BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1482
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUI|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Translation Initiation Factor Eif2b Epsilon Subunit
Length = 182
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 463 DDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAIL---VVK 519
DD +F EV+ +L RG EE + CDNL LEINS +YAYN+++KEV + +L + +
Sbjct: 9 DDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVXQVLSHVVLEFPLQQ 68
Query: 520 NKPDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLL 579
+D + ++ + + P+F+NYIK + + L A E+F E+E+L + K+L
Sbjct: 69 XDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISXAKVL 128
Query: 580 HKLYDKDILSEDIVTKWFNKLEPS----SLRKS--VEPFVKWL 616
Y +IL+ + + WF++ + + LRK+ ++ F++WL
Sbjct: 129 XAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWL 171
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 303 LAEDVLIGK------TSVLKQQVVIG-----EGSSIGENTQLSHCIIGRNCTIGSNVRLE 351
+A+ V++G S L QV IG +GSSIGENT+ H NC +GSNV
Sbjct: 319 VADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFG 378
Query: 352 KSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLS 403
+ N D +V+ N VG +S ++ LG L+G + ++
Sbjct: 379 AGTITVNY---DGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTIT 427
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL 350
V Y + R N L V IG +K GSSIGENT+ H NC +GSNV
Sbjct: 325 VGPYAHIRPNSSLGAQVHIGNFVEVK-------GSSIGENTKAGHLTYIGNCEVGSNVNF 377
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLS 403
+ N D +V+ N VG +S ++ LG L+G + ++
Sbjct: 378 GAGTITVNY---DGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTIT 427
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL 350
V Y + R N L V IG +K GSSIGENT+ H NC +GSNV
Sbjct: 334 VGPYAHIRPNSSLGAQVHIGNFVEVK-------GSSIGENTKAGHLTYIGNCEVGSNVNF 386
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLS 403
+ N D +V+ N VG +S ++ LG L+G + ++
Sbjct: 387 GAGTITVNY---DGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTIT 436
>pdb|1PAQ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Eukaryotic
Initiation Factor 2b Epsilon
Length = 189
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 473 VDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILV-VKNKPDMDMKSFHT 531
+ ++ R E D LE+N+ R + NVT EV + A+L V +
Sbjct: 27 IATVERAXENNHDLDTALLELNTLRXSXNVTYHEVRIATITALLRRVYHFIATQTLGPKD 86
Query: 532 HMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEEN--ESLSVVAGKLLHKLYDKDILS 589
++ N + LFK +E D + E E + ++ L LYD DI+
Sbjct: 87 AVVKVFNQWGLLFKRQAFDEEEYIDLXNIIXEKIVEQSFDKPDLILFSALVSLYDNDIIE 146
Query: 590 EDIVTKWFNKLEP----SSLRKSVEPFVKWL 616
ED++ KW++ + ++K +V+WL
Sbjct: 147 EDVIYKWWDNVSTDPRYDEVKKLTVKWVEWL 177
>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|B Chain B, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|C Chain C, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU9|A Chain A, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|B Chain B, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|C Chain C, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IUA|A Chain A, C. Trachomatis Lpxd
pdb|2IUA|B Chain B, C. Trachomatis Lpxd
pdb|2IUA|C Chain C, C. Trachomatis Lpxd
Length = 374
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGE------GSSIGENTQLSH---CIIGRN 341
V + Y + + E V IGK +++ VIG S+ G++ L H II +
Sbjct: 175 VGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDD 234
Query: 342 CTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC 401
IG+N +++ +V E + L +++ VG+HS ++ + IGN
Sbjct: 235 VEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVI 294
Query: 402 LSG 404
+ G
Sbjct: 295 IGG 297
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIG------------ 339
PS R + D+ I +++ V++G+ IG L +C+IG
Sbjct: 260 PSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLE 319
Query: 340 -----RNCTIGSNVRLE-KSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTG 393
NCT+G RL + L + + + E++ + L + G H L +G G
Sbjct: 320 DARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAG-HLSYLGDAEIGAG 378
Query: 394 VLIGNKT 400
V IG T
Sbjct: 379 VNIGAGT 385
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIG------------ 339
PS R + D+ I +++ V++G+ IG L +C+IG
Sbjct: 257 PSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLE 316
Query: 340 -----RNCTIGSNVRLE-KSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTG 393
NCT+G RL + L + + + E++ + L + G H L +G G
Sbjct: 317 DARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAG-HLSYLGDAEIGAG 375
Query: 394 VLIGNKT 400
V IG T
Sbjct: 376 VNIGAGT 382
>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase,
Product Of Bc4754 Gene [bacillus Cereus]
Length = 173
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT----QLSHCIIGRNCTIGSNVR 349
Y Y+ +A I + V +GE SSI NT +S IIG +
Sbjct: 6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCT 65
Query: 350 LEKSYLFDNVKIEDNCEVRLSVLSYNTG------VGEHSKLLNGCLLGTGVLIGNKTCLS 403
L +S + + +ED+ V V+ ++ +G S +L+G +G G IG + +S
Sbjct: 66 LHQSPQYPLI-LEDDVTVGHQVILHSCHIKKDALIGXGSIILDGAEIGEGAFIGAGSLVS 124
Query: 404 -GVKLP 408
G K+P
Sbjct: 125 QGKKIP 130
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain
Length = 208
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 578 LLHKLYDKDILSEDIVTKWFNKLE--------PSSLRKSVEPFVKWL 616
+L ++YD D+L E+++ W K +R EPF+KWL
Sbjct: 105 ILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 151
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLF 356
+ + + ED I + ++ V IG+GS IG N+ L + I+ IG++V +++S +
Sbjct: 242 KGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIM 301
Query: 357 DNVKIEDNCEVRLSVLSYNTGVGEHSKLLN------------------------GCLLGT 392
+ KI V SV++ + G + + N G +G
Sbjct: 302 EGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGG 361
Query: 393 GVLIG-NKTCLSGVKL 407
V G N T L GVK+
Sbjct: 362 HVRTGINVTILPGVKI 377
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 18 LQAVIVTDTFNRNFFPVP--EPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
++A I+ P+ P +P+++K L+EY +E+L GI +I V +S +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60
Query: 76 RELVKRKEKSLV 87
E K KE S+V
Sbjct: 61 FEK-KLKEISIV 71
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 306 DVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDN 364
+VLI ++V+ VIG+G S+G +C IG + +G+ +L S++F N ++ ++
Sbjct: 7 EVLIHPSAVVHPNAVIGKGVSVGP-----YCTIGSSVKLGNGCKLYPSSHVFGNTELGES 61
Query: 365 C 365
C
Sbjct: 62 C 62
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT----QLSHCIIGRNCTIGSNVR 349
Y Y+ +A I + VVIGE +SI NT ++ +IG I N
Sbjct: 4 YPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSI 63
Query: 350 LEKS-----YLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL-S 403
L +S + D V + + +++ N +G S +L+ +G G IG + +
Sbjct: 64 LHQSPNNPLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPP 123
Query: 404 GVKLP 408
G K+P
Sbjct: 124 GKKIP 128
>pdb|2JFO|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFO|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFP|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFP|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
Length = 293
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 8 AKSEIQKDEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVF 67
A EI A+ VT F P+ E V K ++ TL+ L L G++ +I+
Sbjct: 145 ASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILG 204
Query: 68 CTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLD 110
CT H +R ++ ++++G+ +TLI S G + G+V LD
Sbjct: 205 CT-HYPLLRPVI----QNVMGSHVTLIDS-GAETVGEVSMLLD 241
>pdb|2VVT|A Chain A, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
pdb|2VVT|B Chain B, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
Length = 290
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 8 AKSEIQKDEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVF 67
A EI A+ VT F P+ E V K ++ TL+ L L G++ +I+
Sbjct: 145 ASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILG 204
Query: 68 CTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLD 110
CT H +R ++ ++++G+ +TLI S G + G+V LD
Sbjct: 205 CT-HYPLLRPVI----QNVMGSHVTLIDS-GAETVGEVSMLLD 241
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCI-------IGRNCTIGSNVRLEKSY-LF 356
D LIG L Q++I IG++T ++ C+ IGR+C + V L +
Sbjct: 243 SDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEIC 302
Query: 357 DNVKIEDNCEVRLSVL---SYNTG 377
DNV + V S+ SY++G
Sbjct: 303 DNVFVTGMTMVTRSITEPGSYSSG 326
>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|D Chain D, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|E Chain E, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|F Chain F, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E79|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
Length = 357
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 331 TQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV-RLSVLSYNTGVGEHSKLLNGCL 389
QL +IG + IGSN +++ L DN +ED + L +++N +G ++ + C
Sbjct: 201 AQLGSVLIGNDVRIGSNCSIDRGAL-DNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCG 259
Query: 390 LGTGVLIGNKTCLSGV 405
+ IG L+G
Sbjct: 260 IAGSTKIGKNCILAGA 275
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 26/188 (13%)
Query: 18 LQAVIVTDTFNRNFFPVPEPYC--LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH-VNQ 74
++ +++ +P+ LLP+ +K ++ Y L L L+GI +I++ T +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 75 IRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIRNDFI------LVSGDVVS 128
R+L+ + S G + V + D ++ DFI LV GD V
Sbjct: 64 YRDLL--GDGSQFGVRFSYRVQEEPRGIADAF-------IVGKDFIGDSKVALVLGDNVF 114
Query: 129 NINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQD 188
+ S + ++ S++ GAV Y + + +V ++ + + + + + P
Sbjct: 115 YGHRFSEI--LRRAASLEDGAVIFGYYVRDPRPFG------VVEFDSEGRVISIEEKPSR 166
Query: 189 NQKKVNIP 196
+ +P
Sbjct: 167 PKSNYVVP 174
>pdb|3VBK|A Chain A, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBK|C Chain C, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBK|E Chain E, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWV---------HPFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + IASR IV + P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--IASRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR 349
S++ VVIGEG ++G + + + +G VR
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVR 183
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 16 EVLQAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVN 73
+V +AVI P + P +LPLV+K L++Y + +GI EI++ S N
Sbjct: 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKN 66
Query: 74 QIR 76
I
Sbjct: 67 SIE 69
>pdb|3R8Y|A Chain A, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|B Chain B, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|C Chain C, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|D Chain D, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|E Chain E, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|F Chain F, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
Length = 240
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRL 350
R+++ + ++ +I + + VIGEGS I N L +G+NC +G+ L
Sbjct: 101 RDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVL 154
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 287 VHPFVPSYKYRRNNIYLAEDVLIGKT------SVLK---QQVVIGEGSSIGENTQLSHCI 337
V P V S + N + DV IGK +VL+ ++ +GEG++I +NT +
Sbjct: 32 VSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDS 91
Query: 338 IGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLL-NGCLLGTGVLI 396
+ + IG V + S + + +N V + + + V E +L G LL G ++
Sbjct: 92 MHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIV 151
Query: 397 GNKTCLSG 404
+ +G
Sbjct: 152 KSGELWAG 159
>pdb|3VBP|A Chain A, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|C Chain C, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|E Chain E, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWVH---------PFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + I+SR IV ++ P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--ISSRTIVYAAINDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR 349
S++ VVIGEG ++G + + + +G VR
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVR 183
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-------K 352
N+ L + V IG VLK VVIG I + L I+G IG RL +
Sbjct: 283 NVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE 341
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+++ + V+I+ + + S +++ T VG+ S++ + C +G GV+ N
Sbjct: 342 THVGNFVEIKKSTVGKGSKVNHLTYVGD-SEIGSNCNIGAGVITCN 386
>pdb|3VBN|A Chain A, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBN|C Chain C, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBN|E Chain E, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWVH---------PFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + I+SR IV + P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--ISSRTIVYAAIADFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR 349
S++ VVIGEG ++G + + + +G VR
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVR 183
>pdb|3VBI|A Chain A, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBI|C Chain C, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBI|E Chain E, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBJ|A Chain A, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
pdb|3VBJ|C Chain C, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
pdb|3VBJ|E Chain E, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
Length = 205
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWV---------HPFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + I+SR IV + P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--ISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR 349
S++ VVIGEG ++G + + + +G VR
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVR 183
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIG-------------RNCTIGSN 347
Y+++D IG V+KQ I ++IG+++++ S+ I+G IG N
Sbjct: 30 YVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKN 89
Query: 348 VRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
+ + ++ + + R+ N + + + + CLLG +++ N L+G
Sbjct: 90 ATIREFATINSGTAKGDGFTRIG---DNAFIXAYCHIAHDCLLGNNIILANNATLAG 143
>pdb|3VBM|A Chain A, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|C Chain C, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|E Chain E, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWV---------HPFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + I SR IV + P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--ITSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR 349
S++ VVIGEG ++G + + + +G VR
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVR 183
>pdb|2F9C|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
pdb|2F9C|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
Length = 334
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 324 GSSIGENTQLSH-CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS 382
G+ I N +++ C + N IG NV ++++ + D +I DN ++ S + + +
Sbjct: 71 GTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDA 130
Query: 383 KLLN 386
++LN
Sbjct: 131 RVLN 134
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN-------------------VK 360
VIGEG I +N ++ H ++G I +E S L +
Sbjct: 332 VIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIG 390
Query: 361 IEDNCEVRLSVLSYNTGVGEHSKLLN 386
I NC ++ +++ N +G++ K++N
Sbjct: 391 IGKNCHIKRAIIDKNARIGDNVKIIN 416
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|B Chain B, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|C Chain C, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|D Chain D, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|E Chain E, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|F Chain F, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
Length = 177
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 506 EVNFYMVKAILVVKNKPD----MDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAF 561
+V Y A L V N P + F ++++I F + +++ +
Sbjct: 34 DVELYKKAAELDVLNDPKIGCVLAQCLFDEDIVNEIAEHNAFFTKILVTPEYEKNFMGGI 93
Query: 562 EEF-AEENESLSVVAGKLLHKLYDKDILSEDIV----TKWFNKLEPSS----LRKSVEPF 612
E F E++ L + K+L +LY+ DI+SE+ + TK K P +R++ +PF
Sbjct: 94 ERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPF 153
Query: 613 VKWL 616
+ WL
Sbjct: 154 ITWL 157
>pdb|2PIG|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
pdb|2PIG|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 324 GSSIGENTQLSH-CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS 382
G+ I N +++ C + N IG NV ++++ + D +I DN ++ S + + +
Sbjct: 71 GTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDA 130
Query: 383 KLLN 386
++LN
Sbjct: 131 RVLN 134
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
LLP+ +K ++ Y L L L+GI EI++ T
Sbjct: 37 LLPVYDKPMIYYPLSTLMLAGIREILIISTPQ 68
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
LLP+ +K ++ Y L L L+GI EI++ T
Sbjct: 36 LLPVYDKPMIYYPLSTLMLAGIREILIISTPQ 67
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
LLP+ +K ++ Y L L L+GI EI++ T
Sbjct: 27 LLPVYDKPMIYYPLSTLMLAGIREILIISTPQ 58
>pdb|3VBL|A Chain A, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|C Chain C, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|E Chain E, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 264 EYGISVKDWPSYQIASRDIVQRWV---------HPFVPS-YK-YRRNNIYLAEDVLIGKT 312
E GI + D+ + I SR IV + P +P+ YK + + L + V+IG
Sbjct: 89 EVGIEMYDFAN--ICSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAH 146
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKS 353
S++ VVIGEG ++G + + + +G VR K+
Sbjct: 147 SIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKA 187
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCI-IGRNCTIGSNV--------- 348
+ + L ++V+IG + + IG GS + N + H I IG+NC I S
Sbjct: 126 SGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGY 185
Query: 349 -----------RLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
++ + + D V+I + L +T +G + N C + V+IG
Sbjct: 186 ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALD-DTIIGNGVIIDNQCQIAHNVVIG 244
Query: 398 NKTCLSG 404
+ T ++G
Sbjct: 245 DNTAVAG 251
>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FS8|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FSB|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSB|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSC|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
pdb|3FSC|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
Length = 273
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Query: 242 KGVLINEEI-LDCRLYCSVVDDIEYGISVKDWPSYQ----IASRDIVQRWVHPFVPSYKY 296
+GV+I E + ++ +Y I+YG ++D + I +R I+ ++ F Y
Sbjct: 13 EGVIIGENVTIEDNVY------IDYGCIIRDNVHIKKGSFIGARSILGEYLVDF---YND 63
Query: 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCI-IGRNCTIGSNVRL 350
R N ++IG+ ++++ + VI + IG+N Q H + I N IG+NV++
Sbjct: 64 RINK---KHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKI 115
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 104 DVMRDLDGKAVIRND------FILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKK 157
++ +LDGK + ND ++ V+GDVVS +N+ S +++ D G + K
Sbjct: 460 EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS-------VHANDGGLYKCIAKSK 512
Query: 158 KGQSKSSWK 166
G ++ S K
Sbjct: 513 VGVAEHSAK 521
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 281 DIVQRW----VHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS 334
DIV +W V V +K ++ + +++ G+T+V QV++G S +N QL+
Sbjct: 37 DIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLT 94
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGV 378
++IGE ++G L C IG +G S + D IED+ + L V
Sbjct: 84 LIIGEDVTVGHKVMLHGCTIGNRVLVGMG-----SIVLDGAIIEDDVMIGAGSL-----V 133
Query: 379 GEHSKLLNGCL-LGTGV 394
+H +L +G L LG+ V
Sbjct: 134 PQHKRLESGYLYLGSPV 150
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 27 FNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIV------------FCTSHV 72
+ F P+ + P +LP+V+K L++Y +E +G E + + F TS+
Sbjct: 12 YGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSY- 70
Query: 73 NQIRELVKRKEKSLVGTLITLIVSDGCYSF---------------GDVMRDLDGKAVIRN 117
+I ++ K I I+ C+S+ G+ + + AVI
Sbjct: 71 -EIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILA 129
Query: 118 DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKED 168
D + +S D S + +++L + + + VAL K G + W E+
Sbjct: 130 DDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEE 180
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDN 358
+I K++ + ++ EG+SIG N + CI+G + IG L KS++ N
Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL-KSHVVVN 51
>pdb|3JQY|B Chain B, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
pdb|3JQY|A Chain A, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
pdb|3JQY|C Chain C, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
Length = 252
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 281 DIVQRWVHP-FVPSYKYRR--NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGEN----TQL 333
D+ RW+ F Y R N + D++ K S +V+IG ++IG T
Sbjct: 69 DVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGS----KVIIGRRTTIGAGFEVVTDK 124
Query: 334 SHCIIGRNCTIGSNVRLEKSY---LFD-NVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCL 389
+ IG +C I +V L S +FD + K N + + SY VG + ++ G
Sbjct: 125 CNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSY-VWVGRNVSIMKGVS 183
Query: 390 LGTGVLIG 397
+G+G +IG
Sbjct: 184 VGSGSVIG 191
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDN 358
+I K++ + ++ EG+SIG N + CI+G + IG L KS++ N
Sbjct: 3 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL-KSHVVVN 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,925,386
Number of Sequences: 62578
Number of extensions: 745143
Number of successful extensions: 1776
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 110
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)