CRIW 193
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 86 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 129
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 130 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 178
Query: 128 VKLW 131
++W
Sbjct: 179 CRIW 182
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 85 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 128
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 129 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 177
Query: 128 VKLW 131
++W
Sbjct: 178 CRIW 181
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 86 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 129
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 130 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 178
Query: 128 VKLW 131
++W
Sbjct: 179 CRIW 182
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 83 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 126
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 127 SGSFDESVRIW---------DVKTGKCLKT-LPAHSDPVSAVHFNR-DGSLIVSSSYDGL 175
Query: 128 VKLW 131
++W
Sbjct: 176 CRIW 179
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 80 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 123
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 124 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 172
Query: 128 VKLW 131
++W
Sbjct: 173 CRIW 176
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 79 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 122
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 123 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 171
Query: 128 VKLW 131
++W
Sbjct: 172 CRIW 175
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 81 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 124
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 125 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 173
Query: 128 VKLW 131
++W
Sbjct: 174 CRIW 177
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 80 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 123
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 124 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 172
Query: 128 VKLW 131
++W
Sbjct: 173 CRIW 176
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 27/124 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L + SDD T+KIW + S KC+ TL G H ++ ++ ++LI
Sbjct: 76 LVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIV 119
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
+ D+++RI+ D+ + + T AH+ V+ V +N ++ S S DG
Sbjct: 120 SGSFDESVRIW---------DVKTGKCLKTL-PAHSDPVSAVHFNR-DGSLIVSSSYDGL 168
Query: 128 VKLW 131
++W
Sbjct: 169 CRIW 172
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
+ HN V +A P P M+ S S D + +W++
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 68
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
+ HN V +A P P M+ S S D + +W++
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 45
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 32/136 (23%)
Query: 3 QTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 62
+ S + + S D T+K+W +C+ TL GH+ W
Sbjct: 117 KKASXIISGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQ 153
Query: 63 TDLIAT-ACGDDAIRIFKENPEAGDSDMVSFDL----VHTEHRAHNQDVNCVAWNPVVPG 117
++ DD++ I D + +++L + + HN ++N + +P
Sbjct: 154 VRVVPNEKADDDSVTIISA---GNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPD-GT 209
Query: 118 MLASCSDDGDVKLWQI 133
++AS DG++ LW +
Sbjct: 210 LIASAGKDGEIXLWNL 225
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 30/126 (23%)
Query: 6 SRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDL 65
++ T S D T+K+W+ ND V K T SG H + ++
Sbjct: 156 NKFLTASADKTIKLWQ--------------NDKVIK---TFSGIHNDVVRHLAVVDDGHF 198
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDD 125
I +C +D + I + GD V + H V C+ P G + SC +D
Sbjct: 199 I--SCSNDGL-IKLVDXHTGD--------VLRTYEGHESFVYCIKLLP--NGDIVSCGED 245
Query: 126 GDVKLW 131
V++W
Sbjct: 246 RTVRIW 251
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 37/123 (30%)
Query: 14 DATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTI---YDISWCHLTDLIATAC 70
D T+KIW + + +C L+GH G + YD +I T
Sbjct: 152 DNTIKIW---------------DKNTLECKRILTGHTGSVLCLQYD------ERVIITGS 190
Query: 71 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 130
D +R++ N +M++ + H E H + N GM+ +CS D + +
Sbjct: 191 SDSTVRVWDVNT----GEMLNTLIHHCEAVLHLRFNN---------GMMVTCSKDRSIAV 237
Query: 131 WQI 133
W +
Sbjct: 238 WDM 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,052,662
Number of Sequences: 62578
Number of extensions: 201775
Number of successful extensions: 605
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 202
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)