RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14817
(138 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 63.5 bits (155), Expect = 7e-13
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
L++ S D T+K+W + T KC+ TL GH + +++ +A
Sbjct: 108 LSSSSRDKTIKVWD---------VETG------KCLTTLRGHTD-WVNSVAFSPDGTFVA 151
Query: 68 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 127
++ D I+++ D+ + V T H +VN VA++P L S S DG
Sbjct: 152 SSSQDGTIKLW---------DLRTGKCVAT-LTGHTGEVNSVAFSP-DGEKLLSSSSDGT 200
Query: 128 VKLWQIK 134
+KLW +
Sbjct: 201 IKLWDLS 207
Score = 61.6 bits (150), Expect = 3e-12
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G LAT S D T+K+W + G + + TL GH G + D++
Sbjct: 21 GKLLATGSGDGTIKVWD-LETG--------------ELLRTLKGHTG-PVRDVAASADGT 64
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
+A+ D IR++ D+ + + V T H V+ VA++P +L+S S
Sbjct: 65 YLASGSSDKTIRLW---------DLETGECVRT-LTGHTSYVSSVAFSP-DGRILSSSSR 113
Query: 125 DGDVKLWQI 133
D +K+W +
Sbjct: 114 DKTIKVWDV 122
Score = 60.0 bits (146), Expect = 9e-12
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 4 TGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 63
G +L + S D T+K+W + S KC+ TL G H + +++
Sbjct: 188 DGEKLLSSSSDGTIKLW---------------DLSTGKCLGTLRG-HENGVNSVAFSPDG 231
Query: 64 DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
L+A+ D IR++ D+ + + V T H V +AW+P LAS S
Sbjct: 232 YLLASGSEDGTIRVW---------DLRTGECVQT-LSGHTNSVTSLAWSP-DGKRLASGS 280
Query: 124 DDGDVKLWQ 132
DG +++W
Sbjct: 281 ADGTIRIWD 289
Score = 59.3 bits (144), Expect = 2e-11
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 3 QTGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 62
G+ +A+ S D T+K+W + KCV TL+GH G + +++
Sbjct: 145 PDGTFVASSSQDGTIKLW---------------DLRTGKCVATLTGHTG-EVNSVAFSPD 188
Query: 63 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
+ + ++ D I+++ D+ + + T R H VN VA++P +LAS
Sbjct: 189 GEKLLSSSSDGTIKLW---------DLSTGKCLGT-LRGHENGVNSVAFSP-DGYLLASG 237
Query: 123 SDDGDVKLWQIK 134
S+DG +++W ++
Sbjct: 238 SEDGTIRVWDLR 249
Score = 44.2 bits (105), Expect = 4e-06
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 42 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRA 101
TL GH G + +++ L+AT GD I+++ D+ + +L+ T +
Sbjct: 1 LRRTLKGHTGG-VTCVAFSPDGKLLATGSGDGTIKVW---------DLETGELLRTL-KG 49
Query: 102 HNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 138
H V VA + LAS S D ++LW ++
Sbjct: 50 HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC 85
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 50.1 bits (118), Expect = 5e-08
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
GS LA+ S D T+++W D S + TLSGH + +++
Sbjct: 253 GSLLASGSSDGTIRLW--------------DLRSSSSLLRTLSGHSSS-VLSVAFSPDGK 297
Query: 65 LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSD 124
L+A+ D +R++ L + H V+ ++++P +++ SD
Sbjct: 298 LLASGSSDGTVRLWDLET--------GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 125 DGDVKLWQIKLEN 137
DG ++LW ++
Sbjct: 350 DGTIRLWDLRTGK 362
Score = 45.5 bits (106), Expect = 2e-06
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIA 67
LA+ S D TVK+W D + K + TL GH + +++ L+A
Sbjct: 127 LASSSLDGTVKLW--------------DLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLA 171
Query: 68 TACGDD-AIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDG 126
+ D I+++ D+ + + T H V+ +A++P ++AS S DG
Sbjct: 172 SGSSLDGTIKLW---------DLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 127 DVKLWQIK 134
++LW +
Sbjct: 222 TIRLWDLS 229
Score = 42.4 bits (98), Expect = 2e-05
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 22/132 (16%)
Query: 4 TGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT 63
G L + S D T+K+W D D+ K + +L G H ++ ++
Sbjct: 76 DGELLLSGSSDGTIKLW--------------DLDNGEKLIKSLEGLHDSSVSKLALSSPD 121
Query: 64 -DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASC 122
+ I A + + + + + H++ V +A++P + +
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSLAFSPDGKLLASGS 174
Query: 123 SDDGDVKLWQIK 134
S DG +KLW ++
Sbjct: 175 SLDGTIKLWDLR 186
Score = 33.9 bits (76), Expect = 0.016
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 27/135 (20%)
Query: 5 GSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD 64
G LA+ S D TV++W TL GH + +S+
Sbjct: 296 GKLLASGSSDGTVRLWDL-------------ETGKLLSSLTLKGH-EGPVSSLSFSPDGS 341
Query: 65 LIATACGDDA-IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
L+ + DD IR++ D+ + + T N V V+++P +++S S
Sbjct: 342 LLVSGGSDDGTIRLW---------DLRTGKPLKTLEGHSN--VLSVSFSPDGR-VVSSGS 389
Query: 124 DDGDVKLWQIKLENL 138
DG V+LW + +L
Sbjct: 390 TDGTVRLWDLSTGSL 404
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 38.5 bits (90), Expect = 3e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 131
+ + H V VA++P +LAS SDDG V++W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVW 38
Score = 32.3 bits (74), Expect = 0.007
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 40 WKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 79
K + TL GH G + +++ +L+A+ D +R++
Sbjct: 1 GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.7 bits (62), Expect = 0.34
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 4 TGSRLATCSDDATVKIWK 21
G+ LA+ SDD TV++W
Sbjct: 22 DGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 36.9 bits (86), Expect = 1e-04
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 131
+ H V VA++P LAS SDDG +KLW
Sbjct: 9 KGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
Score = 33.4 bits (77), Expect = 0.002
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 40 WKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 79
+ + TL GH G + +++ +A+ D I+++
Sbjct: 2 GELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 27.3 bits (61), Expect = 0.44
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 3 QTGSRLATCSDDATVKIWK 21
G LA+ SDD T+K+W
Sbjct: 22 PDGKYLASGSDDGTIKLWD 40
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 33.5 bits (76), Expect = 0.023
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 97 TEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 133
TE + H + V + ++ P +LAS SDDG VKLW I
Sbjct: 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Score = 32.0 bits (72), Expect = 0.093
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 64 DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 123
+ ATA + I+IF+ D + + +V R+ ++ + WN + +AS +
Sbjct: 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS---KLSGICWNSYIKSQVASSN 552
Query: 124 DDGDVKLWQIKLENL 138
+G V++W + L
Sbjct: 553 FEGVVQVWDVARSQL 567
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 30.3 bits (68), Expect = 0.29
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 137
+ H + + +NP +LAS S+D +++W+I +
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHND 108
Score = 29.5 bits (66), Expect = 0.51
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 100 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLE 136
+ H + ++ + WNP+ ++ S D V +W I+ E
Sbjct: 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158
Score = 29.1 bits (65), Expect = 0.70
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 8 LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCV----CTLSGHHGRTIYDISWCHLT 63
LA+ S+D T+++W+ P ND K + C L GH + I I W +
Sbjct: 90 LASGSEDLTIRVWE-----------IPHNDESVKEIKDPQCILKGHK-KKISIIDWNPMN 137
Query: 64 DLIATACGDDA 74
I + G D+
Sbjct: 138 YYIMCSSGFDS 148
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 29.1 bits (65), Expect = 0.66
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 82 PEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 134
PE G + +S +VH + H + V V+++P +LAS D V +W ++
Sbjct: 106 PEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 29.1 bits (66), Expect = 0.76
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 17/61 (27%)
Query: 48 GHHGRTIYDISWCHLTDL---IATAC-------------GDDAIRI-FKENPEAGDSDMV 90
G + W D+ + +AC G+DAIR F++ G D +
Sbjct: 81 GETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGEDAIREWFQDAAGRGFLDDL 140
Query: 91 S 91
S
Sbjct: 141 S 141
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related
kinase 4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. YSK4 is a putative MAPKKK,
whose mammalian gene has been isolated. MAPKKKs (MKKKs
or MAP3Ks) phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals.
Length = 265
Score = 27.6 bits (61), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 8 LATCSDDATVKIWKEYKPGNS 28
L TC DD T+ I+ E+ PG S
Sbjct: 68 LGTCLDDNTISIFMEFVPGGS 88
>gnl|CDD|135493 PRK05645, PRK05645, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 295
Score = 27.6 bits (61), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 2 IQTGSRLATCSDDATVKIWKEYKPGNSAGIP 32
+Q G+R+A + + + + KE + G GIP
Sbjct: 158 VQLGNRVAPSTKEGILSVIKEVRKGGQVGIP 188
>gnl|CDD|205130 pfam12894, Apc4_WD40, Anaphase-promoting complex subunit 4 WD40
domain. Apc4 contains an N-terminal propeller-shaped
WD40 domain.The N-terminus of Afi1 serves to stabilise
the union between Apc4 and Apc5, both of which lie
towards the bottom-front of the APC,.
Length = 47
Score = 25.3 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 57 ISWCHLTDLIATACGDDAIRIFKEN 81
+SWC DLIA A D + + + N
Sbjct: 17 LSWCPTMDLIALATEDGELLLHRLN 41
>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 219
Score = 26.7 bits (59), Expect = 3.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 62 LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVH 96
L + + T G A +FKE+P+A FDL H
Sbjct: 18 LNEKLYTGKGSRAGDLFKEDPDA-------FDLYH 45
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 27.1 bits (60), Expect = 3.9
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 19 IWKEY-KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRI 77
W + K G+ D WK C + + R ++ I D + + CG+DA+R
Sbjct: 384 FWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKID---AADYMMSICGNDALR- 439
Query: 78 FKENPEAGDSDMVSFDLVHTEH 99
E G S V F L +
Sbjct: 440 --ELSSPGKSGSV-FFLSQDDR 458
>gnl|CDD|226071 COG3541, COG3541, Predicted nucleotidyltransferase [General
function prediction only].
Length = 248
Score = 26.6 bits (59), Expect = 4.3
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
Query: 30 GIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL---TDLIATACGDDAIRIFKENPEAGD 86
G P+PD+D YD+ H+ +D + D I E P G+
Sbjct: 22 GFPSPDSD-----------------YDVRGVHILPKSDYLGLEQPRDVI----EEPLDGE 60
Query: 87 SDMVSFDLVHTEHRAHNQDVNCVAW 111
D V ++L + NC+ W
Sbjct: 61 IDTVGWELRKFLLLLLKANANCLEW 85
>gnl|CDD|179807 PRK04280, PRK04280, arginine repressor; Provisional.
Length = 148
Score = 25.7 bits (57), Expect = 6.0
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 45 TLSGHH---GRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGD 86
TL G+ G I ++ W +++ T CGDD I E +
Sbjct: 97 TLPGNANSIGALIDNLDW---DEILGTICGDDTCLIICRTEEDAE 138
>gnl|CDD|149504 pfam08475, Baculo_VP91_N, Viral capsid protein 91 N-terminal.
This domain is found in Baculoviridae including the
nucleopolyhedrovirus at the N-terminus of the viral
capsid protein 91 (VP91).
Length = 185
Score = 26.1 bits (58), Expect = 6.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 14 DATVKIWKEYKPGNSAGIPTPDN 36
D + + EY +A P PD
Sbjct: 29 DNRLNVLTEYLKRTNADHPLPDV 51
>gnl|CDD|220581 pfam10116, Host_attach, Protein required for attachment to host
cells. Members of this family of bacterial proteins are
required for the attachment of the bacterium to host
cells.
Length = 138
Score = 25.7 bits (57), Expect = 7.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 76 RIFKENPEAGDSDMVSFDLVHTEHRAHNQDV 106
R+F+ + D + +L H E R ++D+
Sbjct: 12 RLFRNEGDEKDPLLEVEELEHPESRLPDRDL 42
>gnl|CDD|211379 cd09268, FCHo1_MHD, mu-homology domain (MHD) of F-BAR
domain-containing Fer/Cip4 homology domain-only protein
1 (FCH domain only 1 or FCHo1, also known as KIAA0290)
and similar proteins. This family corresponds to the
MHD found in ubiquitously expressed mammalian
membrane-sculpting FCHo1 and similar proteins. FCHo1
represents a key initial protein that ultimately
controls cellular nutrient uptake, receptor regulation,
and synaptic vesicle retrieval. It is required for
plasma membrane clathrin-coated vesicle (CCV) budding
and marks sites of CCV formation. It binds specifically
to the plasma membrane and recruits the scaffold
proteins eps15 and intersectin, which subsequently
engage the adaptor complex AP2 and clathrin, leading to
coated vesicle formation. FCHo1 contains an N-terminal
EFC/F-BAR domain, a proline-rich domain (PRD) in the
middle region, and a C-terminal MHD. The crescent-shaped
EFC/F-BAR domain can form an antiparallel dimer
structure that binds PtdIns(4,5)P2-enriched membranes
and can polymerize into rings to generate membrane
tubules. The MHD is structurally related to the
cargo-binding mu2 subunit of adaptor complex 2 (AP-2)
and is responsible for the binding of eps15 and
intersectin. Unlike other F-BAR domain containing
proteins, FCHo1 has neither the Src homology 3 (SH3)
domain nor any other known domain for interaction with
dynamin and actin cytoskeleton. However, it can
periodically accumulate at the budding site of clathrin.
FCHo1 may utilize a unique action mode for vesicle
formation as compared with other F-BAR proteins.
Length = 259
Score = 26.1 bits (57), Expect = 7.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 75 IRIFKENPEAGDSDMVSFDLVHT---EHRAHNQDV 106
+R+F P ++SF LVHT EH A N ++
Sbjct: 39 LRVFASTPTP---PVLSFRLVHTSHVEHFAPNSEL 70
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit
SFB2/subunit SFB3 [Intracellular trafficking and
secretion].
Length = 861
Score = 25.9 bits (57), Expect = 8.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 66 IATACGDDAIRIFKENPEAGDSDMVSFDL 94
IA C D ++ FK +P+ + ++ DL
Sbjct: 318 IAIICFDSSLHFFKLSPDLDEQMLIVSDL 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.447
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,948,736
Number of extensions: 578491
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 40
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)