Query psy1482
Match_columns 627
No_of_seqs 458 out of 3321
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:38:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1461|consensus 100.0 2E-119 4E-124 933.2 55.2 619 1-627 1-673 (673)
2 COG1208 GCD1 Nucleoside-diphos 100.0 2.5E-49 5.5E-54 413.1 34.6 312 17-363 1-324 (358)
3 PLN02241 glucose-1-phosphate a 100.0 5.7E-48 1.2E-52 416.3 30.4 372 16-407 2-435 (436)
4 KOG1462|consensus 100.0 4.5E-48 9.7E-53 380.7 21.0 378 14-409 6-424 (433)
5 KOG1322|consensus 100.0 2.1E-47 4.7E-52 369.1 24.1 340 16-408 8-355 (371)
6 PRK02862 glgC glucose-1-phosph 100.0 3E-46 6.5E-51 401.7 30.7 369 17-408 3-429 (429)
7 PRK05293 glgC glucose-1-phosph 100.0 3.1E-46 6.7E-51 397.9 29.9 351 16-402 2-379 (380)
8 PRK00844 glgC glucose-1-phosph 100.0 2.5E-44 5.5E-49 385.1 29.5 337 15-386 3-382 (407)
9 TIGR01208 rmlA_long glucose-1- 100.0 1.9E-43 4.1E-48 372.6 32.8 341 19-397 1-352 (353)
10 KOG1460|consensus 100.0 2.1E-44 4.5E-49 341.9 20.6 322 17-369 2-357 (407)
11 TIGR02092 glgD glucose-1-phosp 100.0 2.2E-44 4.8E-49 382.0 23.5 334 16-385 1-354 (369)
12 PRK00725 glgC glucose-1-phosph 100.0 5.8E-43 1.3E-47 375.8 30.3 343 16-389 14-397 (425)
13 COG0448 GlgC ADP-glucose pyrop 100.0 6.9E-43 1.5E-47 351.5 24.3 337 17-387 5-363 (393)
14 TIGR02091 glgC glucose-1-phosp 100.0 1.4E-41 2.9E-46 359.9 27.0 337 20-385 1-360 (361)
15 PRK14358 glmU bifunctional N-a 100.0 2.9E-40 6.2E-45 360.5 29.1 334 15-384 5-355 (481)
16 PRK14355 glmU bifunctional N-a 100.0 1E-39 2.2E-44 356.0 31.7 327 17-378 3-347 (459)
17 COG1207 GlmU N-acetylglucosami 100.0 2.4E-39 5.3E-44 324.8 26.9 358 17-409 2-388 (460)
18 PRK14352 glmU bifunctional N-a 100.0 9.4E-39 2E-43 350.1 30.9 330 16-380 3-351 (482)
19 TIGR01173 glmU UDP-N-acetylglu 100.0 1.9E-38 4.2E-43 346.3 30.4 336 18-392 1-353 (451)
20 PRK09451 glmU bifunctional N-a 100.0 2.5E-38 5.3E-43 345.0 28.4 322 17-376 5-342 (456)
21 PRK14356 glmU bifunctional N-a 100.0 4.7E-38 1E-42 343.3 28.2 343 17-395 5-364 (456)
22 PRK14353 glmU bifunctional N-a 100.0 1.7E-37 3.7E-42 338.0 32.4 320 15-369 3-338 (446)
23 PRK14359 glmU bifunctional N-a 100.0 1.9E-37 4.1E-42 336.2 31.6 328 17-384 2-357 (430)
24 PRK14354 glmU bifunctional N-a 100.0 1.3E-35 2.9E-40 324.3 31.9 315 17-367 2-331 (458)
25 PRK14357 glmU bifunctional N-a 100.0 1.8E-35 3.9E-40 322.2 30.8 306 18-367 1-339 (448)
26 COG1209 RfbA dTDP-glucose pyro 100.0 2.6E-36 5.6E-41 287.7 17.4 278 18-347 1-284 (286)
27 PRK14360 glmU bifunctional N-a 100.0 2.1E-34 4.5E-39 314.2 30.1 313 18-367 2-346 (450)
28 cd04197 eIF-2B_epsilon_N The N 100.0 5.9E-35 1.3E-39 286.5 22.7 208 18-225 1-217 (217)
29 cd04198 eIF-2B_gamma_N The N-t 100.0 9.6E-33 2.1E-37 270.0 18.2 201 18-225 1-214 (214)
30 TIGR01105 galF UTP-glucose-1-p 100.0 2.7E-32 5.9E-37 277.5 20.8 236 17-282 3-276 (297)
31 cd02507 eIF-2B_gamma_N_like Th 100.0 5.2E-31 1.1E-35 258.0 20.9 203 18-225 1-216 (216)
32 PRK10122 GalU regulator GalF; 100.0 5.3E-31 1.1E-35 268.8 21.4 237 16-282 2-276 (297)
33 PF00483 NTP_transferase: Nucl 100.0 2E-31 4.4E-36 267.3 18.2 236 19-284 1-247 (248)
34 cd06428 M1P_guanylylT_A_like_N 100.0 8.2E-31 1.8E-35 264.1 19.4 229 20-281 1-256 (257)
35 cd06425 M1P_guanylylT_B_like_N 100.0 8.9E-31 1.9E-35 260.0 19.4 228 18-283 1-233 (233)
36 PRK15480 glucose-1-phosphate t 100.0 3.4E-30 7.4E-35 261.4 20.7 233 16-283 2-241 (292)
37 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.1E-29 2.5E-34 253.2 19.2 230 18-282 1-237 (240)
38 TIGR01207 rmlA glucose-1-phosp 100.0 1.5E-29 3.3E-34 256.5 18.3 229 19-282 1-236 (286)
39 cd04189 G1P_TT_long G1P_TT_lon 100.0 8.2E-29 1.8E-33 246.5 20.2 231 18-284 1-235 (236)
40 TIGR02623 G1P_cyt_trans glucos 100.0 8.5E-29 1.8E-33 248.3 20.2 224 19-284 1-246 (254)
41 PRK13389 UTP--glucose-1-phosph 100.0 8E-29 1.7E-33 253.1 19.9 236 16-282 7-279 (302)
42 cd06422 NTP_transferase_like_1 100.0 1.4E-28 3E-33 242.3 17.7 217 19-278 1-221 (221)
43 cd02541 UGPase_prokaryotic Pro 100.0 4.8E-28 1E-32 245.5 19.9 234 18-283 1-265 (267)
44 cd06426 NTP_transferase_like_2 100.0 1E-27 2.2E-32 236.0 19.4 217 20-279 1-220 (220)
45 cd02524 G1P_cytidylyltransfera 100.0 9.6E-28 2.1E-32 241.1 18.9 222 20-282 1-245 (253)
46 TIGR01099 galU UTP-glucose-1-p 100.0 1.3E-27 2.8E-32 241.4 19.5 229 18-278 1-260 (260)
47 cd04181 NTP_transferase NTP_tr 100.0 2.1E-27 4.5E-32 233.2 18.0 213 20-270 1-217 (217)
48 cd06915 NTP_transferase_WcbM_l 99.9 1E-26 2.2E-31 229.3 19.9 218 20-278 1-222 (223)
49 COG1210 GalU UDP-glucose pyrop 99.9 5.1E-25 1.1E-29 210.6 17.6 239 16-285 3-272 (291)
50 KOG2297|consensus 99.9 5.4E-25 1.2E-29 210.9 12.1 155 468-624 253-412 (412)
51 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 1.3E-23 2.9E-28 208.3 18.1 218 20-275 1-230 (231)
52 cd02508 ADP_Glucose_PP ADP-glu 99.9 7.3E-24 1.6E-28 205.2 12.4 183 20-269 1-200 (200)
53 cd02523 PC_cytidylyltransferas 99.9 2.7E-23 5.8E-28 205.8 14.0 220 20-278 1-228 (229)
54 cd02509 GDP-M1P_Guanylyltransf 99.9 1.6E-22 3.5E-27 204.7 12.5 185 18-225 1-202 (274)
55 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.1E-21 2.5E-26 194.1 15.9 221 20-274 1-228 (229)
56 COG1213 Predicted sugar nucleo 99.9 9.7E-21 2.1E-25 178.3 17.0 222 16-286 2-232 (239)
57 PF02020 W2: eIF4-gamma/eIF5/e 99.8 1.8E-21 4E-26 159.1 7.4 76 552-627 2-84 (84)
58 TIGR01479 GMP_PMI mannose-1-ph 99.8 2.3E-20 5E-25 202.2 15.3 233 18-279 1-281 (468)
59 PRK05450 3-deoxy-manno-octulos 99.8 5.5E-19 1.2E-23 176.8 18.5 229 18-282 3-244 (245)
60 cd02517 CMP-KDO-Synthetase CMP 99.8 1.2E-18 2.7E-23 173.6 17.9 227 18-280 2-238 (239)
61 smart00515 eIF5C Domain at the 99.8 1.2E-19 2.5E-24 148.4 8.1 79 541-619 1-83 (83)
62 PRK13368 3-deoxy-manno-octulos 99.7 6.2E-17 1.3E-21 161.2 18.0 220 18-280 3-236 (238)
63 COG4750 LicC CTP:phosphocholin 99.7 7.2E-17 1.6E-21 145.4 9.7 218 18-282 1-225 (231)
64 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 1.8E-16 4E-21 155.1 13.0 140 257-402 42-193 (231)
65 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.8E-15 3.8E-20 141.3 15.6 118 293-410 10-152 (163)
66 KOG2767|consensus 99.7 7.9E-16 1.7E-20 150.0 13.2 97 531-627 291-397 (400)
67 PRK15460 cpsB mannose-1-phosph 99.7 1.2E-15 2.5E-20 163.8 15.3 189 17-225 5-213 (478)
68 COG0836 {ManC} Mannose-1-phosp 99.6 3.5E-15 7.5E-20 146.7 13.5 189 17-225 1-206 (333)
69 cd05636 LbH_G1P_TT_C_like Puta 99.6 7.7E-15 1.7E-19 137.0 15.0 115 294-408 29-162 (163)
70 TIGR02287 PaaY phenylacetic ac 99.6 3.9E-15 8.5E-20 141.3 13.0 108 302-409 10-126 (192)
71 cd04745 LbH_paaY_like paaY-lik 99.6 1.1E-14 2.4E-19 134.6 14.6 107 303-409 3-118 (155)
72 PRK13627 carnitine operon prot 99.6 1.7E-14 3.7E-19 137.5 14.6 107 302-408 12-127 (196)
73 COG0663 PaaY Carbonic anhydras 99.6 1.2E-14 2.7E-19 131.9 12.8 108 302-409 13-129 (176)
74 cd04646 LbH_Dynactin_6 Dynacti 99.6 2.1E-14 4.5E-19 133.7 14.3 107 303-409 2-123 (164)
75 PLN02472 uncharacterized prote 99.6 2.7E-14 5.8E-19 140.3 14.5 109 302-410 61-184 (246)
76 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 2.7E-14 5.9E-19 143.1 14.1 115 294-408 23-159 (254)
77 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 5.9E-14 1.3E-18 134.9 15.5 92 291-382 6-98 (193)
78 PLN02296 carbonate dehydratase 99.6 3.5E-14 7.6E-19 141.3 13.8 108 302-409 54-176 (269)
79 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 1E-13 2.3E-18 142.8 17.7 103 265-367 66-172 (324)
80 TIGR01852 lipid_A_lpxA acyl-[a 99.6 4.8E-14 1E-18 141.3 14.8 116 294-409 22-159 (254)
81 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 9.9E-14 2.1E-18 139.1 14.9 108 294-401 5-134 (254)
82 PLN02917 CMP-KDO synthetase 99.5 3E-13 6.4E-18 137.7 18.6 230 17-283 47-288 (293)
83 PRK11132 cysE serine acetyltra 99.5 7.2E-15 1.6E-19 145.4 6.4 154 237-402 37-226 (273)
84 cd04650 LbH_FBP Ferripyochelin 99.5 1.2E-13 2.7E-18 127.1 14.2 107 303-409 3-118 (154)
85 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.3E-13 2.9E-18 137.1 15.3 54 297-350 120-180 (338)
86 cd04645 LbH_gamma_CA_like Gamm 99.5 1.5E-13 3.2E-18 126.9 14.1 107 303-409 2-117 (153)
87 PRK05289 UDP-N-acetylglucosami 99.5 1.1E-13 2.4E-18 139.0 13.1 102 296-397 28-151 (262)
88 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.7E-13 3.7E-18 136.3 13.8 142 267-408 76-251 (338)
89 PRK05289 UDP-N-acetylglucosami 99.5 1.8E-13 3.9E-18 137.4 14.2 109 294-402 8-138 (262)
90 TIGR01852 lipid_A_lpxA acyl-[a 99.5 3.2E-13 7E-18 135.3 15.9 115 294-408 4-140 (254)
91 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 6.2E-13 1.4E-17 139.1 17.3 74 294-367 106-181 (343)
92 PRK12461 UDP-N-acetylglucosami 99.5 3.5E-13 7.7E-18 134.0 14.5 54 297-350 8-62 (255)
93 TIGR03308 phn_thr-fam phosphon 99.5 3.6E-13 7.8E-18 129.6 13.7 108 302-410 4-143 (204)
94 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 3.7E-13 8E-18 138.8 14.2 107 294-400 115-248 (324)
95 KOG1461|consensus 99.5 9E-14 1.9E-18 146.6 9.0 96 296-392 329-425 (673)
96 PRK12461 UDP-N-acetylglucosami 99.5 5.1E-13 1.1E-17 132.9 13.5 58 294-351 23-93 (255)
97 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.3E-12 2.9E-17 121.5 14.4 103 307-409 8-129 (161)
98 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 5.5E-13 1.2E-17 108.9 10.4 78 321-399 2-79 (81)
99 TIGR00454 conserved hypothetic 99.4 1.1E-12 2.3E-17 124.4 13.1 115 18-142 1-117 (183)
100 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 9.8E-13 2.1E-17 137.7 14.1 104 296-399 126-255 (343)
101 cd05787 LbH_eIF2B_epsilon eIF- 99.4 7.5E-13 1.6E-17 107.5 10.1 79 320-398 1-79 (79)
102 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 1.4E-12 3E-17 127.7 13.4 51 299-350 105-156 (269)
103 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 1.9E-12 4.1E-17 128.2 14.0 56 294-350 103-159 (272)
104 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 1.5E-12 3.2E-17 127.5 13.1 54 296-350 108-162 (269)
105 cd03356 LbH_G1P_AT_C_like Left 99.4 1E-12 2.2E-17 106.8 10.1 77 321-397 2-78 (79)
106 cd04745 LbH_paaY_like paaY-lik 99.4 3E-12 6.6E-17 118.3 14.5 90 295-384 13-111 (155)
107 cd03350 LbH_THP_succinylT 2,3, 99.4 2.5E-12 5.4E-17 116.6 13.4 36 298-333 5-40 (139)
108 cd04646 LbH_Dynactin_6 Dynacti 99.4 2.7E-12 5.8E-17 119.5 13.7 108 294-406 11-132 (164)
109 TIGR01173 glmU UDP-N-acetylglu 99.4 1.3E-12 2.9E-17 142.7 13.0 79 294-373 273-352 (451)
110 cd00710 LbH_gamma_CA Gamma car 99.4 4.1E-12 8.8E-17 118.9 14.2 100 302-402 4-114 (167)
111 cd00710 LbH_gamma_CA Gamma car 99.4 5.6E-12 1.2E-16 118.0 15.1 112 295-407 15-136 (167)
112 cd03350 LbH_THP_succinylT 2,3, 99.4 3.4E-12 7.4E-17 115.7 13.2 55 296-350 9-64 (139)
113 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 1.9E-12 4.1E-17 105.7 10.3 79 303-382 2-80 (81)
114 TIGR00466 kdsB 3-deoxy-D-manno 99.4 8.6E-12 1.9E-16 123.7 17.0 229 20-275 2-237 (238)
115 cd04650 LbH_FBP Ferripyochelin 99.4 6.3E-12 1.4E-16 115.8 14.8 100 295-394 13-121 (154)
116 PLN02472 uncharacterized prote 99.4 4.4E-12 9.6E-17 124.7 13.2 104 294-408 71-188 (246)
117 TIGR02287 PaaY phenylacetic ac 99.4 5.6E-12 1.2E-16 119.8 13.4 89 294-382 20-117 (192)
118 cd03358 LbH_WxcM_N_like WcxM-l 99.4 3.4E-12 7.4E-17 112.5 11.1 101 303-404 1-102 (119)
119 PLN02296 carbonate dehydratase 99.4 5.8E-12 1.2E-16 125.6 13.7 100 296-400 66-179 (269)
120 cd03359 LbH_Dynactin_5 Dynacti 99.4 1.1E-11 2.3E-16 115.4 13.8 100 298-402 19-134 (161)
121 PF12804 NTP_transf_3: MobA-li 99.4 3.4E-12 7.4E-17 118.8 10.3 109 20-142 1-114 (160)
122 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 5E-12 1.1E-16 125.2 11.8 40 370-409 177-216 (272)
123 cd05824 LbH_M1P_guanylylT_C Ma 99.3 8.1E-12 1.8E-16 101.7 10.6 74 304-377 3-77 (80)
124 cd03356 LbH_G1P_AT_C_like Left 99.3 6.8E-12 1.5E-16 101.9 10.1 78 302-380 1-79 (79)
125 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 1.7E-11 3.7E-16 119.1 14.5 53 298-350 17-70 (205)
126 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 1.8E-11 4E-16 117.6 14.1 77 295-372 28-105 (193)
127 cd05824 LbH_M1P_guanylylT_C Ma 99.3 9.6E-12 2.1E-16 101.2 9.7 78 321-398 2-80 (80)
128 PRK14356 glmU bifunctional N-a 99.3 1.1E-11 2.3E-16 135.7 12.9 77 297-374 284-361 (456)
129 cd03360 LbH_AT_putative Putati 99.3 6.3E-11 1.4E-15 113.8 16.1 66 337-402 116-183 (197)
130 cd04651 LbH_G1P_AT_C Glucose-1 99.3 1.8E-11 3.9E-16 104.9 10.7 78 308-387 3-80 (104)
131 COG1043 LpxA Acyl-[acyl carrie 99.3 9.7E-12 2.1E-16 116.9 9.6 71 297-367 12-96 (260)
132 cd04645 LbH_gamma_CA_like Gamm 99.3 4.6E-11 9.9E-16 110.3 14.0 91 295-385 12-111 (153)
133 cd05635 LbH_unknown Uncharacte 99.3 3.6E-11 7.7E-16 102.1 11.9 86 298-385 9-95 (101)
134 cd04651 LbH_G1P_AT_C Glucose-1 99.3 2.3E-11 4.9E-16 104.3 10.7 80 325-406 2-81 (104)
135 COG0663 PaaY Carbonic anhydras 99.3 3.8E-11 8.2E-16 109.3 12.5 103 295-408 24-134 (176)
136 PRK13627 carnitine operon prot 99.3 4.6E-11 9.9E-16 114.0 13.4 96 296-396 24-127 (196)
137 PRK14353 glmU bifunctional N-a 99.3 2.7E-11 5.9E-16 132.2 13.2 87 296-382 276-368 (446)
138 PRK14358 glmU bifunctional N-a 99.3 2.6E-11 5.7E-16 132.9 13.0 73 294-367 282-355 (481)
139 TIGR03570 NeuD_NnaD sugar O-ac 99.3 6.1E-11 1.3E-15 114.7 13.8 82 321-402 102-186 (201)
140 TIGR03570 NeuD_NnaD sugar O-ac 99.3 1.7E-10 3.6E-15 111.6 16.9 133 265-408 62-196 (201)
141 cd03360 LbH_AT_putative Putati 99.3 6.3E-11 1.4E-15 113.8 13.5 98 296-398 86-185 (197)
142 PRK14359 glmU bifunctional N-a 99.2 3.8E-11 8.3E-16 130.4 12.7 84 318-401 298-399 (430)
143 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 1.1E-10 2.3E-15 113.5 14.3 84 297-380 34-143 (205)
144 COG2266 GTP:adenosylcobinamide 99.2 4E-11 8.7E-16 108.2 10.1 109 18-139 1-111 (177)
145 cd04649 LbH_THP_succinylT_puta 99.2 1.2E-10 2.6E-15 103.2 12.7 39 370-410 74-112 (147)
146 cd05787 LbH_eIF2B_epsilon eIF- 99.2 6.2E-11 1.3E-15 96.2 9.6 77 302-379 1-78 (79)
147 cd02513 CMP-NeuAc_Synthase CMP 99.2 1.8E-10 3.9E-15 113.4 14.9 206 18-280 2-221 (223)
148 COG1207 GlmU N-acetylglucosami 99.2 3.4E-11 7.3E-16 122.6 9.5 79 296-375 282-361 (460)
149 PRK14360 glmU bifunctional N-a 99.2 6.3E-11 1.4E-15 129.5 11.8 92 319-410 314-425 (450)
150 PRK14355 glmU bifunctional N-a 99.2 9.5E-11 2.1E-15 128.2 12.9 86 314-399 264-350 (459)
151 TIGR03308 phn_thr-fam phosphon 99.2 1.2E-10 2.7E-15 112.1 12.0 110 300-410 19-153 (204)
152 TIGR00453 ispD 2-C-methyl-D-er 99.2 2.1E-10 4.5E-15 112.5 13.2 205 20-280 2-215 (217)
153 PRK14352 glmU bifunctional N-a 99.2 1.4E-10 3.1E-15 127.5 13.3 47 335-381 340-386 (482)
154 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.2 1.5E-10 3.2E-15 113.6 11.7 108 294-409 92-204 (231)
155 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.9E-10 4.2E-15 113.4 12.4 39 370-410 251-289 (341)
156 TIGR03310 matur_ygfJ molybdenu 99.2 2.5E-10 5.4E-15 109.2 12.9 112 20-142 2-118 (188)
157 cd04649 LbH_THP_succinylT_puta 99.2 3.6E-10 7.7E-15 100.2 12.7 98 308-410 3-106 (147)
158 cd04182 GT_2_like_f GT_2_like_ 99.2 1.9E-10 4E-15 109.7 11.9 112 18-141 1-118 (186)
159 KOG1462|consensus 99.2 6.8E-11 1.5E-15 118.3 9.0 90 295-385 329-418 (433)
160 PRK09451 glmU bifunctional N-a 99.2 1.1E-10 2.3E-15 127.8 11.4 72 295-367 278-350 (456)
161 COG1043 LpxA Acyl-[acyl carrie 99.2 1.2E-10 2.5E-15 109.8 9.6 59 294-352 27-98 (260)
162 PRK14357 glmU bifunctional N-a 99.2 1.4E-10 3.1E-15 126.6 11.5 61 320-380 308-369 (448)
163 COG1208 GCD1 Nucleoside-diphos 99.2 1.8E-10 3.9E-15 120.9 11.6 91 313-410 256-347 (358)
164 cd02516 CDP-ME_synthetase CDP- 99.1 3.9E-10 8.4E-15 110.6 12.2 206 19-276 2-216 (218)
165 cd05635 LbH_unknown Uncharacte 99.1 6.8E-10 1.5E-14 94.2 11.7 84 317-403 10-95 (101)
166 PRK09677 putative lipopolysacc 99.1 9.3E-10 2E-14 105.3 14.1 109 295-403 38-164 (192)
167 PRK00155 ispD 2-C-methyl-D-ery 99.1 6.6E-10 1.4E-14 109.7 13.5 212 17-281 3-221 (227)
168 PRK14354 glmU bifunctional N-a 99.1 4.9E-10 1.1E-14 122.8 12.8 61 320-380 318-379 (458)
169 TIGR03535 DapD_actino 2,3,4,5- 99.1 9.4E-10 2E-14 108.2 12.2 102 304-410 151-264 (319)
170 cd03358 LbH_WxcM_N_like WcxM-l 99.1 7.4E-10 1.6E-14 97.6 10.4 33 376-408 68-100 (119)
171 COG2171 DapD Tetrahydrodipicol 99.1 4.9E-10 1.1E-14 107.8 9.7 104 307-410 109-223 (271)
172 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 1.6E-09 3.6E-14 106.9 12.2 98 305-410 177-283 (341)
173 PRK10502 putative acyl transfe 99.0 1.5E-09 3.2E-14 102.9 11.2 51 300-350 51-106 (182)
174 PRK10502 putative acyl transfe 99.0 1.8E-09 3.9E-14 102.4 11.3 92 319-410 52-159 (182)
175 PRK09527 lacA galactoside O-ac 99.0 3E-09 6.6E-14 101.7 12.2 49 303-351 58-111 (203)
176 PRK05293 glgC glucose-1-phosph 99.0 1.4E-09 3.1E-14 116.1 10.5 78 306-383 293-378 (380)
177 PRK09382 ispDF bifunctional 2- 99.0 7.2E-09 1.6E-13 108.9 14.9 203 17-281 5-211 (378)
178 PRK09527 lacA galactoside O-ac 99.0 5E-09 1.1E-13 100.2 11.6 74 336-409 76-165 (203)
179 PLN02694 serine O-acetyltransf 98.9 3.4E-09 7.3E-14 105.1 9.9 33 301-333 161-195 (294)
180 KOG3121|consensus 98.9 2E-09 4.4E-14 92.4 7.1 107 299-409 32-141 (184)
181 PRK09677 putative lipopolysacc 98.9 6.7E-09 1.5E-13 99.3 11.6 93 318-410 43-165 (192)
182 cd03357 LbH_MAT_GAT Maltose O- 98.9 9.1E-09 2E-13 96.5 11.8 36 316-351 60-98 (169)
183 PRK13385 2-C-methyl-D-erythrit 98.9 1.4E-08 3E-13 100.5 13.7 117 18-141 3-125 (230)
184 PRK10092 maltose O-acetyltrans 98.9 9.9E-09 2.1E-13 96.9 12.0 36 316-351 71-109 (183)
185 COG1212 KdsB CMP-2-keto-3-deox 98.9 4.5E-08 9.7E-13 91.9 15.9 229 18-282 4-242 (247)
186 TIGR03584 PseF pseudaminic aci 98.9 3.1E-08 6.7E-13 97.1 15.5 207 20-280 2-218 (222)
187 PLN02241 glucose-1-phosphate a 98.9 5E-09 1.1E-13 113.6 11.0 100 301-402 316-436 (436)
188 cd04647 LbH_MAT_like Maltose O 98.9 9.3E-09 2E-13 88.9 10.5 35 301-335 2-38 (109)
189 cd02503 MobA MobA catalyzes th 98.9 5.2E-09 1.1E-13 99.5 9.6 105 18-139 1-109 (181)
190 TIGR02092 glgD glucose-1-phosp 98.9 5.9E-09 1.3E-13 110.9 10.6 81 322-405 276-356 (369)
191 KOG3121|consensus 98.9 2.7E-09 5.8E-14 91.6 6.1 66 334-399 83-149 (184)
192 cd04647 LbH_MAT_like Maltose O 98.9 1.3E-08 2.8E-13 88.0 10.3 85 319-403 2-92 (109)
193 PRK10191 putative acyl transfe 98.9 1.1E-08 2.5E-13 92.4 10.2 13 354-366 94-106 (146)
194 PLN02694 serine O-acetyltransf 98.9 8.8E-09 1.9E-13 102.2 10.2 65 335-402 180-245 (294)
195 TIGR03535 DapD_actino 2,3,4,5- 98.9 1.8E-08 4E-13 99.2 12.3 42 307-350 166-208 (319)
196 TIGR02091 glgC glucose-1-phosp 98.9 1.1E-08 2.4E-13 108.5 11.7 82 320-403 279-360 (361)
197 cd04180 UGPase_euk_like Eukary 98.9 1.2E-08 2.5E-13 102.5 10.8 64 19-83 2-76 (266)
198 cd03354 LbH_SAT Serine acetylt 98.9 1.8E-08 3.9E-13 85.9 10.5 64 336-404 23-89 (101)
199 cd00208 LbetaH Left-handed par 98.9 1.4E-08 3.1E-13 81.8 9.3 34 320-353 2-36 (78)
200 TIGR01208 rmlA_long glucose-1- 98.9 1.4E-08 3.1E-13 107.2 11.6 92 309-404 245-339 (353)
201 PRK02862 glgC glucose-1-phosph 98.9 7.8E-09 1.7E-13 111.8 9.7 99 300-400 308-427 (429)
202 TIGR01172 cysE serine O-acetyl 98.8 1.8E-08 4E-13 93.5 10.4 33 370-402 114-146 (162)
203 PRK10191 putative acyl transfe 98.8 2.4E-08 5.3E-13 90.3 10.0 27 372-398 95-121 (146)
204 PLN02357 serine acetyltransfer 98.8 2E-08 4.4E-13 102.4 10.5 82 301-385 227-312 (360)
205 cd05825 LbH_wcaF_like wcaF-lik 98.8 5E-08 1.1E-12 84.1 11.5 33 370-402 57-89 (107)
206 TIGR02665 molyb_mobA molybdopt 98.8 2.1E-08 4.6E-13 95.7 10.1 108 18-139 1-113 (186)
207 PRK00317 mobA molybdopterin-gu 98.8 2.3E-08 4.9E-13 96.2 10.3 107 17-139 3-114 (193)
208 cd00208 LbetaH Left-handed par 98.8 3.2E-08 6.8E-13 79.7 9.6 32 303-334 3-34 (78)
209 COG2171 DapD Tetrahydrodipicol 98.8 2.4E-08 5.1E-13 96.4 9.8 95 294-388 114-219 (271)
210 COG0448 GlgC ADP-glucose pyrop 98.8 1.7E-08 3.7E-13 103.2 9.4 93 311-406 272-364 (393)
211 PRK10092 maltose O-acetyltrans 98.8 4.8E-08 1E-12 92.3 11.6 8 337-344 101-108 (183)
212 TIGR03202 pucB xanthine dehydr 98.8 2.5E-08 5.5E-13 95.6 9.8 113 18-139 1-121 (190)
213 KOG1460|consensus 98.8 2.1E-08 4.6E-13 97.0 8.6 73 313-385 283-356 (407)
214 PLN02728 2-C-methyl-D-erythrit 98.8 4.3E-08 9.3E-13 97.6 11.1 117 15-142 22-146 (252)
215 PRK00725 glgC glucose-1-phosph 98.8 2.2E-08 4.8E-13 108.2 9.7 75 331-407 323-397 (425)
216 PLN02357 serine acetyltransfer 98.7 5.3E-08 1.1E-12 99.4 11.0 65 335-402 246-311 (360)
217 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 2E-07 4.4E-12 96.0 15.4 198 15-230 13-256 (323)
218 PRK11132 cysE serine acetyltra 98.7 5.6E-08 1.2E-12 96.6 10.7 80 298-382 139-224 (273)
219 PLN02739 serine acetyltransfer 98.7 4.3E-08 9.4E-13 99.2 9.8 20 465-484 325-344 (355)
220 PLN02739 serine acetyltransfer 98.7 5.2E-08 1.1E-12 98.6 9.9 15 301-315 206-220 (355)
221 TIGR01172 cysE serine O-acetyl 98.7 6.3E-08 1.4E-12 89.9 9.8 34 373-408 123-156 (162)
222 cd03354 LbH_SAT Serine acetylt 98.7 1.1E-07 2.4E-12 81.1 10.5 80 301-385 3-88 (101)
223 PRK00844 glgC glucose-1-phosph 98.7 5.4E-08 1.2E-12 104.7 10.6 70 333-404 313-382 (407)
224 COG2068 Uncharacterized MobA-r 98.7 7.1E-08 1.5E-12 90.0 9.4 117 16-142 4-125 (199)
225 cd05825 LbH_wcaF_like wcaF-lik 98.7 1.3E-07 2.8E-12 81.5 10.5 35 374-408 55-89 (107)
226 PF01128 IspD: 2-C-methyl-D-er 98.7 6.6E-08 1.4E-12 93.9 9.5 111 18-141 1-119 (221)
227 COG1045 CysE Serine acetyltran 98.7 1.1E-07 2.3E-12 87.8 9.8 14 354-367 121-134 (194)
228 PTZ00339 UDP-N-acetylglucosami 98.7 4.6E-07 1E-11 97.4 16.0 196 16-228 105-349 (482)
229 KOG1322|consensus 98.7 4.7E-08 1E-12 96.4 7.6 93 295-387 259-352 (371)
230 KOG4042|consensus 98.7 2.9E-08 6.3E-13 86.1 5.0 104 300-403 8-129 (190)
231 PRK14489 putative bifunctional 98.6 1.5E-07 3.3E-12 99.4 11.4 113 16-140 4-119 (366)
232 cd02518 GT2_SpsF SpsF is a gly 98.6 1.6E-07 3.5E-12 93.1 10.9 110 20-142 2-116 (233)
233 PRK02726 molybdopterin-guanine 98.6 2.3E-07 4.9E-12 89.7 11.2 108 17-139 7-118 (200)
234 cd03349 LbH_XAT Xenobiotic acy 98.5 7E-07 1.5E-11 81.1 10.1 33 369-401 73-105 (145)
235 COG1045 CysE Serine acetyltran 98.5 4.9E-07 1.1E-11 83.6 8.5 32 370-401 120-151 (194)
236 COG1211 IspD 4-diphosphocytidy 98.5 2.9E-06 6.3E-11 82.1 13.4 86 17-107 4-93 (230)
237 cd03349 LbH_XAT Xenobiotic acy 98.4 2.2E-06 4.7E-11 77.9 10.3 37 373-409 71-107 (145)
238 PLN02474 UTP--glucose-1-phosph 98.4 2.9E-05 6.4E-10 82.9 19.9 190 17-228 79-307 (469)
239 PRK14500 putative bifunctional 98.4 1.5E-06 3.2E-11 90.4 9.3 117 7-139 151-270 (346)
240 COG0110 WbbJ Acetyltransferase 98.3 2.4E-06 5.2E-11 81.8 10.0 84 317-400 66-155 (190)
241 KOG4042|consensus 98.3 8.8E-07 1.9E-11 77.0 4.9 103 295-402 21-140 (190)
242 COG0746 MobA Molybdopterin-gua 98.3 2E-06 4.2E-11 81.9 7.8 97 16-133 3-105 (192)
243 TIGR02353 NRPS_term_dom non-ri 98.1 1E-05 2.2E-10 92.3 10.1 69 335-408 131-199 (695)
244 PRK14490 putative bifunctional 98.1 1.1E-05 2.5E-10 85.4 9.9 52 16-71 173-224 (369)
245 PRK00560 molybdopterin-guanine 98.1 4.5E-06 9.7E-11 80.3 5.6 51 16-70 7-58 (196)
246 TIGR02353 NRPS_term_dom non-ri 98.1 1.3E-05 2.7E-10 91.5 10.0 65 336-405 617-681 (695)
247 KOG4750|consensus 97.8 4.5E-05 9.7E-10 71.5 7.1 77 321-400 151-231 (269)
248 COG0110 WbbJ Acetyltransferase 97.8 0.00012 2.6E-09 70.0 9.6 36 375-410 124-159 (190)
249 cd00897 UGPase_euk Eukaryotic 97.8 0.00038 8.3E-09 70.6 13.5 190 17-228 3-231 (300)
250 COG4801 Predicted acyltransfer 97.7 9.8E-05 2.1E-09 69.5 7.6 85 300-385 16-102 (277)
251 KOG4750|consensus 97.7 5.5E-05 1.2E-09 70.9 5.9 64 336-406 175-241 (269)
252 COG1083 NeuA CMP-N-acetylneura 97.7 0.00046 1E-08 64.8 11.8 210 19-283 5-223 (228)
253 PLN02435 probable UDP-N-acetyl 97.7 0.00055 1.2E-08 73.8 13.8 196 16-230 115-364 (493)
254 COG4801 Predicted acyltransfer 97.7 0.00026 5.6E-09 66.7 9.5 87 320-406 18-105 (277)
255 PF02348 CTP_transf_3: Cytidyl 97.6 0.00055 1.2E-08 66.9 10.6 110 20-142 2-117 (217)
256 PF14602 Hexapep_2: Hexapeptid 97.5 0.00011 2.3E-09 48.6 3.0 27 321-348 4-30 (34)
257 PF14602 Hexapep_2: Hexapeptid 97.2 0.00036 7.8E-09 46.1 3.4 13 337-349 3-15 (34)
258 PF00132 Hexapep: Bacterial tr 97.2 0.00031 6.8E-09 47.1 2.8 6 340-345 24-29 (36)
259 cd06424 UGGPase UGGPase cataly 97.2 0.0026 5.7E-08 64.9 10.5 158 20-187 3-211 (315)
260 PF01704 UDPGP: UTP--glucose-1 97.0 0.013 2.8E-07 62.7 14.6 160 16-187 55-255 (420)
261 COG4284 UDP-glucose pyrophosph 97.0 0.014 3.1E-07 61.6 14.0 162 15-188 103-304 (472)
262 COG1861 SpsF Spore coat polysa 96.8 0.012 2.5E-07 55.9 10.0 110 18-142 3-120 (241)
263 PRK13412 fkp bifunctional fuco 96.5 0.011 2.4E-07 68.7 10.2 138 118-277 154-306 (974)
264 PLN02830 UDP-sugar pyrophospho 96.4 0.064 1.4E-06 59.9 15.0 144 16-165 127-319 (615)
265 PF09090 MIF4G_like_2: MIF4G l 96.4 0.051 1.1E-06 54.4 12.5 117 471-597 12-133 (253)
266 PRK00576 molybdopterin-guanine 95.7 0.014 2.9E-07 55.2 4.6 35 36-71 3-39 (178)
267 PF07959 Fucokinase: L-fucokin 95.1 0.04 8.7E-07 59.2 6.5 53 324-376 273-325 (414)
268 PF07959 Fucokinase: L-fucokin 94.6 0.067 1.4E-06 57.5 6.4 55 338-393 270-324 (414)
269 KOG1104|consensus 93.1 0.72 1.6E-05 51.4 10.9 116 472-597 502-619 (759)
270 TIGR03552 F420_cofC 2-phospho- 92.1 0.32 7E-06 46.4 6.2 84 46-139 30-116 (195)
271 cd00761 Glyco_tranf_GTA_type G 91.8 1 2.2E-05 39.7 8.8 92 40-135 2-97 (156)
272 PF04519 Bactofilin: Polymer-f 87.8 1.3 2.7E-05 37.4 5.5 93 307-403 3-96 (101)
273 COG1664 CcmA Integral membrane 86.8 3.5 7.5E-05 37.3 8.0 101 304-408 21-122 (146)
274 PF02847 MA3: MA3 domain; Int 86.1 16 0.00035 31.1 11.7 104 468-588 1-112 (113)
275 PRK13412 fkp bifunctional fuco 82.4 1.9 4.1E-05 50.8 5.4 29 539-567 511-539 (974)
276 PF00535 Glycos_transf_2: Glyc 79.6 8 0.00017 34.7 7.7 99 40-142 3-106 (169)
277 PF04519 Bactofilin: Polymer-f 74.3 7.5 0.00016 32.6 5.4 69 315-385 27-96 (101)
278 KOG2638|consensus 72.3 1.4E+02 0.003 31.8 18.5 113 18-133 104-256 (498)
279 COG1664 CcmA Integral membrane 68.3 25 0.00054 31.8 7.6 74 314-388 47-120 (146)
280 PF02583 Trns_repr_metal: Meta 64.4 23 0.0005 28.8 6.0 43 473-519 18-60 (85)
281 PRK11352 regulator protein Frm 58.3 51 0.0011 27.2 7.0 36 473-508 22-57 (91)
282 cd04195 GT2_AmsE_like GT2_AmsE 57.9 1.1E+02 0.0023 28.6 10.5 96 40-140 3-106 (201)
283 KOG2388|consensus 57.6 11 0.00024 40.4 3.7 82 14-96 94-191 (477)
284 PF10474 DUF2451: Protein of u 55.3 1.6E+02 0.0034 29.0 11.2 40 557-600 162-202 (234)
285 cd04186 GT_2_like_c Subfamily 53.4 1.1E+02 0.0024 27.0 9.5 94 40-140 2-100 (166)
286 PF14134 DUF4301: Domain of un 52.0 74 0.0016 34.6 8.7 47 35-81 165-221 (513)
287 cd02510 pp-GalNAc-T pp-GalNAc- 51.8 77 0.0017 32.2 9.0 100 40-141 3-110 (299)
288 cd06423 CESA_like CESA_like is 51.6 1.1E+02 0.0023 27.1 9.1 98 40-140 2-104 (180)
289 PRK11376 hlyE hemolysin E; Pro 48.4 52 0.0011 31.4 6.1 66 469-549 40-106 (303)
290 PRK15039 transcriptional repre 47.6 88 0.0019 25.7 6.7 35 473-507 22-56 (90)
291 cd04179 DPM_DPG-synthase_like 46.6 1E+02 0.0022 28.2 8.2 95 40-138 2-103 (185)
292 cd04188 DPG_synthase DPG_synth 42.5 1.3E+02 0.0028 28.4 8.5 94 40-138 2-106 (211)
293 cd06439 CESA_like_1 CESA_like_ 38.1 3.2E+02 0.007 26.4 10.8 99 35-139 27-134 (251)
294 COG1937 Uncharacterized protei 37.8 1.6E+02 0.0035 24.2 6.7 41 473-513 22-62 (89)
295 PRK00923 sirohydrochlorin coba 37.0 47 0.001 29.0 4.0 23 45-67 44-66 (126)
296 cd06427 CESA_like_2 CESA_like_ 36.5 3.1E+02 0.0068 26.5 10.3 98 40-140 6-110 (241)
297 TIGR00285 DNA-binding protein 34.5 48 0.001 27.0 3.2 41 41-81 4-50 (87)
298 cd06433 GT_2_WfgS_like WfgS an 34.2 2.2E+02 0.0048 26.0 8.5 94 41-141 4-102 (202)
299 PHA01399 membrane protein P6 33.1 2.4E+02 0.0053 26.3 7.8 62 531-599 34-95 (242)
300 cd02511 Beta4Glucosyltransfera 32.0 2E+02 0.0043 27.8 7.9 89 40-139 5-95 (229)
301 PF00123 Hormone_2: Peptide ho 31.5 31 0.00068 21.6 1.3 10 608-617 18-27 (28)
302 KOG1241|consensus 30.1 3.1E+02 0.0068 31.6 9.5 135 467-619 494-646 (859)
303 PRK11204 N-glycosyltransferase 29.7 2.1E+02 0.0045 30.7 8.3 97 40-140 59-160 (420)
304 cd04184 GT2_RfbC_Mx_like Myxoc 29.5 3E+02 0.0065 25.4 8.6 95 41-139 7-108 (202)
305 cd02525 Succinoglycan_BP_ExoA 27.9 3.7E+02 0.008 25.7 9.2 95 40-139 5-106 (249)
306 smart00352 POU Found in Pit-Oc 27.9 2E+02 0.0043 22.8 5.5 26 486-511 9-34 (75)
307 cd06434 GT2_HAS Hyaluronan syn 27.7 2.9E+02 0.0063 26.3 8.4 94 40-139 5-102 (235)
308 TIGR00288 conserved hypothetic 26.9 5E+02 0.011 23.9 10.3 102 17-142 22-128 (160)
309 PF09851 SHOCT: Short C-termin 26.8 71 0.0015 20.4 2.4 19 577-595 6-24 (31)
310 PRK10018 putative glycosyl tra 26.6 4.8E+02 0.01 26.3 9.8 94 41-140 11-111 (279)
311 cd06442 DPM1_like DPM1_like re 26.6 3.6E+02 0.0078 25.3 8.8 95 40-138 2-102 (224)
312 PF02273 Acyl_transf_2: Acyl t 25.6 64 0.0014 31.9 3.0 16 19-34 31-46 (294)
313 PF02671 PAH: Paired amphipath 25.6 1.2E+02 0.0026 21.2 3.8 42 536-577 3-44 (47)
314 smart00070 GLUCA Glucagon like 24.5 52 0.0011 20.4 1.4 10 608-617 18-27 (27)
315 cd04187 DPM1_like_bac Bacteria 24.4 3.6E+02 0.0077 24.5 8.0 94 41-138 3-104 (181)
316 COG0381 WecB UDP-N-acetylgluco 22.7 1.3E+02 0.0028 31.8 4.8 88 52-141 22-115 (383)
317 cd06420 GT2_Chondriotin_Pol_N 22.5 4.9E+02 0.011 23.4 8.5 96 40-138 2-103 (182)
318 TIGR02990 ectoine_eutA ectoine 21.8 4.9E+02 0.011 25.7 8.5 116 14-137 68-202 (239)
319 KOG2023|consensus 21.7 6.9E+02 0.015 28.6 10.1 41 542-582 480-522 (885)
320 PF14131 DUF4298: Domain of un 21.5 3.9E+02 0.0084 21.9 6.5 13 585-597 63-75 (90)
321 PLN02726 dolichyl-phosphate be 21.1 5.7E+02 0.012 24.7 9.1 95 41-139 15-118 (243)
322 cd04196 GT_2_like_d Subfamily 20.8 4.4E+02 0.0096 24.3 8.0 92 40-138 3-103 (214)
323 PF04147 Nop14: Nop14-like fam 20.6 1.2E+03 0.026 27.8 12.8 38 483-520 437-478 (840)
324 cd03409 Chelatase_Class_II Cla 20.4 1.4E+02 0.003 24.5 3.8 23 46-68 44-66 (101)
325 KOG4511|consensus 20.3 6.6E+02 0.014 25.1 8.6 18 549-566 118-135 (335)
326 cd06438 EpsO_like EpsO protein 20.1 6.6E+02 0.014 22.8 10.1 96 40-140 2-107 (183)
No 1
>KOG1461|consensus
Probab=100.00 E-value=2e-119 Score=933.18 Aligned_cols=619 Identities=36% Similarity=0.607 Sum_probs=540.0
Q ss_pred CCCcccC-------CccccccCCceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCC
Q psy1482 1 MQHKKGK-------AKSEIQKDEVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71 (627)
Q Consensus 1 ~~~~~~~-------~~~~~~~~~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~ 71 (627)
|+||||. +|.+...++.+|||+||+.|.+||+|+ .+|++||||+|.|||+|+|++|.++||++|+|+|+.|
T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~ 80 (673)
T KOG1461|consen 1 MAKKKKRPAALGETGKEENFREHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH 80 (673)
T ss_pred CCcccCcccccccCcccccccccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc
Confidence 7777752 122222378999999999999999999 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccccc-CCeeEEEEeCCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCce
Q psy1482 72 VNQIRELVKRKEKSL-VGTLITLIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAV 150 (627)
Q Consensus 72 ~~~i~~~l~~~~~~~-~~~~v~~i~~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~ 150 (627)
+.||++|+++++|.. ..+.+..+....++++|||||+++.++++++||+|++||+++|++|.+++++||+|+|.||+++
T Consensus 81 ~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~i 160 (673)
T KOG1461|consen 81 AAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAI 160 (673)
T ss_pred HHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccce
Confidence 999999999999974 2345666667789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhc
Q psy1482 151 ALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSD 230 (627)
Q Consensus 151 ~T~~~~~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~ 230 (627)
|||++++.+ .+.+.+..++++|+.|+|+++|.+....+..+.+|+++|..++++.+++||.||+|.||||+++.+|++
T Consensus 161 MTmv~k~~s--t~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~d 238 (673)
T KOG1461|consen 161 MTMVFKESS--TRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTD 238 (673)
T ss_pred EEEEEeccc--cccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhh
Confidence 999999975 233356788999999999999998444567899999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCC--------ceeecCeEE
Q psy1482 231 NFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPS--------YKYRRNNIY 302 (627)
Q Consensus 231 ~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~--------~~~~~~~~~ 302 (627)
|||||.|.||++|+|. ++++|++||+|.++...|+.+|.++++|..+++++++||+||++|+ +.+.+.++|
T Consensus 239 NFDyq~r~DfV~GvL~-~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IY 317 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLV-DDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIY 317 (673)
T ss_pred cccceehhhhhhhhhh-hhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccc
Confidence 9999999999999998 5699999999999865599999999999999999999999999998 567789999
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCc
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS 382 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~ 382 (627)
.++.+++++.+.++.+++||.++.||.++.|.||+||.||+||.||+|.+|+||.||+||+||.|.+|+||++|.|+.|+
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~ 397 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGA 397 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCEECCCcEECCCcEECCCcccCCCCC-CCCCC--------------------CCCC-Ccccc---cccCC---CC
Q psy1482 383 KLLNGCLLGTGVLIGNKTCLSGVKLPSAGAD-EVDDG--------------------NNDS-DEEEV---PKFKC---ES 434 (627)
Q Consensus 383 ~i~~~~ii~~~~~ig~~~~v~~~~~v~~~~~-~~~~~--------------------~~~~-~~~~~---~~~~~---~~ 434 (627)
++.+||+||.+|++|++-+++.+++|..+.+ +++++ .++. +++|. ..+.. ..
T Consensus 398 ~l~~g~vl~~~VVv~~~~~l~~ns~~~~p~~eesdee~~~~~~l~siG~~G~gyi~~~~~~~dee~~~~~~~~~~~k~n~ 477 (673)
T KOG1461|consen 398 ILKPGSVLGFGVVVGRNFVLPKNSKVRQPTTEESDEEGLDDVKLKSIGPDGAGYIWETEDADDEEWKPLVPPSPNDKTNE 477 (673)
T ss_pred ccCCCcEEeeeeEeCCCccccccccccCCcccccchhhccchheeeccCCcceeeecccCcccccccccccCCccccccc
Confidence 9999999999999999999999999865322 11110 0111 12221 01111 11
Q ss_pred CcccCC-CCCCCCCCCCCCCCCCCCCC-CCCchhhHHHHHHHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHH
Q psy1482 435 EQELDS-DESDSESENDVDSVDGQGTP-PMDDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMV 512 (627)
Q Consensus 435 ~~~~d~-~~~~~~~~~~~~~~~~~~~~-~~dd~~~F~~ev~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~ 512 (627)
..++|+ +++.|.+++++ +.++ ..||+..|++||.++++|+++|++.+|++++|||+||+|||++++||+.+++
T Consensus 478 ~~~~Dd~~se~s~~~~ed-----d~~~~in~d~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~ 552 (673)
T KOG1461|consen 478 AIEDDDSESESSVSEEED-----DASTDINDDTKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVF 552 (673)
T ss_pred ccccccchhhcccccccc-----ccccccCchhHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHH
Confidence 111122 11111111111 1122 2368899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCchhHHHHHHHHHhhHHHHHHHhhcCcHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChh
Q psy1482 513 KAILVVKN-KPDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSED 591 (627)
Q Consensus 513 ~ail~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee 591 (627)
.|+|..+. ...+....+..++.+++++|++++.+|+++.+.|+++|.+||.+|.++..+.+.+.++++.||+.|||+|+
T Consensus 553 ~all~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~y~ks~deqid~l~~led~~~e~~~~~~~~~~~v~~lY~~dil~Ed 632 (673)
T KOG1461|consen 553 MALLKLILHQDHSSMNEVKRAALKVFTQWGPLLGNYIKSEDEQIDLLLALEDKCVESEELGPKAAKLVHYLYDYDILQED 632 (673)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhHH
Confidence 99999987 55554555788999999999999999999999999999999999999988889999999999999999999
Q ss_pred hHhhhhhcCC-----chhHHhhhHHHHHHhccccCCCCCCC
Q psy1482 592 IVTKWFNKLE-----PSSLRKSVEPFVKWLLEADEESEEDD 627 (627)
Q Consensus 592 ~il~W~~~~~-----~~~~~~~~~~fi~WL~eaeee~~ee~ 627 (627)
+|++||.... .++.++++++||+||+||+||||+||
T Consensus 633 aI~~W~~~~~~~~~~~~~~~~~~k~fv~WL~easeE~~~ee 673 (673)
T KOG1461|consen 633 AILSWSSQKAGDDEEDAVYNQQLKKFVDWLKEASEEEESEE 673 (673)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 9999998744 46788899999999999999999886
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-49 Score=413.10 Aligned_cols=312 Identities=24% Similarity=0.359 Sum_probs=230.0
Q ss_pred ceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEE
Q psy1482 17 VLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
.|+|||||||+||||+|+ .+|||||||+|+|||+|+|++|..+|+++|+|.|+++.++|++|+.+..+ .+++|.|+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~--~~~~I~y~ 78 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG--LGVRITYV 78 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc--cCCceEEE
Confidence 599999999999999999 99999999999999999999999999999999999999999999998422 35889999
Q ss_pred eCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
.+....|||++|+ .+.+.+. ++|++++||++++.|+..++++|+++ .+.+|+.......+..+| ++..
T Consensus 79 ~e~~~lGTag~l~--~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~-----~~~~~~~~~~~~~~~~~G----vv~~ 147 (358)
T COG1208 79 VEKEPLGTAGALK--NALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKK-----GALATIALTRVLDPSEFG----VVET 147 (358)
T ss_pred ecCCcCccHHHHH--HHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhc-----cCccEEEEEecCCCCcCc----eEEe
Confidence 9999999999999 5566676 79999999999999999999999986 578888888777666776 7777
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccC
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDC 253 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~ 253 (627)
+..+++|..+.++|.. . ...++++++|+|+|+|++|.++...-.+.-..++++.++. .+.
T Consensus 148 ~~~~~~v~~f~ekp~~----~------------~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~----~~~ 207 (358)
T COG1208 148 DDGDGRVVEFREKPGP----E------------EPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAA----KGE 207 (358)
T ss_pred cCCCceEEEEEecCCC----C------------CCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHh----CCC
Confidence 7444699999998731 0 1256899999999999999965543111112234443332 244
Q ss_pred eeEEEEcCCCceeeecCChhhHHHHhHHHhhcccC-CCCCC--c------eeecCeEEECCCeEECCCCEEcCCcEECCC
Q psy1482 254 RLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVH-PFVPS--Y------KYRRNNIYLAEDVLIGKTSVLKQQVVIGEG 324 (627)
Q Consensus 254 ~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~-~~~~~--~------~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~ 324 (627)
.++++... + ||.+|++|++|.++++.++++... +..+. . .++.+++++++++.|++++.|+++++||++
T Consensus 208 ~v~~~~~~-g-~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~ 285 (358)
T COG1208 208 DVYGYVFE-G-YWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEG 285 (358)
T ss_pred cEEEEEeC-C-eEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCC
Confidence 69999998 6 999999999999999999864432 21110 0 233444444444455544445444555555
Q ss_pred CEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCC
Q psy1482 325 SSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIED 363 (627)
Q Consensus 325 ~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~ 363 (627)
|.|+.++.|.+|+|+++|.|+++++|.+|+|+.+|+||.
T Consensus 286 ~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 286 VTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 555555444555555555555555555555555555544
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=5.7e-48 Score=416.29 Aligned_cols=372 Identities=15% Similarity=0.215 Sum_probs=281.6
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcc-ccc-----
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE-KSL----- 86 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~-~~~----- 86 (627)
..|+|||||||+|+||+|| .+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|++... |+.
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 81 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFG 81 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccC
Confidence 4699999999999999999 999999999997 9999999999999999999999999999999998642 220
Q ss_pred -CCeeEEEEeCC-----CCcchhhhhhcccc--cCC---ccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEe
Q psy1482 87 -VGTLITLIVSD-----GCYSFGDVMRDLDG--KAV---IRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLY 155 (627)
Q Consensus 87 -~~~~v~~i~~~-----~~~~~gdalr~l~~--~~~---i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~ 155 (627)
..+.+.+..+. ...|+|+|++.... ... +.++|+|++||++++.++.+++++|+++ ++.+|+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~-----~a~~ti~~ 156 (436)
T PLN02241 82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRES-----GADITIAC 156 (436)
T ss_pred CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHc-----CCCEEEEE
Confidence 11233333232 36899999985311 111 2478999999999999999999999886 68899999
Q ss_pred eccCC--CCCCCCcceEEEEECCCCeEEEeeCCCCC--CCccccchhhhccCC-cEEEEecCCcceeeecCCchhh-hhh
Q psy1482 156 KKKGQ--SKSSWKEDLIVAYECDSKKLLMHQTPQDN--QKKVNIPMENILLYS-KLEICAHLASTGIMICSPAVPP-LFS 229 (627)
Q Consensus 156 ~~~~~--~~~~~~~~~vv~~d~~~~~vl~~~e~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~Giyi~s~~vl~-~~~ 229 (627)
++++. +.+|+ ++.+| ++++|++|.++|.. ...+++|.++|..++ .++.+.+++++|||+|+|++|. +++
T Consensus 157 ~~v~~~~~~~yg----vv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 157 LPVDESRASDFG----LMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred EecchhhcCcce----EEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 88753 34555 88887 68899999998852 235677777776554 2444568999999999999995 666
Q ss_pred cCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCCceeecCeEEE----CC
Q psy1482 230 DNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYL----AE 305 (627)
Q Consensus 230 ~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~~~~~~~~~~i----~~ 305 (627)
+.++. ..+|..+++......|.+|++|.++ + ||.+|++|++|++++++++........ ......++. .+
T Consensus 232 ~~~~~--~~~~~~dil~~l~~~g~~v~~~~~~-g-yw~dIg~~~~y~~a~~~~l~~~~~~~~---~~~~~~i~~~~~~~~ 304 (436)
T PLN02241 232 WRFPT--ANDFGSEIIPGAIKEGYNVQAYLFD-G-YWEDIGTIKSFYEANLALTKQPPKFSF---YDPDAPIYTSPRFLP 304 (436)
T ss_pred hhccc--ccchhHHHHHHHhhcCCeEEEEeeC-C-EEEECCCHHHHHHHHHHHhcCCchhhc---cCCCCcccccCCCCC
Confidence 55432 2355555554433456899999998 7 999999999999999999975311000 000111221 13
Q ss_pred CeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCC-------------------CEeCCCcE
Q psy1482 306 DVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN-------------------VKIEDNCE 366 (627)
Q Consensus 306 ~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~-------------------v~Ig~~~~ 366 (627)
++.+ .++.+.+ ++|+++|.|+ +|.|++|+||++|.||++|+|.+|+|+.+ ++||++|.
T Consensus 305 ~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 381 (436)
T PLN02241 305 PSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTK 381 (436)
T ss_pred CcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCE
Confidence 3444 4566664 8999999999 99999999999999999999999888662 38999999
Q ss_pred EeeeeecCCcEECCCcEEC------------CCCEECCC-cEECCCcEECCCcc
Q psy1482 367 VRLSVLSYNTGVGEHSKLL------------NGCLLGTG-VLIGNKTCLSGVKL 407 (627)
Q Consensus 367 i~~~ii~~~~~Ig~~~~i~------------~~~ii~~~-~~ig~~~~v~~~~~ 407 (627)
|.+++|+++|+||+++.|. ++|+|+.+ |+||+++.+..|++
T Consensus 382 i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 435 (436)
T PLN02241 382 IRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV 435 (436)
T ss_pred EcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCC
Confidence 9999999999999999887 34555555 45555555555554
No 4
>KOG1462|consensus
Probab=100.00 E-value=4.5e-48 Score=380.70 Aligned_cols=378 Identities=21% Similarity=0.351 Sum_probs=293.8
Q ss_pred cCCceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHhccccc-CCe
Q psy1482 14 KDEVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSL-VGT 89 (627)
Q Consensus 14 ~~~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~-~~~ 89 (627)
+..+|||||+|+|.|+||--+ ..|||||||+|+|||+|.|.+|.++|+++|+|++.. ....|+..|....-.. .+.
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPD 85 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccccccc
Confidence 346799999999999999766 889999999999999999999999999999999996 5678888886532110 111
Q ss_pred eEEEEe-CCCCcchhhhhhcccccCCccC-CEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC---CCCCC
Q psy1482 90 LITLIV-SDGCYSFGDVMRDLDGKAVIRN-DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG---QSKSS 164 (627)
Q Consensus 90 ~v~~i~-~~~~~~~gdalr~l~~~~~i~~-dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~---~~~~~ 164 (627)
-+.+.. .+...|+++.||.+. +.|++ ||++++||.++++++..+++.||.. |+...|++.-.... +.++.
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy--~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~---d~slamli~~~~s~~~~pgqk~ 160 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIY--SKIKSEDFLVLSCDFVTDVPLQPLVDKFRAT---DASLAMLIGNALSEVPIPGQKG 160 (433)
T ss_pred EEEeecccccccCCHHHHhhhh--hhhccCCEEEEecccccCCCcHHHHHHHhcc---ChhHhHHhccccccccccCccc
Confidence 122221 234679999999654 45776 9999999999999999999999965 34444444311111 22222
Q ss_pred C--CcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCc-hhhhh
Q psy1482 165 W--KEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQT-QEHFI 241 (627)
Q Consensus 165 ~--~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~-~~dfi 241 (627)
. +...++.+++.++|+++.....+.+..+.+.+++++.||++.+.++|.|+++|+|+.+++.+|.++....+ +.+|+
T Consensus 161 k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~ 240 (433)
T KOG1462|consen 161 KKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFL 240 (433)
T ss_pred ccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccccc
Confidence 2 34568889988999988877666778899999999999999999999999999999999999998766666 78888
Q ss_pred cccccChh---------------------cc-------cCeeEEEEcCCCceeeecCChhhHHHHhHH-HhhcccCCCCC
Q psy1482 242 KGVLINEE---------------------IL-------DCRLYCSVVDDIEYGISVKDWPSYQIASRD-IVQRWVHPFVP 292 (627)
Q Consensus 242 ~~il~~~~---------------------~~-------g~~I~~~~~~~~~~~~~V~s~~~y~~a~~d-il~~~~~~~~~ 292 (627)
+.++.++- -. ..++|+|.++.+.-+.+++++..|+++|++ .+.+ +.+
T Consensus 241 P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~----l~~ 316 (433)
T KOG1462|consen 241 PYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKK----LCS 316 (433)
T ss_pred chhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHH----hcc
Confidence 87765432 11 257888888775578899999999999963 1221 111
Q ss_pred CceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeee
Q psy1482 293 SYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 293 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii 372 (627)
+..+....+ ...+.++..+++|++|+|++++.|..|+||.+|.||+.|+|.+|+|++||+||+||.|++|||
T Consensus 317 e~~~~k~~~--------~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensII 388 (433)
T KOG1462|consen 317 EAKFVKNYV--------KKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSII 388 (433)
T ss_pred ccccccchh--------hheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceeccee
Confidence 111111111 112556778899999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
|.++.||.|+.+. +|+||.+-+|.+.....+.+.+.
T Consensus 389 g~gA~Ig~gs~L~-nC~Ig~~yvVeak~~~~~ev~~~ 424 (433)
T KOG1462|consen 389 GMGAQIGSGSKLK-NCIIGPGYVVEAKGKHGGEVLVS 424 (433)
T ss_pred cccceecCCCeee-eeEecCCcEEcccccccccEeec
Confidence 9999999999999 79999999998776655544443
No 5
>KOG1322|consensus
Probab=100.00 E-value=2.1e-47 Score=369.08 Aligned_cols=340 Identities=16% Similarity=0.241 Sum_probs=261.9
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhccccc-CCeeEE
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSL-VGTLIT 92 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~-~~~~v~ 92 (627)
+.|+|+||.+|+||||+|| .+||||+|++|+|||+|.+++|..+||++|++.+++..+++..|+.+. |+. .+++|.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~-y~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKA-YGKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHH-hhhccceEEE
Confidence 6899999999999999999 999999999999999999999999999999999999888676666542 221 346666
Q ss_pred EEeCCCCcchhhhhhcccccCCc--c--CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcc
Q psy1482 93 LIVSDGCYSFGDVMRDLDGKAVI--R--NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKED 168 (627)
Q Consensus 93 ~i~~~~~~~~gdalr~l~~~~~i--~--~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~ 168 (627)
+..|..+.++++-+. .+++++ . .+|+|++||+++.+|+.+++++|+.+ ++..|+++.++..+++||
T Consensus 87 ~s~eteplgtaGpl~--laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~-----gae~TI~~t~vdepSkyG--- 156 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLA--LARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAH-----GAEITIVVTKVDEPSKYG--- 156 (371)
T ss_pred EEeccCCCcccchHH--HHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhc-----CCceEEEEEeccCccccc---
Confidence 666666655554443 122222 2 37999999999999999999999998 699999999999999998
Q ss_pred eEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccCh
Q psy1482 169 LIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINE 248 (627)
Q Consensus 169 ~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~ 248 (627)
++.+|+.+|||.+|.|||. .+.++-+|+|||+|+|++|..+.-...-..++-| + .
T Consensus 157 -vv~~d~~~grV~~F~EKPk------------------d~vsnkinaGiYi~~~~vL~ri~~~ptSiekEif-P-----~ 211 (371)
T KOG1322|consen 157 -VVVIDEDTGRVIRFVEKPK------------------DLVSNKINAGIYILNPEVLDRILLRPTSIEKEIF-P-----A 211 (371)
T ss_pred -eEEEecCCCceeEehhCch------------------hhhhccccceEEEECHHHHhHhhhcccchhhhhh-h-----h
Confidence 9999966999999999883 1255677899999999999876621111112222 2 1
Q ss_pred hcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEEC
Q psy1482 249 EILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIG 328 (627)
Q Consensus 249 ~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig 328 (627)
-+.++++++|.++ | ||.||++|++|+.+..-+++....-.-| .+.+++.+.+++.+.+-..+|
T Consensus 212 ~a~~~~l~a~~l~-g-fWmDIGqpkdf~~g~~~Yl~s~~~~t~~---------------r~~p~~~i~~nvlvd~~~~iG 274 (371)
T KOG1322|consen 212 MAEEHQLYAFDLP-G-FWMDIGQPKDFLTGFSFYLRSLPKYTSP---------------RLLPGSKIVGNVLVDSIASIG 274 (371)
T ss_pred hhhcCceEEEecC-c-hhhhcCCHHHHHHHHHHHHhhCcccCCc---------------cccCCccccccEeeccccccC
Confidence 2567899999999 7 9999999999999988777654321111 122223344444455555555
Q ss_pred CCceeee-eEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcc
Q psy1482 329 ENTQLSH-CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKL 407 (627)
Q Consensus 329 ~~~~I~~-s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~ 407 (627)
++|.|++ ++||.+|+|++++.|.+|.|..++.++.++.|..+++|.++.||.+++|.++|+||.+|.|-+...+.++..
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~ 354 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSG 354 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEeccccccccee
Confidence 6666653 778888888888888888888889999999998999999999999998888888888888887776666644
Q ss_pred c
Q psy1482 408 P 408 (627)
Q Consensus 408 v 408 (627)
.
T Consensus 355 l 355 (371)
T KOG1322|consen 355 L 355 (371)
T ss_pred E
Confidence 3
No 6
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3e-46 Score=401.73 Aligned_cols=369 Identities=15% Similarity=0.238 Sum_probs=281.5
Q ss_pred ceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccC----C-
Q psy1482 17 VLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLV----G- 88 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~----~- 88 (627)
.++|||||||+|+||+|| .+||||+||+|+ |||+|+|++|..+|+++|+|+++++.+++++|+... |... +
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~-~~~~~~~~g~ 81 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQT-YNFDGFSGGF 81 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcC-cCccccCCCE
Confidence 689999999999999999 999999999999 999999999999999999999999999999999763 3211 1
Q ss_pred eeEEEEeCC-----CCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC
Q psy1482 89 TLITLIVSD-----GCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG 159 (627)
Q Consensus 89 ~~v~~i~~~-----~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~ 159 (627)
+.+.+..+. ...|+|+|++ .++.++. ++|+|++||++++.++..+++.|++. ++.+|+++++..
T Consensus 82 ~~i~~~~~~~~~~~~~lGTa~al~--~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~~~ 154 (429)
T PRK02862 82 VEVLAAQQTPENPSWFQGTADAVR--KYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRET-----GADITLAVLPVD 154 (429)
T ss_pred EEEeCCcccCCCCccccCcHHHHH--HHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHc-----CCCEEEEEEecC
Confidence 122222221 1279999998 4455553 57999999999999999999999775 578888887654
Q ss_pred C--CCCCCCcceEEEEECCCCeEEEeeCCCCC--CCccccchhhhccCCc-EEEEecCCcceeeecCCchhh-hhhcCCC
Q psy1482 160 Q--SKSSWKEDLIVAYECDSKKLLMHQTPQDN--QKKVNIPMENILLYSK-LEICAHLASTGIMICSPAVPP-LFSDNFD 233 (627)
Q Consensus 160 ~--~~~~~~~~~vv~~d~~~~~vl~~~e~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~Giyi~s~~vl~-~~~~~fd 233 (627)
. +..|| ++.+| ++++|+.|.++|+. ...+.+|.++|..++. ...+.+++++|+|+|++++|. ++.....
T Consensus 155 ~~~~~~yG----~i~~d-~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~ 229 (429)
T PRK02862 155 EKDASGFG----LMKTD-DDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPE 229 (429)
T ss_pred hhhcccce----EEEEC-CCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCC
Confidence 2 44555 88888 67899999998852 3456778877766653 333456899999999999995 5565433
Q ss_pred CCc-hhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhccc-C-CCCCCceeecCeEEECCCeEEC
Q psy1482 234 FQT-QEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWV-H-PFVPSYKYRRNNIYLAEDVLIG 310 (627)
Q Consensus 234 ~~~-~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~-~-~~~~~~~~~~~~~~i~~~~~i~ 310 (627)
+.. ..|+++.+ +.+.++++|..+ + ||.+|+++++|++++++++.... . .+.+....+.....+.+.+.+
T Consensus 230 ~~~~~~dil~~l-----~~~~~v~~~~~~-g-~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~- 301 (429)
T PRK02862 230 YTDFGKEIIPEA-----IRDYKVQSYLFD-G-YWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKL- 301 (429)
T ss_pred hhhhHHHHHHHH-----hccCcEEEEEeC-C-EEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccc-
Confidence 222 34555433 456789999987 7 99999999999999999883211 0 111110011111223344444
Q ss_pred CCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECC-------------------CCEeCCCcEEeeee
Q psy1482 311 KTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFD-------------------NVKIEDNCEVRLSV 371 (627)
Q Consensus 311 ~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~-------------------~v~Ig~~~~i~~~i 371 (627)
.++.+. ++.||++|.| +++.|++|+||++|+||++|.|.+|+|+. ++.||++|.|.+|+
T Consensus 302 ~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~i 379 (429)
T PRK02862 302 LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAI 379 (429)
T ss_pred cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEE
Confidence 356665 6899999999 89999999999999999999999999986 69999999999999
Q ss_pred ecCCcEECCCcEECC------------CCEECCC-cEECCCcEECCCccc
Q psy1482 372 LSYNTGVGEHSKLLN------------GCLLGTG-VLIGNKTCLSGVKLP 408 (627)
Q Consensus 372 i~~~~~Ig~~~~i~~------------~~ii~~~-~~ig~~~~v~~~~~v 408 (627)
|+++|.||++++|.+ |++|+++ |+|+.++++++|++|
T Consensus 380 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 380 IDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 999999999999953 5667777 677777777777653
No 7
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.1e-46 Score=397.95 Aligned_cols=351 Identities=16% Similarity=0.161 Sum_probs=268.2
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHh-ccccc----C
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKR-KEKSL----V 87 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~-~~~~~----~ 87 (627)
+.|+|||||||+||||+|+ .+||||+||+|+ |||+|+|++|..+|+++|+|+++++.+++++|+++ .+|+. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRING 81 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence 4799999999999999999 899999999999 99999999999999999999999999999999975 34642 1
Q ss_pred CeeEE--EEeCCC---CcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeecc
Q psy1482 88 GTLIT--LIVSDG---CYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKK 158 (627)
Q Consensus 88 ~~~v~--~i~~~~---~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~ 158 (627)
++.+. ++.+.. ..|+++|++ .++++++ ++|+|++||++++.++.++++.|+.. ++.+|+++.+.
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~--~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~-----~~~~tl~~~~~ 154 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIY--QNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK-----EADVTIAVIEV 154 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHH--HHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCCEEEEEEEc
Confidence 23332 333332 489999998 5556564 46999999999999999999999875 46677776554
Q ss_pred --CCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCC-CC
Q psy1482 159 --GQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNF-DF 234 (627)
Q Consensus 159 --~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~f-d~ 234 (627)
..+.+|| ++.+| ++++|..+.++|. .+ ..+++++|+|+|++++|. ++.+.. ..
T Consensus 155 ~~~~~~~yG----~v~~d-~~g~V~~~~eKp~------~~------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 211 (380)
T PRK05293 155 PWEEASRFG----IMNTD-ENMRIVEFEEKPK------NP------------KSNLASMGIYIFNWKRLKEYLIEDEKNP 211 (380)
T ss_pred chhhccccC----EEEEC-CCCcEEEEEeCCC------CC------------CcceeeeEEEEEcHHHHHHHHHHHhhcC
Confidence 3455666 78887 5689999999873 01 346789999999999885 444321 11
Q ss_pred CchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCC--CCCceeecCeEEECCCeEECCC
Q psy1482 235 QTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF--VPSYKYRRNNIYLAEDVLIGKT 312 (627)
Q Consensus 235 ~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~--~~~~~~~~~~~~i~~~~~i~~~ 312 (627)
....+|..+++......|.++++|..+ + ||.+++++++|++++++++....... .+. ..+.+...+.+.+.|+++
T Consensus 212 ~~~~~~~~d~i~~l~~~~~~v~~~~~~-g-~w~digt~~~~~~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 288 (380)
T PRK05293 212 NSSHDFGKNVIPLYLEEGEKLYAYPFK-G-YWKDVGTIESLWEANMELLRPENPLNLFDRN-WRIYSVNPNLPPQYIAEN 288 (380)
T ss_pred CchhhhHHHHHHHHhhcCCeEEEEEeC-C-EEEeCCCHHHHHHHHHHHcCCCchhhhcCCC-CceecCCcCCCCCEECCC
Confidence 113344444443221246789999987 7 99999999999999999886643211 111 111122334556777777
Q ss_pred CEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCC----C
Q psy1482 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNG----C 388 (627)
Q Consensus 313 ~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~----~ 388 (627)
+.| .++.||++|.|+. .+.+|+||++|+||++|+|.+|+|++++.||++|.|.+|+|++++.|++++++.++ .
T Consensus 289 ~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~ 365 (380)
T PRK05293 289 AKV-KNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVIT 365 (380)
T ss_pred CEE-ecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeE
Confidence 777 4788888888863 47799999999999999999999999999999999999999999999999999865 5
Q ss_pred EECCCcEECCCcEE
Q psy1482 389 LLGTGVLIGNKTCL 402 (627)
Q Consensus 389 ii~~~~~ig~~~~v 402 (627)
+||+++.|+.+++|
T Consensus 366 ~ig~~~~~~~~~~~ 379 (380)
T PRK05293 366 VIGENEVIGVGTVI 379 (380)
T ss_pred EEeCCCCCCCCcEe
Confidence 66777666666554
No 8
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.5e-44 Score=385.14 Aligned_cols=337 Identities=16% Similarity=0.172 Sum_probs=252.9
Q ss_pred CCceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeE
Q psy1482 15 DEVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLI 91 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v 91 (627)
...|+|||||||+|+||+|| .+||||+||+|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.. .|...++.+
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~ 81 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQ-TWRLSGLLG 81 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHh-CcCccccCC
Confidence 45799999999999999999 999999999999 99999999999999999999999999999999974 464222333
Q ss_pred EEEe---C-C-----CCcchhhhhhcccccCCccC----CEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeecc
Q psy1482 92 TLIV---S-D-----GCYSFGDVMRDLDGKAVIRN----DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKK 158 (627)
Q Consensus 92 ~~i~---~-~-----~~~~~gdalr~l~~~~~i~~----dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~ 158 (627)
.++. + . ...|+|+|++ .++.++.. +|+|++||++++.++.+++++|+.. ++.+|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~--~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~-----~~~~ti~~~~~ 154 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIY--QSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIES-----GAGVTVAAIRV 154 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHH--HHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCcEEEEEEec
Confidence 3332 1 1 2589999998 55666632 3899999999999999999999876 57788887654
Q ss_pred --CCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCC-
Q psy1482 159 --GQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDF- 234 (627)
Q Consensus 159 --~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~- 234 (627)
..+.+|| ++.+| ++|+|..+.++|...... + ....++++++|+|+|++++| +++......
T Consensus 155 ~~~~~~~~G----vv~~d-~~g~v~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 155 PREEASAFG----VIEVD-PDGRIRGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred chHHcccCC----EEEEC-CCCCEEEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 3445666 88888 578999999987411000 0 01135789999999999986 666541111
Q ss_pred ---Cc-hhhhhcccccChhcccCeeEEEEcC-----------CCceeeecCChhhHHHHhHHHhhcccCC-CC----CCc
Q psy1482 235 ---QT-QEHFIKGVLINEEILDCRLYCSVVD-----------DIEYGISVKDWPSYQIASRDIVQRWVHP-FV----PSY 294 (627)
Q Consensus 235 ---~~-~~dfi~~il~~~~~~g~~I~~~~~~-----------~~~~~~~V~s~~~y~~a~~dil~~~~~~-~~----~~~ 294 (627)
.. ..|+++.++ ...++++|..+ .+ ||.||+++++|+++++++|.+.... +. |.+
T Consensus 219 ~~~~~~~~dii~~l~-----~~~~v~~~~~~~~~~~g~n~~~~g-~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~ 292 (407)
T PRK00844 219 DSSHDMGGDIIPRLV-----ERGRAYVYDFSTNEVPGATERDRG-YWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIY 292 (407)
T ss_pred cccccchhhHHHHHh-----ccCeEEEEEcccccccccccCCCC-EEEECCCHHHHHHHHHHHhCCCCccccCCCCCccc
Confidence 11 234444333 23478888652 37 9999999999999999999753221 11 101
Q ss_pred e---eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeee
Q psy1482 295 K---YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSV 371 (627)
Q Consensus 295 ~---~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~i 371 (627)
. ...+..+++..+. ..+..+++||++|.|+ ++.|.+|+||++|+|+++|+|.+|+|++++.||++|+|.+|+
T Consensus 293 ~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~i 367 (407)
T PRK00844 293 TSSPNLPPAKFVDGGGR----VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAI 367 (407)
T ss_pred ccCCCCCCceEecCCCc----cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeE
Confidence 0 1112222222111 2234579999999998 999999999999999999999999999999999999999999
Q ss_pred ecCCcEECCCcEECC
Q psy1482 372 LSYNTGVGEHSKLLN 386 (627)
Q Consensus 372 i~~~~~Ig~~~~i~~ 386 (627)
|+++++|+++++|+.
T Consensus 368 i~~~~~i~~~~~i~~ 382 (407)
T PRK00844 368 LDKNVVVPPGATIGV 382 (407)
T ss_pred ECCCCEECCCCEECC
Confidence 999999999988874
No 9
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.9e-43 Score=372.57 Aligned_cols=341 Identities=21% Similarity=0.250 Sum_probs=261.9
Q ss_pred EEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHh-cccccCCeeEEEE
Q psy1482 19 QAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKR-KEKSLVGTLITLI 94 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~-~~~~~~~~~v~~i 94 (627)
+|||||||.|+||+|+ .+||||+|++|+|||+|+|++|.++|+++|+|++++ +.+++.+|+++ ..|+ +++.++
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~---~~~~~~ 77 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFG---AKITYI 77 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccC---ceEEEE
Confidence 6999999999999999 999999999999999999999999999999999998 89999999986 3454 677888
Q ss_pred eCCCCcchhhhhhcccccCCc-cCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI-RNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i-~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
.+....|++++++ .+...+ +++|++++||++++.++.++++.|++. ++.+|+++.+...+.+++ ++.+
T Consensus 78 ~~~~~~G~~~al~--~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~-----~~d~ti~~~~~~~~~~~g----~~~~ 146 (353)
T TIGR01208 78 VQGEPLGLAHAVY--TARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEK-----DYDALILLTKVRDPTAFG----VAVL 146 (353)
T ss_pred ECCCCCCHHHHHH--HHHHhcCCCCEEEEECCeecCccHHHHHHHHHhc-----CCCcEEEEEECCChhhCe----EEEE
Confidence 7878899999998 455555 468999999999999999999999876 577888887766656665 6667
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccC
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDC 253 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~ 253 (627)
+ ++++|..+.++|.. + .++++++|+|+|++.+++.+.+.......+.++.+++......|.
T Consensus 147 ~-~~~~v~~~~ekp~~------~------------~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~ 207 (353)
T TIGR01208 147 E-DGKRILKLVEKPKE------P------------PSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGY 207 (353)
T ss_pred c-CCCcEEEEEECCCC------C------------CccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCC
Confidence 6 56789999887730 1 346789999999998888876432211112223333322212467
Q ss_pred eeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCC--CCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCc
Q psy1482 254 RLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF--VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331 (627)
Q Consensus 254 ~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~--~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~ 331 (627)
+|++|.++ + ||.+|+++++|.++++.++.+....+ ++......+++++++++.| +++.|.+++.||++|.|+ ++
T Consensus 208 ~v~~~~~~-g-~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~ 283 (353)
T TIGR01208 208 KVGGSKVT-G-WWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NS 283 (353)
T ss_pred eEEEEEeC-c-EEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-Cc
Confidence 89999998 7 99999999999999999998532222 2223445566777777777 666776777777777776 33
Q ss_pred ee-eeeEECCCCEECCCcEEeceEECCCCEeCCC-cEEeeeeecCCcEECCCcEECC--CCEECCCcEEC
Q psy1482 332 QL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDN-CEVRLSVLSYNTGVGEHSKLLN--GCLLGTGVLIG 397 (627)
Q Consensus 332 ~I-~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~-~~i~~~ii~~~~~Ig~~~~i~~--~~ii~~~~~ig 397 (627)
.| .+++||++|.|+ +|.|.+|+|+++++|+.+ +++.+++|++++.|++++.+.. +.++|.+++|+
T Consensus 284 ~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 284 YIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred EECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 44 367777777776 577778889999999887 4888888998888888888874 35677666654
No 10
>KOG1460|consensus
Probab=100.00 E-value=2.1e-44 Score=341.91 Aligned_cols=322 Identities=17% Similarity=0.243 Sum_probs=265.6
Q ss_pred ceEEEEEeCC--CCCCCCcC--CCCccccccCCeehHHHHHHHHHh-CCCcEEEEEecCChHHHHHHHHhcccccCCeeE
Q psy1482 17 VLQAVIVTDT--FNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHL-SGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLI 91 (627)
Q Consensus 17 ~~~aVIlA~g--~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v 91 (627)
.++||||.+| .||||||| +.||||+||+|+|||+|-|+.+.+ .|+.+|+++--|..+.+.+|+...... .++.|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e-~~~pv 80 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQE-FKVPV 80 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhh-cccch
Confidence 5789999999 59999999 999999999999999999999976 689999998888888899998763211 23668
Q ss_pred EEEeCCCCcchhhhhhcccccCCc--c--CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCc
Q psy1482 92 TLIVSDGCYSFGDVMRDLDGKAVI--R--NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKE 167 (627)
Q Consensus 92 ~~i~~~~~~~~gdalr~l~~~~~i--~--~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~ 167 (627)
.|..++.+.|+|+.|..+ ++.| + +.|+|+++|+.++++|..|++.|+.. +..+||+.+++++.+.. +
T Consensus 81 rYL~E~~plGtaGgLyhF--rdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~-----g~~~tll~tkvs~e~as--n 151 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHF--RDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRY-----GGIGTLLVTKVSREQAS--N 151 (407)
T ss_pred hhhccCCCCCcccceeeh--hhHHhcCCCceEEEEecceecCCcHHHHHHHHhhc-----CCceEEEEEEecHhHhh--c
Confidence 899899999999999965 4434 2 56999999999999999999999876 69999999988754322 3
Q ss_pred ceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCC--------------
Q psy1482 168 DLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFD-------------- 233 (627)
Q Consensus 168 ~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd-------------- 233 (627)
.+-++-|+.+++|+||.+||. .+-+|.++||||+|+|++|..+.+-+.
T Consensus 152 fG~lV~dP~t~evlHYveKPs------------------TfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~ 213 (407)
T KOG1460|consen 152 FGCLVEDPSTGEVLHYVEKPS------------------TFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPL 213 (407)
T ss_pred cCeeeecCCcCceEEeecCcc------------------hhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 347778999999999999985 336799999999999999986654221
Q ss_pred CCc-hhhhhc---ccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcc--cCCC-C---CCc-eeecCeEE
Q psy1482 234 FQT-QEHFIK---GVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRW--VHPF-V---PSY-KYRRNNIY 302 (627)
Q Consensus 234 ~~~-~~dfi~---~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~--~~~~-~---~~~-~~~~~~~~ 302 (627)
++. +.||++ +++.. .+..+.+|+|... + +|..+.++.+-+.+++.+|+++ ++|. + |.. ..+.+++|
T Consensus 214 l~~g~~d~irLeqDvlsp-Lag~k~lY~y~t~-~-fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVy 290 (407)
T KOG1460|consen 214 LQPGPADFIRLEQDVLSP-LAGSKQLYAYETT-D-FWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVY 290 (407)
T ss_pred cCCCccceEEeechhhhh-hcCCCceEEEecc-c-HHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeE
Confidence 112 345543 23322 2446789999998 5 9999999999899999999843 4442 2 222 35788999
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEee
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRL 369 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~ 369 (627)
|+++++++++++||+|+.||++++||+|+.|.+|+|-++|.|.+|+.+-+|+||.++.||..+++++
T Consensus 291 IhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 291 IHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred EcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
No 11
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.2e-44 Score=382.00 Aligned_cols=334 Identities=16% Similarity=0.236 Sum_probs=229.8
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChH-HHHHHHHh-cccccC---
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVN-QIRELVKR-KEKSLV--- 87 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~-~i~~~l~~-~~~~~~--- 87 (627)
+.|+|||||+|+|+||+|| .+||||+||+|+ |||+|+|++|..+|+++|+|+++++.+ +|++|+++ ..|+..
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3699999999999999999 999999999999 999999999999999999999999876 99999976 346511
Q ss_pred -CeeEEEEeCCCCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC--C
Q psy1482 88 -GTLITLIVSDGCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG--Q 160 (627)
Q Consensus 88 -~~~v~~i~~~~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~--~ 160 (627)
...+.+..+....++|++.....++++++ ++|+|++||++++.+|.+++++|+++ ++.+|+++.++. .
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~v~~~~ 155 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEET-----GKDITVVYKKVKPAD 155 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHc-----CCCEEEEEEecCHHH
Confidence 01122222334555555432224455552 57999999999999999999999876 588999988765 3
Q ss_pred CCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCCchhh
Q psy1482 161 SKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQTQEH 239 (627)
Q Consensus 161 ~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~~~~d 239 (627)
+.+++ .++.++ +++++..+.+++. +. ...++++|+|+|+++++ +++.+..... ..+
T Consensus 156 ~~~~g---~vv~~~-~~g~v~~~~~~~~-------~~-----------~~~~~~~Giyi~~~~~l~~~l~~~~~~~-~~~ 212 (369)
T TIGR02092 156 ASEYD---TILRFD-ESGKVKSIGQNLN-------PE-----------EEENISLDIYIVSTDLLIELLYECIQRG-KLT 212 (369)
T ss_pred ccccC---cEEEEc-CCCCEEeccccCC-------CC-----------CcceeeeeEEEEEHHHHHHHHHHHhhcC-ccc
Confidence 34453 355666 4678877644321 00 12346799999999966 4554322111 112
Q ss_pred hhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCCceeecCeEE----ECCCeEECCCCEE
Q psy1482 240 FIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIY----LAEDVLIGKTSVL 315 (627)
Q Consensus 240 fi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~~~~~~~~~~----i~~~~~i~~~~~i 315 (627)
++.+++.. .+.+.++++|..+ + ||.+|+++++|.+++++++++|..+.... ...+.++ +.+.+.|++++.|
T Consensus 213 ~~~d~i~~-~~~~~~v~~~~~~-g-~w~dIgt~~~l~~a~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~p~~i~~~~~i 287 (369)
T TIGR02092 213 SLEELIRE-NLKELNINAYEYT-G-YLANINSVKSYYKANMDLLDPQNFQSLFY--SSQGPIYTKVKDEPPTYYAENSKV 287 (369)
T ss_pred cHHHHHHH-HhccCcEEEEecC-C-ceeEcCCHHHHHHHHHHHhCCcchhhhcC--CCCCceeeccCCCCCcEEcCCCEE
Confidence 22223222 1335689999988 6 99999999999999999999876432110 0011111 2244555666665
Q ss_pred cCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEEC
Q psy1482 316 KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLL 385 (627)
Q Consensus 316 ~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 385 (627)
++++||++|+|+ +.|.+|+||++|.|+++|+|.+|+|++++.|++++.+.+|+||++++|++++++.
T Consensus 288 -~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 288 -ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred -EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 466667777775 3466777777777777777777777777777777777777777777777666664
No 12
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.8e-43 Score=375.80 Aligned_cols=343 Identities=15% Similarity=0.207 Sum_probs=253.1
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCee-hHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccC----C
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKC-LLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLV----G 88 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~p-li~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~----~ 88 (627)
..++|||||||+||||+|+ .+||||+||+|+| ||+|+|++|..+|+++|+|+++++.+++.+|+++ .|... .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQR-GWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHh-hhcccccCCC
Confidence 4589999999999999999 8999999999996 9999999999999999999999999999999975 35310 1
Q ss_pred eeEEEEe-------CCCCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeec
Q psy1482 89 TLITLIV-------SDGCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKK 157 (627)
Q Consensus 89 ~~v~~i~-------~~~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~ 157 (627)
..+.++. ++...|+|+|++ .+..++. ++|+|++||++++.++.++++.|+++ ++.+|+++.+
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~--~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~-----~~~~tl~~~~ 165 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVY--QNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVES-----GADCTVACLE 165 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHH--HHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHc-----CCCEEEEEEe
Confidence 1122221 223589999998 5556664 45999999999999999999999876 5778888766
Q ss_pred c--CCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcC-CC
Q psy1482 158 K--GQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDN-FD 233 (627)
Q Consensus 158 ~--~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~-fd 233 (627)
. ..+.+|| ++.+| ++++|..|.|+|..... .+. ...++++++|+|+|++++| .++.+. ..
T Consensus 166 ~~~~~~~~yG----~v~~d-~~~~V~~~~EKp~~~~~--~~~---------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~ 229 (425)
T PRK00725 166 VPREEASAFG----VMAVD-ENDRITAFVEKPANPPA--MPG---------DPDKSLASMGIYVFNADYLYELLEEDAED 229 (425)
T ss_pred cchhhcccce----EEEEC-CCCCEEEEEECCCCccc--ccc---------CccceEEEeeEEEEeHHHHHHHHHHhhcC
Confidence 5 3445665 88888 57899999998741111 000 0135689999999999986 455431 11
Q ss_pred CCchhhhhcccccChhcccCeeEEEEcCC----------CceeeecCChhhHHHHhHHHhhcccCC-CC----CCce---
Q psy1482 234 FQTQEHFIKGVLINEEILDCRLYCSVVDD----------IEYGISVKDWPSYQIASRDIVQRWVHP-FV----PSYK--- 295 (627)
Q Consensus 234 ~~~~~dfi~~il~~~~~~g~~I~~~~~~~----------~~~~~~V~s~~~y~~a~~dil~~~~~~-~~----~~~~--- 295 (627)
.....+|..+++... +...+|++|..++ + ||.+|+++++|.+++++++...... +. |-+.
T Consensus 230 ~~~~~~~~~dii~~l-~~~~~v~~~~~~g~~~~~~~~~~g-yw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~ 307 (425)
T PRK00725 230 PNSSHDFGKDIIPKI-VEEGKVYAHPFSDSCVRSDPEEEP-YWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQE 307 (425)
T ss_pred CCccchhhHHHHHHH-hccCcEEEEEecCCccccccccCC-eEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCC
Confidence 112234444444222 3445799998853 6 9999999999999999998653211 00 0000
Q ss_pred eecCeEEECCCeEECCCCE-EcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecC
Q psy1482 296 YRRNNIYLAEDVLIGKTSV-LKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSY 374 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~-i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~ 374 (627)
...+..++. .+.++. +..+++||++|.| ++|.|++|+||++|.||++|.|.+|+|+++|.||++|+|.+|+|++
T Consensus 308 ~~~~~~~~~----~~~~~~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~ 382 (425)
T PRK00725 308 QLPPAKFVF----DRSGRRGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDR 382 (425)
T ss_pred CCCCCeEec----cCCCCcceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECC
Confidence 011111211 112211 2237999999999 7999999999999999999999999999999999999999999999
Q ss_pred CcEECCCcEECCCCE
Q psy1482 375 NTGVGEHSKLLNGCL 389 (627)
Q Consensus 375 ~~~Ig~~~~i~~~~i 389 (627)
+|.|+++++|+.++.
T Consensus 383 ~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 383 GCVIPEGMVIGEDPE 397 (425)
T ss_pred CCEECCCCEECCCCC
Confidence 999999888886654
No 13
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-43 Score=351.47 Aligned_cols=337 Identities=17% Similarity=0.196 Sum_probs=266.0
Q ss_pred ceEEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHh-cccccCCe--e
Q psy1482 17 VLQAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKR-KEKSLVGT--L 90 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~-~~~~~~~~--~ 90 (627)
.+-|+|||+|.|+||.|| .++||-+|++|+ .||+++|.++..+|+.+|.|++.+....+.+||+. ..|..... .
T Consensus 5 ~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~ 84 (393)
T COG0448 5 NVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGG 84 (393)
T ss_pred ceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCc
Confidence 467999999999999999 999999999999 99999999999999999999999988899999987 35743111 2
Q ss_pred EEEEeC-------CCCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC
Q psy1482 91 ITLIVS-------DGCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG 159 (627)
Q Consensus 91 v~~i~~-------~~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~ 159 (627)
+.++.. ....|+++|++ +...++. +.+++++||+++++|+..+++.|.+. ++.+|+++.+++
T Consensus 85 v~ilp~~~~~~~~~wy~Gtadai~--Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~-----gadiTv~~~~Vp 157 (393)
T COG0448 85 VFILPAQQREGGERWYEGTADAIY--QNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIES-----GADVTVAVKEVP 157 (393)
T ss_pred EEEeCchhccCCCcceeccHHHHH--HhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEEECC
Confidence 333331 25578999988 4444443 56999999999999999999999997 799999999987
Q ss_pred CC--CCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCC-CCC
Q psy1482 160 QS--KSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNF-DFQ 235 (627)
Q Consensus 160 ~~--~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~f-d~~ 235 (627)
.. +++| ++.+| +++||+.|.|||.. . |+ .+.|+++|||||+.++|. +|.+.. +.+
T Consensus 158 ~~eas~fG----im~~D-~~~~i~~F~eKp~~----~-~~-----------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 158 REEASRFG----VMNVD-ENGRIIEFVEKPAD----G-PP-----------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred hHhhhhcC----ceEEC-CCCCEEeeeeccCc----C-Cc-----------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 54 4454 89999 89999999999851 0 10 223899999999999876 555432 224
Q ss_pred chhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCC-ceeecCeEEECCCeEECCCCE
Q psy1482 236 TQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPS-YKYRRNNIYLAEDVLIGKTSV 314 (627)
Q Consensus 236 ~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~-~~~~~~~~~i~~~~~i~~~~~ 314 (627)
+..||.+.++......| .+++|..+ | ||.+|+|.++|+++|+++++.-....+.+ .-.+.......+.+++..++.
T Consensus 217 ~~~DfgkdiIp~~~~~~-~v~AY~f~-g-Yw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~ 293 (393)
T COG0448 217 SSHDFGKDIIPKLLERG-KVYAYEFS-G-YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSE 293 (393)
T ss_pred ccccchHHHHHHHHhcC-CEEEEecc-c-hhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCce
Confidence 46677777765442334 49999999 7 99999999999999999998322110110 000111112345566666666
Q ss_pred EcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCC
Q psy1482 315 LKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNG 387 (627)
Q Consensus 315 i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 387 (627)
+. ++.|+.||.|.. .|.+|+|+.+++|+.+|.|.+|+|+++|.||+||+|.++||..||.|++|++|+..
T Consensus 294 v~-nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 294 VS-NSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred Ee-eeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 53 889999999975 89999999999999999999999999999999999999999999999999999965
No 14
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.4e-41 Score=359.90 Aligned_cols=337 Identities=18% Similarity=0.237 Sum_probs=241.5
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCC---eeEEE
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVG---TLITL 93 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~---~~v~~ 93 (627)
|||||||+|+||+|+ .+|||||||+|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.. .|.... ..+++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQR-GWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHh-ccCccCccCCCEEE
Confidence 699999999999999 899999999999 89999999999999999999999999999999985 353111 12333
Q ss_pred Ee-------CCCCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC--C
Q psy1482 94 IV-------SDGCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG--Q 160 (627)
Q Consensus 94 i~-------~~~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~--~ 160 (627)
+. ++...|++++++ .+...++ ++|+|++||++++.++.++++.|++. ++.+|+++.+.+ .
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~--~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~-----~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVY--QNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIES-----GADVTIACIPVPRKE 152 (361)
T ss_pred eCCcccCCCCccccCcHHHHH--HHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHc-----CCCEEEEEEecChHh
Confidence 21 123478999988 3344442 56999999999999999999999765 466777776543 3
Q ss_pred CCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcC-CCCCchh
Q psy1482 161 SKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDN-FDFQTQE 238 (627)
Q Consensus 161 ~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~-fd~~~~~ 238 (627)
...++ ++.+| ++++|..+.++|.. |... ... ...+++++|+|+|+|+++ .++... .......
T Consensus 153 ~~~~g----~v~~d-~~~~v~~~~ekp~~------~~~~-~~~----~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~ 216 (361)
T TIGR02091 153 ASRFG----VMQVD-EDGRIVDFEEKPAN------PPSI-PGM----PDFALASMGIYIFDKDVLKELLEEDADDPESSH 216 (361)
T ss_pred ccccc----EEEEC-CCCCEEEEEECCCC------cccc-ccc----ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccc
Confidence 34454 88887 57899999987631 1000 000 023478999999999987 455431 1111122
Q ss_pred hhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCC-CCC-ceeecCeEEECCCeEECCCCEEc
Q psy1482 239 HFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF-VPS-YKYRRNNIYLAEDVLIGKTSVLK 316 (627)
Q Consensus 239 dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~ 316 (627)
+|..+++.. .+...++++|.++ + +|.+|+++++|.+++++++++..... ... ........++.+.+.|++++.+
T Consensus 217 ~~~~d~l~~-l~~~~~v~~~~~~-~-~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i- 292 (361)
T TIGR02091 217 DFGKDIIPR-ALEEGSVQAYLFS-G-YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV- 292 (361)
T ss_pred ccHHHHHHH-HhhcCceEEEeeC-C-EEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-
Confidence 233333322 2344589999998 7 99999999999999999998753211 110 1011112234455666666654
Q ss_pred CCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEEC
Q psy1482 317 QQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLL 385 (627)
Q Consensus 317 ~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 385 (627)
++++||++|.|+++ .|.+++||++|.|+++|+|.+|+|++++.||.+|+|.+|+||+++.|++++.|+
T Consensus 293 ~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 293 VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 46788888888876 778888888888888888888888888888888888888888888777777765
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-40 Score=360.47 Aligned_cols=334 Identities=13% Similarity=0.167 Sum_probs=253.0
Q ss_pred CCceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEE
Q psy1482 15 DEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
-..|+|||||||.|+||+| .+||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+++++|+.. ..+.++
T Consensus 5 ~~~~~avILAaG~gtRl~~-~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-------~~i~~v 76 (481)
T PRK14358 5 TRPLDVVILAAGQGTRMKS-ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-------SGVAFA 76 (481)
T ss_pred cCCceEEEECCCCCCcCCC-CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-------CCcEEe
Confidence 3579999999999999998 68999999999999999999999999999999999988999999864 236677
Q ss_pred eCCCCcchhhhhhcccccCCc---cCCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI---RNDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i---~~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
.++...|++++++. +...+ .++|++++||+ +...++..+++.|++. ++.+|+++.+.+++++||
T Consensus 77 ~~~~~~Gt~~al~~--~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-----~~~~ti~~~~~~~~~~yG---- 145 (481)
T PRK14358 77 RQEQQLGTGDAFLS--GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-----GSAMTILTGELPDATGYG---- 145 (481)
T ss_pred cCCCcCCcHHHHHH--HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEEEcCCCCCce----
Confidence 77777899998873 33344 35799999997 5677899999999776 578888888877777787
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCc-hhhhhcccccCh
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQT-QEHFIKGVLINE 248 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~-~~dfi~~il~~~ 248 (627)
++.+| ++++|..+.|+|+.. .. +...+++++|+|+|++++++++..-..... .+.++.+++...
T Consensus 146 ~v~~d-~~g~v~~~~Ek~~~~------~~--------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~ 210 (481)
T PRK14358 146 RIVRG-ADGAVERIVEQKDAT------DA--------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLY 210 (481)
T ss_pred EEEEC-CCCCEEEEEECCCCC------hh--------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHH
Confidence 88888 578999999987411 00 002346789999999666554432111111 122233333222
Q ss_pred hcccCeeEEEEcCCCceeeecCChhhHHHHhHH-HhhcccC---------CCCCCceeecCeEEECCCeEECCCCEEcCC
Q psy1482 249 EILDCRLYCSVVDDIEYGISVKDWPSYQIASRD-IVQRWVH---------PFVPSYKYRRNNIYLAEDVLIGKTSVLKQQ 318 (627)
Q Consensus 249 ~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~d-il~~~~~---------~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~ 318 (627)
...|.++++|... + +|..++.-..|+.++.+ ++++..+ ...|...+..++++||+++.|+++|.|.++
T Consensus 211 ~~~g~~i~~~~~~-~-~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~ 288 (481)
T PRK14358 211 RAGGAQVRAFKLS-D-PDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQ 288 (481)
T ss_pred HHCCCeEEEEecC-C-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCC
Confidence 2346789999887 4 66666655555333332 4433211 112334455788899999999999999999
Q ss_pred cEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEE
Q psy1482 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKL 384 (627)
Q Consensus 319 ~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i 384 (627)
+.||++|.|+++|.|++|+||++|.|+++++|.+++|++++.||.++.|. +++||+++.|++++.|
T Consensus 289 v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 289 TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 99999999999999999999999999999999999999999999999995 7888888888886554
No 16
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-39 Score=355.98 Aligned_cols=327 Identities=17% Similarity=0.226 Sum_probs=247.3
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.++|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|..+|+++++|++++..+++.+|+.+. ..+.++.+
T Consensus 3 ~~~avIlAaG~g~Rl~~-~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~------~~i~~~~~ 75 (459)
T PRK14355 3 NLAAIILAAGKGTRMKS-DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD------GDVSFALQ 75 (459)
T ss_pred cceEEEEcCCCCcccCC-CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC------CceEEEec
Confidence 58999999999999987 789999999999999999999999999999999999999999998752 13666667
Q ss_pred CCCcchhhhhhcccccCCcc---CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEE
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR---NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIV 171 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~---~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv 171 (627)
....+++++++ .+...+. ++|++++||+ +.+.++..+++.|+.. ++.+|++..+...+.+|+ .+
T Consensus 76 ~~~~Gt~~al~--~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-----~~~~~v~~~~~~~~~~~g----~v 144 (459)
T PRK14355 76 EEQLGTGHAVA--CAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-----GAAVTVLTARLENPFGYG----RI 144 (459)
T ss_pred CCCCCHHHHHH--HHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-----CCcEEEEEEEcCCCCcCC----EE
Confidence 77889999988 4455553 5799999998 5678899999998764 577888777766666666 67
Q ss_pred EEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCC-chhhhhcccccChh
Q psy1482 172 AYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQ-TQEHFIKGVLINEE 249 (627)
Q Consensus 172 ~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~-~~~dfi~~il~~~~ 249 (627)
.+| ++++|..+.++|... +.. ..++++++|+|+|+++++ .++....... ..+.++.+++....
T Consensus 145 ~~d-~~g~v~~~~ek~~~~-----~~~---------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~ 209 (459)
T PRK14355 145 VRD-ADGRVLRIVEEKDAT-----PEE---------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAA 209 (459)
T ss_pred EEc-CCCCEEEEEEcCCCC-----hhH---------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHH
Confidence 777 578999998765200 000 024678899999999864 5554321110 12223334443322
Q ss_pred cccCeeEEEEcCCCce--eeecCChhhHHHHhHHHhhcccCC-------CC-CCceeecCeEEECCCeEECCCCEEcCCc
Q psy1482 250 ILDCRLYCSVVDDIEY--GISVKDWPSYQIASRDIVQRWVHP-------FV-PSYKYRRNNIYLAEDVLIGKTSVLKQQV 319 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~--~~~V~s~~~y~~a~~dil~~~~~~-------~~-~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 319 (627)
..|.++++|.++ + | |.+++++++|.++++.++.+.... .+ |...++.+++++++++.|+++|.|++++
T Consensus 210 ~~g~~v~~~~~~-~-~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~ 287 (459)
T PRK14355 210 AEGLRCLAFPVA-D-PDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDT 287 (459)
T ss_pred HCCCeEEEEEcC-C-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCC
Confidence 346789999997 4 5 999999999999977555432110 11 2234567788889999999999999999
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEE
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGV 378 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~I 378 (627)
+||++|.|+++|+|++++||++|+|+.+|+|.+++|++++.||.+++|. ++.|++++.|
T Consensus 288 ~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i 347 (459)
T PRK14355 288 RIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347 (459)
T ss_pred EECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 9999999999999999999999999999999999998888887776663 3444444333
No 17
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-39 Score=324.76 Aligned_cols=358 Identities=20% Similarity=0.274 Sum_probs=286.2
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.|.+||||||.||||+. ..||.|.||+|+||++|+|+.....+.+++.+|+++.++++++.+.+. .++.++.|
T Consensus 2 ~~~~vILAAGkGTRMkS-~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~------~~v~~v~Q 74 (460)
T COG1207 2 SLSAVILAAGKGTRMKS-DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER------DDVEFVLQ 74 (460)
T ss_pred CceEEEEecCCCccccC-CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc------cCceEEEe
Confidence 57899999999999998 899999999999999999999999999999999999999999999762 25889999
Q ss_pred CCCcchhhhhhcccccCCc-c---CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceE
Q psy1482 97 DGCYSFGDVMRDLDGKAVI-R---NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLI 170 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i-~---~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~v 170 (627)
....|||+|+. .+++.+ + ++.||++||+ +....|..+++.|... ++.+|++.....+|..|| .
T Consensus 75 ~eqlGTgHAV~--~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~-----~~~~tvLt~~~~dP~GYG----R 143 (460)
T COG1207 75 EEQLGTGHAVL--QALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAH-----GAAATVLTAELDDPTGYG----R 143 (460)
T ss_pred cccCChHHHHH--hhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhc-----CCceEEEEEEcCCCCCcc----e
Confidence 99999999998 566666 2 4699999998 4556678899999877 588999988888888887 7
Q ss_pred EEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCCCCCc--hhhhhcccccC
Q psy1482 171 VAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNFDFQT--QEHFIKGVLIN 247 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~fd~~~--~~dfi~~il~~ 247 (627)
++.+ ++|+|..+.|..+.+..- -.-..+++|+|+|....|. +|.. ..-.. .+-|+.+++.-
T Consensus 144 Ivr~-~~g~V~~IVE~KDA~~ee--------------k~I~eiNtGiy~f~~~~L~~~L~~-l~nnNaqgEYYLTDvI~i 207 (460)
T COG1207 144 IVRD-GNGEVTAIVEEKDASEEE--------------KQIKEINTGIYAFDGAALLRALPK-LSNNNAQGEYYLTDVIAI 207 (460)
T ss_pred EEEc-CCCcEEEEEEcCCCCHHH--------------hcCcEEeeeEEEEcHHHHHHHHHH-hccccccCcEeHHHHHHH
Confidence 7777 678999999987622111 1345789999999987554 3332 22222 34456666644
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcc--------cCCCCCCceeecCeEEECCCeEECCCCEEcCCc
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRW--------VHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQV 319 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~--------~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 319 (627)
....|.+|.++.+++......|++-..+..+.+-+.+|. ..-..|+..++++.+.+++++.|.+++.|.+++
T Consensus 208 ~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t 287 (460)
T COG1207 208 ARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNT 287 (460)
T ss_pred HHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeE
Confidence 334688999999985435678888877766655443332 222457788999999999999999999999999
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCC-----
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTG----- 393 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~----- 393 (627)
.||++|.||++|+|.+|.||+|+.|..+++|.+|.|++++.||+.++++ ++.|+++++||..+-+. ++.||.+
T Consensus 288 ~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK-~a~ig~gsKa~H 366 (460)
T COG1207 288 VIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK-KATIGKGSKAGH 366 (460)
T ss_pred EECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEe-cccccCCccccc
Confidence 9999999999999999999999999999999999999999999999996 78899988888877766 4555553
Q ss_pred ------cEECCCcEECCCcccC
Q psy1482 394 ------VLIGNKTCLSGVKLPS 409 (627)
Q Consensus 394 ------~~ig~~~~v~~~~~v~ 409 (627)
+.||.++-|++|++..
T Consensus 367 LtYlGDA~iG~~~NiGAGtItc 388 (460)
T COG1207 367 LTYLGDAEIGENVNIGAGTITC 388 (460)
T ss_pred eeeeccceecCCceeccceEEE
Confidence 4455555556655544
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.4e-39 Score=350.05 Aligned_cols=330 Identities=14% Similarity=0.169 Sum_probs=246.7
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
..+.|||||+|.|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+++.... ..+.++.
T Consensus 3 ~~~~avILAaG~gtRm~~-~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-----~~~~~~~ 76 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS-DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA-----PEVDIAV 76 (482)
T ss_pred CCceEEEEcCCCCCcCCC-CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC-----CccEEEe
Confidence 357899999999999998 7899999999999999999999999999999999988889999887521 2355666
Q ss_pred CCCCcchhhhhhcccccCCcc----CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 96 SDGCYSFGDVMRDLDGKAVIR----NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i~----~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
++...|++++++. +...+. ++|++++||. +...++..+++.|++. ++.+|++..+..++..|+
T Consensus 77 ~~~~~Gt~~si~~--al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~-----~~~~~v~~~~~~~p~~yg---- 145 (482)
T PRK14352 77 QDEQPGTGHAVQC--ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE-----GNAVTVLTTTLDDPTGYG---- 145 (482)
T ss_pred CCCCCCcHHHHHH--HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEeecCCCCCCC----
Confidence 7778899998873 333342 4699999998 3567899999998765 467777777776666776
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCCCCC-chhhhhcccccC
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNFDFQ-TQEHFIKGVLIN 247 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~fd~~-~~~dfi~~il~~ 247 (627)
++..| ++++|..+.|+|.. +.. +...+++++|+|+|++++|. ++....... ..+.++.+++..
T Consensus 146 ~~~~~-~~g~V~~~~EKp~~------~~~--------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~ 210 (482)
T PRK14352 146 RILRD-QDGEVTAIVEQKDA------TPS--------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAI 210 (482)
T ss_pred EEEEC-CCCCEEEEEECCCC------CHH--------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHH
Confidence 66666 57899999998741 110 01235689999999999985 333221111 012223344332
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhH------HHHhHHHhhcccCC----CCCCceeecCeEEECCCeEECCCCEEcC
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSY------QIASRDIVQRWVHP----FVPSYKYRRNNIYLAEDVLIGKTSVLKQ 317 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y------~~a~~dil~~~~~~----~~~~~~~~~~~~~i~~~~~i~~~~~i~~ 317 (627)
....|.+|++|.++ + ||.+++.++.| ..+++.++..+... ..|...++.++++|++++.|++++.|.+
T Consensus 211 l~~~g~~V~~~~~~-g-~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~ 288 (482)
T PRK14352 211 AREAGHRVGAHHAD-D-SAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLG 288 (482)
T ss_pred HHHCCCeEEEEecC-C-cceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEee
Confidence 22346789999987 6 99999988777 55666666655322 1234567889999999999999999999
Q ss_pred CcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECC
Q psy1482 318 QVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGE 380 (627)
Q Consensus 318 ~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~ 380 (627)
+++||++|.|+++|+|.+++||++|.|+. +.+.+++|++++.||.+|.+. +++||+++.||.
T Consensus 289 ~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~ 351 (482)
T PRK14352 289 RTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGA 351 (482)
T ss_pred cCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECC
Confidence 99999999999999999888888888864 667777777777777777774 566665555553
No 19
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.9e-38 Score=346.28 Aligned_cols=336 Identities=19% Similarity=0.209 Sum_probs=251.7
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|+|||||||.|+||+| .+||+|+|++|+|||+|+|+.|..+|+++++|++++..+.+++++.+ | .+.++.+.
T Consensus 1 m~aiIlAaG~g~R~~~-~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--~-----~i~~~~~~ 72 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS-DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--R-----DVNWVLQA 72 (451)
T ss_pred CeEEEEcCCCCcccCC-CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--C-----CcEEEEcC
Confidence 7999999999999998 79999999999999999999999999999999999988999999875 2 24556566
Q ss_pred CCcchhhhhhcccccCCcc--CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 98 GCYSFGDVMRDLDGKAVIR--NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i~--~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
...|++++++ .+...+. ++|++++||. +...++..+++.|.+. .++++..+..++..++ .+.+
T Consensus 73 ~~~G~~~ai~--~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~g----~v~~ 139 (451)
T TIGR01173 73 EQLGTGHAVL--QALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN-------GITLLTAKLPDPTGYG----RIIR 139 (451)
T ss_pred CCCchHHHHH--HHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC-------CEEEEEEecCCCCCCC----EEEE
Confidence 6678888888 4455553 4699999998 4566888998888642 2555555555555565 6777
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCCc-hhhhhcccccChhcc
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQT-QEHFIKGVLINEEIL 251 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~~-~~dfi~~il~~~~~~ 251 (627)
| ++++|..+.+++... +.+ ...+++++|+|+|++++| .++.+...... .+.++..++......
T Consensus 140 d-~~g~v~~~~ek~~~~-----~~~---------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~ 204 (451)
T TIGR01173 140 E-NDGKVTAIVEDKDAN-----AEQ---------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVAD 204 (451)
T ss_pred c-CCCCEEEEEEcCCCC-----hHH---------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHC
Confidence 7 578899998876310 000 012467899999999985 44544222111 112233333222235
Q ss_pred cCeeEEEEcCCCce--eeecCChhhHHHHhHHHhhccc----CC----CCCCceeecCeEEECCCeEECCCCEEcCCcEE
Q psy1482 252 DCRLYCSVVDDIEY--GISVKDWPSYQIASRDIVQRWV----HP----FVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVI 321 (627)
Q Consensus 252 g~~I~~~~~~~~~~--~~~V~s~~~y~~a~~dil~~~~----~~----~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 321 (627)
|.++++|... + + |.+++++++|..+...+..+.. .+ ..|...++.+++.+|+++.|+++++|+++++|
T Consensus 205 g~~v~~~~~~-~-~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~i 282 (451)
T TIGR01173 205 GETVRAVQVD-D-SDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKI 282 (451)
T ss_pred CCeEEEEEcC-C-hhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEE
Confidence 6789999887 4 5 8999999998877654433211 11 11334567788889999999999999999999
Q ss_pred CCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECC
Q psy1482 322 GEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGT 392 (627)
Q Consensus 322 g~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~ 392 (627)
|++|.|+++|.|++++||++|.|+++|+|.+++|++++.||++++|. +++|+++|+||+++.+. +++||.
T Consensus 283 g~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~-~~~ig~ 353 (451)
T TIGR01173 283 GDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK-NARIGK 353 (451)
T ss_pred CCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec-CcEECC
Confidence 99999999999999999999999999999999999999999999996 68888888888876554 344444
No 20
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.5e-38 Score=345.01 Aligned_cols=322 Identities=15% Similarity=0.187 Sum_probs=219.4
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.|+|||||+|.|+||++ .+||+|+|++|+|||+|++++|..+|+++++|++++..+++++++... ++.++.+
T Consensus 5 ~~~aiIlAaG~gtRl~~-~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-------~~~~i~~ 76 (456)
T PRK09451 5 AMSVVILAAGKGTRMYS-DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-------PLNWVLQ 76 (456)
T ss_pred CceEEEEcCCCCCcCCC-CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-------CcEEEEC
Confidence 58999999999999986 789999999999999999999999999999999998888999888641 3566767
Q ss_pred CCCcchhhhhhcccccCCcc--CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR--NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~--~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
....|++++++. +..++. ++|++++||. +.+.++..+++.|++. + ++++..+...+.+|+ ++
T Consensus 77 ~~~~Gt~~al~~--a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-----~--~~i~~~~~~~~~~yG----~v- 142 (456)
T PRK09451 77 AEQLGTGHAMQQ--AAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQG-----G--IGLLTVKLDNPTGYG----RI- 142 (456)
T ss_pred CCCCCcHHHHHH--HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC-----C--EEEEEEEcCCCCCce----EE-
Confidence 778899999884 444443 5699999998 5677899998877542 2 334445555556676 55
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCCCCCc-hhhhhcccccChhc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNFDFQT-QEHFIKGVLINEEI 250 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~fd~~~-~~dfi~~il~~~~~ 250 (627)
.+ ++++|..+.|+|... +. ....+++++|+|+|+++.|. ++........ .+.++.+++.....
T Consensus 143 ~~-~~g~V~~~~EKp~~~-----~~---------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~ 207 (456)
T PRK09451 143 TR-ENGKVVGIVEQKDAT-----DE---------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQ 207 (456)
T ss_pred Ee-cCCeEEEEEECCCCC-----hH---------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHH
Confidence 44 478999999987410 00 01245789999999998775 4543222111 23344444433323
Q ss_pred ccCeeEEEEcC-----CCce--eeecCChhhHHHHhH--HHhhcccCCCCCCceeecCeEEECCCeEECCCCEEcCCcEE
Q psy1482 251 LDCRLYCSVVD-----DIEY--GISVKDWPSYQIASR--DIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVI 321 (627)
Q Consensus 251 ~g~~I~~~~~~-----~~~~--~~~V~s~~~y~~a~~--dil~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 321 (627)
.|.+|++|... .| | |.+++++++|+.++. .++..-...+-|......+++.+++++.|+++|.|.++++|
T Consensus 208 ~g~~v~~~~~~~~~~~~G-~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~i 286 (456)
T PRK09451 208 EGREIVAVHPQRLSEVEG-VNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTL 286 (456)
T ss_pred CCCeEEEEecCCHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEE
Confidence 56789998632 14 5 567999999998864 23332111112222223455667777777777777767777
Q ss_pred CCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCc
Q psy1482 322 GEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNT 376 (627)
Q Consensus 322 g~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~ 376 (627)
|++|.|+++|.|.+++||++|.|+++|.|.+|+|++++.||+++.|. ++.|++++
T Consensus 287 g~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~ 342 (456)
T PRK09451 287 GNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGA 342 (456)
T ss_pred CCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCc
Confidence 77777777777777777777777766666666666666666655553 33333333
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.7e-38 Score=343.29 Aligned_cols=343 Identities=13% Similarity=0.113 Sum_probs=251.5
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.+.|||||||.|+||++ .+||+|+|++|+|||+|+++.|...|+++|+|++++..+.+++++.. ..+.++.+
T Consensus 5 ~~~aiILAaG~gtR~~~-~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-------~~~~~v~~ 76 (456)
T PRK14356 5 TTGALILAAGKGTRMHS-DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD-------EDARFVLQ 76 (456)
T ss_pred ceeEEEEcCCCCccCCC-CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc-------cCceEEEc
Confidence 68999999999999985 78999999999999999999999999999999999988888888754 23566777
Q ss_pred CCCcchhhhhhcccccCCcc----CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceE
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR----NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLI 170 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~----~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~v 170 (627)
+...|++++++. +..++. ++|++++||+ +...++..+++.|+ ++.+|++..+...+..|+ +
T Consensus 77 ~~~~Gt~~al~~--a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-------~~~~~l~~~~~~~~~~~g----~ 143 (456)
T PRK14356 77 EQQLGTGHALQC--AWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-------GADLAFMTLTLPDPGAYG----R 143 (456)
T ss_pred CCCCCcHHHHHH--HHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-------cCCEEEEEEEcCCCCCce----E
Confidence 777889998873 344442 5799999998 45567888888765 245666767766666776 6
Q ss_pred EEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCC-CCCc-hhhhhcccccCh
Q psy1482 171 VAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNF-DFQT-QEHFIKGVLINE 248 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~f-d~~~-~~dfi~~il~~~ 248 (627)
+.. ++|+|..+.++++...... ...++++++|+|+|+++++..+.+.. .... .+.++..++...
T Consensus 144 v~~--~~g~V~~~~ek~~~~~~~~------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~ 209 (456)
T PRK14356 144 VVR--RNGHVAAIVEAKDYDEALH------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLA 209 (456)
T ss_pred EEE--cCCeEEEEEECCCCChHHh------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHH
Confidence 544 4789999988764110000 01356789999999999886442221 1111 112233333222
Q ss_pred hcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCC--------CCCceeecCeEEECCCeEECCCCEEcCCcE
Q psy1482 249 EILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF--------VPSYKYRRNNIYLAEDVLIGKTSVLKQQVV 320 (627)
Q Consensus 249 ~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~--------~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ 320 (627)
...|.+++++...+..+|.+|+++++|..+...+..+....+ .|...++.+++.+++++.|..++.|++++.
T Consensus 210 ~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ 289 (456)
T PRK14356 210 VAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASR 289 (456)
T ss_pred HHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceE
Confidence 235778999988643267999999999988765554422111 122344555566666666666677777889
Q ss_pred ECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcE
Q psy1482 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVL 395 (627)
Q Consensus 321 ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ 395 (627)
||++|.|+++|.|.+++||++|.|+++|+|.+++|++++.||++++|. +++|++++.||+++.+. +++|++++.
T Consensus 290 ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~ 364 (456)
T PRK14356 290 IARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK-KAVLGKGAK 364 (456)
T ss_pred ECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee-eeEecCCcE
Confidence 999999999999999999999999999999999999999999999996 78899998888887665 355555443
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=337.96 Aligned_cols=320 Identities=15% Similarity=0.167 Sum_probs=210.4
Q ss_pred CCceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEE
Q psy1482 15 DEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
+..+.|||||||.|+||++ ..||+|+|++|+|||+|+++.|..+|+++|+|++++..+.+.+++.... ..+.++
T Consensus 3 ~~~~~aiILAaG~gsR~~~-~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~-----~~~~~~ 76 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS-SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA-----PDAEIF 76 (446)
T ss_pred cccceEEEEcCCCCCccCC-CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-----CCceEE
Confidence 3568999999999999986 6899999999999999999999999999999999998899998886521 234455
Q ss_pred eCCCCcchhhhhhcccccCCc---cCCEEEEeCCe-e-ccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI---RNDFILVSGDV-V-SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i---~~dfll~~gD~-i-~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
.+....|++++++. +...+ .++|++++||. + ....+..+++.+ +. ++.++++..+...+.+++
T Consensus 77 ~~~~~~G~~~sl~~--a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~-----~~~~~i~~~~~~~~~~~g---- 144 (446)
T PRK14353 77 VQKERLGTAHAVLA--AREALAGGYGDVLVLYGDTPLITAETLARLRERL-AD-----GADVVVLGFRAADPTGYG---- 144 (446)
T ss_pred EcCCCCCcHHHHHH--HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hc-----CCcEEEEEEEeCCCCcce----
Confidence 56667788888873 34344 46799999998 4 345677777633 22 355666666655555665
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCCc-hhhhhcccccC
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQT-QEHFIKGVLIN 247 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~~-~~dfi~~il~~ 247 (627)
++.. ++++|..+.++|... +. .....+.++|+|+|++..+ ++++....... .+.++.+.+..
T Consensus 145 ~~~~--~~g~v~~~~ek~~~~-----~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 208 (446)
T PRK14353 145 RLIV--KGGRLVAIVEEKDAS-----DE---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAI 208 (446)
T ss_pred EEEE--CCCeEEEEEECCCCC-----hH---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHH
Confidence 5555 368999998876310 00 0022467899999998765 45443211111 11223333322
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcc-------cCC-CCCCceeecCeEEECCCeEECCCCEEcCCc
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRW-------VHP-FVPSYKYRRNNIYLAEDVLIGKTSVLKQQV 319 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~-------~~~-~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 319 (627)
....|.+++++..+.+ +|.+|++|++|..++..+..+. ..+ ..|...+..+.+.|++++.|++++.|++++
T Consensus 209 l~~~g~~v~~~~~~~~-~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~ 287 (446)
T PRK14353 209 ARAEGLRVAVVEAPED-EVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGV 287 (446)
T ss_pred HHHCCCeEEEEecChh-hcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCC
Confidence 2235778999998755 8999999999988875332221 011 123233444555566666666666666666
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEe-ceEECCCCEeCCCcEEee
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-KSYLFDNVKIEDNCEVRL 369 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i~~ 369 (627)
.||++|.|+.++.|.+++||++|+||++|+|. +++|++++.||++|.|.+
T Consensus 288 ~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 338 (446)
T PRK14353 288 TVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN 338 (446)
T ss_pred EECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEec
Confidence 66666666666666566666666666666663 566666666666655543
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-37 Score=336.20 Aligned_cols=328 Identities=14% Similarity=0.093 Sum_probs=224.8
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.++|||||||.|+||+| .+||+|+|++|+|||+|+++.|..+ +++|+|++++..+++++++.+. + ..+.++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~-~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~-~----~~v~~~~~ 74 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS-SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEY-F----PGVIFHTQ 74 (430)
T ss_pred CccEEEEcCCCCccCCC-CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhc-C----CceEEEEe
Confidence 36899999999999998 8999999999999999999999987 7899999999999999999762 1 13555544
Q ss_pred --CCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEE
Q psy1482 97 --DGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYE 174 (627)
Q Consensus 97 --~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d 174 (627)
....+++++++.+ + ...++|++++||.... ....++.|.+. ++.+|+.+.+...+..++ .+..+
T Consensus 75 ~~~~~~gt~~al~~~--~-~~~d~vlv~~gD~p~~--~~~~l~~l~~~-----~~~~~v~~~~~~~~~~~g----~v~~d 140 (430)
T PRK14359 75 DLENYPGTGGALMGI--E-PKHERVLILNGDMPLV--EKDELEKLLEN-----DADIVMSVFHLADPKGYG----RVVIE 140 (430)
T ss_pred cCccCCCcHHHHhhc--c-cCCCeEEEEECCccCC--CHHHHHHHHhC-----CCCEEEEEEEcCCCccCc----EEEEc
Confidence 3457899999853 2 1246799999998431 22445555543 355677776665555565 55554
Q ss_pred CCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCC-CCc-hhhhhcccccChhccc
Q psy1482 175 CDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFD-FQT-QEHFIKGVLINEEILD 252 (627)
Q Consensus 175 ~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd-~~~-~~dfi~~il~~~~~~g 252 (627)
+|+|..+.+++.. +. -....++.++|+|+|++++|..+..... ... .+.++.+++......|
T Consensus 141 --~g~v~~i~e~~~~------~~--------~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g 204 (430)
T PRK14359 141 --NGQVKKIVEQKDA------NE--------EELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKG 204 (430)
T ss_pred --CCeEEEEEECCCC------Cc--------ccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcC
Confidence 6899999886631 00 0012457899999999999885532111 101 1223333332222347
Q ss_pred CeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccC--------CC------CCCceeecCeEEECCCeEECCCCEEcCC
Q psy1482 253 CRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVH--------PF------VPSYKYRRNNIYLAEDVLIGKTSVLKQQ 318 (627)
Q Consensus 253 ~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~--------~~------~~~~~~~~~~~~i~~~~~i~~~~~i~~~ 318 (627)
.+++++..+.+ +|.+|+++++|..+++.+..+... +. +++...+.+.+++++++.|+++|.|+ +
T Consensus 205 ~~v~~~~~~~~-~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~ 282 (430)
T PRK14359 205 ETIKAVFVDEE-NFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-N 282 (430)
T ss_pred CeEEEEEcCCC-EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-e
Confidence 88999998756 999999999999997654433211 01 22233445556666666666666665 6
Q ss_pred cEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCC----------EeCCCcEEeeeeecCCcEECCCcEE
Q psy1482 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNV----------KIEDNCEVRLSVLSYNTGVGEHSKL 384 (627)
Q Consensus 319 ~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v----------~Ig~~~~i~~~ii~~~~~Ig~~~~i 384 (627)
++||++|.|++ +.|.+++||++|+|+++|+|.+|.||++| +||+++.|.+|+||++|.||+++.+
T Consensus 283 ~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 283 SHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred eEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 77777777765 55667888888888888888777777766 5556666777888888877776544
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=324.31 Aligned_cols=315 Identities=16% Similarity=0.205 Sum_probs=211.4
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.++|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|..+|+++++|+++++.+++++|+... +.++.+
T Consensus 2 ~~~avIlAaG~g~Rl~~-~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~--------~~~~~~ 72 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS-KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR--------SEFALQ 72 (458)
T ss_pred CceEEEEeCCCCcccCC-CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC--------cEEEEc
Confidence 36899999999999987 789999999999999999999999999999999999889999887541 344556
Q ss_pred CCCcchhhhhhcccccCCcc---CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEE
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR---NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIV 171 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~---~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv 171 (627)
....|++++++ .+..++. ++|+++.||. +...++..+++.|+.. ++..|+++....++..++ ++
T Consensus 73 ~~~~g~~~al~--~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-----~~~~t~~~~~~~~~~~~g----~v 141 (458)
T PRK14354 73 EEQLGTGHAVM--QAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-----KAAATILTAIAENPTGYG----RI 141 (458)
T ss_pred CCCCCHHHHHH--HHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-----CCceEEEEEEcCCCCCce----EE
Confidence 66788888887 3444443 4599999996 4567899999998764 466777766665555565 66
Q ss_pred EEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCc-hhhhhhcCCCCCc-hhhhhcccccChh
Q psy1482 172 AYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPA-VPPLFSDNFDFQT-QEHFIKGVLINEE 249 (627)
Q Consensus 172 ~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~-vl~~~~~~fd~~~-~~dfi~~il~~~~ 249 (627)
..| ++++|..+.+++.. .|. .....++++|+|+|+++ +++.+.....-.. ...++.+.+....
T Consensus 142 ~~d-~~~~V~~~~ek~~~-----~~~---------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~ 206 (458)
T PRK14354 142 IRN-ENGEVEKIVEQKDA-----TEE---------EKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILK 206 (458)
T ss_pred EEc-CCCCEEEEEECCCC-----ChH---------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHH
Confidence 667 57889999886530 000 00235678999999997 4455543211000 1111222222211
Q ss_pred cccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhccc----CC----CCCCceeecCeEEECCCeEECCCCEEcCCcEE
Q psy1482 250 ILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWV----HP----FVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVI 321 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~----~~----~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 321 (627)
..|.++++|.+++...|.+++++.+|..++..+..+.. .+ ..|+..++.+++.|++++.|++++.|++++.|
T Consensus 207 ~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~I 286 (458)
T PRK14354 207 NEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVI 286 (458)
T ss_pred HCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEE
Confidence 24678999998731146677899888887654332221 11 12334566667777777777777777777888
Q ss_pred CCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEE
Q psy1482 322 GEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 322 g~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i 367 (627)
|++|.|++++.|.+++||++|.|+ ++.+.+++|++++.||.+|.|
T Consensus 287 g~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i 331 (458)
T PRK14354 287 GEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHL 331 (458)
T ss_pred CCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEe
Confidence 888888888777666555555554 233344444444444444444
No 25
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=322.25 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=207.6
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|+|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|...+ ++|+|++++..+.+.+|+.. .+.++.+.
T Consensus 1 m~avIlA~G~gtRl~~-~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~--------~~~~~~~~ 70 (448)
T PRK14357 1 MRALVLAAGKGTRMKS-KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE--------WVKIFLQE 70 (448)
T ss_pred CeEEEECCCCCccCCC-CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc--------ccEEEecC
Confidence 7999999999999987 78999999999999999999999875 89999999888888888754 13456677
Q ss_pred CCcchhhhhhcccccCCcc--CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 98 GCYSFGDVMRDLDGKAVIR--NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i~--~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
...|++++++ .+..++. ++|++++||. +.+.++..+++.|++. ++.+|+++++..++.+|+ ++.+
T Consensus 71 ~~~g~~~ai~--~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-----~~d~ti~~~~~~~~~~~g----~v~~ 139 (448)
T PRK14357 71 EQLGTAHAVM--CARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK-----GADVTILVADLEDPTGYG----RIIR 139 (448)
T ss_pred CCCChHHHHH--HHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc-----CCeEEEEEEEcCCCCCcE----EEEE
Confidence 7789999988 4455553 5799999997 6778999999999765 578888888877777776 6666
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCCc-hhhhhcccccChhcc
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQT-QEHFIKGVLINEEIL 251 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~~-~~dfi~~il~~~~~~ 251 (627)
+ ++++ .+.+++.. +.+ ....+++++|+|+|++++| +++++-..... .+.++.+++.. .
T Consensus 140 d--~g~v-~~~e~~~~------~~~--------~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~--~- 199 (448)
T PRK14357 140 D--GGKY-RIVEDKDA------PEE--------EKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNF--A- 199 (448)
T ss_pred c--CCeE-EEEECCCC------ChH--------HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHh--h-
Confidence 5 5777 66564420 100 0023578999999999985 44543211110 11122233321 1
Q ss_pred cCeeEEEEcCCCce--eeecCChhhHHHHhHHH----hhcccCC---CC-CCceeecCeEEECCCeEECCCCEEcCCcEE
Q psy1482 252 DCRLYCSVVDDIEY--GISVKDWPSYQIASRDI----VQRWVHP---FV-PSYKYRRNNIYLAEDVLIGKTSVLKQQVVI 321 (627)
Q Consensus 252 g~~I~~~~~~~~~~--~~~V~s~~~y~~a~~di----l~~~~~~---~~-~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 321 (627)
.++++|... + | |..++++..+..+...+ +.....+ ++ |...++.+++.|++++.|++++.|++++.|
T Consensus 200 -~~v~~~~~~-~-~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~i 276 (448)
T PRK14357 200 -EKVRVVKTE-D-LLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRI 276 (448)
T ss_pred -hheeEEecC-C-HHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEE
Confidence 357888776 4 6 66777988877654432 2211111 11 223456667777777777777777777778
Q ss_pred CCCCEECCCceeeeeEECCCCEE----------------CCCcEE-eceEECCCCEeCCCcEE
Q psy1482 322 GEGSSIGENTQLSHCIIGRNCTI----------------GSNVRL-EKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 322 g~~~~Ig~~~~I~~s~Ig~~~~I----------------g~~~~I-~~s~i~~~v~Ig~~~~i 367 (627)
|++|.|+++|.|.+|+||++|.| |++++| .+++|++++.||+++.+
T Consensus 277 g~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 277 GEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI 339 (448)
T ss_pred CCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee
Confidence 88887777776655555555544 445555 33555555555555444
No 26
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-36 Score=287.71 Aligned_cols=278 Identities=18% Similarity=0.183 Sum_probs=220.0
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHh-cccccCCeeEEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKR-KEKSLVGTLITL 93 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~-~~~~~~~~~v~~ 93 (627)
|||||||||.|||++|+ ..||+||||.+||||.|.|+.|..+||++|.|++++ +...+++++++ +.|+ ++++|
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g---v~itY 77 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG---VDITY 77 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC---cceEE
Confidence 89999999999999999 999999999999999999999999999999999997 78999999987 6776 99999
Q ss_pred EeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 94 IVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 94 i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
+.|+.+.|.++|+. .++++++ ++|+|+.||.++.-++.++++.+.++ .+.+++++.++.+++||| |+.
T Consensus 78 ~~Q~~p~GlA~Av~--~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~-----~~ga~i~~~~V~dP~rfG----V~e 146 (286)
T COG1209 78 AVQPEPDGLAHAVL--IAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEE-----GSGATILLYEVDDPSRYG----VVE 146 (286)
T ss_pred EecCCCCcHHHHHH--HHHhhcCCCceEEEecCceeccChHHHHHHHhcc-----CCCcEEEEEEcCCcccce----EEE
Confidence 99999999999998 7789998 88999999999777999999988876 578899999999999999 999
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhh-hcccccChhcc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHF-IKGVLINEEIL 251 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~df-i~~il~~~~~~ 251 (627)
+| ++++++.++|||. - +++||.-+|+|+++|.|++.++. .....|.++ +.+++......
T Consensus 147 ~d-~~~~v~~l~EKP~------~------------P~SNlAvtGlY~~d~~Vf~~~~~-ikPS~RGElEITd~i~~~i~~ 206 (286)
T COG1209 147 FD-EDGKVIGLEEKPK------E------------PKSNLAVTGLYFYDPSVFEAIKQ-IKPSARGELEITDAIDLYIEK 206 (286)
T ss_pred Ec-CCCcEEEeEECCC------C------------CCCceeEEEEEEeChHHHHHHHc-CCCCCCCceEehHHHHHHHHc
Confidence 98 6779999999985 2 27899999999999999998775 222323332 11111111135
Q ss_pred cCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcccCCCCCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCc
Q psy1482 252 DCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENT 331 (627)
Q Consensus 252 g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~ 331 (627)
|..+...... | +|.+++++++|++|++.+.... .+.+...+ .+..++. ++.|-..+.|+.++
T Consensus 207 G~~~~~~~~~-G-~WlDtGt~~slleA~~~i~~~~---------~~~G~~~~------~~~~~~~-~~~i~~~~~~~~~~ 268 (286)
T COG1209 207 GYLVVAILIR-G-WWLDTGTPESLLEANNFVRTVS---------KRQGFKIA------CPEEIAW-NGWIDGPGLIGLAS 268 (286)
T ss_pred CcEEEEEEcc-c-eEEecCChhhHHHHHHHHHHHH---------hhcCCEEe------ChhHEEE-ecEEechHhhcccc
Confidence 7777777777 7 9999999999999999876521 12223333 3334443 44444445555555
Q ss_pred eeeeeEECCCCEECCC
Q psy1482 332 QLSHCIIGRNCTIGSN 347 (627)
Q Consensus 332 ~I~~s~Ig~~~~Ig~~ 347 (627)
.|.++.+|+...++.+
T Consensus 269 ~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 269 QLEKSGYGQYLLELLR 284 (286)
T ss_pred chhhcCcchhhhhhhc
Confidence 5666677776666544
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-34 Score=314.18 Aligned_cols=313 Identities=17% Similarity=0.232 Sum_probs=211.5
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|.+||||||.|+||++ .+||+|+|++|+|||+|+|+.|..+|+.+++|++++..+++++++... ..+.++.+.
T Consensus 2 ~~~iIlAaG~gsR~~~-~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~------~~i~~v~~~ 74 (450)
T PRK14360 2 LAVAILAAGKGTRMKS-SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL------PGLEFVEQQ 74 (450)
T ss_pred ceEEEEeCCCCccCCC-CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc------CCeEEEEeC
Confidence 6799999999999987 789999999999999999999999999999999998888898888642 135666666
Q ss_pred CCcchhhhhhcccccCCc---cCCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 98 GCYSFGDVMRDLDGKAVI---RNDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i---~~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
...|++++++.. ...+ .++|++++||. +...++..+++.|++. ++.+|++..+..++..++ .+.
T Consensus 75 ~~~G~~~sv~~~--~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~-----~~~~~~~~~~~~~~~~~g----~~~ 143 (450)
T PRK14360 75 PQLGTGHAVQQL--LPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS-----NADVTLLTARLPNPKGYG----RVF 143 (450)
T ss_pred CcCCcHHHHHHH--HHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEecCCCCCcc----EEE
Confidence 778888888732 3333 35799999998 5677899999998865 466777766666666676 677
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhh-hcCCCCCc-hhhhhcccccChhc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLF-SDNFDFQT-QEHFIKGVLINEEI 250 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~-~~~fd~~~-~~dfi~~il~~~~~ 250 (627)
+| ++++|..+.+++... +. ...++++++|+|+|+++.|..+ ........ .+.++.+.+.. +
T Consensus 144 ~d-~~g~v~~~~ek~~~~-----~~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~--~ 206 (450)
T PRK14360 144 CD-GNNLVEQIVEDRDCT-----PA---------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSL--L 206 (450)
T ss_pred EC-CCCCEEEEEECCCCC-----hh---------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHH--H
Confidence 77 678999998876300 00 0135688999999999877543 33211111 22233333211 1
Q ss_pred ccCeeEEEEcCCCceeeecCChhhHHHHhHHHh----hcccCC---CCCC-ceeecCeEEECCCeEECCCCEEcCCcEEC
Q psy1482 251 LDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV----QRWVHP---FVPS-YKYRRNNIYLAEDVLIGKTSVLKQQVVIG 322 (627)
Q Consensus 251 ~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil----~~~~~~---~~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~ig 322 (627)
..++++.+.+...+..++++.++..+...+. ..|..+ ++.. .....+++++++++.|++++.|++++.||
T Consensus 207 --~~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 284 (450)
T PRK14360 207 --DPVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIG 284 (450)
T ss_pred --hhceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEEC
Confidence 1245666664323566899988877654322 224222 2221 22355567777777777777887778888
Q ss_pred CCCEECCCceeeeeEE----------------CCCCEECCCcEEe-ceEECCCCEeCCCcEE
Q psy1482 323 EGSSIGENTQLSHCII----------------GRNCTIGSNVRLE-KSYLFDNVKIEDNCEV 367 (627)
Q Consensus 323 ~~~~Ig~~~~I~~s~I----------------g~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i 367 (627)
++|.|++++.|.+++| |++|.||++|+|. ++.|++++.||.++.|
T Consensus 285 ~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 285 SGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEI 346 (450)
T ss_pred CCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEE
Confidence 8888877777765444 4444555555552 4555555555555544
No 28
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=5.9e-35 Score=286.46 Aligned_cols=208 Identities=40% Similarity=0.665 Sum_probs=180.6
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcc-cccC--CeeEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE-KSLV--GTLIT 92 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~-~~~~--~~~v~ 92 (627)
|||||||+|+|+||+|+ .+|||||||+|+|||+|+|++|..+|+++|+|+++++.+++++|+++.. |... ...+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 68999999999999999 9999999999999999999999999999999999999999999998753 3311 24677
Q ss_pred EEeCCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCC--CCCcceE
Q psy1482 93 LIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKS--SWKEDLI 170 (627)
Q Consensus 93 ~i~~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~v 170 (627)
++.++...++|+|++.+.++..+.++|+|++||++++.++.++++.|+++++.++++.||+++++++++.+ ++..+++
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~v 160 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFV 160 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceE
Confidence 77788889999999987777777889999999999999999999999998766778999999988876553 3334567
Q ss_pred EEEECCCCeEEEeeCCCCCC--CccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 171 VAYECDSKKLLMHQTPQDNQ--KKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
+.+|+++++|+.+.++|... ..+++++.++..++++.+++||+|+|||+|+|+||
T Consensus 161 v~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 161 IAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 88886669999999998632 24678999999999999999999999999999985
No 29
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=9.6e-33 Score=270.00 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=170.9
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHhccccc-CCeeEEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSL-VGTLITL 93 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~-~~~~v~~ 93 (627)
|||||||||+|+||+|+ ..||+|||++|+|||+|+|++|..+|+++|+|++++ +.++++++++...|.. ....+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 79999999999999999 899999999999999999999999999999999996 5678999987654431 1233445
Q ss_pred EeCCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCC-------CCC-
Q psy1482 94 IVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSK-------SSW- 165 (627)
Q Consensus 94 i~~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~-------~~~- 165 (627)
+.+....|+|++++.+ .+.+.++|+|++||++++.++..+++.|++. ++.+|+++++..... +.+
T Consensus 81 ~~~~~~~gt~~al~~~--~~~i~~d~lv~~~D~i~~~~l~~~l~~h~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 81 IVLDEDMGTADSLRHI--RKKIKKDFLVLSCDLITDLPLIELVDLHRSH-----DASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred ecCCCCcChHHHHHHH--HhhcCCCEEEEeCccccccCHHHHHHHHhcc-----CCcEEEEEeccCCcccccCCcccccC
Confidence 5567889999999954 4457889999999999999999999999875 689999998865433 122
Q ss_pred -CcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 166 -KEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 166 -~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
++..++++|++++|+++|.+..+.++.+.+++++|++||++.++++|+|||||+|+++|+
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 567899999999999999886555567888999999999999999999999999999985
No 30
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.7e-32 Score=277.46 Aligned_cols=236 Identities=16% Similarity=0.218 Sum_probs=181.7
Q ss_pred ceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccc---------
Q psy1482 17 VLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKS--------- 85 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~--------- 85 (627)
.|+|||||||.||||+|+ .+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+... |.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~-~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTS-YELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhch-HHHHHHHHHhc
Confidence 699999999999999999 899999999999999999999999999999999999999999999642 20
Q ss_pred ------------cCCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeecc--------ccHHHHHHHHHHHhc
Q psy1482 86 ------------LVGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSN--------INLLSALKSFKKINS 144 (627)
Q Consensus 86 ------------~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~--------~~l~~~l~~h~~~~~ 144 (627)
..+++++++.|+...|+|+|++ .++++++ ++|+|++||++++ +++.++++.|.++
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~--~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~-- 157 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSIL--CARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNET-- 157 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHH--HHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHh--
Confidence 0246788999999999999998 5677775 5799999999986 6899999999765
Q ss_pred CCCCceEEEEeeccCCCCCCCCcceEEEEEC---CCCe---EEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceee
Q psy1482 145 MDSGAVALVLYKKKGQSKSSWKEDLIVAYEC---DSKK---LLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIM 218 (627)
Q Consensus 145 ~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~---~~~~---vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 218 (627)
++.++++......+.+|| ++.++. .+|+ |..+.|||.. |. ...++++++|+|
T Consensus 158 ---~~~~~~~~~~~~~~~~yG----vv~~~~~~d~~g~v~~I~~~~EKP~~------~~---------~~~s~~~~~GiY 215 (297)
T TIGR01105 158 ---GRSQVLAKRMPGDLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQ------PQ---------TLDSDLMAVGRY 215 (297)
T ss_pred ---CCcEEEEEEcCCCCccce----EEEecccccCCCCeeeEeEEEECCCC------cc---------cCCcCEEEEEEE
Confidence 344455544434466777 888741 2454 5788887730 10 014578999999
Q ss_pred ecCCchhhhhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 219 ICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 219 i~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
+|+++++.++.........+..+.+++.. .+.+.+++++.++ | +|+|||+|++|.+++.++
T Consensus 216 i~~~~i~~~l~~~~~~~~ge~~ltd~i~~-l~~~~~v~~~~~~-g-~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 216 VLSADIWAELERTEPGAWGRIQLTDAIAE-LAKKQSVDAMLMT-G-DSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EECHHHHHHHhcCCCCCCCeeeHHHHHHH-HHhcCCEEEEEec-c-EEECCCCHHHHHHHHHHH
Confidence 99999999886632211112112222222 2345689999997 7 999999999999998886
No 31
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=5.2e-31 Score=258.01 Aligned_cols=203 Identities=30% Similarity=0.415 Sum_probs=162.5
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccc--cCCeeEEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKS--LVGTLITL 93 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~--~~~~~v~~ 93 (627)
|||||||||+|+||.|+ ..||+|+||+|+|||+|++++|..+|+++|+|+++++...+.+|+.+..|. .....+.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 79999999999999999 999999999999999999999999999999999999999999999876542 12233444
Q ss_pred Ee--CCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCC-----CCC
Q psy1482 94 IV--SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKS-----SWK 166 (627)
Q Consensus 94 i~--~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~-----~~~ 166 (627)
+. +....|++++++ .++..++++|+|++||+++++++..+++. +|...+++.||+.+....+... ..+
T Consensus 81 ~~~~~~~~~Gta~~l~--~~~~~i~~dflv~~gD~i~~~~l~~~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLR--DIRGLIRSDFLLLSCDLVSNIPLSELLEE---RRKKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHH--HHhhcCCCCEEEEeCCEeecCCHHHHHHH---HHhhCcccceEEEEEeccCCCCccccccCC
Confidence 33 445556666665 67788889999999999999999999987 2222345666666555443332 124
Q ss_pred cceEEEEECCC--CeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 167 EDLIVAYECDS--KKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 167 ~~~vv~~d~~~--~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
+..++++|+++ .+++++.+++.....+.++.++++++|++.+++||+|||||+|+++|+
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 66799999776 678888887765555667999999999999999999999999999985
No 32
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=5.3e-31 Score=268.83 Aligned_cols=237 Identities=17% Similarity=0.233 Sum_probs=184.5
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhccccc-------
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSL------- 86 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~------- 86 (627)
..|+|||+|||+||||+|+ .+||||+||+|+|||+|+|++|..+|+++|+|++++..+++.+|+.. .|..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~l~~~~~~~ 80 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQR 80 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhc-chhHHHHHhhc
Confidence 4799999999999999999 89999999999999999999999999999999999999999999964 3310
Q ss_pred --------------CCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeecc--------ccHHHHHHHHHHHh
Q psy1482 87 --------------VGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSN--------INLLSALKSFKKIN 143 (627)
Q Consensus 87 --------------~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~--------~~l~~~l~~h~~~~ 143 (627)
.++++.++.|+...|+|+|++ .+++++. ++|+|++||++++ +|+..+++.|.+.
T Consensus 81 ~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~--~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~- 157 (297)
T PRK10122 81 VKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSIL--CARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNET- 157 (297)
T ss_pred chhhhHHhhhhccCCCceEEEeecCCcCchHHHHH--HHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHh-
Confidence 246788898999999999998 6677775 6799999999985 5899999999765
Q ss_pred cCCCCceEEEEeeccCCCCCCCCcceEEEEEC---CCC---eEEEeeCCCCCCCccccchhhhccCCcEEEEecCCccee
Q psy1482 144 SMDSGAVALVLYKKKGQSKSSWKEDLIVAYEC---DSK---KLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGI 217 (627)
Q Consensus 144 ~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~---~~~---~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 217 (627)
++.++++.......++|| ++.+|. .++ +|..+.++|.. |. ...++++++|+
T Consensus 158 ----~~~~~~~~~~~~~~~~yG----vv~~d~~~~~~g~v~~I~~~~EKp~~------~~---------~~~s~~~~~Gi 214 (297)
T PRK10122 158 ----GRSQVLAKRMPGDLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQ------PQ---------TLDSDLMAVGR 214 (297)
T ss_pred ----CCcEEEEEECCCCCCCce----EEEecCcccCCCCeeeEEEEEECCCC------cc---------cCCccEEEEEE
Confidence 344555554444556676 888752 245 78888888730 10 01357899999
Q ss_pred eecCCchhhhhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 218 MICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 218 yi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
|+|+++++..+.+.......+.++.+++.. .+.+.++++|.++ | +|.|||+|++|..++.++
T Consensus 215 Yi~~~~i~~~l~~~~~~~~~e~~ltd~i~~-l~~~~~v~~~~~~-G-~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 215 YVLSADIWPELERTEPGAWGRIQLTDAIAE-LAKKQSVDAMLMT-G-DSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEECHHHHHHHHhCCCCCCCeeeHHHHHHH-HHhCCCEEEEEeC-C-EEEcCCCHHHHHHHHHHH
Confidence 999999999887632211122223333322 2445689999998 7 999999999999999987
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.97 E-value=2e-31 Score=267.34 Aligned_cols=236 Identities=22% Similarity=0.317 Sum_probs=187.0
Q ss_pred EEEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEec-CChHHHHHHHHhcc-cccCCeeEEE
Q psy1482 19 QAVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCT-SHVNQIRELVKRKE-KSLVGTLITL 93 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~-~~~~~i~~~l~~~~-~~~~~~~v~~ 93 (627)
||||||||+|+||+|+ .+||||||++|+ |||+|+|++|..+|+++++++++ ++.+++.+|+++.. |+ +++.+
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~---~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFG---VKIEY 77 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGT---EEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccccc---cccee
Confidence 7999999999999999 999999999999 99999999999999999655555 78999999998853 43 78999
Q ss_pred EeCCCCcchhhhhhcccccCCccC-----CEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcc
Q psy1482 94 IVSDGCYSFGDVMRDLDGKAVIRN-----DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKED 168 (627)
Q Consensus 94 i~~~~~~~~gdalr~l~~~~~i~~-----dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~ 168 (627)
+.++...|+|+|++ .+...+.. +|++++||++++.++..+++.|+++.. ...+++...+...+.++|
T Consensus 78 i~~~~~~Gta~al~--~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~g--- 149 (248)
T PF00483_consen 78 IVQPEPLGTAGALL--QALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNA---DGTVTLLVVPVEDPSRYG--- 149 (248)
T ss_dssp EEESSSSCHHHHHH--HTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSS---CESEEEEEEESSGGGGSE---
T ss_pred eecccccchhHHHH--HHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccc---ccccccccccccccccce---
Confidence 99998899999999 44555553 389999999999999999999999841 125667777766666776
Q ss_pred eEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCC-CCCchhhhhcccccC
Q psy1482 169 LIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNF-DFQTQEHFIKGVLIN 247 (627)
Q Consensus 169 ~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~f-d~~~~~dfi~~il~~ 247 (627)
++.+| ++++|+.+.|||. .+. .++++++|+|+|++++|..+.+.. ......+++.+++..
T Consensus 150 -~v~~d-~~~~V~~~~EKP~------~~~-----------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~ 210 (248)
T PF00483_consen 150 -VVEVD-EDGRVIRIVEKPD------NPN-----------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPK 210 (248)
T ss_dssp -EEEEE-TTSEEEEEEESCS------SHS-----------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHH
T ss_pred -eeeec-cceeEEEEeccCc------ccc-----------cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHH
Confidence 89999 7899999999985 110 156899999999999999773210 111234555555544
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhh
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQ 284 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~ 284 (627)
....|..+.++..++..+|.+|++|++|.++++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 211 LLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 3345667888888842159999999999999999875
No 34
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=8.2e-31 Score=264.08 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=179.9
Q ss_pred EEEEeCC--CCCCCCcC--CCCccccccCCeehHHHHHHHHHh-CCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEE
Q psy1482 20 AVIVTDT--FNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHL-SGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 20 aVIlA~g--~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
||||||| +|+||+|+ .+||||+||+|+|||+|+|++|.. +|+++|+|++++..+++++|++..... .++.+.++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~-~~~~i~~~ 79 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQE-FNVPIRYL 79 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccc-cCceEEEe
Confidence 6999999 89999999 999999999999999999999999 699999999999999999999863211 24677777
Q ss_pred eCCCCcchhhhhhcccccCCc----cCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccC--CCCCCCCcc
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI----RNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKG--QSKSSWKED 168 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i----~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~--~~~~~~~~~ 168 (627)
.+....|+++|++ .+++++ .++|+|++||++++.++..+++.|+++ ++.+|++++++. ...+|+
T Consensus 80 ~~~~~~Gt~~al~--~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~-----~~~~tl~~~~~~~~~~~~yg--- 149 (257)
T cd06428 80 QEYKPLGTAGGLY--HFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKH-----GASGTILGTEASREQASNYG--- 149 (257)
T ss_pred cCCccCCcHHHHH--HHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHc-----CCCEEEEEEEcccccccccc---
Confidence 7777889999987 445555 257999999999999999999999876 477888887753 345555
Q ss_pred eEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCC--------------
Q psy1482 169 LIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDF-------------- 234 (627)
Q Consensus 169 ~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~-------------- 234 (627)
++.+|+++++|+.+.++|. . ..++++++|+|+|+++++..+.+....
T Consensus 150 -~v~~d~~~g~v~~~~Ekp~------~------------~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~ 210 (257)
T cd06428 150 -CIVEDPSTGEVLHYVEKPE------T------------FVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNRE 210 (257)
T ss_pred -EEEEeCCCCeEEEEEeCCC------C------------cccceEEEEEEEECHHHHHHHhhhccccccccccccccccc
Confidence 7878745689999999873 0 134689999999999999877642110
Q ss_pred --CchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHH
Q psy1482 235 --QTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRD 281 (627)
Q Consensus 235 --~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~d 281 (627)
....++..+++... +...+|++|..+ | ||.+|+++++|.++++.
T Consensus 211 ~~~~~~~~~~d~~~~l-~~~~~v~~~~~~-g-~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 211 GRAEVIRLEQDVLTPL-AGSGKLYVYKTD-D-FWSQIKTAGSAIYANRL 256 (257)
T ss_pred cccceeeehhhhhhHH-hccCCEEEecCC-C-eeecCCCHHHHHhHhhc
Confidence 00112223333322 334589999998 7 99999999999999885
No 35
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=8.9e-31 Score=259.98 Aligned_cols=228 Identities=17% Similarity=0.252 Sum_probs=183.5
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
|||||||||.|+||+|+ .+||+|+|++|+|||+|++++|..+|+++|+|+++++.+++.+|+.+.... .++.+.+..
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~-~~~~i~~~~ 79 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKK-LGIKITFSI 79 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccccc-CCeEEEecc
Confidence 79999999999999999 899999999999999999999999999999999999999999999752101 235555555
Q ss_pred CCCCcchhhhhhcccccCCcc---CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 96 SDGCYSFGDVMRDLDGKAVIR---NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i~---~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
+....|+++++. .++..++ ++|+|++||++++.++..+++.|+++ ++.+|+++.+..++.+++ ++.
T Consensus 80 ~~~~~G~~~al~--~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g----~v~ 148 (233)
T cd06425 80 ETEPLGTAGPLA--LARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKH-----GAEGTILVTKVEDPSKYG----VVV 148 (233)
T ss_pred CCCCCccHHHHH--HHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHc-----CCCEEEEEEEcCCccccC----eEE
Confidence 667789999988 4455554 57999999999999999999999876 577888888776666666 888
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhccc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILD 252 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g 252 (627)
+|+++++|+.+.++|. .+ .++++++|+|+|+++++..+.+... ....++++.++ ..
T Consensus 149 ~d~~~~~v~~~~ekp~------~~------------~~~~~~~Giyi~~~~~l~~l~~~~~-~~~~~~~~~l~-----~~ 204 (233)
T cd06425 149 HDENTGRIERFVEKPK------VF------------VGNKINAGIYILNPSVLDRIPLRPT-SIEKEIFPKMA-----SE 204 (233)
T ss_pred EcCCCCEEEEEEECCC------CC------------CCCEEEEEEEEECHHHHHhcccCcc-cchhhhHHHHH-----hc
Confidence 8843789999998873 01 2467899999999999998876421 11234544332 34
Q ss_pred CeeEEEEcCCCceeeecCChhhHHHHhHHHh
Q psy1482 253 CRLYCSVVDDIEYGISVKDWPSYQIASRDIV 283 (627)
Q Consensus 253 ~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil 283 (627)
.+|++|..+ | +|.+|+++++|.++++.+|
T Consensus 205 ~~v~~~~~~-g-~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 205 GQLYAYELP-G-FWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred CCEEEEeeC-C-EEEcCCCHHHHHHHHHHhC
Confidence 589999997 7 9999999999999988653
No 36
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.97 E-value=3.4e-30 Score=261.42 Aligned_cols=233 Identities=16% Similarity=0.169 Sum_probs=181.7
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHh-cccccCCeeE
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKR-KEKSLVGTLI 91 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~-~~~~~~~~~v 91 (627)
..|+|||||||.||||+|+ .+||||+||+|+|||+|+|+.|..+|+++|+|++++ +.+++++|+++ ..|+ +++
T Consensus 2 ~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g---~~i 78 (292)
T PRK15480 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWG---LNL 78 (292)
T ss_pred CceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccC---cee
Confidence 3699999999999999999 899999999999999999999999999999988764 57889999976 4565 788
Q ss_pred EEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCee-ccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 92 TLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVV-SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 92 ~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i-~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
.++.++...|+++|+. .+++++. ++|+|+.||.+ ++.++..+++.|... ++.+|++..++..+.+||
T Consensus 79 ~y~~q~~~~Gta~Al~--~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~-----~~~~tv~~~~v~~p~~yG---- 147 (292)
T PRK15480 79 QYKVQPSPDGLAQAFI--IGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNK-----ESGATVFAYHVNDPERYG---- 147 (292)
T ss_pred EEEECCCCCCHHHHHH--HHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhC-----CCCeEEEEEEcCCcccCc----
Confidence 8999999999999998 5667774 57999999976 589999999999765 467788877777777888
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhh-hcccccCh
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHF-IKGVLINE 248 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~df-i~~il~~~ 248 (627)
++.+| ++|+|+.+.|||. .| .++++++|+|+|++++++.++.-.. ..+..| +.+++...
T Consensus 148 vv~~d-~~g~v~~i~EKP~------~p------------~s~~a~~GiY~~~~~v~~~~~~~~~-~~~ge~~itd~~~~~ 207 (292)
T PRK15480 148 VVEFD-QNGTAISLEEKPL------QP------------KSNYAVTGLYFYDNDVVEMAKNLKP-SARGELEITDINRIY 207 (292)
T ss_pred EEEEC-CCCcEEEEEECCC------CC------------CCCEEEEEEEEEChHHHHHHhhcCC-CCCCeeEhHHHHHHH
Confidence 88888 6789999999873 11 4678899999999999998764211 112211 12222111
Q ss_pred hcccCeeEEEEcCCCceeeecCChhhHHHHhHHHh
Q psy1482 249 EILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV 283 (627)
Q Consensus 249 ~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil 283 (627)
...|.....+... +.+|.|+|++++|.++++.+.
T Consensus 208 l~~g~~~~~~~~~-g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 208 MEQGRLSVAMMGR-GYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HhcCCeEEEEecC-CcEEECCCCHHHHHHHHHHHH
Confidence 1234333334444 525999999999999988664
No 37
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.97 E-value=1.1e-29 Score=253.22 Aligned_cols=230 Identities=19% Similarity=0.219 Sum_probs=176.9
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHhc-ccccCCeeEEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRK-EKSLVGTLITL 93 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~~-~~~~~~~~v~~ 93 (627)
|+|||||||.|+||+|+ .+||||+|++|+|||+|+|++|..+|+++|+|++++ +.+++.+|+... .|+ +++.+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~---~~i~~ 77 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG---IRITY 77 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC---ceEEE
Confidence 79999999999999999 899999999999999999999999999999999875 568999999763 454 67777
Q ss_pred EeCCCCcchhhhhhcccccCCcc-CCEEEEeCCee-ccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEE
Q psy1482 94 IVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVV-SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIV 171 (627)
Q Consensus 94 i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i-~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv 171 (627)
..+....|++++++ .++++++ ++|+|++||.+ .+.++.++++.|... ++.+|+++.+...+.+++ ++
T Consensus 78 ~~~~~~~G~~~al~--~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g----~v 146 (240)
T cd02538 78 AVQPKPGGLAQAFI--IGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQ-----KEGATVFGYEVNDPERYG----VV 146 (240)
T ss_pred eeCCCCCCHHHHHH--HHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhc-----CCCcEEEEEECCchhcCc----eE
Confidence 77777899999998 5566665 57999999975 577899999999765 467788887776666676 88
Q ss_pred EEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcc
Q psy1482 172 AYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEIL 251 (627)
Q Consensus 172 ~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~ 251 (627)
.+| ++|+|..+.++|. .+ ..+++++|+|+|++++++++.+.......+..+.+++... +.
T Consensus 147 ~~d-~~g~v~~~~ekp~------~~------------~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l-~~ 206 (240)
T cd02538 147 EFD-ENGRVLSIEEKPK------KP------------KSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEY-LE 206 (240)
T ss_pred Eec-CCCcEEEEEECCC------CC------------CCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHH-HH
Confidence 888 6789999999863 01 2457899999999999998864321111111222333221 23
Q ss_pred cCeeEEEEcC-CCceeeecCChhhHHHHhHHH
Q psy1482 252 DCRLYCSVVD-DIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 252 g~~I~~~~~~-~~~~~~~V~s~~~y~~a~~di 282 (627)
..++.++.++ ++ ||.+|+++++|.++++.+
T Consensus 207 ~g~~~~~~~~~~g-~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 207 KGKLSVELLGRGF-AWLDTGTHESLLEASNFV 237 (240)
T ss_pred hCCeEEEEeCCCc-EEEeCCCHHHHHHHHHHH
Confidence 3355666654 36 999999999999998854
No 38
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.97 E-value=1.5e-29 Score=256.46 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=179.1
Q ss_pred EEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEec-CChHHHHHHHHh-cccccCCeeEEEE
Q psy1482 19 QAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCT-SHVNQIRELVKR-KEKSLVGTLITLI 94 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~-~~~~~i~~~l~~-~~~~~~~~~v~~i 94 (627)
+|||||||.|+||+|+ .+||+|+||+|+|||+|+|+.|..+|+++|+|+++ ++.+.++++++. ..|+ +++.++
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g---~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWG---VNLSYA 77 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccC---ceEEEE
Confidence 6899999999999999 89999999999999999999999999999998886 567899999976 3454 788999
Q ss_pred eCCCCcchhhhhhcccccCCcc-CCEEEEeCCee-ccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVV-SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i-~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
.|+...|+++|++ .++.+++ ++|+|+.||.+ ++.++..+++.|... ++.+|++..++..+.+|| ++.
T Consensus 78 ~q~~~~Gta~al~--~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~-----~~~~ti~~~~v~~p~~yG----vv~ 146 (286)
T TIGR01207 78 VQPSPDGLAQAFI--IGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR-----ESGATVFAYQVSDPERYG----VVE 146 (286)
T ss_pred EccCCCCHHHHHH--HHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhc-----CCCcEEEEEEccCHHHCc----eEE
Confidence 8988999999998 5666775 57999999975 688999999999764 466788888877777887 888
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhh-hhcccccChhcc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEH-FIKGVLINEEIL 251 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~d-fi~~il~~~~~~ 251 (627)
+| ++++|+.+.|+|. .| .++++++|+|+|++++++.+..... ..+.. .+.+++... +.
T Consensus 147 ~d-~~g~V~~i~EKp~------~~------------~s~~~~~GiYi~~~~i~~~l~~~~~-~~~ge~eitdv~~~~-l~ 205 (286)
T TIGR01207 147 FD-SNGRAISIEEKPA------QP------------KSNYAVTGLYFYDNRVVEIARQLKP-SARGELEITDLNRVY-LE 205 (286)
T ss_pred EC-CCCeEEEEEECCC------CC------------CCCEEEEEEEEEchHHHHHHhhcCC-CCCCcEeHHHHHHHH-HH
Confidence 88 6789999999873 11 4568899999999999887754221 11211 222333221 22
Q ss_pred cCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 252 DCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 252 g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
..++.++.+..|.+|.|++++++|.+++..+
T Consensus 206 ~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~ 236 (286)
T TIGR01207 206 EGRLSVELLGRGYAWLDTGTHDSLLEASNFI 236 (286)
T ss_pred cCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 2334555554462499999999999998765
No 39
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.96 E-value=8.2e-29 Score=246.53 Aligned_cols=231 Identities=17% Similarity=0.205 Sum_probs=182.8
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhc-ccccCCeeEEEE
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRK-EKSLVGTLITLI 94 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~~~~~~v~~i 94 (627)
|+|||||||.|+||+|+ .+||||+||+|+|||+|+|++|..+|+++|+|++++..+.+++|+++. +|+ +++.++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~---~~i~~~ 77 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFG---VRITYI 77 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcC---CeEEEE
Confidence 89999999999999999 899999999999999999999999999999999999999999999763 344 677788
Q ss_pred eCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
.+....|++++++ .+...+. ++|++++||++++.++.++++.|... ++.+|+++.+...+.+++ ++.+
T Consensus 78 ~~~~~~g~~~sl~--~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g----~~~~ 146 (236)
T cd04189 78 LQEEPLGLAHAVL--AARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEE-----DADASILLAEVEDPRRFG----VAVV 146 (236)
T ss_pred ECCCCCChHHHHH--HHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCceEEEEEECCCcccce----EEEE
Confidence 7888889999998 5566665 78999999999999999999999765 466777877766556665 6777
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccC
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDC 253 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~ 253 (627)
| +++|..+.++|. .+ .+++.++|+|+|+++++..+.........+.++.+++......|.
T Consensus 147 d--~~~v~~~~ek~~------~~------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~ 206 (236)
T cd04189 147 D--DGRIVRLVEKPK------EP------------PSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGR 206 (236)
T ss_pred c--CCeEEEEEECCC------CC------------CCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCC
Confidence 6 469999888762 01 245789999999999998775321111111112222222212567
Q ss_pred eeEEEEcCCCceeeecCChhhHHHHhHHHhh
Q psy1482 254 RLYCSVVDDIEYGISVKDWPSYQIASRDIVQ 284 (627)
Q Consensus 254 ~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~ 284 (627)
+|+++..+ + +|.+|+++++|.++++.+++
T Consensus 207 ~v~~~~~~-~-~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 207 RVGYSIVT-G-WWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cEEEEEcC-c-eEEeCCCHHHHHHHHHHHHh
Confidence 89999997 6 99999999999999998875
No 40
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.96 E-value=8.5e-29 Score=248.32 Aligned_cols=224 Identities=14% Similarity=0.134 Sum_probs=174.9
Q ss_pred EEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCe-------
Q psy1482 19 QAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGT------- 89 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~------- 89 (627)
||||||||.|+||+|+ .+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+++......++
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 6899999999999999 8999999999999999999999999999999999999999999997521100112
Q ss_pred ------------eEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEee
Q psy1482 90 ------------LITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYK 156 (627)
Q Consensus 90 ------------~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~ 156 (627)
.+++..+....|||+|++ .++++++ ++|++++||++++.++.++++.|++. ++.+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~--~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~-----~~d~tl~~~ 153 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLK--RVREYLDDEAFCFTYGDGVADIDIKALIAFHRKH-----GKKATVTAV 153 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHH--HHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 233444556689999998 5566776 68999999999999999999999876 466777654
Q ss_pred ccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCc
Q psy1482 157 KKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQT 236 (627)
Q Consensus 157 ~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~ 236 (627)
+ ++.+|| ++.+| +++|..+.++|. + .++++++|+|+|+|++|+++.+... ..
T Consensus 154 ~--~~~~yG----~v~~d--~~~V~~~~Ekp~-------~------------~~~~i~~Giyi~~~~il~~l~~~~~-~~ 205 (254)
T TIGR02623 154 Q--PPGRFG----ALDLE--GEQVTSFQEKPL-------G------------DGGWINGGFFVLNPSVLDLIDGDAT-VW 205 (254)
T ss_pred c--CCCccc----EEEEC--CCeEEEEEeCCC-------C------------CCCeEEEEEEEEcHHHHhhccccCc-hh
Confidence 3 345666 77777 469999999763 0 1357899999999999988865321 11
Q ss_pred hhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhh
Q psy1482 237 QEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQ 284 (627)
Q Consensus 237 ~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~ 284 (627)
..|+++.++ ...++++|..+ | ||.+|+++++|.+++..+-+
T Consensus 206 ~~d~i~~l~-----~~~~v~~~~~~-g-~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 206 EQEPLETLA-----QRGELSAYEHS-G-FWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred hhhHHHHHH-----hCCCEEEEeCC-C-EEecCCchHHHHHHHHHHHc
Confidence 335554443 23469999997 7 99999999999988876544
No 41
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.96 E-value=8e-29 Score=253.14 Aligned_cols=236 Identities=18% Similarity=0.196 Sum_probs=183.2
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhc-ccc-------
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRK-EKS------- 85 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~------- 85 (627)
.+|+|||+|||.|+||+|+ .+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|++.. .|.
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~ 86 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRV 86 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhh
Confidence 3799999999999999999 899999999999999999999999999999999999999999999752 121
Q ss_pred ------------cCCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeecc--------ccHHHHHHHHHHHhc
Q psy1482 86 ------------LVGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSN--------INLLSALKSFKKINS 144 (627)
Q Consensus 86 ------------~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~--------~~l~~~l~~h~~~~~ 144 (627)
.++..+.++.|....|+|+|++ .+++++. ++|+|++||++++ .++.++++.|++.
T Consensus 87 ~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~--~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~-- 162 (302)
T PRK13389 87 KRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVL--CAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDET-- 162 (302)
T ss_pred hhHHHHhhhhccccCceEEEeecCCCCChHHHHH--HHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhc--
Confidence 0134577777888899999998 4555564 6799999999874 7999999999765
Q ss_pred CCCCceEEEEeeccCCCCCCCCcceEEEEEC------CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceee
Q psy1482 145 MDSGAVALVLYKKKGQSKSSWKEDLIVAYEC------DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIM 218 (627)
Q Consensus 145 ~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~------~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 218 (627)
++. |+++.+.+.+.+|| ++.+|. ++++|..+.|+|... . ..++++++|+|
T Consensus 163 ---~~~-tl~~~~~~~~~~yG----vv~~~~~~~~~~~~~~V~~~~EKp~~~----~------------~~s~~~~~GiY 218 (302)
T PRK13389 163 ---GHS-QIMVEPVADVTAYG----VVDCKGVELAPGESVPMVGVVEKPKAD----V------------APSNLAIVGRY 218 (302)
T ss_pred ---CCC-EEEEEEcccCCcce----EEEecCcccccCCcceEEEEEECCCCC----C------------CCccEEEEEEE
Confidence 343 56666666667777 777752 245899999987410 0 13467999999
Q ss_pred ecCCchhhhhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 219 ICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 219 i~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
+|+++++++++....-...+.++.+++... +.+.+|++|.++ | +|.+|++|++|.+++.++
T Consensus 219 i~~~~il~~l~~~~~~~~~e~~l~d~i~~l-~~~~~v~~~~~~-G-~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 219 VLSADIWPLLAKTPPGAGDEIQLTDAIDML-IEKETVEAYHMK-G-KSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EECHHHHHHHHhCCCCCCCeeeHHHHHHHH-HHcCCEEEEEee-e-EEEeCCCHHHHHHHHHHH
Confidence 999999998865432111233344444322 345689999998 7 999999999999998875
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=1.4e-28 Score=242.27 Aligned_cols=217 Identities=19% Similarity=0.210 Sum_probs=173.0
Q ss_pred EEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 19 QAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
||||||||.|+||+|+ .+||||+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.+..|+ +.+.+..+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~---~~i~~~~~ 77 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRFG---LRITISDE 77 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccCC---ceEEEecC
Confidence 6999999999999999 899999999999999999999999999999999999999999999874454 67777666
Q ss_pred C-CCcchhhhhhcccccCCcc-CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEE
Q psy1482 97 D-GCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYE 174 (627)
Q Consensus 97 ~-~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d 174 (627)
. ...|++++++ .+...+. ++|++++||++++.++..+++.|++. ..++.+|+...+.+....++ ++.+|
T Consensus 78 ~~~~~g~~~~l~--~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g----~v~~d 148 (221)
T cd06422 78 PDELLETGGGIK--KALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWR---MDALLLLLPLVRNPGHNGVG----DFSLD 148 (221)
T ss_pred CCcccccHHHHH--HHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhc---cCCCceEEEEEEcCCCCCcc----eEEEC
Confidence 5 5678899888 4555565 68999999999999999999999751 12577777776655545555 77787
Q ss_pred CCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccCe
Q psy1482 175 CDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCR 254 (627)
Q Consensus 175 ~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~ 254 (627)
++++|..+.+++. .+++++|+|+|+++++..+.+. .+ ...|+++.+ +...+
T Consensus 149 -~~~~v~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~l~~~-~~-~~~d~~~~l-----~~~~~ 199 (221)
T cd06422 149 -ADGRLRRGGGGAV---------------------APFTFTGIQILSPELFAGIPPG-KF-SLNPLWDRA-----IAAGR 199 (221)
T ss_pred -CCCcEeecccCCC---------------------CceEEEEEEEEcHHHHhhCCcC-cc-cHHHHHHHH-----HHcCC
Confidence 5788998877652 2578999999999998877653 11 123444433 33457
Q ss_pred eEEEEcCCCceeeecCChhhHHHH
Q psy1482 255 LYCSVVDDIEYGISVKDWPSYQIA 278 (627)
Q Consensus 255 I~~~~~~~~~~~~~V~s~~~y~~a 278 (627)
+++|..+ + ||.+|+++++|.++
T Consensus 200 ~~~~~~~-g-~w~di~t~~~~~~a 221 (221)
T cd06422 200 LFGLVYD-G-LWFDVGTPERLLAA 221 (221)
T ss_pred eEEEecC-C-EEEcCCCHHHHhhC
Confidence 8888866 7 99999999999764
No 43
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.96 E-value=4.8e-28 Score=245.50 Aligned_cols=234 Identities=19% Similarity=0.223 Sum_probs=176.4
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhccccc---------
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSL--------- 86 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~--------- 86 (627)
|+|||||||.|+||+|+ .+||||+|++|+|||+|+|+++..+|+++|+|+++++.+++.+|+... |..
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRS-YELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCc-HHHHHHHHhccc
Confidence 79999999999999999 899999999999999999999999999999999999999999999642 210
Q ss_pred -----------CCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccc---cHHHHHHHHHHHhcCCCCceE
Q psy1482 87 -----------VGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNI---NLLSALKSFKKINSMDSGAVA 151 (627)
Q Consensus 87 -----------~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~---~l~~~l~~h~~~~~~~~~~~~ 151 (627)
.++++.++.++...|++++++ .+..+++ ++|+|++||.++.. ++..+++.|+.. ++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~--~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~-----~~~- 151 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVL--CAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKT-----GAS- 151 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHH--HHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHh-----CCC-
Confidence 135677888888899999998 4556665 67999999998764 499999999765 233
Q ss_pred EEEeeccC--CCCCCCCcceEEEEECC---CCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh
Q psy1482 152 LVLYKKKG--QSKSSWKEDLIVAYECD---SKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP 226 (627)
Q Consensus 152 T~~~~~~~--~~~~~~~~~~vv~~d~~---~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~ 226 (627)
++++.... ...+++ ++.+|.. +++|..+.|+|... . ..++++++|+|++++++|.
T Consensus 152 ~~~~~~~~~~~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~----~------------~~~~~~~~Giyi~~~~~~~ 211 (267)
T cd02541 152 VIAVEEVPPEDVSKYG----IVKGEKIDGDVFKVKGLVEKPKPE----E------------APSNLAIVGRYVLTPDIFD 211 (267)
T ss_pred EEEEEEcChhcCccce----EEEeecCCCCceEEeEEEECCCCC----C------------CCCceEEEEEEEcCHHHHH
Confidence 34444433 334555 8888841 35899999887310 0 1346788999999999998
Q ss_pred hhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHh
Q psy1482 227 LFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV 283 (627)
Q Consensus 227 ~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil 283 (627)
.+.+...-...+.++.+++... +...+|++|.++ | ||.+|+++++|.++++++.
T Consensus 212 ~l~~~~~~~~~e~~~~d~i~~l-~~~~~v~~~~~~-g-~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 212 ILENTKPGKGGEIQLTDAIAKL-LEEEPVYAYVFE-G-KRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHhCCCCCCCcEEHHHHHHHH-HhcCCEEEEEee-e-EEEeCCCHHHHHHHHHHHh
Confidence 8765211111222233333222 334489999998 7 9999999999999999863
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=1e-27 Score=236.02 Aligned_cols=217 Identities=17% Similarity=0.212 Sum_probs=174.6
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhc-ccccCCeeEEEEeC
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRK-EKSLVGTLITLIVS 96 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~~~~~~v~~i~~ 96 (627)
|||||||.|+||+|+ .+||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.+. .|+ +++.++.+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~---~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFG---VNISYVRE 77 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccC---ccEEEEEC
Confidence 699999999999999 999999999999999999999999999999999999999999999763 344 66777777
Q ss_pred CCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEECC
Q psy1482 97 DGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECD 176 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~~ 176 (627)
+...|++++++.+ +..+.++|+|++||.+++.++..+++.|+.. ++.+|+++.+..+...++ ++..| +
T Consensus 78 ~~~~g~~~~l~~~--~~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~g----~~~~d-~ 145 (220)
T cd06426 78 DKPLGTAGALSLL--PEKPTDPFLVMNGDILTNLNYEHLLDFHKEN-----NADATVCVREYEVQVPYG----VVETE-G 145 (220)
T ss_pred CCCCcchHHHHHH--HhhCCCCEEEEcCCEeeccCHHHHHHHHHhc-----CCCEEEEEEEcCCCCcce----EEEEC-C
Confidence 6778999998743 3444788999999999999999999999765 567788776654444454 77777 3
Q ss_pred CCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccCeeE
Q psy1482 177 SKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRLY 256 (627)
Q Consensus 177 ~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I~ 256 (627)
++|+.+.+++. .++++++|+|+|++.++..++++-.+. ..++++.++ ..|.+|+
T Consensus 146 -~~v~~~~ek~~--------------------~~~~~~~Giy~~~~~~~~~i~~~~~~~-l~~~~~~~i----~~~~~i~ 199 (220)
T cd06426 146 -GRITSIEEKPT--------------------HSFLVNAGIYVLEPEVLDLIPKNEFFD-MPDLIEKLI----KEGKKVG 199 (220)
T ss_pred -CEEEEEEECCC--------------------CCCeEEEEEEEEcHHHHhhcCCCCCcC-HHHHHHHHH----HCCCcEE
Confidence 89999988763 235678999999999998876542221 234444333 2456799
Q ss_pred EEEcCCCceeeecCChhhHHHHh
Q psy1482 257 CSVVDDIEYGISVKDWPSYQIAS 279 (627)
Q Consensus 257 ~~~~~~~~~~~~V~s~~~y~~a~ 279 (627)
+|..+ + +|.+|+++++|.+++
T Consensus 200 ~~~~~-~-~w~~igt~~dl~~a~ 220 (220)
T cd06426 200 VFPIH-E-YWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEeC-C-eEEeCCCHHHHHhhC
Confidence 99998 7 999999999998764
No 45
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.95 E-value=9.6e-28 Score=241.10 Aligned_cols=222 Identities=14% Similarity=0.106 Sum_probs=170.0
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeE------
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLI------ 91 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v------ 91 (627)
|||||||+|+||+|+ .+||||+||+|+|||+|+++.+..+|+++|+|+++++.+++++|+++..+...++++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 699999999999999 899999999999999999999999999999999999999999999763210011222
Q ss_pred -------------EEEeCCCCcchhhhhhcccccCCcc--CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEee
Q psy1482 92 -------------TLIVSDGCYSFGDVMRDLDGKAVIR--NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYK 156 (627)
Q Consensus 92 -------------~~i~~~~~~~~gdalr~l~~~~~i~--~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~ 156 (627)
+++.+....++|++++ .+++.+. ++|+|++||++++.++..+++.|... ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~--~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~-----~~~~tl~~~ 153 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLK--RVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSH-----GKLATVTAV 153 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHH--HHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 2222223466888887 5566664 67999999999999999999999765 577887765
Q ss_pred ccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCc
Q psy1482 157 KKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQT 236 (627)
Q Consensus 157 ~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~ 236 (627)
. +...++ ++.+| ++|+|..+.++|. + .++++++|+|+++|+++..+...
T Consensus 154 ~--~~~~~g----~v~~d-~~g~V~~~~ekp~-------~------------~~~~i~~Giyi~~~~l~~~l~~~----- 202 (253)
T cd02524 154 H--PPGRFG----ELDLD-DDGQVTSFTEKPQ-------G------------DGGWINGGFFVLEPEVFDYIDGD----- 202 (253)
T ss_pred c--CCCccc----EEEEC-CCCCEEEEEECCC-------C------------CCceEEEEEEEECHHHHHhhccc-----
Confidence 3 334555 78888 5789999999874 0 12467899999999999887653
Q ss_pred hhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 237 QEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 237 ~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
..++..+++.. .+...++++|.++ | +|.+|+++.+|..+.+.+
T Consensus 203 ~~~~~~d~l~~-li~~~~v~~~~~~-g-~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 203 DTVFEREPLER-LAKDGELMAYKHT-G-FWQCMDTLRDKQTLEELW 245 (253)
T ss_pred cchhhHHHHHH-HHhcCCEEEEecC-C-EEEeCcCHHHHHHHHHHH
Confidence 11222222222 2334588999988 7 999999999999988654
No 46
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.95 E-value=1.3e-27 Score=241.44 Aligned_cols=229 Identities=16% Similarity=0.181 Sum_probs=171.1
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccc----------
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKS---------- 85 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~---------- 85 (627)
|+|||||||.|+||+|+ .+||||+|++|+|||+|+|++|..+|+++|+|++++..+++.+|++.. |.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTS-YELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhccc-HHHHHHHHhhhh
Confidence 79999999999999999 899999999999999999999999999999999999999999999731 10
Q ss_pred ----------cCCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccc---cHHHHHHHHHHHhcCCCCceE
Q psy1482 86 ----------LVGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNI---NLLSALKSFKKINSMDSGAVA 151 (627)
Q Consensus 86 ----------~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~---~l~~~l~~h~~~~~~~~~~~~ 151 (627)
..+.++.++.+....|++++++ .+.+++. ++|+|++||.++.. ++..+++.|++. ++.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~--~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~-----~~~i 152 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVL--CAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKY-----GCSI 152 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHH--HHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHh-----CCCE
Confidence 0124566776778899999998 5566664 67999999998754 799999999876 3443
Q ss_pred EEEeeccC--CCCCCCCcceEEEEEC---CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh
Q psy1482 152 LVLYKKKG--QSKSSWKEDLIVAYEC---DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP 226 (627)
Q Consensus 152 T~~~~~~~--~~~~~~~~~~vv~~d~---~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~ 226 (627)
+++.... ...++| ++.+|. ++++|..+.|+|... . ..++++++|+|+|++++|.
T Consensus 153 -i~~~~~~~~~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~----~------------~~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 153 -IAVEEVPKEEVSKYG----VIDGEGVEEGLYEIKDMVEKPKPE----E------------APSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred -EEEEECChhhcccCc----eEEeccccCCceeEEEEEECCCCC----C------------CCCceEEEEEEECCHHHHH
Confidence 3333332 344555 777752 347999999987310 0 0345789999999999999
Q ss_pred hhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHH
Q psy1482 227 LFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIA 278 (627)
Q Consensus 227 ~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a 278 (627)
.+.+.......+.++.+++.. .+.+.+|++|.++ | ||.+|+++++|.++
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~-l~~~~~v~~~~~~-g-~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRK-LLEKETVYAYKFK-G-KRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHH-HHhcCCEEEEEcc-e-EEEeCCCHHHHhhC
Confidence 886532111112223333322 2344689999998 7 99999999999763
No 47
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.95 E-value=2.1e-27 Score=233.17 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=172.7
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcc-cccCCeeEEEEeC
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE-KSLVGTLITLIVS 96 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~-~~~~~~~v~~i~~ 96 (627)
|||||||.|+||+|+ .+||+|+|++|+|||+|+++.|..+|+++|+|+++++.+.+++|+.... |+ +++.++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~---~~i~~~~~ 77 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFG---VNIEYVVQ 77 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcC---ceEEEEeC
Confidence 699999999999999 8999999999999999999999999999999999998899999997632 43 67888877
Q ss_pred CCCcchhhhhhcccccCCc-cCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEEC
Q psy1482 97 DGCYSFGDVMRDLDGKAVI-RNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYEC 175 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i-~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~ 175 (627)
....|++++++ .+...+ .++|+|++||++++.++.++++.|+.. ++.+|+++.+.....+++ ++.+|
T Consensus 78 ~~~~g~~~al~--~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~v~~d- 145 (217)
T cd04181 78 EEPLGTAGAVR--NAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREK-----GADATIAVKEVEDPSRYG----VVELD- 145 (217)
T ss_pred CCCCccHHHHH--HhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCCEEEEEEEcCCCCcce----EEEEc-
Confidence 77789999998 445555 678999999999999999999988865 577888888776555555 78888
Q ss_pred CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccCee
Q psy1482 176 DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRL 255 (627)
Q Consensus 176 ~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I 255 (627)
++++|..+.+++.. + ..+++++|+|+|++++++++.+... ...+++..++... +...+|
T Consensus 146 ~~~~v~~~~ek~~~------~------------~~~~~~~Giy~~~~~~~~~l~~~~~--~~~~~~~~~~~~l-~~~~~v 204 (217)
T cd04181 146 DDGRVTRFVEKPTL------P------------ESNLANAGIYIFEPEILDYIPEILP--RGEDELTDAIPLL-IEEGKV 204 (217)
T ss_pred CCCcEEEEEECCCC------C------------CCCEEEEEEEEECHHHHHhhhhcCC--cccccHHHHHHHH-HhcCCE
Confidence 56899999987730 1 1357899999999999998877543 2334444444332 444689
Q ss_pred EEEEcCCCceeeecC
Q psy1482 256 YCSVVDDIEYGISVK 270 (627)
Q Consensus 256 ~~~~~~~~~~~~~V~ 270 (627)
++|..+ | +|.+|+
T Consensus 205 ~~~~~~-g-~w~dig 217 (217)
T cd04181 205 YGYPVD-G-YWLDIG 217 (217)
T ss_pred EEEEcC-C-EEecCC
Confidence 999998 7 999885
No 48
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.95 E-value=1e-26 Score=229.27 Aligned_cols=218 Identities=20% Similarity=0.284 Sum_probs=172.6
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcc-cccCCeeEEEEeC
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE-KSLVGTLITLIVS 96 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~-~~~~~~~v~~i~~ 96 (627)
|||||||.|+||+|+ .+||+|+|++|+|||+|++++|.++|+++|+|+++++.+.+.+|+.... |+ +.+.+..+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~---~~~~~~~~ 77 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGG---IRIYYVIE 77 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccC---ceEEEEEC
Confidence 699999999999999 8999999999999999999999999999999999988899999997532 33 55666666
Q ss_pred CCCcchhhhhhcccccCCc-cCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEEC
Q psy1482 97 DGCYSFGDVMRDLDGKAVI-RNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYEC 175 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i-~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~ 175 (627)
....|+++++. .+...+ .++|++++||++++.++..+++.|++. ++.+++++.+.....+++ ++.+|
T Consensus 78 ~~~~G~~~~l~--~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~----~v~~d- 145 (223)
T cd06915 78 PEPLGTGGAIK--NALPKLPEDQFLVLNGDTYFDVDLLALLAALRAS-----GADATMALRRVPDASRYG----NVTVD- 145 (223)
T ss_pred CCCCcchHHHH--HHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhC-----CCcEEEEEEECCCCCcce----eEEEC-
Confidence 77788998887 445555 578999999999999999999999764 466777777665444554 77787
Q ss_pred CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhcccCee
Q psy1482 176 DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILDCRL 255 (627)
Q Consensus 176 ~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g~~I 255 (627)
++++|..+.+++.. ..++++++|+|+|+|+++..+.+. .+....++++.++ .+.+|
T Consensus 146 ~~~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~l~-----~~~~v 201 (223)
T cd06915 146 GDGRVIAFVEKGPG------------------AAPGLINGGVYLLRKEILAEIPAD-AFSLEADVLPALV-----KRGRL 201 (223)
T ss_pred CCCeEEEEEeCCCC------------------CCCCcEEEEEEEECHHHHhhCCcc-CCChHHHHHHHHH-----hcCcE
Confidence 56899999887630 035688999999999999877653 1211334444332 23389
Q ss_pred EEEEcCCCceeeecCChhhHHHH
Q psy1482 256 YCSVVDDIEYGISVKDWPSYQIA 278 (627)
Q Consensus 256 ~~~~~~~~~~~~~V~s~~~y~~a 278 (627)
++|.++ + +|.+|+++++|..+
T Consensus 202 ~~~~~~-~-~~~dI~t~~dl~~a 222 (223)
T cd06915 202 YGFEVD-G-YFIDIGIPEDYARA 222 (223)
T ss_pred EEEecC-C-eEEecCCHHHHHhh
Confidence 999998 7 99999999999876
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.1e-25 Score=210.55 Aligned_cols=239 Identities=16% Similarity=0.204 Sum_probs=185.4
Q ss_pred CceEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcc--------cc
Q psy1482 16 EVLQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE--------KS 85 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~--------~~ 85 (627)
..++|||.|||+||||.|. ..||-||||.+||+|+|+++.+..+|+++|++|++.+...|++|+..+. -+
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~ 82 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG 82 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence 3689999999999999999 8999999999999999999999999999999999998889999886521 00
Q ss_pred -----------cCCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeCCeeccc---cHHHHHHHHHHHhcCCCCce
Q psy1482 86 -----------LVGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVVSNI---NLLSALKSFKKINSMDSGAV 150 (627)
Q Consensus 86 -----------~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i~~~---~l~~~l~~h~~~~~~~~~~~ 150 (627)
....++.++.|..+.|+|+|+. .++.+++ ++|.|+.||.++.. .+.++++.|.+.. ++
T Consensus 83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl--~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g----~s- 155 (291)
T COG1210 83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVL--CAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETG----GS- 155 (291)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCCcchhHHH--hhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhC----Cc-
Confidence 0356799999999999999998 7899997 67999999998753 6888999988873 22
Q ss_pred EEEEeeccC--CCCCCCCcceEEE----EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCch
Q psy1482 151 ALVLYKKKG--QSKSSWKEDLIVA----YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAV 224 (627)
Q Consensus 151 ~T~~~~~~~--~~~~~~~~~~vv~----~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~v 224 (627)
++.+.+++ ..++|| ++. ++....+|..+.|||... +.++||.-.|-|+++|++
T Consensus 156 -vi~v~ev~~e~v~kYG----vi~~g~~~~~~~~~v~~~VEKP~~~----------------~APSnlai~GRYil~p~I 214 (291)
T COG1210 156 -VIGVEEVPPEDVSKYG----VIDPGEPVEKGVYKVKGMVEKPKPE----------------EAPSNLAIVGRYVLTPEI 214 (291)
T ss_pred -EEEEEECCHHHCcccc----eEecCccccCCeEEEEEEEECCCCC----------------CCCcceeeeeeeecCHHH
Confidence 34556654 456777 776 332235889999998411 127899999999999999
Q ss_pred hhhhhcCCCCCchhhhhcccccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhc
Q psy1482 225 PPLFSDNFDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQR 285 (627)
Q Consensus 225 l~~~~~~fd~~~~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~ 285 (627)
|..++....-...+--+.+.+.. .+....+++|.+. | -.+|+|+...|.+++.++.-+
T Consensus 215 Fd~L~~~~~G~ggEiQLTDai~~-L~~~~~v~a~~~~-G-kryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 215 FDILEETKPGAGGEIQLTDAIKK-LLKKEPVLAYVFE-G-KRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred HHHHhhCCCCCCCEeeHHHHHHH-HHhhCcEEEEEec-c-cEEccCCcccHHHHHHHHHhh
Confidence 99998742211111112222211 2445789999999 6 789999999999999886543
No 50
>KOG2297|consensus
Probab=99.92 E-value=5.4e-25 Score=210.89 Aligned_cols=155 Identities=21% Similarity=0.326 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHhhHHHHHHH
Q psy1482 468 FYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKN-KPDMDMKSFHTHMMSKINYFLPLFKN 546 (627)
Q Consensus 468 F~~ev~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ail~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~ 546 (627)
=++|++.-|+..+.++.+.+++++-++.-....|++..+|+.++|..+|+.+. +.+ .....+++.+.++.|+|||..
T Consensus 253 a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKk--eelva~qalrhlK~yaPLL~a 330 (412)
T KOG2297|consen 253 ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKK--EELVAEQALRHLKQYAPLLAA 330 (412)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchH--HHHHHHHHHHHHHhhhHHHHH
Confidence 47788888999998999999999999999999999999999999999999988 432 344567888999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhhhcCC----chhHHhhhHHHHHHhccccCC
Q psy1482 547 YIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE----PSSLRKSVEPFVKWLLEADEE 622 (627)
Q Consensus 547 ~~~~~~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~~~~~----~~~~~~~~~~fi~WL~eaeee 622 (627)
|++..+..+.+|+.+|.||+++-.+++.|+.|+..||..|||+||.|++||.++. +..|.++++|||+||++||||
T Consensus 331 f~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~FleqmkkFVeWL~~AEEE 410 (412)
T KOG2297|consen 331 FCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKKFVEWLQNAEEE 410 (412)
T ss_pred HhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999998876 578999999999999999999
Q ss_pred CC
Q psy1482 623 SE 624 (627)
Q Consensus 623 ~~ 624 (627)
|+
T Consensus 411 sE 412 (412)
T KOG2297|consen 411 SE 412 (412)
T ss_pred cC
Confidence 75
No 51
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.3e-23 Score=208.26 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=151.7
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCC---hHHHHHHHHhcccccCCeeEEEE
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH---VNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~---~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
+||||||+|+||+|+ .+||||+|++|+|||+|+|+.|..+|+++++|++++. ...+..++.... .++.+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~---~~~~i~~- 76 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA---PNATVVE- 76 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC---CCCEEEE-
Confidence 489999999999999 8999999999999999999999999999999998742 133333443211 2345533
Q ss_pred eCCCCcchhhhhhcccccCCc--cCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI--RNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i--~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
.+....|+++++. .++..+ .++|++++||++++.++..++..|... +...++++... +..+++ ++.
T Consensus 77 ~~~~~~g~~~~l~--~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~-~~~~~~----~v~ 144 (231)
T cd04183 77 LDGETLGAACTVL--LAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRER-----DLDGGVLTFFS-SHPRWS----YVK 144 (231)
T ss_pred eCCCCCcHHHHHH--HHHhhcCCCCCEEEEecceeeccCHHHHHHHhhcc-----CCceEEEEEeC-CCCCeE----EEE
Confidence 3556788898887 455556 367999999999999999999888654 23344443333 223444 777
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCc-hh-hhhhc---CCCCCchhhhhcccccC
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPA-VP-PLFSD---NFDFQTQEHFIKGVLIN 247 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~-vl-~~~~~---~fd~~~~~dfi~~il~~ 247 (627)
+| ++|+|..+.+++. .+.++++|+|+|++. .+ .++.+ .........++.+++..
T Consensus 145 ~d-~~~~v~~~~ek~~--------------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~ 203 (231)
T cd04183 145 LD-ENGRVIETAEKEP--------------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNE 203 (231)
T ss_pred EC-CCCCEEEeEEcCC--------------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHH
Confidence 88 5789988877541 235789999999997 33 44432 11001111223333322
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhH
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSY 275 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y 275 (627)
....|.+|+++.++++ +|.+|+++++|
T Consensus 204 ~~~~g~~v~~~~~~~~-~w~di~t~~dl 230 (231)
T cd04183 204 LILDGKKVGIYLIDKD-DYHSFGTPEDL 230 (231)
T ss_pred HHHcCCEEEEEEeccc-cEEEcCChHhc
Confidence 2125678999999657 99999999876
No 52
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.90 E-value=7.3e-24 Score=205.20 Aligned_cols=183 Identities=20% Similarity=0.277 Sum_probs=137.4
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhc-ccccC--CeeEEE
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRK-EKSLV--GTLITL 93 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~~~--~~~v~~ 93 (627)
|||||||+|+||+|+ .+||+|+||+|+ |||+|++++|..+|+++|+|+++++.+++.+|+.+. .|+.. ...+.+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI 80 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence 699999999999999 899999999999 999999999999999999999999999999999753 34310 111333
Q ss_pred Ee------CCCCcchhhhhhcccccCCcc----CCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCC
Q psy1482 94 IV------SDGCYSFGDVMRDLDGKAVIR----NDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKS 163 (627)
Q Consensus 94 i~------~~~~~~~gdalr~l~~~~~i~----~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~ 163 (627)
+. ++...|+|++++ .+...+. ++|+|++||++++.++..+++.|+++ ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~Gta~al~--~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~-----~~~~t~~~~------- 146 (200)
T cd02508 81 LPPQQRKGGDWYRGTADAIY--QNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIES-----GADITVVYK------- 146 (200)
T ss_pred eCcccCCCCCcccCcHHHHH--HHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEh-------
Confidence 32 356789999998 4555563 56999999999999999999999875 355555422
Q ss_pred CCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCCCCCchhhhhc
Q psy1482 164 SWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNFDFQTQEHFIK 242 (627)
Q Consensus 164 ~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~fd~~~~~dfi~ 242 (627)
+++|+|+|+++++. ++... ......+++.
T Consensus 147 -------------------------------------------------~~~g~yi~~~~~~~~~l~~~-~~~~~~~~~~ 176 (200)
T cd02508 147 -------------------------------------------------ASMGIYIFSKDLLIELLEED-AADGSHDFGK 176 (200)
T ss_pred -------------------------------------------------hcCEEEEEEHHHHHHHHHHH-hccCcchhHH
Confidence 46899999999884 44431 1111233333
Q ss_pred ccccChhcccCeeEEEEcCCCceeeec
Q psy1482 243 GVLINEEILDCRLYCSVVDDIEYGISV 269 (627)
Q Consensus 243 ~il~~~~~~g~~I~~~~~~~~~~~~~V 269 (627)
+++... +...++++|..+ | ||.+|
T Consensus 177 d~i~~l-~~~~~v~~~~~~-g-~w~di 200 (200)
T cd02508 177 DIIPAM-LKKLKIYAYEFN-G-YWADI 200 (200)
T ss_pred HHHHHH-hccCcEEEEEeC-C-eEecC
Confidence 333222 334689999998 7 99875
No 53
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.90 E-value=2.7e-23 Score=205.81 Aligned_cols=220 Identities=21% Similarity=0.224 Sum_probs=152.2
Q ss_pred EEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 20 AVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|||||||.|+||+|+ .+||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+++.+|++.. ..+.++.++
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~------~~~~~~~~~ 74 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY------PNIKFVYNP 74 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc------CCeEEEeCc
Confidence 699999999999999 899999999999999999999999999999999999999999998752 235555544
Q ss_pred C--CcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEEC
Q psy1482 98 G--CYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYEC 175 (627)
Q Consensus 98 ~--~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~ 175 (627)
. ..|+++++. .+..++.++|++++||++++. .+++.|.+. ++.+|+++.+..+....+ ..+...|
T Consensus 75 ~~~~~g~~~s~~--~~~~~~~~~~lv~~~D~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~- 141 (229)
T cd02523 75 DYAETNNIYSLY--LARDFLDEDFLLLEGDVVFDP---SILERLLSS-----PADNAILVDKKTKEWEDE--YVKDLDD- 141 (229)
T ss_pred chhhhCcHHHHH--HHHHHcCCCEEEEeCCEecCH---HHHHHHHcC-----CCCCeEEEccCccccccc--ceeeecC-
Confidence 3 477778877 455566788999999999866 456667654 466777777633221111 1122222
Q ss_pred CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCC----CCchhhhhcccccChhcc
Q psy1482 176 DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFD----FQTQEHFIKGVLINEEIL 251 (627)
Q Consensus 176 ~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd----~~~~~dfi~~il~~~~~~ 251 (627)
.++++.+.+++. .+ ...+++++|+|+|+++++..+.+... .....+++.+++... +.
T Consensus 142 -~~~v~~~~~k~~------~~-----------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l-~~ 202 (229)
T cd02523 142 -AGVLLGIISKAK------NL-----------EEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRL-IS 202 (229)
T ss_pred -ccceEeecccCC------Cc-----------chhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHH-Hh
Confidence 367888877653 01 02457899999999999886644211 001223333333221 22
Q ss_pred cCeeEEEEcCCCceeeecCChhhHHHH
Q psy1482 252 DCRLYCSVVDDIEYGISVKDWPSYQIA 278 (627)
Q Consensus 252 g~~I~~~~~~~~~~~~~V~s~~~y~~a 278 (627)
..++.++.+..+ +|.+|+++++|.++
T Consensus 203 ~~~~~v~~~~~~-~w~dI~~~ed~~~a 228 (229)
T cd02523 203 EEGVKVKDISDG-FWYEIDDLEDLERA 228 (229)
T ss_pred hcCeeEEEcCCC-CEEEeCCHHHHHhh
Confidence 123444444446 99999999999876
No 54
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.88 E-value=1.6e-22 Score=204.73 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=139.3
Q ss_pred eEEEEEeCCCCCCCCcC---CCCccccccCC-eehHHHHHHHHHhC-CCcEEEEEecC-ChHHHHHHHHhcccccCCeeE
Q psy1482 18 LQAVIVTDTFNRNFFPV---PEPYCLLPLVN-KCLLEYTLEHLHLS-GIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLI 91 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl---~~PK~Llpi~g-~pli~~~l~~L~~~-gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v 91 (627)
|++||||||.|+||+|+ .+||+|+|++| +|||+|+++.|... |+++|+|++++ +.+.+++++.. .. ..+
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~--~~---~~~ 75 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE--GL---PEE 75 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh--cC---CCc
Confidence 78999999999999999 58999999999 99999999999998 59999999996 56778888865 11 346
Q ss_pred EEEeCCCCcchhhhhhcccccCCcc-----CCEEEEeCCeecc--ccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCC
Q psy1482 92 TLIVSDGCYSFGDVMRDLDGKAVIR-----NDFILVSGDVVSN--INLLSALKSFKKINSMDSGAVALVLYKKKGQSKSS 164 (627)
Q Consensus 92 ~~i~~~~~~~~gdalr~l~~~~~i~-----~dfll~~gD~i~~--~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~ 164 (627)
.++.++...+|++|+.. +...+. +.++|++||++.. .++..+++.|....+ .++.+|+.+++..+...|
T Consensus 76 ~ii~ep~~~gTa~ai~~--a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~--~~~~vt~gi~p~~~~t~y 151 (274)
T cd02509 76 NIILEPEGRNTAPAIAL--AALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRPETGY 151 (274)
T ss_pred eEEECCCCCCcHHHHHH--HHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHH--cCCEEEEEeeecCCCCCe
Confidence 77778888999998873 333332 4588899999875 567777876665322 368899999888777777
Q ss_pred CCcceEEEEECCC-C---eEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 165 WKEDLIVAYECDS-K---KLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 165 ~~~~~vv~~d~~~-~---~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
| ++..+... + +|..|.|||+... ....+. -...++++|||+|+++++
T Consensus 152 G----yI~~~~~~~~~~~~V~~f~EKP~~~~----a~~~~~------~g~~~wNsGiyi~~~~~l 202 (274)
T cd02509 152 G----YIEAGEKLGGGVYRVKRFVEKPDLET----AKEYLE------SGNYLWNSGIFLFRAKTF 202 (274)
T ss_pred E----EEEeCCcCCCCceEEeEEEECcChHH----HHHHhh------cCCeEEECceeeeeHHHH
Confidence 7 88887332 3 8999999986111 001111 034588999999996544
No 55
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.87 E-value=1.1e-21 Score=194.14 Aligned_cols=221 Identities=17% Similarity=0.230 Sum_probs=158.1
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCC
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGC 99 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~ 99 (627)
|||||||.|+||+| .+||+|+|++|+|||+|+|+.|..+|+++|+|++++..+++.+++.. .++.++.+...
T Consensus 1 aiIlaaG~g~R~~~-~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-------~~~~~~~~~~~ 72 (229)
T cd02540 1 AVILAAGKGTRMKS-DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-------PNVEFVLQEEQ 72 (229)
T ss_pred CEEEeCCCCccCCC-CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-------CCcEEEECCCC
Confidence 69999999999998 78999999999999999999999999999999999888899888865 23566767777
Q ss_pred cchhhhhhcccccCCcc---CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEE
Q psy1482 100 YSFGDVMRDLDGKAVIR---NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYE 174 (627)
Q Consensus 100 ~~~gdalr~l~~~~~i~---~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d 174 (627)
.|++++++ .+...+. ++|+++.||. +...++..+++.|++. ++..++...+...+..++ .+..+
T Consensus 73 ~g~~~ai~--~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~~p~~~~----~~~~~ 141 (229)
T cd02540 73 LGTGHAVK--QALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA-----GADVTVLTAELEDPTGYG----RIIRD 141 (229)
T ss_pred CCCHHHHH--HHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEEcCCCCCcc----EEEEc
Confidence 88999988 4455553 5699999998 4567899999988764 355555555555555555 66666
Q ss_pred CCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh-hhhhcCCCCC-chhhhhcccccChhccc
Q psy1482 175 CDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP-PLFSDNFDFQ-TQEHFIKGVLINEEILD 252 (627)
Q Consensus 175 ~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl-~~~~~~fd~~-~~~dfi~~il~~~~~~g 252 (627)
++|+|..+.+++... +.+ ...+++++|+|+|++..+ .+++...... ....++.+++......|
T Consensus 142 -~~~~v~~~~ek~~~~-----~~~---------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g 206 (229)
T cd02540 142 -GNGKVLRIVEEKDAT-----EEE---------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADG 206 (229)
T ss_pred -CCCCEEEEEECCCCC-----hHH---------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCC
Confidence 568999988765300 000 023578999999998754 5555422111 12333444443322357
Q ss_pred CeeEEEEcCCCceeeecCChhh
Q psy1482 253 CRLYCSVVDDIEYGISVKDWPS 274 (627)
Q Consensus 253 ~~I~~~~~~~~~~~~~V~s~~~ 274 (627)
.+|+++..++..-|+.|+++.+
T Consensus 207 ~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 207 LKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred CEEEEEEcCCcceEecCCChHh
Confidence 7899999973225677888754
No 56
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=9.7e-21 Score=178.33 Aligned_cols=222 Identities=17% Similarity=0.200 Sum_probs=150.9
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEe-cCChHHHHHHHHhcccccCCeeEEEE
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFC-TSHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
++|+|||||||+|+||.| +.||||+.++|+|+|+|+|++|+++|+++++||| ++..+.++.++.+.. ++..++
T Consensus 2 ~~~kavILAAG~GsRlg~-~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~-----~~~~iv 75 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP-DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP-----FNAKIV 75 (239)
T ss_pred CceeEEEEecccccccCC-CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC-----cceEEE
Confidence 579999999999999999 8999999999999999999999999999999999 678999999998743 467777
Q ss_pred eCCCCc--chhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCC--CcceE
Q psy1482 95 VSDGCY--SFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSW--KEDLI 170 (627)
Q Consensus 95 ~~~~~~--~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~v 170 (627)
..+.+. +++..|. .+++..++.|++++||+++...+.+.+- +. . .-++++-..+ ++. ++...
T Consensus 76 ~N~~y~ktN~~~Sl~--~akd~~~~~fii~~sD~vye~~~~e~l~---~a-----~-~~~li~d~~~---~~~~~~ea~k 141 (239)
T COG1213 76 INSDYEKTNTGYSLL--LAKDYMDGRFILVMSDHVYEPSILERLL---EA-----P-GEGLIVDRRP---RYVGVEEATK 141 (239)
T ss_pred eCCCcccCCceeEEe--eehhhhcCcEEEEeCCEeecHHHHHHHH---hC-----c-CCcEEEeccc---cccccCceeE
Confidence 765443 3344443 6677888899999999999876544332 11 0 1112222211 222 23334
Q ss_pred EEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCC----CCCchhhhhccccc
Q psy1482 171 VAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNF----DFQTQEHFIKGVLI 246 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~f----d~~~~~dfi~~il~ 246 (627)
+ .+ ++|++..+.+.-. ..+-.++|+++++++++..+.+.. .+. ...+.+....
T Consensus 142 v-~~-e~G~i~~igK~l~--------------------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~-~~~~~~~~~~ 198 (239)
T COG1213 142 V-KD-EGGRIVEIGKDLT--------------------EYDGEDIGIFILSDSIFEDTYELLVERSEYD-YREVEKEAGL 198 (239)
T ss_pred E-Ee-cCCEEehhcCCcc--------------------cccceeeeeEEechHHHHHHHHHHhhhhhHH-HHHHHHHhCC
Confidence 4 34 6899998877542 456789999999999776444321 111 1122211110
Q ss_pred ChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHhhcc
Q psy1482 247 NEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRW 286 (627)
Q Consensus 247 ~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil~~~ 286 (627)
. -..+..+ +.+. +|++|++|+++.++.+.+...+
T Consensus 199 ~----~~~~di~-~~g~-~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 199 P----FTEVDIH-VDGL-FWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred c----eEEeecc-ccCc-eeEecCCHHHHHHHHHHHHHHH
Confidence 0 0111112 2334 9999999999999988766543
No 57
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=99.85 E-value=1.8e-21 Score=159.06 Aligned_cols=76 Identities=43% Similarity=0.816 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhhhcCC-------chhHHhhhHHHHHHhccccCCCC
Q psy1482 552 SAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE-------PSSLRKSVEPFVKWLLEADEESE 624 (627)
Q Consensus 552 ~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~~~~~-------~~~~~~~~~~fi~WL~eaeee~~ 624 (627)
++|+++|.|+|.||.+++.+.+.|++||+.||++|||+|++|++||++.. .+++|++++|||+||++||||||
T Consensus 2 ~~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~~~~~~~~~~~~~~r~~~~~fi~WL~eaeeE~~ 81 (84)
T PF02020_consen 2 DDQVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAILEWYEDSKPAVDGEGRAKVRKQAQPFIEWLEEAEEESD 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC-SSSSCHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhccCccCC
Confidence 57999999999999998899999999999999999999999999998822 56799999999999999999999
Q ss_pred CCC
Q psy1482 625 EDD 627 (627)
Q Consensus 625 ee~ 627 (627)
+||
T Consensus 82 eed 84 (84)
T PF02020_consen 82 EED 84 (84)
T ss_dssp ---
T ss_pred CCC
Confidence 886
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.84 E-value=2.3e-20 Score=202.20 Aligned_cols=233 Identities=13% Similarity=0.120 Sum_probs=160.1
Q ss_pred eEEEEEeCCCCCCCCcC---CCCccccccCC-eehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHhcccccCCee-E
Q psy1482 18 LQAVIVTDTFNRNFFPV---PEPYCLLPLVN-KCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTL-I 91 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl---~~PK~Llpi~g-~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~-v 91 (627)
|.|||||||.|+||+|+ .+||+|+|++| +|||+|+++.|...|+++++|+++. +...+++.+... + ++ .
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~--~---~~~~ 75 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI--G---KLAS 75 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc--C---CCcc
Confidence 68999999999999999 47999999977 8999999999999999999999984 455666666542 1 22 3
Q ss_pred EEEeCCCCcchhhhhhcccccCCc----c-CC-EEEEeCCeecc--ccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCC
Q psy1482 92 TLIVSDGCYSFGDVMRDLDGKAVI----R-ND-FILVSGDVVSN--INLLSALKSFKKINSMDSGAVALVLYKKKGQSKS 163 (627)
Q Consensus 92 ~~i~~~~~~~~gdalr~l~~~~~i----~-~d-fll~~gD~i~~--~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~ 163 (627)
.++.++...+||.|+.. +...+ . ++ |+|++||++.. ..|..+++.+....+. ++.+|+.+++..+...
T Consensus 76 ~~i~Ep~~~gTa~ai~~--aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~--~~lvtlgi~p~~p~t~ 151 (468)
T TIGR01479 76 NIILEPVGRNTAPAIAL--AALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAE--GKLVTFGIVPTHPETG 151 (468)
T ss_pred eEEecccccCchHHHHH--HHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCCCCC
Confidence 57778888999998773 22222 2 34 88999997653 3588888877543322 5789999988877788
Q ss_pred CCCcceEEEEEC-----CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecC------------Cchhh
Q psy1482 164 SWKEDLIVAYEC-----DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICS------------PAVPP 226 (627)
Q Consensus 164 ~~~~~~vv~~d~-----~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s------------~~vl~ 226 (627)
|| ++..++ ..++|..|.|||+.. .....+. -.+.++|+|||+++ |+++.
T Consensus 152 YG----yI~~~~~~~~~~~~~V~~f~EKP~~~----~a~~~l~------~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~ 217 (468)
T TIGR01479 152 YG----YIRRGEPLAGEDVYQVQRFVEKPDLA----TAQAYLE------SGDYYWNSGMFLFRASRYLAELKKHAPDIYE 217 (468)
T ss_pred ce----EEEeCCccCCCCceEEeEEEECCChH----HHHHHHh------cCCeEEEeeEEEEEHHHHHHHHHHHCHHHHH
Confidence 87 887763 125899999998611 1111111 13468999999999 55554
Q ss_pred hhhcCCC---CCch-----hhhhc---------ccccChhcccCeeEEEEcCCCceeeecCChhhHHHHh
Q psy1482 227 LFSDNFD---FQTQ-----EHFIK---------GVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIAS 279 (627)
Q Consensus 227 ~~~~~fd---~~~~-----~dfi~---------~il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~ 279 (627)
.+...+. .... .+..+ .+++ ...++++.... . .|.|+|+|.++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmE----k~~~v~vv~~~-~-~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 218 ACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVME----KTADAVVVPMD-A-GWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeE----cCCcEEEEeCC-C-CccccCCHHHHHHhh
Confidence 4432111 0000 11111 2222 23457777665 4 799999999987754
No 59
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.81 E-value=5.5e-19 Score=176.79 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=152.4
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
+-|||||+|.++||. ||+|+|++|+|||+|+++.|..+|+++|+|+++ .+.+.+++.. ++ .++.+..+.
T Consensus 3 ~~~iIlA~g~S~R~~----~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~--~~---~~v~~~~~~ 71 (245)
T PRK05450 3 FLIIIPARYASTRLP----GKPLADIGGKPMIVRVYERASKAGADRVVVATD--DERIADAVEA--FG---GEVVMTSPD 71 (245)
T ss_pred eEEEEecCCCCCCCC----CCcccccCCcCHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH--cC---CEEEECCCc
Confidence 568999999999994 699999999999999999999999999998876 3667777764 22 445444455
Q ss_pred CCcchhhhhhcccccCCccCC-EEEEeCCe-e-ccccHHHHHHHHHHHhcCCCCceEEEEeecc------CCCCCCCCcc
Q psy1482 98 GCYSFGDVMRDLDGKAVIRND-FILVSGDV-V-SNINLLSALKSFKKINSMDSGAVALVLYKKK------GQSKSSWKED 168 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i~~d-fll~~gD~-i-~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~------~~~~~~~~~~ 168 (627)
...+++.+...+........+ +++++||+ + ....+..+++.|+.. ++..++++.+. ..+..++
T Consensus 72 ~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--- 143 (245)
T PRK05450 72 HPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP-----EADMATLAVPIHDAEEAFNPNVVK--- 143 (245)
T ss_pred CCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC-----CCCeEeeeeecCCHHHhcCcCCCE---
Confidence 556666655432222112334 88899998 4 456788888888653 23333333333 2222333
Q ss_pred eEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCC--C--Cchhhhhccc
Q psy1482 169 LIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFD--F--QTQEHFIKGV 244 (627)
Q Consensus 169 ~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd--~--~~~~dfi~~i 244 (627)
++ +| ++|+|+++.+++..... +.. +.-+..+++.++|||+|++.++..+.+... + ....++++ +
T Consensus 144 -v~-~d-~~g~v~~~~e~~~~~~~-----~~~---~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 211 (245)
T PRK05450 144 -VV-LD-ADGRALYFSRAPIPYGR-----DAF---ADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLR-A 211 (245)
T ss_pred -EE-eC-CCCcEEEecCCCCCCCC-----Ccc---ccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHH-H
Confidence 44 77 68999999998731100 000 000113589999999999999987765311 1 11112221 2
Q ss_pred ccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 245 LINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 245 l~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
+ ..|.+|+++..++. +|.+|++|++|..+++.+
T Consensus 212 ~----~~g~~v~~~~~~~~-~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 212 L----ENGYRIHVVVVEEA-PSIGVDTPEDLERVRALL 244 (245)
T ss_pred H----HCCCceEEEEeCCC-CCCCcCCHHHHHHHHHHh
Confidence 2 35789999998865 899999999999998653
No 60
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.80 E-value=1.2e-18 Score=173.60 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=150.8
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhC-CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLS-GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
+.|||||+|.++||. ||+|+|++|+|||+|+++.|..+ |+++|+|++++ +.+.+++.+ ++ +++.+..+
T Consensus 2 ~~~iIlA~g~s~R~~----~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--~~---~~~~~~~~ 70 (239)
T cd02517 2 VIVVIPARYASSRLP----GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--FG---GKVVMTSP 70 (239)
T ss_pred EEEEEecCCCCCCCC----CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--cC---CEEEEcCc
Confidence 579999999999996 59999999999999999999998 99999998763 678888865 22 44433333
Q ss_pred CCCcchhhhhhcccccCCcc--CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCC---CCCCcce
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR--NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSK---SSWKEDL 169 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~--~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~ 169 (627)
....+++++...+ ..+-. +.|++++||+ +....+..+++.|+.. .++.+|+++.+...+. .++ ...
T Consensus 71 ~~~~gt~~~~~~~--~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 143 (239)
T cd02517 71 DHPSGTDRIAEVA--EKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD----PGVDMATLATPISDEEELFNPN-VVK 143 (239)
T ss_pred ccCchhHHHHHHH--HhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----CCCCEEEEEEEcCCHHHccCCC-CCE
Confidence 4456777655432 12212 4599999996 4567889999888643 1466777776654333 222 112
Q ss_pred EEEEECCCCeEEEeeCCCCC-CCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCC-chhhhhcccccC
Q psy1482 170 IVAYECDSKKLLMHQTPQDN-QKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQ-TQEHFIKGVLIN 247 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~-~~~dfi~~il~~ 247 (627)
+.+| ++|+|+.+.+++.. .++.. ....+++++|||+|++++++.+....... ...+.+. ++ .
T Consensus 144 -v~~~-~~~~v~~~~~~~~~~~~~~~------------~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 207 (239)
T cd02517 144 -VVLD-KDGYALYFSRSPIPYPRDSS------------EDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLE-QL-R 207 (239)
T ss_pred -EEEC-CCCCEEEecCCCCCCCCCCC------------CCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHH-HH-H
Confidence 4456 56899988775420 01100 11245889999999999999776521100 0111111 01 1
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhHHHHhH
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASR 280 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~ 280 (627)
....|.+|+++..+ + +|.+|+++++|..+.+
T Consensus 208 ~~~~g~~v~~~~~~-~-~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 208 ALENGYKIKVVETD-H-ESIGVDTPEDLERVEA 238 (239)
T ss_pred HHHCCCceEEEEeC-C-CCCCCCCHHHHHHHHh
Confidence 11247789999887 6 7999999999998764
No 61
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=99.80 E-value=1.2e-19 Score=148.45 Aligned_cols=79 Identities=46% Similarity=0.699 Sum_probs=73.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhhhcCC----chhHHhhhHHHHHHh
Q psy1482 541 LPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE----PSSLRKSVEPFVKWL 616 (627)
Q Consensus 541 ~~ll~~~~~~~~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~~~~~----~~~~~~~~~~fi~WL 616 (627)
+|+|++|+++.++|+++|.++|.+|.+++.+.+.|+++|+.|||+|||+||+|++||++.. .++++++++|||+||
T Consensus 1 ~~ll~~~~~~~~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~~~~~~~~~~~~~~fv~WL 80 (83)
T smart00515 1 GPLLKFLAKDEEEQIDLLYAIEEFCVELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVSAEGKKKVRKNAKPFVTWL 80 (83)
T ss_pred ChHHHHHHCChHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCChHHHHHHHHHHhHHHHHH
Confidence 3789999999999999999999999987778899999999999999999999999998765 578999999999999
Q ss_pred ccc
Q psy1482 617 LEA 619 (627)
Q Consensus 617 ~ea 619 (627)
+||
T Consensus 81 ~eA 83 (83)
T smart00515 81 QEA 83 (83)
T ss_pred HcC
Confidence 987
No 62
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.74 E-value=6.2e-17 Score=161.24 Aligned_cols=220 Identities=14% Similarity=0.094 Sum_probs=145.6
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhC-CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLS-GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
+-|||||+|.++||. +|+|+|++|+|||+|+++.|..+ ++++|+|++++ ++++++++. ++ .++.+..+
T Consensus 3 ~~aiIlA~g~s~R~~----~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~--~~---~~v~~~~~ 71 (238)
T PRK13368 3 VVVVIPARYGSSRLP----GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA--FG---GKVVMTSD 71 (238)
T ss_pred EEEEEecCCCCCCCC----CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH--cC---CeEEecCc
Confidence 569999999999994 49999999999999999999998 89999998863 678888875 22 44433333
Q ss_pred CCCcchhhhhhcccccCCcc-CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCC------CCCCCCc
Q psy1482 97 DGCYSFGDVMRDLDGKAVIR-NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQ------SKSSWKE 167 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~-~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~------~~~~~~~ 167 (627)
....+++.... +...++ +.|+++.||. +...++..+++.|+.. +.+.+++++.+... +..++
T Consensus 72 ~~~~g~~~~~~---a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~-- 142 (238)
T PRK13368 72 DHLSGTDRLAE---VMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDD----PSINVATLCAPISTEEEFESPNVVK-- 142 (238)
T ss_pred cCCCccHHHHH---HHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC----CCccceeEEEEcCCHHHhcCcCCCE--
Confidence 34445554332 122233 5699999995 6678899999988653 23455555554322 22222
Q ss_pred ceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCC----chhhhhcc
Q psy1482 168 DLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQ----TQEHFIKG 243 (627)
Q Consensus 168 ~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~----~~~dfi~~ 243 (627)
+ .++ ++|+++.+.+++...++-.. ....+.++|+|+|+++++..+.+..... ...+++ .
T Consensus 143 --~-~~~-~~g~v~~~~~~~~~~~~~~~------------~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 205 (238)
T PRK13368 143 --V-VVD-KNGDALYFSRSPIPSRRDGE------------SARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-R 205 (238)
T ss_pred --E-EEC-CCCCEEEeeCCCCCCCCCCC------------CCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-H
Confidence 3 445 56899988864310000000 0134789999999999999876531110 011222 2
Q ss_pred cccChhcccCeeEEEEcCCCceeeecCChhhHHHHhH
Q psy1482 244 VLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASR 280 (627)
Q Consensus 244 il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~ 280 (627)
++ ..|.+++++..+ + +|.+|+++++|..+..
T Consensus 206 ~~----~~g~~v~~~~~~-~-~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 206 AL----EHGEKIRMVEVA-A-TSIGVDTPEDLERVRA 236 (238)
T ss_pred HH----HCCCceEEEEeC-C-CCCCCCCHHHHHHHHH
Confidence 22 257789999854 7 9999999999998765
No 63
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=7.2e-17 Score=145.38 Aligned_cols=218 Identities=15% Similarity=0.252 Sum_probs=136.5
Q ss_pred eEEEEEeCCCCCCCCcC--CCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl--~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
|.|||||||.|+||.|+ ..||+||.|.|+|||+++|+.|..+||.+|+||+|+..+++ +||++ ++ .|+.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkd-Ky-----~vtLvy 73 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKD-KY-----DVTLVY 73 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHH-hc-----CeEEEe
Confidence 68999999999999999 99999999999999999999999999999999999999998 58876 32 477787
Q ss_pred CCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEEC
Q psy1482 96 SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYEC 175 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~ 175 (627)
.+.............+++++ .+-.++.+|.+..-++ ...|..+ +--+.+.+.... .++ +..++
T Consensus 74 N~kY~~yNn~ySlyla~d~l-~ntYiidsDnyl~kNi---f~~~~~~------S~Yfav~~~~~t-----nEw-~l~~~- 136 (231)
T COG4750 74 NPKYREYNNIYSLYLARDFL-NNTYIIDSDNYLTKNI---FLTKESH------SKYFAVYRSGKT-----NEW-LLIYN- 136 (231)
T ss_pred CchHHhhhhHHHHHHHHHHh-cccEEeccchHhhhhh---hhcCccc------ceEEEEEecCCC-----cee-EEEEc-
Confidence 76655444433333455554 4456778887654443 1222211 222223333211 122 34455
Q ss_pred CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh----hhhcCCCCCc-hhhhhcccccChhc
Q psy1482 176 DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP----LFSDNFDFQT-QEHFIKGVLINEEI 250 (627)
Q Consensus 176 ~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~----~~~~~fd~~~-~~dfi~~il~~~~~ 250 (627)
.+|+|..+.=.. .+..+-.|+..|+...-+ ++....-... +.-|...+... .+
T Consensus 137 ~~~ki~~v~Igg---------------------~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~-ni 194 (231)
T COG4750 137 SDGKITRVDIGG---------------------LNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPME-NI 194 (231)
T ss_pred CCCcEEEEEecC---------------------cccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHH-HH
Confidence 577887653321 345666788888766544 3333211111 22222222211 13
Q ss_pred ccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 251 LDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 251 ~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
....+++-.+.++ ....+++++.|.+.-..+
T Consensus 195 ~~l~m~iek~~~n-~IyE~DsLdelrk~~~~~ 225 (231)
T COG4750 195 KELDMYIEKLNDN-DIYEFDSLDELRKFEQKF 225 (231)
T ss_pred HHHhHhHHhhcCC-ceEEeccHHHHHhhhhhh
Confidence 3344555556655 677788888887765543
No 64
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.69 E-value=1.8e-16 Score=155.10 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=108.5
Q ss_pred EEEcCCCceeeecCChhhHHHHhHHHhhcccCCC-CCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-
Q psy1482 257 CSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPF-VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS- 334 (627)
Q Consensus 257 ~~~~~~~~~~~~V~s~~~y~~a~~dil~~~~~~~-~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~- 334 (627)
++... | ||.|+ ++|+++++++|..+.... ... ......-+++.++.|++++.|.+++.||++|.|++++.|+
T Consensus 42 ~~~~~-g-yW~Di---~~yl~an~diL~~~~~~~~~~~-~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~ 115 (231)
T TIGR03532 42 SGVLF-G-EWEDI---EPFIEANKDKIKDYRIENDRRN-SAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINI 115 (231)
T ss_pred cEEEE-E-eHHHH---HHHHHHhHhhhcceEEeecccc-cccccccccccccEECCCCEEeCCeEECCCCEEecCcccCC
Confidence 56666 6 99999 899999999998764110 000 0011112467888999999999999999999999999996
Q ss_pred eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEee---------eeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 335 HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRL---------SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 335 ~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~---------~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+++||++|.|+++++| ++++||+++.||.++.|.+ ++||++|+||.++.|.++++||++++|+++++|
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV 193 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIV 193 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 7999999999999999 5899999999999999974 667777777777666666666666666666654
No 65
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=1.8e-15 Score=141.34 Aligned_cols=118 Identities=24% Similarity=0.418 Sum_probs=95.9
Q ss_pred CceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeee
Q psy1482 293 SYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSV 371 (627)
Q Consensus 293 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~i 371 (627)
.+..+.+.+++++++.|++++.|.++++||++|.|++++.|+ +++||++|.|++++.|.+|+|++++.|++++.+.+++
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~si 89 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSV 89 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCE
Confidence 345666778888888888888888888899999998888886 6888999999998888888888888888888888888
Q ss_pred ecCCcEECCCcEECC------------------------CCEECCCcEECCCcEECCCcccCC
Q psy1482 372 LSYNTGVGEHSKLLN------------------------GCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 372 i~~~~~Ig~~~~i~~------------------------~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
|++++.|++++.+.+ +++|++++.||.++.+.++++|+.
T Consensus 90 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~ 152 (163)
T cd05636 90 LGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGP 152 (163)
T ss_pred ECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECC
Confidence 888888888887742 467777777777777777666653
No 66
>KOG2767|consensus
Probab=99.66 E-value=7.9e-16 Score=150.03 Aligned_cols=97 Identities=33% Similarity=0.625 Sum_probs=85.9
Q ss_pred HHHHHHHhhHHHHHHHhhcC-cHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHhhcCCCChhhHhhhhhcCC-------
Q psy1482 531 THMMSKINYFLPLFKNYIKN-ESAQQDCLDAFEEFAEENE-SLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE------- 601 (627)
Q Consensus 531 ~~~~~~~~~~~~ll~~~~~~-~~~q~~~l~ale~~~~~~~-~~~~~~~~il~~lYd~dil~Ee~il~W~~~~~------- 601 (627)
+.+.+.+.++.++|.+|+.+ .+.|..+|..||.+|..+. .+++..+.||+.|||+||++|+.|++|+++++
T Consensus 291 e~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~~w~~K~skk~vsk~ 370 (400)
T KOG2767|consen 291 EKIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVIIKWGEKPSKKYVSKE 370 (400)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccccchh
Confidence 45668889999999999987 5889999999999999865 46889999999999999999999999998876
Q ss_pred -chhHHhhhHHHHHHhccccCCCCCCC
Q psy1482 602 -PSSLRKSVEPFVKWLLEADEESEEDD 627 (627)
Q Consensus 602 -~~~~~~~~~~fi~WL~eaeee~~ee~ 627 (627)
.+++++.++|||+||++||+|++|||
T Consensus 371 ~sk~i~e~a~Pfi~WL~~AESe~eeEe 397 (400)
T KOG2767|consen 371 KSKKIRENAKPFIEWLKNAESEDEEEE 397 (400)
T ss_pred hhhhhHhhhhHHHHHHHhccccccccc
Confidence 56899999999999999987766653
No 67
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.66 E-value=1.2e-15 Score=163.83 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=134.4
Q ss_pred ceEEEEEeCCCCCCCCcC---CCCccccccCC-eehHHHHHHHHHhCCCcEEEEEecC-ChHHHHHHHHhcccccCCeeE
Q psy1482 17 VLQAVIVTDTFNRNFFPV---PEPYCLLPLVN-KCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLI 91 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl---~~PK~Llpi~g-~pli~~~l~~L~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v 91 (627)
.|.+||||||.|+||+|+ .+||+|+|++| +|||+++++.+...++.+.+|+|+. +.+.+++.+..... ...
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~----~~~ 80 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK----LTE 80 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC----ccc
Confidence 389999999999999999 47999999965 6999999999998898888888885 67888877765211 123
Q ss_pred EEEeCCCCcchhhhhhcc--cccC-Cc--cCCEEEEeCCeeccc--cHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCC
Q psy1482 92 TLIVSDGCYSFGDVMRDL--DGKA-VI--RNDFILVSGDVVSNI--NLLSALKSFKKINSMDSGAVALVLYKKKGQSKSS 164 (627)
Q Consensus 92 ~~i~~~~~~~~gdalr~l--~~~~-~i--~~dfll~~gD~i~~~--~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~ 164 (627)
.++.++..++|+.|+... ..+. .. +.-++++++|++..- .+...++.-....+ . +.++|+..++..|...|
T Consensus 81 ~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~-~-~~lvt~GI~Pt~PeTgy 158 (478)
T PRK15460 81 NIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE-A-GKLVTFGIVPDLPETGY 158 (478)
T ss_pred cEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh-c-CCEEEEecCCCCCCCCC
Confidence 677788888888875521 1111 11 234788999998543 35555555444332 2 68999999999998888
Q ss_pred CCcceEEEEECC--------CCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 165 WKEDLIVAYECD--------SKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 165 ~~~~~vv~~d~~--------~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
| ++...+. -.+|..|.|||+. .....++.. ...++|+|||+|+.+++
T Consensus 159 G----YI~~g~~~~~~~~~~~~~V~~F~EKPd~----~tA~~yl~~------G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 159 G----YIRRGEVSAGEQDTVAFEVAQFVEKPNL----ETAQAYVAS------GEYYWNSGMFLFRAGRY 213 (478)
T ss_pred C----eEEeCCccccccccCceEeeEEEeCCCH----HHHHHHHHc------CCEEEecceeheeHHHH
Confidence 8 7665422 1368899999971 111222221 44689999999997754
No 68
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=3.5e-15 Score=146.72 Aligned_cols=189 Identities=15% Similarity=0.172 Sum_probs=134.1
Q ss_pred ceEEEEEeCCCCCCCCcC---CCCccccccC-CeehHHHHHHHHHh-CCCcEEEEEecC-ChHHHHHHHHhcccccCCee
Q psy1482 17 VLQAVIVTDTFNRNFFPV---PEPYCLLPLV-NKCLLEYTLEHLHL-SGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTL 90 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl---~~PK~Llpi~-g~pli~~~l~~L~~-~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~ 90 (627)
.|.+||||||.|+||||| .+||++|++. ++.|++.|++.+.. .+.++++|+|+. |...+++.+.+.... ..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~~ 77 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---NA 77 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---cc
Confidence 478999999999999999 8999999996 58999999999987 779999999995 778787777662211 11
Q ss_pred EEEEeCCCCcchhhhhhcccccCCcc--CC--EEEEeCCeeccc--cHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCC
Q psy1482 91 ITLIVSDGCYSFGDVMRDLDGKAVIR--ND--FILVSGDVVSNI--NLLSALKSFKKINSMDSGAVALVLYKKKGQSKSS 164 (627)
Q Consensus 91 v~~i~~~~~~~~gdalr~l~~~~~i~--~d--fll~~gD~i~~~--~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~ 164 (627)
-.++.++..+.|+.|+.. .+....+ +| ++|++.|++... -+...++.-.+.. .++.++|+...+..|...|
T Consensus 78 ~~illEP~gRnTApAIA~-aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A--~~g~lVTfGI~Pt~PeTGY 154 (333)
T COG0836 78 AGIILEPEGRNTAPAIAL-AALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAA--EEGGIVTFGIPPTRPETGY 154 (333)
T ss_pred cceEeccCCCCcHHHHHH-HHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHH--HcCCEEEEecCCCCCccCc
Confidence 126678888888988763 2222221 23 888999998644 3555555433332 3468999999999888888
Q ss_pred CCcceEEEEEC-----CCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchh
Q psy1482 165 WKEDLIVAYEC-----DSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225 (627)
Q Consensus 165 ~~~~~vv~~d~-----~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl 225 (627)
| ++..-. .--+|-+|.|||+ .....+.+.+ ...++|+|+++|+..++
T Consensus 155 G----YIe~G~~~~~~~~~~V~~FvEKPd----~etA~~yv~s------G~y~WNSGmF~Fra~~~ 206 (333)
T COG0836 155 G----YIETGESIAENGVYKVDRFVEKPD----LETAKKYVES------GEYLWNSGMFLFRASVF 206 (333)
T ss_pred c----eeecCcccccCCceEeeeeeeCCC----HHHHHHHHHc------CceEeeccceEEEHHHH
Confidence 7 554421 1346889999996 1122222221 44789999999987644
No 69
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=7.7e-15 Score=137.01 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=90.7
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeec
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLS 373 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~ 373 (627)
+.++.+++++++++.|++++.|+++++||++|.|++++.|.+++||++|.|+.++++.+++|++++.|++++.+.++.+.
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~ 108 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFD 108 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcC
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999998542211
Q ss_pred -------------------CCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 374 -------------------YNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 374 -------------------~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
.++.||++++|+.++.|.+++.||+++.+++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 109 DKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 24555555555555555555555555555555544
No 70
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.62 E-value=3.9e-15 Score=141.33 Aligned_cols=108 Identities=14% Similarity=0.283 Sum_probs=98.5
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceee----eeEECCCCEECCCcEE-----eceEECCCCEeCCCcEEeeeee
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS----HCIIGRNCTIGSNVRL-----EKSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~----~s~Ig~~~~Ig~~~~I-----~~s~i~~~v~Ig~~~~i~~~ii 372 (627)
.+++++.|++++.|.+++.||++|.|+++|+|. .++||++|.||++|+| .+|+|+++++|++++.|.+|+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI 89 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV 89 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence 568889999999999999999999999999996 4799999999999999 4699999999999999999999
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++|.||.++.|.++++||+++.|++++.+.++..+.
T Consensus 90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip 126 (192)
T TIGR02287 90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMP 126 (192)
T ss_pred CCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEEC
Confidence 9999999999999899999999999998888777665
No 71
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.61 E-value=1.1e-14 Score=134.61 Aligned_cols=107 Identities=19% Similarity=0.332 Sum_probs=94.8
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeee----eEECCCCEECCCcEE-----eceEECCCCEeCCCcEEeeeeec
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRL-----EKSYLFDNVKIEDNCEVRLSVLS 373 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I-----~~s~i~~~v~Ig~~~~i~~~ii~ 373 (627)
+++++.|++++.|.+++.||++|.|+++|+|.+ ++||++|.|+++|+| .+++|++++.|+.++.+.+++||
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig 82 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIG 82 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEEC
Confidence 466778888888888999999999999999864 899999999999999 56999999999999999999999
Q ss_pred CCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 374 YNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++.||.++.|..+++|++++.|++++.+.+++.++
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~ 118 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIP 118 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeC
Confidence 999999999998889999999999888877766554
No 72
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.59 E-value=1.7e-14 Score=137.47 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=95.9
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceeee----eEECCCCEECCCcEEe-----ceEECCCCEeCCCcEEeeeee
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRLE-----KSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I~-----~s~i~~~v~Ig~~~~i~~~ii 372 (627)
.+++++.|++++.|.+++.||++|.|+++|+|++ ++||++|.||++|.|+ +++|++++.||.++.+.+|+|
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI 91 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI 91 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence 5678888999999888999999999999999964 6899999999999994 479999999999999999999
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
|++|.||.++.|.+|++||+++.|+++++|..+..+
T Consensus 92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~i 127 (196)
T PRK13627 92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG 127 (196)
T ss_pred CCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCc
Confidence 999999999999999999999999999888876654
No 73
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=131.85 Aligned_cols=108 Identities=21% Similarity=0.300 Sum_probs=99.7
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceee----eeEECCCCEECCCcEEe-----ceEECCCCEeCCCcEEeeeee
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS----HCIIGRNCTIGSNVRLE-----KSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~----~s~Ig~~~~Ig~~~~I~-----~s~i~~~v~Ig~~~~i~~~ii 372 (627)
.++++++|.++++|-+++.||+++.|+.+++|+ +..||+++.|.+||+|+ .+.||++++||+++.|.+|.|
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~I 92 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTI 92 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEE
Confidence 356778888999999999999999999999996 58999999999999994 579999999999999999999
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++|.||-|++|-+||.||+++.||+++.|.++.+++
T Consensus 93 g~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p 129 (176)
T COG0663 93 GDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIP 129 (176)
T ss_pred CCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCC
Confidence 9999999999999999999999999999999887765
No 74
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=2.1e-14 Score=133.71 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=91.4
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceee----eeEECCCCEECCCcEEec-----------eEECCCCEeCCCcEE
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS----HCIIGRNCTIGSNVRLEK-----------SYLFDNVKIEDNCEV 367 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~----~s~Ig~~~~Ig~~~~I~~-----------s~i~~~v~Ig~~~~i 367 (627)
|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|+|.+ +.|++++.|+.++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 57788888899998899999999999999884 479999999999999954 457888888888888
Q ss_pred eeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 368 ~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
.+++||++|+||.++.|.++++||+++.||+++.|.++..++
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~ 123 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILP 123 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEEC
Confidence 889999999999999988888888888888888887765554
No 75
>PLN02472 uncharacterized protein
Probab=99.58 E-value=2.7e-14 Score=140.28 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=99.3
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceee----eeEECCCCEECCCcEEe-----------ceEECCCCEeCCCcE
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS----HCIIGRNCTIGSNVRLE-----------KSYLFDNVKIEDNCE 366 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~----~s~Ig~~~~Ig~~~~I~-----------~s~i~~~v~Ig~~~~ 366 (627)
.++.++.|.+++.+.+++.||++|.|+.+++|. ..+||++|.|+++|+|+ +++||++|+||++|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 367788999999999999999999999999986 38899999999999994 589999999999999
Q ss_pred EeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 367 VRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 367 i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
|.+|+|+++|.||.++.|.+|++|+.++.|++++.++++..+..
T Consensus 141 L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~ 184 (246)
T PLN02472 141 LRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPT 184 (246)
T ss_pred ECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCC
Confidence 99999999999999999999999999999999999988887753
No 76
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.57 E-value=2.7e-14 Score=143.11 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=74.1
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-------------eeEECCCCEECCCcEEe--------c
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------------HCIIGRNCTIGSNVRLE--------K 352 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-------------~s~Ig~~~~Ig~~~~I~--------~ 352 (627)
+..+.++++|++++.|+++|.|++++.||++|.|+++++|+ +++||++|.|+++|+|. .
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 102 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV 102 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence 34455566666666677777777777777777777777775 57788888888888774 3
Q ss_pred eEECCCCEeCCCcEE-eeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 353 SYLFDNVKIEDNCEV-RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 353 s~i~~~v~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
++||+++.|+.++.| .+|+||++|.|+.++.+..+++||+++.|+.++.|.+++.|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~I 159 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRI 159 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEE
Confidence 677777777777777 45666666666555555555555555555444444444333
No 77
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.56 E-value=5.9e-14 Score=134.95 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=67.8
Q ss_pred CCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-e
Q psy1482 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-L 369 (627)
Q Consensus 291 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~ 369 (627)
.|+..++.+.+++++++.|++++.|++++.||++|.|+++|.|+++.||++|.|++++.|.+++|++++.|+.++.|. +
T Consensus 6 ~~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~ 85 (193)
T cd03353 6 DPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPG 85 (193)
T ss_pred CCCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCc
Confidence 344566677788888888888888888888888888888888887788888888888877777777777777777664 4
Q ss_pred eeecCCcEECCCc
Q psy1482 370 SVLSYNTGVGEHS 382 (627)
Q Consensus 370 ~ii~~~~~Ig~~~ 382 (627)
++|++++.|+.++
T Consensus 86 ~~Ig~~~~Ig~~~ 98 (193)
T cd03353 86 TVLGEGVHIGNFV 98 (193)
T ss_pred cEECCCCEECCcE
Confidence 5555555444433
No 78
>PLN02296 carbonate dehydratase
Probab=99.56 E-value=3.5e-14 Score=141.33 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=96.0
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceeee----eEECCCCEECCCcEEe-----------ceEECCCCEeCCCcE
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRLE-----------KSYLFDNVKIEDNCE 366 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I~-----------~s~i~~~v~Ig~~~~ 366 (627)
.+++++.|.+++.+.+++.||++|.|+.+|+|.+ ++||++|.|+++|.|. +++||++|+||.+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 4777888888888888999999999999999963 5899999999999994 689999999999999
Q ss_pred EeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 367 VRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 367 i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
|.+|+|+++|.||.+++|.+|++|++++.|++++.|.+++.|.
T Consensus 134 I~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~ 176 (269)
T PLN02296 134 LHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIP 176 (269)
T ss_pred ecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeC
Confidence 9999999999999999999899999999999888888776654
No 79
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.56 E-value=1e-13 Score=142.83 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=61.2
Q ss_pred eeeecCChhhHHHHhHHHhhcc--cCCCCCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCC
Q psy1482 265 YGISVKDWPSYQIASRDIVQRW--VHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRN 341 (627)
Q Consensus 265 ~~~~V~s~~~y~~a~~dil~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~ 341 (627)
.+..+.+|+..+..-..++.+. ..+.+.....+.+++.+++++.|++++.|++++.||++|.|+++|+|+ +++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 3556677765443333344221 112232344555566666666666666666666666666666666664 5667777
Q ss_pred CEECCCcEEe-ceEECCCCEeCCCcEE
Q psy1482 342 CTIGSNVRLE-KSYLFDNVKIEDNCEV 367 (627)
Q Consensus 342 ~~Ig~~~~I~-~s~i~~~v~Ig~~~~i 367 (627)
|.|+++|+|. +++||+++.|+++|+|
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 7777777763 6677777777666666
No 80
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.56 E-value=4.8e-14 Score=141.30 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=81.2
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-------------eeEECCCCEECCCcEEe--------c
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------------HCIIGRNCTIGSNVRLE--------K 352 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-------------~s~Ig~~~~Ig~~~~I~--------~ 352 (627)
+.++.+++.+++++.|+++|.|.+++.||++|.|+++++|+ +++||++|.|+++|+|. .
T Consensus 22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 101 (254)
T TIGR01852 22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV 101 (254)
T ss_pred CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence 34555666677777777777777778888888888888885 57788888888888884 4
Q ss_pred eEECCCCEeCCCcEE-eeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 353 SYLFDNVKIEDNCEV-RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 353 s~i~~~v~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+.||+++.|+.++.| .+|.||+++.|+.++.+..+++||+++.||.++.+.+++.|+
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig 159 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIG 159 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEEC
Confidence 577777777777777 467777777777766666666666666666555555444443
No 81
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.54 E-value=9.9e-14 Score=139.05 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=86.4
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe-------------ceEECCCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE-------------KSYLFDNV 359 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~s~i~~~v 359 (627)
...+.+.+.+++++.|++++.|++++.||++|.|+++|.|. +++||++|.|+++++|. ++.|++++
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 34667788888899999999999999999999999999986 69999999999999995 68899999
Q ss_pred EeCCCcEEe--------eeeecCCcEECCCcEECCCCEECCCcEECCCcE
Q psy1482 360 KIEDNCEVR--------LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC 401 (627)
Q Consensus 360 ~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~ 401 (627)
.|+++|+|. .++||+++.|+.++.|..+|+||+++.|+.++.
T Consensus 85 ~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~ 134 (254)
T cd03351 85 TIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNAT 134 (254)
T ss_pred EECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCcc
Confidence 999999985 267777777777766655566666555555443
No 82
>PLN02917 CMP-KDO synthetase
Probab=99.54 E-value=3e-13 Score=137.75 Aligned_cols=230 Identities=12% Similarity=0.056 Sum_probs=143.7
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe-
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV- 95 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~- 95 (627)
.+.|||+|+|.++||. +|+|+|++|+|||+|+++.+..++..+.+|+ +...+.+.+++.. ++ +.++.
T Consensus 47 ~i~aIIpA~G~SsR~~----~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~--~~-----v~vi~~ 114 (293)
T PLN02917 47 RVVGIIPARFASSRFE----GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG--FG-----ADVIMT 114 (293)
T ss_pred cEEEEEecCCCCCCCC----CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH--cC-----CEEEeC
Confidence 4679999999999995 5999999999999999999998765444333 4567888888864 11 33333
Q ss_pred -CCCCcchhhhhhcccccCCcc---CCEEEEeCCee--ccccHHHHHHHHHHHhcCCCCceEEEEee--ccCCCCCCCCc
Q psy1482 96 -SDGCYSFGDVMRDLDGKAVIR---NDFILVSGDVV--SNINLLSALKSFKKINSMDSGAVALVLYK--KKGQSKSSWKE 167 (627)
Q Consensus 96 -~~~~~~~gdalr~l~~~~~i~---~dfll~~gD~i--~~~~l~~~l~~h~~~~~~~~~~~~T~~~~--~~~~~~~~~~~ 167 (627)
+....|++.+...+ ..+. +.++++.||.- ..-.+..+++.++.. ....++..+. ....+..|+
T Consensus 115 ~~~~~~GT~~~~~a~---~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~----~~~iv~t~~~~~~~~~~~~yg-- 185 (293)
T PLN02917 115 SESCRNGTERCNEAL---KKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPEDASDPN-- 185 (293)
T ss_pred CcccCCchHHHHHHH---HhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc----CCceEEEEeeecCHHHhcCCC--
Confidence 34445777764322 2222 35888999983 445788888877532 1233322222 222333443
Q ss_pred ceEEEEECCCCeEEEeeCCCC-CCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCc--hhhhhccc
Q psy1482 168 DLIVAYECDSKKLLMHQTPQD-NQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQT--QEHFIKGV 244 (627)
Q Consensus 168 ~~vv~~d~~~~~vl~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~--~~dfi~~i 244 (627)
..+++.| ++|++++|...+- ..+.. .+. +-.-.+.++|||+|+.+.|..|.. ..... ++.++..+
T Consensus 186 rv~vv~~-~~g~alyfsr~~Ipe~kd~---------~~~-~~~i~~~n~Giy~f~~~~L~~l~~-l~~~n~e~e~yLtdl 253 (293)
T PLN02917 186 RVKCVVD-NQGYAIYFSRGLIPYNKSG---------KVN-PQFPYLLHLGIQSYDAKFLKIYPE-LPPTPLQLEEDLEQL 253 (293)
T ss_pred ceEEEEC-CCCeEEEeecCcCCcCCCc---------ccc-cccceEEEEEEEEeCHHHHHHHHc-CCCCcccchhccHHH
Confidence 2333466 5788786664321 00000 000 012247799999999999987754 22211 44455544
Q ss_pred ccChhcccCeeEEEEcCCCceeeecCChhhHHHHhHHHh
Q psy1482 245 LINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV 283 (627)
Q Consensus 245 l~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil 283 (627)
.. ...|.+|.++..+ . ....|+|+.++..+.+-+.
T Consensus 254 ~~--le~G~~i~~~~~~-~-~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 254 KV--LENGYKMKVIKVD-H-EAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred HH--HhCCCceEEEEeC-C-CCCCCCCHHHHHHHHHHHH
Confidence 42 2468889888876 3 5679999999999877543
No 83
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.53 E-value=7.2e-15 Score=145.35 Aligned_cols=154 Identities=19% Similarity=0.322 Sum_probs=101.5
Q ss_pred hhhhhcccccChhcccCeeEEEEcCCCceeee-------cCChhhHHHHhHHHh---------hcccCCCCCC-------
Q psy1482 237 QEHFIKGVLINEEILDCRLYCSVVDDIEYGIS-------VKDWPSYQIASRDIV---------QRWVHPFVPS------- 293 (627)
Q Consensus 237 ~~dfi~~il~~~~~~g~~I~~~~~~~~~~~~~-------V~s~~~y~~a~~dil---------~~~~~~~~~~------- 293 (627)
..+|+.++| .++++++++.+.++ . |..+ +.+|+.|..+.+|++ .+|.+|++|.
T Consensus 37 ~~~~~~~~L--~~~l~~~l~~~~~~-~-~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~pll~~~gf~a~~ 112 (273)
T PRK11132 37 KHENLGSAL--SYMLANKLASPIMP-A-IAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQ 112 (273)
T ss_pred CCccHHHHH--HHHHHHHhccccCC-H-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEEEEECCChHHHH
Confidence 567888888 34789999999998 5 7887 899999999999999 8999998875
Q ss_pred -ceeec---------CeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCC
Q psy1482 294 -YKYRR---------NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIED 363 (627)
Q Consensus 294 -~~~~~---------~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~ 363 (627)
|...+ ...++...+.+..++.|++.+.||+++.|+.++ +++||++|.||++|.| +.+|+||.
T Consensus 113 ~yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~---givIG~~a~IGdnv~I-----~~~VtiGg 184 (273)
T PRK11132 113 AYRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHAT---GIVIGETAVIENDVSI-----LQSVTLGG 184 (273)
T ss_pred HHHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCC---CeEECCCCEECCCCEE-----cCCcEEec
Confidence 11111 223444444445555555555555555555443 4578888888888765 33444443
Q ss_pred C---cEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 364 N---CEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 364 ~---~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+ +...+++||++|.||.|++|..++.||++++||++++|
T Consensus 185 ~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV 226 (273)
T PRK11132 185 TGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV 226 (273)
T ss_pred CcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 2 22234566777777776666666666666666666643
No 84
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.53 E-value=1.2e-13 Score=127.13 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=92.9
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeee----eEECCCCEECCCcEEec-----eEECCCCEeCCCcEEeeeeec
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRLEK-----SYLFDNVKIEDNCEVRLSVLS 373 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I~~-----s~i~~~v~Ig~~~~i~~~ii~ 373 (627)
+++++.|++++.|.+++.||++|.|+++|.|.+ ++||++|.|+++|.|.. ++|++++.|+.+|.+.+++||
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 82 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVG 82 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEEC
Confidence 567788888888888899999999999999875 59999999999999964 899999999999999999999
Q ss_pred CCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 374 YNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++.|+.++.+..+++|++++.+++++.+.++..+.
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~ 118 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIP 118 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeC
Confidence 999999999988888888888888888777665543
No 85
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.53 E-value=1.3e-13 Score=137.12 Aligned_cols=54 Identities=31% Similarity=0.511 Sum_probs=24.9
Q ss_pred ecCeEEECCCeEECCCCEEcCCcEECCCCEECCCcee------e-eeEECCCCEECCCcEE
Q psy1482 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL------S-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 297 ~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I------~-~s~Ig~~~~Ig~~~~I 350 (627)
+.++++|++++.|+++++|+++++||++|.||++|.| . ++.||++|.|+++++|
T Consensus 120 ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 120 IGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred cCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3344444444444444444444444444444444433 2 3555555555555554
No 86
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.53 E-value=1.5e-13 Score=126.89 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=94.5
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeee----eEECCCCEECCCcEEec-----eEECCCCEeCCCcEEeeeeec
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRLEK-----SYLFDNVKIEDNCEVRLSVLS 373 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I~~-----s~i~~~v~Ig~~~~i~~~ii~ 373 (627)
+++++.|+++++|.+++.||++|.|+++++|.+ ++||++|.|+++|+|.. ++|++++.|+.+|.+.+++|+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 567888888999988999999999999998863 69999999999999966 699999999999999999999
Q ss_pred CCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 374 YNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++.|+.++.+..+++|++++.|+.++.+.+++.+.
T Consensus 82 ~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~ 117 (153)
T cd04645 82 DNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIP 117 (153)
T ss_pred CCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeC
Confidence 999999999998888888888888888777665554
No 87
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.51 E-value=1.1e-13 Score=138.95 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=54.1
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-------------eeEECCCCEECCCcEEec--------eE
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------------HCIIGRNCTIGSNVRLEK--------SY 354 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-------------~s~Ig~~~~Ig~~~~I~~--------s~ 354 (627)
++.++++||+++.|+++++|.+++.||++|.|+++|.|+ .++||++|.|+++|+|.. +.
T Consensus 28 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~ 107 (262)
T PRK05289 28 VIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTR 107 (262)
T ss_pred EECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeE
Confidence 344444555555555555555556666666666666664 256666666666666643 34
Q ss_pred ECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcEEC
Q psy1482 355 LFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397 (627)
Q Consensus 355 i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig 397 (627)
||+++.|+.+++|. +|+||+++.+++++.+..+++||+++.||
T Consensus 108 IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig 151 (262)
T PRK05289 108 IGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIG 151 (262)
T ss_pred ECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEe
Confidence 56665555555553 55555555444444333333333333333
No 88
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.51 E-value=1.7e-13 Score=136.32 Aligned_cols=142 Identities=22% Similarity=0.299 Sum_probs=75.5
Q ss_pred eecCChhhHHHHhHHHhhcccCC--CCCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCE
Q psy1482 267 ISVKDWPSYQIASRDIVQRWVHP--FVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCT 343 (627)
Q Consensus 267 ~~V~s~~~y~~a~~dil~~~~~~--~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~ 343 (627)
+-..+|...+...-+++.+...+ .+.....+.+.+.+++++.|+++++|+.++.||++|.|+++|+|+ ++.||++|.
T Consensus 76 Lv~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~ 155 (338)
T COG1044 76 LVVKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTV 155 (338)
T ss_pred EEeCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcE
Confidence 33444655555555555432211 111123334444455555555555555555555555555555554 455556666
Q ss_pred ECCCcEE-eceEECCCCEeCCCcEEe--------------------eeeecCCcEECCCcEECCC----CEECCCcE---
Q psy1482 344 IGSNVRL-EKSYLFDNVKIEDNCEVR--------------------LSVLSYNTGVGEHSKLLNG----CLLGTGVL--- 395 (627)
Q Consensus 344 Ig~~~~I-~~s~i~~~v~Ig~~~~i~--------------------~~ii~~~~~Ig~~~~i~~~----~ii~~~~~--- 395 (627)
|.+|+.| .++.||++|.|++|++|+ +.+|+++|.||.+++|..+ ++|+.++.
T Consensus 156 i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN 235 (338)
T COG1044 156 IHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 235 (338)
T ss_pred EcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcc
Confidence 6666655 346666666666666654 3677788888887777665 55555543
Q ss_pred ---ECCCcEECCCccc
Q psy1482 396 ---IGNKTCLSGVKLP 408 (627)
Q Consensus 396 ---ig~~~~v~~~~~v 408 (627)
|+.++.|+.++.|
T Consensus 236 ~vqIaHnv~IG~~~~I 251 (338)
T COG1044 236 LVQIGHNVRIGEHCII 251 (338)
T ss_pred eeEEccccEECCCcEE
Confidence 3334444444444
No 89
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.51 E-value=1.8e-13 Score=137.38 Aligned_cols=109 Identities=24% Similarity=0.366 Sum_probs=87.7
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe-------------ceEECCCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE-------------KSYLFDNV 359 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~s~i~~~v 359 (627)
..++.+.+.+++++.|+++|.|++++.||++|.|+++++|. +++||++|.|++++.|. .+.||+++
T Consensus 8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~ 87 (262)
T PRK05289 8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNN 87 (262)
T ss_pred CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCC
Confidence 45677788888888888888888889999999999999886 79999999999999995 48999999
Q ss_pred EeCCCcEEee--------eeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 360 KIEDNCEVRL--------SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 360 ~Ig~~~~i~~--------~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
.|+++|+|.. +.||+++.|+.++.|+.+|+||+++.++.++.+
T Consensus 88 ~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i 138 (262)
T PRK05289 88 TIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATL 138 (262)
T ss_pred EECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcccc
Confidence 9999999963 467777777777777666666666555554433
No 90
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.51 E-value=3.2e-13 Score=135.34 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=86.1
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe-------------ceEECCCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE-------------KSYLFDNV 359 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~s~i~~~v 359 (627)
..++.+.+++++++.|++++.|++++.||++|.|+++|.|. +++||++|.|+++++|. +++||+++
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 34566778888888888888888888888999999988885 78999999999999995 58899999
Q ss_pred EeCCCcEEe--------eeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 360 KIEDNCEVR--------LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 360 ~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
.|+++|+|. .++||+++.|+.++.|+.+|+||+++.|+.++.+..+++|
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~I 140 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEV 140 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEE
Confidence 999999885 3567777777666666555555555555554444443333
No 91
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.49 E-value=6.2e-13 Score=139.15 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=37.4
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE-eceEECCCCEeCCCcEE
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i 367 (627)
...+.+.+.++.++.|++++.|++++.||++|.|+++|+|+ ++.||++|.|+++|+| .++.|++++.|+.+|+|
T Consensus 106 ~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 106 SAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred CcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 33444444455555555555555555555555555555553 4555555555555555 23345555555555555
No 92
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.49 E-value=3.5e-13 Score=133.99 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=24.2
Q ss_pred ecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 297 ~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
+++++.+++++.|+++|.|++++.||++|.|+++++|. ++.||++|.|++++.|
T Consensus 8 I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 62 (255)
T PRK12461 8 IDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVV 62 (255)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEe
Confidence 33344444444444444444444444444444444443 3444444444444444
No 93
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.49 E-value=3.6e-13 Score=129.57 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=92.4
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeee-----------
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLS----------- 370 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~----------- 370 (627)
.+++++.|+++|.|. ++.||++|.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|.++
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 457788889999995 68999999999999999999999999999999999999999999999998532
Q ss_pred ---------------------eecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 371 ---------------------VLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 371 ---------------------ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
....+++||++++|+.+++|+++++||++++|+++++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~ 143 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTK 143 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 0235788888888888888888888888888888888765
No 94
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.48 E-value=3.7e-13 Score=138.81 Aligned_cols=107 Identities=23% Similarity=0.403 Sum_probs=72.2
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe---------------------
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE--------------------- 351 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~--------------------- 351 (627)
+.++.++++|+.++.|++++.|+++++||++|.|+++++|+ +++||++|.|+++|+|+
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 34555666777777777777777777888888888888886 78888888888888883
Q ss_pred ceEECCCCEeCCCcEEe-----eeeecCCcEECCCcEECCCCEECCCcEECCCc
Q psy1482 352 KSYLFDNVKIEDNCEVR-----LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKT 400 (627)
Q Consensus 352 ~s~i~~~v~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~ 400 (627)
.++|+++|.||.++.|. +++||+++.|+..+.|+.+|.||+++.|+.++
T Consensus 195 ~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~ 248 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQV 248 (324)
T ss_pred eEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcc
Confidence 37788888888888773 34555555555555554444444444444433
No 95
>KOG1461|consensus
Probab=99.47 E-value=9e-14 Score=146.62 Aligned_cols=96 Identities=28% Similarity=0.422 Sum_probs=86.2
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEE-eeeeecC
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV-RLSVLSY 374 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i-~~~ii~~ 374 (627)
....++.||.++.||.++.|. |++||.||.||.+++|.+|+||+||+||+||+|++|+||++|.|++||.+ .+|+||.
T Consensus 329 ~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~ 407 (673)
T KOG1461|consen 329 IVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGF 407 (673)
T ss_pred cccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEee
Confidence 445667777788888888885 89999999999999999999999999999999999999999999999999 5899999
Q ss_pred CcEECCCcEECCCCEECC
Q psy1482 375 NTGVGEHSKLLNGCLLGT 392 (627)
Q Consensus 375 ~~~Ig~~~~i~~~~ii~~ 392 (627)
+|++|++-.+..+++|..
T Consensus 408 ~VVv~~~~~l~~ns~~~~ 425 (673)
T KOG1461|consen 408 GVVVGRNFVLPKNSKVRQ 425 (673)
T ss_pred eeEeCCCccccccccccC
Confidence 999999999998877743
No 96
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=5.1e-13 Score=132.86 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=46.5
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-------------eeEECCCCEECCCcEEe
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------------HCIIGRNCTIGSNVRLE 351 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-------------~s~Ig~~~~Ig~~~~I~ 351 (627)
+..+.+++.|++++.|+++++|.+++.||++|.|++++.|+ ++.||++|+|+++|+|.
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 45566677777777777788888888888888888888886 46799999999999884
No 97
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=1.3e-12 Score=121.46 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=59.1
Q ss_pred eEECCCCEEcC--CcEECCCCEECCCceeee----eEECCCCEECCCcEEe-------------ceEECCCCEeCCCcEE
Q psy1482 307 VLIGKTSVLKQ--QVVIGEGSSIGENTQLSH----CIIGRNCTIGSNVRLE-------------KSYLFDNVKIEDNCEV 367 (627)
Q Consensus 307 ~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~~----s~Ig~~~~Ig~~~~I~-------------~s~i~~~v~Ig~~~~i 367 (627)
..|++.+.|.+ ++.||++|.|+++|.|.+ ++||++|.|+++|.|. .+.|++++.|+++|.+
T Consensus 8 ~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i 87 (161)
T cd03359 8 NKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV 87 (161)
T ss_pred CeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEE
Confidence 34444444422 344555555555554432 4555555555555553 2467777777777777
Q ss_pred eeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 368 ~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
.++.|+++++||++++|+.+++|++++.|++++.+.++++++
T Consensus 88 ~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~ 129 (161)
T cd03359 88 NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIP 129 (161)
T ss_pred EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeC
Confidence 777777777777666666666666666666666555555443
No 98
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.45 E-value=5.5e-13 Score=108.89 Aligned_cols=78 Identities=35% Similarity=0.748 Sum_probs=54.9
Q ss_pred ECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCC
Q psy1482 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399 (627)
Q Consensus 321 ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~ 399 (627)
||+++.|++++.|.+++||++|.|+++|+|.+++|++++.|+.+|.|.+++|++++.|++++++. +|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-~~ii~~~~~i~~~ 79 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-DCLVGSGYRVEAG 79 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-cCEECCCcEeCCC
Confidence 56666666666666677777777777777777777777777777777777777777777777775 6777766666665
No 99
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.44 E-value=1.1e-12 Score=124.43 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=85.6
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|.|||||||+|+||.+ .||+|+|++|+|||+|+++.|..+++++|+|+++++.+.++.|+.... ..+.. .
T Consensus 1 m~aIILAgG~gsRmg~--~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~-------~~~~~-~ 70 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG--VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY-------KDYKN-A 70 (183)
T ss_pred CeEEEECCccCccCCC--CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-------cEEEe-c
Confidence 7899999999999975 799999999999999999999999999999999988889999987521 12222 2
Q ss_pred CCcchhhhhhcccccCCccCCEEEEeCCee--ccccHHHHHHHHHHH
Q psy1482 98 GCYSFGDVMRDLDGKAVIRNDFILVSGDVV--SNINLLSALKSFKKI 142 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i~~dfll~~gD~i--~~~~l~~~l~~h~~~ 142 (627)
...|....+..........++|++++||+. ....+..+++.|...
T Consensus 71 ~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 71 SGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred CCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 333433333321111012468999999984 456788888877654
No 100
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.44 E-value=9.8e-13 Score=137.66 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=66.9
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe--------------------ceE
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE--------------------KSY 354 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~--------------------~s~ 354 (627)
.+.+++.||.++.|++++.|++++.||++|.|+++++|. ++.||++|.|+++|+|+ +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 344445555555666666666666667777777777775 46688888888888883 578
Q ss_pred ECCCCEeCCCcEEe-----eeeecCCcEECCCcEECCCCEECCCcEECCC
Q psy1482 355 LFDNVKIEDNCEVR-----LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399 (627)
Q Consensus 355 i~~~v~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~ 399 (627)
|++++.||.++.|. +++||+++.|+.++.|+.+|.||+++.|+.+
T Consensus 206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~ 255 (343)
T PRK00892 206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQ 255 (343)
T ss_pred ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeee
Confidence 88888888888884 4556665555555555444444444444333
No 101
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.44 E-value=7.5e-13 Score=107.54 Aligned_cols=79 Identities=43% Similarity=0.858 Sum_probs=69.6
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECC
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~ 398 (627)
+||++|.|++++.|.+++||++|.|+++|.|.+++|++++.|+++++|.+++|++++.|++++.|+++++|++++.||+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 3678888888888888899999999999999999999999999999999999999999999988888888888887764
No 102
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.43 E-value=1.4e-12 Score=127.69 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred CeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 299 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
+++.+++++.|+++++|.+. .+..++.||++|.|. +++||++|+||+||+|
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I 156 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL 156 (269)
T ss_pred CCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEE
Confidence 33444444444444444321 233334444444443 2444444444444444
No 103
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.42 E-value=1.9e-12 Score=128.21 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=31.6
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
...+.+++++++++.|++++.|. ++.++.++.|+++|.|. ++.||++|.||+||+|
T Consensus 103 ~~rI~p~a~V~~ga~Ig~gavI~-p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I 159 (272)
T PRK11830 103 GVRVVPGAVVRRGAYIAPNVVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL 159 (272)
T ss_pred CcEEcCCeEECCCCEECCCcEEE-EEEECCCCEECCCcEEccccEECCCCEECCCcEE
Confidence 34556677777777777777776 34455555555555553 3444444444444444
No 104
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.42 E-value=1.5e-12 Score=127.50 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=24.9
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
.++++++||+++.|.++ .+..++.||++|.|+.+++|+ ++.||+||+|+.++.|
T Consensus 108 ~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~I 162 (269)
T TIGR00965 108 AVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGI 162 (269)
T ss_pred EECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCccc
Confidence 34444444444444443 333344444444444444443 3444444444444444
No 105
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.42 E-value=1e-12 Score=106.79 Aligned_cols=77 Identities=36% Similarity=0.648 Sum_probs=58.4
Q ss_pred ECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEEC
Q psy1482 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397 (627)
Q Consensus 321 ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig 397 (627)
||++|.|++++.|.+++||++|.|++++.|.+++|++++.|+++|.|.+++|++++.|++++++.+++++++++.|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 56667777777777777777777777777777777778888878877777777777777777777667777777665
No 106
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.42 E-value=3e-12 Score=118.33 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=69.4
Q ss_pred eeecCeEEECCCeEECCCCEEcC---CcEECCCCEECCCcee-----eeeEECCCCEECCCcEEeceEECCCCEeCCCcE
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQ---QVVIGEGSSIGENTQL-----SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE 366 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~Ig~~~~I-----~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~ 366 (627)
..+.+++++++++.|+++|+|.+ ++.||++|.|+++|+| .+++||++|.|+.++.+.+++|++++.||.++.
T Consensus 13 a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~ 92 (155)
T cd04745 13 AVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAV 92 (155)
T ss_pred CEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCE
Confidence 34556788888899988888875 5899999999999999 469999999999999999998888888888777
Q ss_pred Ee-eeeecCCcEECCCcEE
Q psy1482 367 VR-LSVLSYNTGVGEHSKL 384 (627)
Q Consensus 367 i~-~~ii~~~~~Ig~~~~i 384 (627)
|. ++.|+++++|+.++.|
T Consensus 93 I~~g~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 93 VMDGAVIGEESIVGAMAFV 111 (155)
T ss_pred EeCCCEECCCCEECCCCEe
Confidence 63 2444444444433333
No 107
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.42 E-value=2.5e-12 Score=116.57 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=16.3
Q ss_pred cCeEEECCCeEECCCCEEcCCcEECCCCEECCCcee
Q psy1482 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL 333 (627)
Q Consensus 298 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I 333 (627)
++.+++++++.|++++.|.+.+.++.++.||+++.|
T Consensus 5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I 40 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMV 40 (139)
T ss_pred CCCcEECCCCEECCCCEECCCCEEccCCEECCCeEE
Confidence 344444444444444444444444444444444433
No 108
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.42 E-value=2.7e-12 Score=119.54 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=75.1
Q ss_pred ceeecCeEEECCCeEECCCCEEc---CCcEECCCCEECCCceeeee-----------EECCCCEECCCcEEeceEECCCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLK---QQVVIGEGSSIGENTQLSHC-----------IIGRNCTIGSNVRLEKSYLFDNV 359 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~Ig~~~~I~~s-----------~Ig~~~~Ig~~~~I~~s~i~~~v 359 (627)
...+.+++++|+++.|++++.|. +++.||++|.|+++|+|.++ .||++|.|+.+++|.+++|++++
T Consensus 11 ~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~ 90 (164)
T cd04646 11 ESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNN 90 (164)
T ss_pred CCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCC
Confidence 34556788999999999999985 56899999999999999753 57777777777777766666666
Q ss_pred EeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCc
Q psy1482 360 KIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVK 406 (627)
Q Consensus 360 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~ 406 (627)
.||.+|. |+++++||+++.|+.+|+|.+++.+++++.+.++.
T Consensus 91 ~Ig~~a~-----I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~ 132 (164)
T cd04646 91 VFESKSF-----VGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 (164)
T ss_pred EEeCCCE-----ECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence 6666555 44455555555555555555555555555554443
No 109
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.41 E-value=1.3e-12 Score=142.73 Aligned_cols=79 Identities=28% Similarity=0.401 Sum_probs=55.2
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEe-ceEECCCCEeCCCcEEeeeee
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-KSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i~~~ii 372 (627)
...+.++++||+++.|+++|.|. ++.||++|.|+++|.|.+++||++|.||++++|. +++|+++|.||+++.+.+++|
T Consensus 273 ~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~i 351 (451)
T TIGR01173 273 NVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARI 351 (451)
T ss_pred CeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEE
Confidence 34455566777777777777775 5778888888888888778888888888777774 577777777776665544333
Q ss_pred c
Q psy1482 373 S 373 (627)
Q Consensus 373 ~ 373 (627)
|
T Consensus 352 g 352 (451)
T TIGR01173 352 G 352 (451)
T ss_pred C
Confidence 3
No 110
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.40 E-value=4.1e-12 Score=118.93 Aligned_cols=100 Identities=22% Similarity=0.360 Sum_probs=63.4
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceee-----eeEECCCCEECCCcEEe-----ceEECCCCEeCCCcEEee-e
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-----HCIIGRNCTIGSNVRLE-----KSYLFDNVKIEDNCEVRL-S 370 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-----~s~Ig~~~~Ig~~~~I~-----~s~i~~~v~Ig~~~~i~~-~ 370 (627)
.+++++.|++++.|.+++.||++|.|++++.|. +++||++|.|++++.|. .+.|++++.|+.++.|.+ +
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~ 83 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA 83 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence 355666666666666666666666666666664 25677777777777662 456666666666666653 6
Q ss_pred eecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 371 VLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 371 ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+||++|+||.++.|. ++.||+++.||.++.|
T Consensus 84 ~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i 114 (167)
T cd00710 84 YIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVV 114 (167)
T ss_pred EECCCCEECCCCEEE-CCEECCCCEEcCCCEE
Confidence 666666666666665 4555555555555544
No 111
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.40 E-value=5.6e-12 Score=117.99 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=90.9
Q ss_pred eeecCeEEECCCeEECCCCEEcC----CcEECCCCEECCCceee-----eeEECCCCEECCCcEEe-ceEECCCCEeCCC
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQ----QVVIGEGSSIGENTQLS-----HCIIGRNCTIGSNVRLE-KSYLFDNVKIEDN 364 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~Ig~~~~I~-----~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~ 364 (627)
....+++.+|+++.|++++.|+. ++.||++|.|++++.|. .+.||++|.|+.++.|. .+.|++++.||.+
T Consensus 15 a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~ 94 (167)
T cd00710 15 AVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFR 94 (167)
T ss_pred CEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCC
Confidence 34456677888888888888865 47899999999999994 58899999999999995 5999999999999
Q ss_pred cEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcc
Q psy1482 365 CEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKL 407 (627)
Q Consensus 365 ~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~ 407 (627)
|.|.++.||++|.||.++.|. ++.|+++..+++++.+..+..
T Consensus 95 ~~I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~ 136 (167)
T cd00710 95 SVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQ 136 (167)
T ss_pred CEEECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCc
Confidence 999988888888888888885 667777777766665555443
No 112
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.40 E-value=3.4e-12 Score=115.68 Aligned_cols=55 Identities=13% Similarity=0.286 Sum_probs=28.5
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
++.+++++++++.|.+.+.+..++.||++|.|+.++.|+ +++||++|.|+.++.|
T Consensus 9 ~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 64 (139)
T cd03350 9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVI 64 (139)
T ss_pred EECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEE
Confidence 344455555555555555555555555555555555553 3455555555555544
No 113
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.40 E-value=1.9e-12 Score=105.72 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=74.5
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCc
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS 382 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~ 382 (627)
+++++.|++++.|. ++.||++|.|++++.|.+++|+++|.|+.+|.|.+|+|++++.|+.++++.+|+||+++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 67888999999996 79999999999999999999999999999999999999999999999999999999999998874
No 114
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.40 E-value=8.6e-12 Score=123.73 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=132.3
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCC
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGC 99 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~ 99 (627)
+||+|+|.|+||. ||+|+|++|+|||.|+++.+..+++++|+|++. .+.+.+++.. ++ +++....+...
T Consensus 2 ~iIpA~g~s~R~~----~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~--~g---~~~v~~~~~~~ 70 (238)
T TIGR00466 2 VIIPARLASSRLP----GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQK--FG---IEVCMTSKHHN 70 (238)
T ss_pred EEEecCCCCCCCC----CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH--cC---CEEEEeCCCCC
Confidence 7999999999994 699999999999999999999889999999886 3557777654 22 22221112233
Q ss_pred cchhhhhhcccccCCccCC-EEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCC-CCCCCcceEEEEEC
Q psy1482 100 YSFGDVMRDLDGKAVIRND-FILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQS-KSSWKEDLIVAYEC 175 (627)
Q Consensus 100 ~~~gdalr~l~~~~~i~~d-fll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~-~~~~~~~~vv~~d~ 175 (627)
.|+..+...+.....-+.+ ++++.||. +..-.+..+++.++.. .+.++.+..+.... ..+.++...++.|
T Consensus 71 ~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-----~~~~a~~~~~~~d~~~~~~p~~vk~v~~- 144 (238)
T TIGR00466 71 SGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-----NVPMAALAVKIHDAEEAFNPNAVKVVLD- 144 (238)
T ss_pred ChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-----CCCEEEEeeecCCHHHccCCCceEEEeC-
Confidence 4433333321111111334 67789998 3345677777776432 24444444443321 1111333444456
Q ss_pred CCCeEEEeeCCCCCCCccccchhhhc--cCCcEEEEecCCcceeeecCCchhhhhhcCCCCC-chhhhhcccccChhccc
Q psy1482 176 DSKKLLMHQTPQDNQKKVNIPMENIL--LYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQ-TQEHFIKGVLINEEILD 252 (627)
Q Consensus 176 ~~~~vl~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~-~~~dfi~~il~~~~~~g 252 (627)
.+|+++.+.+.+-+ .+++.+. ..|.. ...+...|||.|+.++|..|.....-. ++.+-+. .| ....+|
T Consensus 145 ~~g~alyfsr~~ip-----~~R~~~~~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~le-ql-r~le~g 215 (238)
T TIGR00466 145 SQGYALYFSRSLIP-----FDRDFFAKRQTPVG--DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLE-QL-RVLYYG 215 (238)
T ss_pred CCCeEEEecCCCCC-----CCCCcccccccccc--cceeEEEEEEeCCHHHHHHHHhCCCCcccccchhH-HH-hhhhcC
Confidence 67888888764310 1111111 11111 113557999999999999887531100 0101000 00 111368
Q ss_pred CeeEEEEcCCCceeeecCChhhH
Q psy1482 253 CRLYCSVVDDIEYGISVKDWPSY 275 (627)
Q Consensus 253 ~~I~~~~~~~~~~~~~V~s~~~y 275 (627)
.+|++...+.. ....|++|+++
T Consensus 216 ~~i~~~~~~~~-~~~~vdt~~d~ 237 (238)
T TIGR00466 216 EKIHVKIAQEV-PSVGVDTQEDL 237 (238)
T ss_pred CceEEEEeCCC-CCCCCCChHHc
Confidence 99998887622 14589999875
No 115
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.40 E-value=6.3e-12 Score=115.82 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=76.7
Q ss_pred eeecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceeee-----eEECCCCEECCCcEEeceEECCCCEeCCCcE
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLSH-----CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE 366 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~~-----s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~ 366 (627)
..+.+++.+|+++.|++++.|.+. ++||++|.|+++|.|.. ++||+++.|+.+|.+.+++|++++.|+.++.
T Consensus 13 ~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~ 92 (154)
T cd04650 13 SYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAI 92 (154)
T ss_pred CEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCE
Confidence 345567788888888888888765 69999999999999974 8999999999999999999999999999988
Q ss_pred Ee-eeeecCCcEECCCcEECCCCEECCCc
Q psy1482 367 VR-LSVLSYNTGVGEHSKLLNGCLLGTGV 394 (627)
Q Consensus 367 i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~ 394 (627)
+. +++|+++++|+.++.+.++..+++++
T Consensus 93 i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~ 121 (154)
T cd04650 93 LLNGAKIGDHVIIGAGAVVTPGKEIPDYS 121 (154)
T ss_pred EeCCCEECCCCEECCCCEECCCcEeCCCC
Confidence 73 45555555555544444444444433
No 116
>PLN02472 uncharacterized protein
Probab=99.38 E-value=4.4e-12 Score=124.69 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=74.2
Q ss_pred ceeecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceee-----------eeEECCCCEECCCcEEeceEECCCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLS-----------HCIIGRNCTIGSNVRLEKSYLFDNV 359 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~-----------~s~Ig~~~~Ig~~~~I~~s~i~~~v 359 (627)
.....++++++.++.|.++++|.++ ++||.+|.|+++|+|. +++||++|+||++|.|.+|+|++++
T Consensus 71 ~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v 150 (246)
T PLN02472 71 NVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPEC 150 (246)
T ss_pred CCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCC
Confidence 3455667888888888888888765 7899999999999994 4889999999999998888888888
Q ss_pred EeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 360 KIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 360 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
.||.+|.| +++++||+ +|+|+.++.+.++..++++.++
T Consensus 151 ~IG~~svI-----~~gavIg~------~~~Ig~gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 151 IIGQHSIL-----MEGSLVET------HSILEAGSVLPPGRRIPTGELW 188 (246)
T ss_pred EECCCCEE-----CCCCEECC------CCEECCCCEECCCCEeCCCCEE
Confidence 87776653 33344443 4444444444444445554544
No 117
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.38 E-value=5.6e-12 Score=119.82 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=69.3
Q ss_pred ceeecCeEEECCCeEECCCCEEcC---CcEECCCCEECCCcee-----eeeEECCCCEECCCcEEeceEECCCCEeCCCc
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQ---QVVIGEGSSIGENTQL-----SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~Ig~~~~I-----~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~ 365 (627)
...+.++++||+++.|+++|+|.+ +++||++|.|+++|+| .+|+||++|+||+++.|.+|+|++++.||.++
T Consensus 20 ~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga 99 (192)
T TIGR02287 20 TAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNA 99 (192)
T ss_pred CCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCc
Confidence 344556788888888988888864 5889999999999999 36999999999999999999999999998877
Q ss_pred EEe-eeeecCCcEECCCc
Q psy1482 366 EVR-LSVLSYNTGVGEHS 382 (627)
Q Consensus 366 ~i~-~~ii~~~~~Ig~~~ 382 (627)
.|. +++||+++.|+.++
T Consensus 100 ~I~~g~~IG~~s~Vgags 117 (192)
T TIGR02287 100 VVMDGAVIGENSIVAASA 117 (192)
T ss_pred ccCCCeEECCCCEEcCCC
Confidence 763 34444444443333
No 118
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.38 E-value=3.4e-12 Score=112.52 Aligned_cols=101 Identities=21% Similarity=0.407 Sum_probs=85.3
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCC
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEH 381 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~ 381 (627)
+++++.|++++.|+++++||++|.|++++.|+ +++||++|.|++++.+.++.+ .+..+..++.+.+++||+++.||.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~ 79 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGAN 79 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcC
Confidence 46788888889999999999999999999995 799999999999999987544 4455566788889999999999999
Q ss_pred cEECCCCEECCCcEECCCcEECC
Q psy1482 382 SKLLNGCLLGTGVLIGNKTCLSG 404 (627)
Q Consensus 382 ~~i~~~~ii~~~~~ig~~~~v~~ 404 (627)
+.+.++++|++++.|+.++.+..
T Consensus 80 ~~v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 80 ATILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred CEEeCCcEECCCCEEccCCEEeC
Confidence 99988888888888888876654
No 119
>PLN02296 carbonate dehydratase
Probab=99.37 E-value=5.8e-12 Score=125.55 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=69.8
Q ss_pred eecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceee-----------eeEECCCCEECCCcEEeceEECCCCEe
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLS-----------HCIIGRNCTIGSNVRLEKSYLFDNVKI 361 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~-----------~s~Ig~~~~Ig~~~~I~~s~i~~~v~I 361 (627)
.+.++++||+++.|.++|+|.++ +.||++|.|+++|+|. +++||++|+||++|.|.+++|++++.|
T Consensus 66 ~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~I 145 (269)
T PLN02296 66 SVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFV 145 (269)
T ss_pred EEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEE
Confidence 34456778888888888888765 4899999999999995 579999999999998888888887777
Q ss_pred CCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCc
Q psy1482 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKT 400 (627)
Q Consensus 362 g~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~ 400 (627)
|.++.| .++++|++++.|+.|++|..++.|++++
T Consensus 146 G~ga~I-----~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 146 GMGATL-----LDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred CCCcEE-----CCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 766654 3334444443333334433343333333
No 120
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=1.1e-11 Score=115.39 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=73.6
Q ss_pred cCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceeee-------------eEECCCCEECCCcEEeceEECCCCEe
Q psy1482 298 RNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLSH-------------CIIGRNCTIGSNVRLEKSYLFDNVKI 361 (627)
Q Consensus 298 ~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~~-------------s~Ig~~~~Ig~~~~I~~s~i~~~v~I 361 (627)
.+++++++++.|+++|.|.++ +.||++|.|+++|+|.+ ++||++|.|++++.+.++.|++++.|
T Consensus 19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 347889999999999999875 69999999999999963 57999999999999988888888888
Q ss_pred CCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 362 g~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
|+++.| +++++|++++.|+++++|..++.|++++.+
T Consensus 99 g~~~~I-----g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv 134 (161)
T cd03359 99 GKNCVI-----GRRCIIKDCVKILDGTVVPPDTVIPPYSVV 134 (161)
T ss_pred CCCCEE-----cCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence 887664 444444444444444444444444444443
No 121
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.36 E-value=3.4e-12 Score=118.81 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=84.0
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC-C
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD-G 98 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~-~ 98 (627)
|||||||.|+||. .||+|+|++|+|||+|+++.+...|+++|+|++++ +++..++... .+.++..+ .
T Consensus 1 ~vILa~G~s~Rmg---~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-------~~~~v~~~~~ 68 (160)
T PF12804_consen 1 AVILAAGKSSRMG---GPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-------GIKVVVDPEP 68 (160)
T ss_dssp EEEEESSSCGGGT---SCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-------TSEEEE-STS
T ss_pred CEEECCcCcccCC---CCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-------CceEEEeccc
Confidence 7999999999996 59999999999999999999999999999999987 5666666442 24555443 3
Q ss_pred CcchhhhhhcccccCCc--cCCEEEEeCCee--ccccHHHHHHHHHHH
Q psy1482 99 CYSFGDVMRDLDGKAVI--RNDFILVSGDVV--SNINLLSALKSFKKI 142 (627)
Q Consensus 99 ~~~~gdalr~l~~~~~i--~~dfll~~gD~i--~~~~l~~~l~~h~~~ 142 (627)
..|...+++.. ...+ .++|++++||+. ..-.+..+++.+.+.
T Consensus 69 ~~G~~~sl~~a--~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 69 GQGPLASLLAA--LSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp SCSHHHHHHHH--HHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred cCChHHHHHHH--HHhcccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 47777777743 2233 578999999994 345678888877654
No 122
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.35 E-value=5e-12 Score=125.18 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=20.4
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
++|+++|.||.++.|..|++||++++|++++.|.+++.|.
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEEC
Confidence 4555555555555554455555555555555555544443
No 123
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.34 E-value=8.1e-12 Score=101.69 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=40.9
Q ss_pred CCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEee-eeecCCcE
Q psy1482 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRL-SVLSYNTG 377 (627)
Q Consensus 304 ~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~-~ii~~~~~ 377 (627)
++++.|++++.|+++++||++|.|++++.|++++|+++|+|+++++|.++++++++.|++++.+.+ ++|+++++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence 445555555555555555666666555555555566666665555555555555555555555533 33333333
No 124
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.34 E-value=6.8e-12 Score=101.91 Aligned_cols=78 Identities=28% Similarity=0.480 Sum_probs=70.5
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEee-eeecCCcEECC
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRL-SVLSYNTGVGE 380 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~-~ii~~~~~Ig~ 380 (627)
|+++++.|++++.+.+ +.||++|.|++++.|.+++|+++|.|+++|.|.+++|++++.|+.++.+.+ +++++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 4788899999999975 999999999999999999999999999999999999999999999999876 77777777763
No 125
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.34 E-value=1.7e-11 Score=119.10 Aligned_cols=53 Identities=30% Similarity=0.522 Sum_probs=28.9
Q ss_pred cCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE
Q psy1482 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 298 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I 350 (627)
.+++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.|++++.|
T Consensus 17 ~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 17 GEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444555555555555555555555555555554 3666666666666655
No 126
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.33 E-value=1.8e-11 Score=117.62 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=51.1
Q ss_pred eeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEe-ceEECCCCEeCCCcEEeeeee
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-KSYLFDNVKIEDNCEVRLSVL 372 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i~~~ii 372 (627)
.++.+++.+++++.|++++.|+. +.||++|.|++++.|.+++||++|.|++++.|. ++.|++++.|+.++.+.+++|
T Consensus 28 a~i~~~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 28 VILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CEEeCcCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 34455566666666666666653 377788888877777777777777777777773 566666666666555543333
No 127
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.32 E-value=9.6e-12 Score=101.24 Aligned_cols=78 Identities=32% Similarity=0.590 Sum_probs=68.4
Q ss_pred ECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECC
Q psy1482 321 IGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398 (627)
Q Consensus 321 ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~ 398 (627)
|++++.|++++.|+ +++||++|+||++|+|.++++++++.|++++.|.++++++++.|++++.+..+++|+++++|+.
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 45666666666664 6789999999999999999999999999999999999999999999999998788888888763
No 128
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.1e-11 Score=135.72 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=50.3
Q ss_pred ecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEe-ceEECCCCEeCCCcEEeeeeecC
Q psy1482 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-KSYLFDNVKIEDNCEVRLSVLSY 374 (627)
Q Consensus 297 ~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i~~~ii~~ 374 (627)
+.++++||+++.|+++|.|. +++||++|.|+++|.|.+++||++|.||++|+|. +++|++++.||.++.+.+++|++
T Consensus 284 i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~ 361 (456)
T PRK14356 284 IYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGK 361 (456)
T ss_pred EeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecC
Confidence 34556777777777777774 5677777777777777777777777777777763 56666666666665554443333
No 129
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.30 E-value=6.3e-11 Score=113.81 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=32.0
Q ss_pred EECCCCEECCCcEE-eceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 337 IIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 337 ~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
.||++|.|+.+|.| .++.|++++.|+.++.+. ++.||++|+||.++.|.++++|++++.|+++++|
T Consensus 116 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 116 RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred EECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 33444444444433 234445555555555542 3455555555555555555555555555555444
No 130
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.30 E-value=1.8e-11 Score=104.89 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=51.9
Q ss_pred EECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCC
Q psy1482 308 LIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNG 387 (627)
Q Consensus 308 ~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 387 (627)
.|++++.|. +++||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|++++.||.++.+.+|+|++++.|++++.+.+.
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 455556663 56666777776 6666677777777777777777777777777777777766666666666666666543
No 131
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.30 E-value=9.7e-12 Score=116.92 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=39.4
Q ss_pred ecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe-------------ceEECCCCEeC
Q psy1482 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE-------------KSYLFDNVKIE 362 (627)
Q Consensus 297 ~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~-------------~s~i~~~v~Ig 362 (627)
+.+.+.++++++|++.|+|++++.||+++.|+++++|. .+.||++++|-+.+.|+ ..+||++++|.
T Consensus 12 Ie~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IR 91 (260)
T COG1043 12 IEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIR 91 (260)
T ss_pred eCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEe
Confidence 34444455555555555555555555555555555553 46666666666666653 23556666665
Q ss_pred CCcEE
Q psy1482 363 DNCEV 367 (627)
Q Consensus 363 ~~~~i 367 (627)
+.++|
T Consensus 92 E~vTi 96 (260)
T COG1043 92 EFVTI 96 (260)
T ss_pred eEEEE
Confidence 55555
No 132
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.30 E-value=4.6e-11 Score=110.27 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=72.6
Q ss_pred eeecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceeee-----eEECCCCEECCCcEEeceEECCCCEeCCCcE
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLSH-----CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE 366 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~~-----s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~ 366 (627)
..+.+++++++++.|++++.|.++ ++||++|.|+++|+|.. ++||++|.|+.+|+|.+++|++++.|+.++.
T Consensus 12 a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~ 91 (153)
T cd04645 12 ATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAI 91 (153)
T ss_pred CEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCE
Confidence 445567889999999999988754 69999999999999975 6999999999999999999999999998887
Q ss_pred Ee-eeeecCCcEECCCcEEC
Q psy1482 367 VR-LSVLSYNTGVGEHSKLL 385 (627)
Q Consensus 367 i~-~~ii~~~~~Ig~~~~i~ 385 (627)
+. +++|++++.|+.++.|.
T Consensus 92 v~~~~~ig~~~~ig~~~~v~ 111 (153)
T cd04645 92 ILDGAVIGKGSIVAAGSLVP 111 (153)
T ss_pred EcCCCEECCCCEECCCCEEC
Confidence 74 45555544444444443
No 133
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=3.6e-11 Score=102.11 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=74.1
Q ss_pred cCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCc
Q psy1482 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT 376 (627)
Q Consensus 298 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~ 376 (627)
.+.+++++++.|++++.+.++++||++|.|++++.|. +++||++|+||. .|.+|+|++++.|+++++|.+++||+++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v 86 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWC 86 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCC
Confidence 3568899999999999999899999999999999887 589999999975 6788999999999999998888888888
Q ss_pred EECCCcEEC
Q psy1482 377 GVGEHSKLL 385 (627)
Q Consensus 377 ~Ig~~~~i~ 385 (627)
.||+++.+.
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 888887765
No 134
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.29 E-value=2.3e-11 Score=104.25 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=74.6
Q ss_pred CEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECC
Q psy1482 325 SSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404 (627)
Q Consensus 325 ~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~ 404 (627)
+.|++++.|.+++||++|.|+ ++.|.+|+||+++.|+++|+|.+|+|++++.||+++.|. +|+|++++.|++++.+.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-RAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-eEEECCCCEECCCCEECC
Confidence 678888889999999999999 999999999999999999999999999999999999996 899999999999988877
Q ss_pred Cc
Q psy1482 405 VK 406 (627)
Q Consensus 405 ~~ 406 (627)
..
T Consensus 80 ~~ 81 (104)
T cd04651 80 DP 81 (104)
T ss_pred Cc
Confidence 54
No 135
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.29 E-value=3.8e-11 Score=109.28 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=75.2
Q ss_pred eeecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceee-----eeEECCCCEECCCcEEeceEECCCCEeCCCcE
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLS-----HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE 366 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~-----~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~ 366 (627)
..+-+.+.|+.++.|.++++|+++ ..||++|.|.+||+|. .+.||++|+||+++.|++|.|++++.||=|+.
T Consensus 24 A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~ 103 (176)
T COG0663 24 ATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGAT 103 (176)
T ss_pred CEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCce
Confidence 345567778889999999999754 6899999999999995 68999999999999999999988888776665
Q ss_pred EeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 367 VRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 367 i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
|- +|+.|+.+|+||.|+.|.++..+++++++
T Consensus 104 vl-----------dga~IG~~~iVgAgalV~~~k~~p~~~L~ 134 (176)
T COG0663 104 VL-----------DGAVIGDGSIVGAGALVTPGKEIPGGSLV 134 (176)
T ss_pred Ee-----------CCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence 43 33333334444444444444455555544
No 136
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.28 E-value=4.6e-11 Score=113.98 Aligned_cols=96 Identities=17% Similarity=0.271 Sum_probs=65.6
Q ss_pred eecCeEEECCCeEECCCCEEcCC---cEECCCCEECCCceee-----eeEECCCCEECCCcEEeceEECCCCEeCCCcEE
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQ---VVIGEGSSIGENTQLS-----HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~Ig~~~~I~-----~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i 367 (627)
.+.+++.||+++.|+++|+|.++ ++||.+|.|+++|+|+ +++||++|.||+++.|.+++|++++.||.++.|
T Consensus 24 ~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V 103 (196)
T PRK13627 24 VLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVI 103 (196)
T ss_pred EEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCcc
Confidence 33455667777777777777543 5788899999999885 588999999999999988888888888776654
Q ss_pred eeeeecCCcEECCCcEECCCCEECCCcEE
Q psy1482 368 RLSVLSYNTGVGEHSKLLNGCLLGTGVLI 396 (627)
Q Consensus 368 ~~~ii~~~~~Ig~~~~i~~~~ii~~~~~i 396 (627)
.++++||+++.|+.|++|-.+..+
T Consensus 104 -----~~g~~IG~~s~Vgags~V~~~~~i 127 (196)
T PRK13627 104 -----MDGAVIGEESIVAAMSFVKAGFQG 127 (196)
T ss_pred -----CCCcEECCCCEEcCCCEEeCCcCc
Confidence 334444444444333333333333
No 137
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=2.7e-11 Score=132.15 Aligned_cols=87 Identities=16% Similarity=0.325 Sum_probs=63.3
Q ss_pred eecCeEEECCCeEECCCCEEcC-----CcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEee
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQ-----QVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRL 369 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~ 369 (627)
.+.++++|++++.|+.+|.|++ +++||++|+||+++.|. +++||++|.||++|.|.+++|++++.++.++.+.+
T Consensus 276 ~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~ 355 (446)
T PRK14353 276 VIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGD 355 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcC
Confidence 4444555555555555555544 57888888898888886 79999999999999998888888887777776666
Q ss_pred eeecCCcEECCCc
Q psy1482 370 SVLSYNTGVGEHS 382 (627)
Q Consensus 370 ~ii~~~~~Ig~~~ 382 (627)
++||++|.||.++
T Consensus 356 ~~ig~~~~Ig~~~ 368 (446)
T PRK14353 356 ATIGAGANIGAGT 368 (446)
T ss_pred cEEcCCcEECCce
Confidence 6666666665543
No 138
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=2.6e-11 Score=132.90 Aligned_cols=73 Identities=27% Similarity=0.347 Sum_probs=50.5
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEE-eceEECCCCEeCCCcEE
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i 367 (627)
...+.+++.|++++.|+++|.|+ +++||++|.|+++++|.+++||++|.||+++.| .++.|++++.|+.++.|
T Consensus 282 ~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 282 GVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 34555556666777777776663 567778888877777777777777777777777 46677777777775554
No 139
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.27 E-value=6.1e-11 Score=114.66 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=43.0
Q ss_pred ECCCCEECCCceee-eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcEEC
Q psy1482 321 IGEGSSIGENTQLS-HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397 (627)
Q Consensus 321 ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig 397 (627)
||++|.|+++++|+ +++||++|.|+.++.| .++.|++++.|+.++.|. ++.|+++++||.++.+.+++.|+++++|+
T Consensus 102 ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~ 181 (201)
T TIGR03570 102 IGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVG 181 (201)
T ss_pred ECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEEC
Confidence 33333333333332 2445555555555555 345555556666666554 45566666666666555555555555555
Q ss_pred CCcEE
Q psy1482 398 NKTCL 402 (627)
Q Consensus 398 ~~~~v 402 (627)
+++++
T Consensus 182 ~~~~v 186 (201)
T TIGR03570 182 AGAVV 186 (201)
T ss_pred CCCEE
Confidence 55544
No 140
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.27 E-value=1.7e-10 Score=111.60 Aligned_cols=133 Identities=15% Similarity=0.240 Sum_probs=72.2
Q ss_pred eeeecCChhhHHHHhHHHhhcccCCCCCCceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCE
Q psy1482 265 YGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCT 343 (627)
Q Consensus 265 ~~~~V~s~~~y~~a~~dil~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~ 343 (627)
++..++.++...++...+..... +....+.+..++++++.|++++.|+++++|++++.||++|.|. ++.|+.+|.
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~----~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ 137 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGY----RFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCV 137 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCC----cceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCE
Confidence 55555555555444444433221 1123344455556666666666666666666666666666653 555555555
Q ss_pred ECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 344 IGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 344 Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
||++|.| .++.++.++.||++| .|+.+++|.+++.|+++|+|+.++++..+ +++++++
T Consensus 138 ig~~~~i~~~~~i~~~~~ig~~~-----~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~ 196 (201)
T TIGR03570 138 IGDYVHIAPGVTLSGGVVIGEGV-----FIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVV 196 (201)
T ss_pred ECCCCEECCCCEEeCCcEECCCC-----EECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEE
Confidence 5555544 233444444444443 35566666666666666666666666554 5665544
No 141
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.26 E-value=6.3e-11 Score=113.83 Aligned_cols=98 Identities=20% Similarity=0.401 Sum_probs=50.0
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeec
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLS 373 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~ 373 (627)
..++...++.++.+++++.|+++++|++++.||++|.|. +++|+++|.||++|.| .++.+..++.||++|.| |
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----g 160 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI-----G 160 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEE-----C
Confidence 344445555555555555555555555555555555553 4555555555555555 34444444555554443 3
Q ss_pred CCcEECCCcEECCCCEECCCcEECC
Q psy1482 374 YNTGVGEHSKLLNGCLLGTGVLIGN 398 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~~ii~~~~~ig~ 398 (627)
.++.|.+++.|+++|+|+.+++|.+
T Consensus 161 ~~~~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 161 AGATIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CCCEEcCCCEECCCCEECCCCEEcC
Confidence 3344444444444444444444444
No 142
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=3.8e-11 Score=130.40 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=52.0
Q ss_pred CcEECCCCEECCCceeeeeEECCCC----------EECCCcEEeceEECCCCEeCCCcEEee--------eeecCCcEEC
Q psy1482 318 QVVIGEGSSIGENTQLSHCIIGRNC----------TIGSNVRLEKSYLFDNVKIEDNCEVRL--------SVLSYNTGVG 379 (627)
Q Consensus 318 ~~~ig~~~~Ig~~~~I~~s~Ig~~~----------~Ig~~~~I~~s~i~~~v~Ig~~~~i~~--------~ii~~~~~Ig 379 (627)
+++||++|.|+++++|.+|+||++| +||+++.|.+|+|++++.||.++.+.+ ++||++|.||
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig 377 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG 377 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence 4455555555555555555555555 777777788888889999988887742 4555555555
Q ss_pred CCcEECCCCEECCCcEECCCcE
Q psy1482 380 EHSKLLNGCLLGTGVLIGNKTC 401 (627)
Q Consensus 380 ~~~~i~~~~ii~~~~~ig~~~~ 401 (627)
.++.|.+++.||+++.||+++.
T Consensus 378 ~~~~i~~~~~ig~~~~i~~g~~ 399 (430)
T PRK14359 378 SDTQLVAPVNIEDNVLIAAGST 399 (430)
T ss_pred CCCEEeCCcEECCCCEECCCCE
Confidence 5555554455555544444443
No 143
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.25 E-value=1.1e-10 Score=113.53 Aligned_cols=84 Identities=18% Similarity=0.336 Sum_probs=46.8
Q ss_pred ecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee--------------------eeEECCCCEECCCcEEe-----
Q psy1482 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS--------------------HCIIGRNCTIGSNVRLE----- 351 (627)
Q Consensus 297 ~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~--------------------~s~Ig~~~~Ig~~~~I~----- 351 (627)
+.+++.|++++.|++++.|+.++.||++|.|+++++|+ .+.||+++.|+.++.+.
T Consensus 34 i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~ 113 (205)
T cd03352 34 IGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALG 113 (205)
T ss_pred ECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCEEECCCCEEeccccC
Confidence 33444555555555555555556666666666666652 35677777777777663
Q ss_pred ceEECCCCEeCCCcEEe-eeeecCCcEECC
Q psy1482 352 KSYLFDNVKIEDNCEVR-LSVLSYNTGVGE 380 (627)
Q Consensus 352 ~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~ 380 (627)
++.|++++.|+.++.|. ++.|++++.|+.
T Consensus 114 ~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~ 143 (205)
T cd03352 114 DTVIGDGTKIDNLVQIAHNVRIGENCLIAA 143 (205)
T ss_pred CeEECCCCEECCceEEeCCCEECCCCEECC
Confidence 34555555555555552 344444444433
No 144
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.24 E-value=4e-11 Score=108.22 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=82.5
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|.+||+|+|+|+||. ..-|||++++|+|||+|+++.|.+ .+.+|++.++.|...++.|+.. ++ +.++..+
T Consensus 1 m~~iiMAGGrGtRmg--~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~--~g-----v~vi~tp 70 (177)
T COG2266 1 MMAIIMAGGRGTRMG--RPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES--VG-----VKVIETP 70 (177)
T ss_pred CceEEecCCcccccC--CCcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh--cC-----ceEEEcC
Confidence 679999999999998 246999999999999999999988 8999999999999999999976 22 6666544
Q ss_pred CCcchhhhhhcccccCCccCCEEEEeCCeec-c-ccHHHHHHHH
Q psy1482 98 GCYSFGDVMRDLDGKAVIRNDFILVSGDVVS-N-INLLSALKSF 139 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i~~dfll~~gD~i~-~-~~l~~~l~~h 139 (627)
. .|.-.-++ .+-+.+..+||++++|+.+ + ..+..+++.+
T Consensus 71 G-~GYv~Dl~--~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~ 111 (177)
T COG2266 71 G-EGYVEDLR--FALESLGTPILVVSADLPFLNPSIIDSVIDAA 111 (177)
T ss_pred C-CChHHHHH--HHHHhcCCceEEEecccccCCHHHHHHHHHHH
Confidence 3 23333334 2233456699999999964 3 2345555443
No 145
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.24 E-value=1.2e-10 Score=103.15 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=24.8
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
+.||++|+||.++.| +..||++++||++++|..++.|..
T Consensus 74 V~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 74 ISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred EEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEEE
Confidence 455666666666666 466666666777666666666654
No 146
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.22 E-value=6.2e-11 Score=96.19 Aligned_cols=77 Identities=25% Similarity=0.444 Sum_probs=62.6
Q ss_pred EECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEEC
Q psy1482 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVG 379 (627)
Q Consensus 302 ~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig 379 (627)
++++++.|++++.|. ++.||++|.|++++.|.+++|++++.|+++++|.+++|++++.|+.++.|. ++++++++.||
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 367888888888886 689999999999999999999999999999999999999999888877764 34444444443
No 147
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.22 E-value=1.8e-10 Score=113.38 Aligned_cols=206 Identities=13% Similarity=0.106 Sum_probs=124.8
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
+-|||||+|.|+||. +|+|+|++|+|||+|+++.+..++ +++|+|++. .+.+.+++.+ ++ ..+.++..
T Consensus 2 ~~~iIlA~G~s~R~~----~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~--~~---~~~~~~~~ 70 (223)
T cd02513 2 ILAIIPARGGSKGIP----GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK--YG---AEVPFLRP 70 (223)
T ss_pred eEEEEecCCCCCCCC----CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH--hC---CCceeeCC
Confidence 569999999999994 599999999999999999999887 788877653 4556666543 11 22223321
Q ss_pred ----CCCcchhhhhhcccccCCcc------CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCC
Q psy1482 97 ----DGCYSFGDVMRDLDGKAVIR------NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSS 164 (627)
Q Consensus 97 ----~~~~~~gdalr~l~~~~~i~------~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~ 164 (627)
....++.++++.. ...+. +.++++.||. +....+..+++.|+.. ++..++.+.+......+
T Consensus 71 ~~~~~~~~~~~~~i~~~--l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~-----~~~~~~~~~~~~~~~~~ 143 (223)
T cd02513 71 AELATDTASSIDVILHA--LDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE-----GADSVFSVTEFHRFPWR 143 (223)
T ss_pred hHHCCCCCCcHHHHHHH--HHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEEEecCcCcHH
Confidence 2233555655532 11121 4589999999 5667899999988764 33444444444332222
Q ss_pred CCcceEEEEECCCC-eEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcc
Q psy1482 165 WKEDLIVAYECDSK-KLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKG 243 (627)
Q Consensus 165 ~~~~~vv~~d~~~~-~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~ 243 (627)
+ .. .+ ++| .++.+.+... ...-+.| .....++|+|+++++.+.....
T Consensus 144 ~----~~-~~-~~~~~~~~~~~~~~-~~~q~~~------------~~~~~n~~~y~~~~~~~~~~~~------------- 191 (223)
T cd02513 144 A----LG-LD-DNGLEPVNYPEDKR-TRRQDLP------------PAYHENGAIYIAKREALLESNS------------- 191 (223)
T ss_pred h----ee-ec-cCCceeccCccccc-CCcCCCh------------hHeeECCEEEEEEHHHHHhcCC-------------
Confidence 2 22 11 122 2222211110 0000111 3345678999998876422100
Q ss_pred cccChhcccCeeEEEEcCCCceeeecCChhhHHHHhH
Q psy1482 244 VLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASR 280 (627)
Q Consensus 244 il~~~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~ 280 (627)
..|.+++.+.+++. ...+|+++.++..+..
T Consensus 192 ------~~g~~~~~~~~~~~-~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 ------FFGGKTGPYEMPRE-RSIDIDTEEDFELAEA 221 (223)
T ss_pred ------ccCCCeEEEEeCcc-ceeCCCCHHHHHHHHH
Confidence 13778888888864 7899999999876643
No 148
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=3.4e-11 Score=122.60 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=49.3
Q ss_pred eecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecC
Q psy1482 296 YRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSY 374 (627)
Q Consensus 296 ~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~ 374 (627)
...+++.||.+++|+++|+|. ++.||+++.|..+++|.+|.||++|.||+.+++ .++.|+++++||.-|.+.++.||.
T Consensus 282 ~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~ 360 (460)
T COG1207 282 ILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGK 360 (460)
T ss_pred EEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccC
Confidence 445666677777777776664 566666666666666666666666666666666 556666666666555555544444
Q ss_pred C
Q psy1482 375 N 375 (627)
Q Consensus 375 ~ 375 (627)
+
T Consensus 361 g 361 (460)
T COG1207 361 G 361 (460)
T ss_pred C
Confidence 4
No 149
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=6.3e-11 Score=129.50 Aligned_cols=92 Identities=25% Similarity=0.365 Sum_probs=47.0
Q ss_pred cEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCc-------------------EE
Q psy1482 319 VVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT-------------------GV 378 (627)
Q Consensus 319 ~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~-------------------~I 378 (627)
++||++|.|+++|.|+ +++||++|.||+++.|.+++|++++.|++++.+.+++||++| +|
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~I 393 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVI 393 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEe
Confidence 3445555555555554 456666666666665555555555555444444444444433 34
Q ss_pred CCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 379 GEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 379 g~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
|++++|+.+++|..+++||+++.|+++++|..
T Consensus 394 g~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~ 425 (450)
T PRK14360 394 GDRSKTGANSVLVAPITLGEDVTVAAGSTITK 425 (450)
T ss_pred CCCeEeCCCCEEeCCcEECCCCEECCCCEECc
Confidence 44444444444444455555555555555543
No 150
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=9.5e-11 Score=128.23 Aligned_cols=86 Identities=28% Similarity=0.395 Sum_probs=51.8
Q ss_pred EEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECC
Q psy1482 314 VLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGT 392 (627)
Q Consensus 314 ~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~ 392 (627)
.|++++.||++|.|+++|.|+ +++||++|.|+++|+|.+|+||++++|+.+|.|.+++|++++.||+++++.++++|++
T Consensus 264 ~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~ 343 (459)
T PRK14355 264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSA 343 (459)
T ss_pred EECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCC
Confidence 344455555555555555554 4566666666666666666666666666666666666666666666666655555555
Q ss_pred CcEECCC
Q psy1482 393 GVLIGNK 399 (627)
Q Consensus 393 ~~~ig~~ 399 (627)
+++||.+
T Consensus 344 ~~~ig~~ 350 (459)
T PRK14355 344 HVKIGNF 350 (459)
T ss_pred CCEECCC
Confidence 5555544
No 151
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.20 E-value=1.2e-10 Score=112.06 Aligned_cols=110 Identities=17% Similarity=0.311 Sum_probs=77.3
Q ss_pred eEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEece-EECCCCE----------------eC
Q psy1482 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKS-YLFDNVK----------------IE 362 (627)
Q Consensus 300 ~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s-~i~~~v~----------------Ig 362 (627)
+..+|+++.|+++|.|. +++||++|.|+.++.|.+++||++|.|++++.|... ....++. .+
T Consensus 19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 35678888888888886 789999999999999999999999999999998432 1111110 00
Q ss_pred ----CCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcE----ECCCcccCC
Q psy1482 363 ----DNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC----LSGVKLPSA 410 (627)
Q Consensus 363 ----~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~----v~~~~~v~~ 410 (627)
..-...+++||++|+||.++.|.+|++||++++|+++++ +++++++..
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G 153 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAG 153 (204)
T ss_pred ccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEe
Confidence 001125677777777777777777777777777777776 455555543
No 152
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.19 E-value=2.1e-10 Score=112.52 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=122.1
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhC-CCcEEEEEecCC-hHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLS-GIEEIIVFCTSH-VNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|||||+|.|+||.. ..||+|+|++|+|||+|+++.+..+ ++++|+|++++. .+.+..++... ..+.++...
T Consensus 2 aiIlAaG~s~R~~~-~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~------~~~~~~~~~ 74 (217)
T TIGR00453 2 AVIPAAGRGTRFGS-GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR------AVPKIVAGG 74 (217)
T ss_pred EEEEcCcccccCCC-CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC------CcEEEeCCC
Confidence 79999999999974 4699999999999999999999988 899999999864 45666555431 123444332
Q ss_pred CCcchhhhhhcccccCCc-c-CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE
Q psy1482 98 GCYSFGDVMRDLDGKAVI-R-NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY 173 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i-~-~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~ 173 (627)
. +..++++. +...+ + +.++++.||. +..-.+..+++.++.. +. +++..+.. . ++..+
T Consensus 75 ~--~~~~sl~~--~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-----~~--~~~~~~~~----~----~v~~~ 135 (217)
T TIGR00453 75 D--TRQDSVRN--GLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKA-----GA--AILALPVA----D----TLKRV 135 (217)
T ss_pred c--hHHHHHHH--HHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhC-----Cc--EEEeEecc----c----eEEEE
Confidence 2 22333431 12122 3 3478889998 4455678888876542 22 12222221 1 14445
Q ss_pred ECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcC-C--CCCchhhhhcccccChhc
Q psy1482 174 ECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDN-F--DFQTQEHFIKGVLINEEI 250 (627)
Q Consensus 174 d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~-f--d~~~~~dfi~~il~~~~~ 250 (627)
| ++|.+..+.+.. ......+ .++|+...+..+... . .+. -.|-. .++ ..
T Consensus 136 ~-~~g~~~~~~~r~---------------------~~~~~~~-p~~f~~~~l~~~~~~~~~~~~~-~~d~~-~~~---~~ 187 (217)
T TIGR00453 136 E-ADGFIVETVDRE---------------------GLWAAQT-PQAFRTELLKKALARAKEEGFE-ITDDA-SAV---EK 187 (217)
T ss_pred c-CCCceeecCChH---------------------HeEEEeC-CCcccHHHHHHHHHHHHhcCCC-CCcHH-HHH---HH
Confidence 5 456677665522 1112233 577877766533221 0 100 00101 111 13
Q ss_pred ccCeeEEEEcCCCceeeecCChhhHHHHhH
Q psy1482 251 LDCRLYCSVVDDIEYGISVKDWPSYQIASR 280 (627)
Q Consensus 251 ~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~ 280 (627)
.|.+|...... . ...+|+++.+|..+..
T Consensus 188 ~g~~i~~~~~~-~-~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGD-A-LNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecC-c-cccccCCHHHHHHHHH
Confidence 47788777765 3 5679999999977643
No 153
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=127.50 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=20.0
Q ss_pred eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCC
Q psy1482 335 HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEH 381 (627)
Q Consensus 335 ~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~ 381 (627)
+++||++|.||.++.+.+++|++++.|++.+.+.+++||++|.||.+
T Consensus 340 ~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~ 386 (482)
T PRK14352 340 GTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGAS 386 (482)
T ss_pred CcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCC
Confidence 34444444444433333444444444444333444444444444444
No 154
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.18 E-value=1.5e-10 Score=113.57 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=72.4
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECC----CCEeCCCcEEe
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFD----NVKIEDNCEVR 368 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~----~v~Ig~~~~i~ 368 (627)
...+.+++++++++.|++++.|++++.||++|.|++++.|+ +++||++|.||.++.|.+. +.. ++.||++|
T Consensus 92 ~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~-~~~~~~~~v~IGd~v--- 167 (231)
T TIGR03532 92 GAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV-IEPPSAKPVVIEDNV--- 167 (231)
T ss_pred CCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccc-cccccCCCeEECCCc---
Confidence 45566788899999999999999999999999999999995 8999999999999988641 111 23333333
Q ss_pred eeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 369 LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 369 ~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+||.+++|.++++|+++++|+++++|..+ +++++++.
T Consensus 168 --~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~ 204 (231)
T TIGR03532 168 --LIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVA 204 (231)
T ss_pred --EECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence 23444444444444445555555554443 55555543
No 155
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.18 E-value=1.9e-10 Score=113.44 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=32.7
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
+.||++|.||.|+.| |..||++++||.|++|.+++.|..
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 678888888888888 688888888888888888888875
No 156
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.18 E-value=2.5e-10 Score=109.23 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=81.4
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC-C
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD-G 98 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~-~ 98 (627)
|||||+|.|+||+ .||+|+|++|+|||+|+++.+.++++++|+|++++..+.+.+.+.. . ..+.++... .
T Consensus 2 ~iIla~G~s~R~g---~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-~-----~~v~~v~~~~~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMG---QNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN-H-----SNITLVHNPQY 72 (188)
T ss_pred eEEECCCCcccCC---CCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-C-----CCeEEEECcCh
Confidence 7999999999996 4899999999999999999999999999999999876555444432 1 235555433 2
Q ss_pred CcchhhhhhcccccC-Cc-cCCEEEEeCCe--eccccHHHHHHHHHHH
Q psy1482 99 CYSFGDVMRDLDGKA-VI-RNDFILVSGDV--VSNINLLSALKSFKKI 142 (627)
Q Consensus 99 ~~~~gdalr~l~~~~-~i-~~dfll~~gD~--i~~~~l~~~l~~h~~~ 142 (627)
..|.+.+++.. .. .. .+.|+++.||+ +....+..+++.+...
T Consensus 73 ~~g~~~si~~~--l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 73 AEGQSSSIKLG--LELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred hcCHHHHHHHH--hcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 24666666632 22 12 24699999998 3345677888776543
No 157
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.18 E-value=3.6e-10 Score=100.20 Aligned_cols=98 Identities=13% Similarity=0.215 Sum_probs=62.1
Q ss_pred EECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCC----cEECCC
Q psy1482 308 LIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYN----TGVGEH 381 (627)
Q Consensus 308 ~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~----~~Ig~~ 381 (627)
.|.+++.+...+.||+++.|.+++.|. ++.||++|.|.. +| .+++|++++.||++|.|. +.++.+ +.||++
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~ 79 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKR 79 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCC
Confidence 344444444444455555555554443 445555555531 33 344566666666666666 556667 888888
Q ss_pred cEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 382 SKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 382 ~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
++|+.++.| ++.||+++.|++|++|.+
T Consensus 80 ~~IG~ga~I--gv~IG~~~vIGaGsvV~k 106 (147)
T cd04649 80 CLLGANSGI--GISLGDNCIVEAGLYVTA 106 (147)
T ss_pred CEECCCCEE--eEEECCCCEECCCCEEeC
Confidence 888888888 688888888888888875
No 158
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.18 E-value=1.9e-10 Score=109.74 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC-
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS- 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~- 96 (627)
+-+||||+|.|+||.+ ||+|+|++|+|||+|+++.+...|+++|+|++++....+..++.. ..+.++..
T Consensus 1 ~~~vIlAgG~s~R~g~---~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-------~~~~~~~~~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG---NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-------LPVVVVINP 70 (186)
T ss_pred CeEEEECCCCCCCCCC---CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-------CCeEEEeCC
Confidence 3589999999999985 899999999999999999999999999999998766666555433 12334432
Q ss_pred CCCcchhhhhhcccccCCc---cCCEEEEeCCe--eccccHHHHHHHHHH
Q psy1482 97 DGCYSFGDVMRDLDGKAVI---RNDFILVSGDV--VSNINLLSALKSFKK 141 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i---~~dfll~~gD~--i~~~~l~~~l~~h~~ 141 (627)
....|++.+++.. ...+ .+.+++++||+ +....+..+++.+..
T Consensus 71 ~~~~G~~~~i~~a--l~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 71 DWEEGMSSSLAAG--LEALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred ChhhCHHHHHHHH--HHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 2335666665532 2222 24599999998 345567777776653
No 159
>KOG1462|consensus
Probab=99.18 E-value=6.8e-11 Score=118.33 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=78.1
Q ss_pred eeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecC
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSY 374 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~ 374 (627)
..+.....+++++.|++++.|. .++||.+|.||+.++|.+|.|.+|++||++|.|.+|+||.++.||++|.+.+|+||.
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~ 407 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGP 407 (433)
T ss_pred eccchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecC
Confidence 3344455667777777777664 789999999999999999999999999999999999999999999999999999999
Q ss_pred CcEECCCcEEC
Q psy1482 375 NTGVGEHSKLL 385 (627)
Q Consensus 375 ~~~Ig~~~~i~ 385 (627)
+=+|.+..+.+
T Consensus 408 ~yvVeak~~~~ 418 (433)
T KOG1462|consen 408 GYVVEAKGKHG 418 (433)
T ss_pred CcEEccccccc
Confidence 99988776666
No 160
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=1.1e-10 Score=127.78 Aligned_cols=72 Identities=29% Similarity=0.444 Sum_probs=48.6
Q ss_pred eeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEE-eceEECCCCEeCCCcEE
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEV 367 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i 367 (627)
..+.+++.+|+++.|+++|.|. +++||++|.|++++.|.+++||++|.||+++.| .++.|++++.||+++.|
T Consensus 278 ~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 278 VIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred eEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 4455566777777777777774 677777777777777777777777777777766 35666666655555444
No 161
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.17 E-value=1.2e-10 Score=109.77 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=49.0
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceee-------------eeEECCCCEECCCcEEec
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------------HCIIGRNCTIGSNVRLEK 352 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-------------~s~Ig~~~~Ig~~~~I~~ 352 (627)
|..+.+++.|+.++.|+.+++|.+.+.||++++|.+++.|+ ...||++|+|.++++|..
T Consensus 27 f~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~ 98 (260)
T COG1043 27 FCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHR 98 (260)
T ss_pred eEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEec
Confidence 56677777777777777888888888999999999999885 368999999999999953
No 162
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.16 E-value=1.4e-10 Score=126.62 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=34.5
Q ss_pred EECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECC
Q psy1482 320 VIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGE 380 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~ 380 (627)
+||+++.|++++.|+ +++||++|+||+++.+.+++|++++.+++.+.+.+++||++|.||.
T Consensus 308 ii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~ 369 (448)
T PRK14357 308 VIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGA 369 (448)
T ss_pred EEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECC
Confidence 344445555555564 4677777777777766666666665555544444444444444443
No 163
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.8e-10 Score=120.90 Aligned_cols=91 Identities=27% Similarity=0.448 Sum_probs=79.3
Q ss_pred CEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEEC
Q psy1482 313 SVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLG 391 (627)
Q Consensus 313 ~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~ 391 (627)
+.+.++++||++|.|++++.|+ +++||++|+||+++.|.+|+|++++.|+++++|.+|+||.||.||++. .+|
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~------~i~ 329 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL------IIG 329 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce------eec
Confidence 7888999999999999999997 599999999999999999999999999999999999999999999822 166
Q ss_pred CCcEECCCcEECCCcccCC
Q psy1482 392 TGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 392 ~~~~ig~~~~v~~~~~v~~ 410 (627)
+ +.+|.++.+.++++++.
T Consensus 330 d-~~~g~~~~i~~g~~~~~ 347 (358)
T COG1208 330 D-VVIGINSEILPGVVVGP 347 (358)
T ss_pred c-eEecCceEEcCceEeCC
Confidence 6 66666666666666653
No 164
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.13 E-value=3.9e-10 Score=110.64 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=118.6
Q ss_pred EEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 19 QAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
.|||||+|.|+||.+ ..||+|+|++|+|||+|+++.+..++ +++|+|++++........+..... ...+.++...
T Consensus 2 ~~vILAaG~s~R~~~-~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 77 (218)
T cd02516 2 AAIILAAGSGSRMGA-DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL---SKVVKIVEGG 77 (218)
T ss_pred EEEEECCcccccCCC-CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc---CCCeEEECCc
Confidence 589999999999975 36999999999999999999999876 999999998755444443322111 1234454332
Q ss_pred CCcchhhhhhcccccCCc---cC-CEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEE
Q psy1482 98 GCYSFGDVMRDLDGKAVI---RN-DFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIV 171 (627)
Q Consensus 98 ~~~~~gdalr~l~~~~~i---~~-dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv 171 (627)
. +.+.+++. +...+ +. .++++.||. +..-.+..+++.++.. ++.++.. +... .+.
T Consensus 78 ~--~~~~si~~--al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~-----~~~~~~~--~~~~--------~~~ 138 (218)
T cd02516 78 A--TRQDSVLN--GLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY-----GAAIPAV--PVTD--------TIK 138 (218)
T ss_pred h--HHHHHHHH--HHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC-----CcEEEEE--eccc--------cEE
Confidence 2 23444442 22222 23 367778996 4455678888877543 2322222 2111 123
Q ss_pred EEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhh-hhhcCCCCCc-hhhhhcccccChh
Q psy1482 172 AYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPP-LFSDNFDFQT-QEHFIKGVLINEE 249 (627)
Q Consensus 172 ~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~-~~~~~fd~~~-~~dfi~~il~~~~ 249 (627)
..| ++|.+..+.+.. ....+.++ ++|+...+. ++....+... -.|. ..++ .
T Consensus 139 ~~~-~~g~~~~~~~r~---------------------~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~-~~~~---~ 191 (218)
T cd02516 139 RVD-DDGVVVETLDRE---------------------KLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDD-ASLV---E 191 (218)
T ss_pred Eec-CCCceeecCChH---------------------HhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcH-HHHH---H
Confidence 344 567777765532 22345566 677766655 3322111000 0011 1122 1
Q ss_pred cccCeeEEEEcCCCceeeecCChhhHH
Q psy1482 250 ILDCRLYCSVVDDIEYGISVKDWPSYQ 276 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~~~~V~s~~~y~ 276 (627)
..|.++.....+ . ...+|++|.+|.
T Consensus 192 ~~~~~v~~v~~~-~-~~~~i~t~~dl~ 216 (218)
T cd02516 192 AAGGKVALVEGS-E-DNIKITTPEDLA 216 (218)
T ss_pred HcCCCeEEEecC-c-ccccCCCHHHHh
Confidence 245667766544 2 445999998874
No 165
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.13 E-value=6.8e-10 Score=94.24 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCcEECCCCEECCCceee-eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCc
Q psy1482 317 QQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGV 394 (627)
Q Consensus 317 ~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~ 394 (627)
+++.|++++.|++++.|. +++||++|.|+++|.| .+++|++++.||. .|.+|+|++++.|++++.|+ +++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence 467888888888888885 6889999999999998 4689999999975 67899999999999999998 78888888
Q ss_pred EECCCcEEC
Q psy1482 395 LIGNKTCLS 403 (627)
Q Consensus 395 ~ig~~~~v~ 403 (627)
.||+++...
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 888886543
No 166
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.13 E-value=9.3e-10 Score=105.26 Aligned_cols=109 Identities=19% Similarity=0.365 Sum_probs=72.1
Q ss_pred eeecCeEEECCCeEECCCCEE----cCCcEECCCCEECCCceee---eeEECCCCEECCCcEEeceE--------ECCCC
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVL----KQQVVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLEKSY--------LFDNV 359 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i----~~~~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~~s~--------i~~~v 359 (627)
.....++.+|+++.++.++.+ .+.+.||++|.|++++.|. ++.||++|.|++++.|.+.. .+.+.
T Consensus 38 ~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~ 117 (192)
T PRK09677 38 IRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSP 117 (192)
T ss_pred EcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCcccccccccccc
Confidence 344567888999999999888 4568899999999999985 68899999999999885421 11111
Q ss_pred EeC---CCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEEC
Q psy1482 360 KIE---DNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLS 403 (627)
Q Consensus 360 ~Ig---~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~ 403 (627)
.+. ......+++||++|+||.++.|.++++||++++||++++|.
T Consensus 118 ~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~ 164 (192)
T PRK09677 118 NLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVT 164 (192)
T ss_pred ccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEEC
Confidence 111 11122345566666666666666566666666666655443
No 167
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.12 E-value=6.6e-10 Score=109.74 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=119.6
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCCh-HHHHHHHHhcccccCCeeEEEE
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHV-NQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~~v~~i 94 (627)
.+.|||||+|.|+||.. ..||+|+|++|+|||+|+++.+..++ +++|+|++++.. ..+...+... . .++.++
T Consensus 3 ~~~~iILAaG~s~R~g~-~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~-~----~~~~~~ 76 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGA-DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK-D----PKVTVV 76 (227)
T ss_pred ceEEEEEcCccccccCC-CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-C----CceEEe
Confidence 46799999999999963 36899999999999999999999865 899999998654 4443333211 0 124444
Q ss_pred eCCCCcchhhhhhcccccCCc-c-CCEEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceE
Q psy1482 95 VSDGCYSFGDVMRDLDGKAVI-R-NDFILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLI 170 (627)
Q Consensus 95 ~~~~~~~~gdalr~l~~~~~i-~-~dfll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~v 170 (627)
... .+.+++++. +...+ + +.++++.||. +..-.+..+++.++.. +...+. .+... . +
T Consensus 77 ~~~--~~~~~sv~~--~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-----~~~~~~--~~~~~--~------~ 137 (227)
T PRK00155 77 AGG--AERQDSVLN--GLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEET-----GAAILA--VPVKD--T------I 137 (227)
T ss_pred CCc--chHHHHHHH--HHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhC-----CCEEEE--Eeccc--c------E
Confidence 322 234555552 22223 2 3467778996 4455778888877643 222222 22211 0 2
Q ss_pred EEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhh-cCCCCCchhhhhcccccChh
Q psy1482 171 VAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFS-DNFDFQTQEHFIKGVLINEE 249 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~-~~fd~~~~~dfi~~il~~~~ 249 (627)
..++ ++|.+..+.+.. . ..... +.++|+.+.+..+- ...+ ...++.+...-.+
T Consensus 138 ~~v~-~~g~~~~~~~r~----~-----------------~~~~~-~p~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~ 191 (227)
T PRK00155 138 KRSD-DGGGIVDTPDRS----G-----------------LWAAQ-TPQGFRIELLREALARALA---EGKTITDDASAVE 191 (227)
T ss_pred EEEc-CCCceeecCChH----H-----------------heeee-CCccchHHHHHHHHHHHHh---cCCCcCcHHHHHH
Confidence 2224 355555542211 0 01112 26777776665332 1110 0111111110001
Q ss_pred cccCeeEEEEcCCCceeeecCChhhHHHHhHH
Q psy1482 250 ILDCRLYCSVVDDIEYGISVKDWPSYQIASRD 281 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~d 281 (627)
..|.+++.+..+ . .+.+|+++.++..+..-
T Consensus 192 ~~~~~i~~~~~~-~-~~~~Idt~~Dl~~ae~~ 221 (227)
T PRK00155 192 RLGKPVRLVEGR-Y-DNIKITTPEDLALAEAI 221 (227)
T ss_pred HcCCCeEEEecC-c-ccccCCCHHHHHHHHHH
Confidence 256778776654 3 57799999999887653
No 168
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=4.9e-10 Score=122.79 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=29.0
Q ss_pred EECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECC
Q psy1482 320 VIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGE 380 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~ 380 (627)
+||++|.||.+|.|. +++||++|+|++++.|.++.|++++.+++.+.+++++||+++.||.
T Consensus 318 ~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~ 379 (458)
T PRK14354 318 KVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGC 379 (458)
T ss_pred EECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcC
Confidence 334444444444443 4445555555555555445555555444444444444555444443
No 169
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.08 E-value=9.4e-10 Score=108.16 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCeEECCCCEEcCCcEECCCCEECCCceee-ee-EECCCCEECCCcEE-eceEECCCCEeCCCcEEee---------ee
Q psy1482 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HC-IIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRL---------SV 371 (627)
Q Consensus 304 ~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s-~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~---------~i 371 (627)
..++.|.+...+.-+++||+++.|.+++.|. ++ +||++ .| ++.| +++.|++++.|+.++.|.+ +.
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~ 227 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS 227 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence 3455555555555566666666666666654 45 46664 55 4666 5677778888888888543 67
Q ss_pred ecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 372 LSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 372 i~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
||++|.||.|+.| |..||++++||+|++|-.++.|..
T Consensus 228 IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~~ 264 (319)
T TIGR03535 228 IGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVTL 264 (319)
T ss_pred ECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEEE
Confidence 7888888888887 678888888888888888887765
No 170
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.08 E-value=7.4e-10 Score=97.56 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=15.5
Q ss_pred cEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 376 TGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 376 ~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
+.||++++|+.++++..++.|++++.|++++++
T Consensus 68 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 68 TTVKRGASIGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred cEECCCcEECcCCEEeCCcEECCCCEEccCCEE
Confidence 444444444444444444444444444444444
No 171
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.08 E-value=4.9e-10 Score=107.85 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=70.4
Q ss_pred eEECCCCEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEe-ceEECCCCEeCCCcEEe---------eeeecCC
Q psy1482 307 VLIGKTSVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLE-KSYLFDNVKIEDNCEVR---------LSVLSYN 375 (627)
Q Consensus 307 ~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~-~s~i~~~v~Ig~~~~i~---------~~ii~~~ 375 (627)
+.|.|+++++-+++||+|+.|.+++.|. ++.++.++.|.-++.++ ...||.|++||.++.|. .++|++|
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 5555566666666666666666655554 56666666666666553 34666666666666664 3678888
Q ss_pred cEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 376 TGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 376 ~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
|.||.++.+..|+++|++|+|+.|++|..++.+..
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 88888886666888888888888888888777654
No 172
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.05 E-value=1.6e-09 Score=106.94 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=50.7
Q ss_pred CCeEECCCCEEcCCcEECCCCEECCCceee-eeE-ECCCCE---ECCCcEEeceEECCCCEeCCCcEEeeeeecCC----
Q psy1482 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQLS-HCI-IGRNCT---IGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYN---- 375 (627)
Q Consensus 305 ~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~-~s~-Ig~~~~---Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~---- 375 (627)
.++.|+++++|..++.||+||.|.+++.|+ ++. +|.++. |- .+++|++++.||.+|.| .+.+..+
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrIn-----sGavIGhds~IG~gasI-g~tLsGg~~~~ 250 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRIS-----AGVMVGKGSDLGGGCST-MGTLSGGGNIV 250 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccc-----cCCEECCCCEECCCCEE-eEEEeCCCcee
Confidence 344444444444444444444444444332 222 333222 21 23455555566666666 3334444
Q ss_pred cEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 376 TGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 376 ~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
|.||++|.|+.||.| ++.||++++|++|++|..
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVta 283 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITA 283 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeC
Confidence 666666666666666 666666666666666654
No 173
>PRK10502 putative acyl transferase; Provisional
Probab=99.04 E-value=1.5e-09 Score=102.93 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=40.4
Q ss_pred eEEECCCeEECCCCEEcC--CcEECCCCEECCCceee---eeEECCCCEECCCcEE
Q psy1482 300 NIYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRL 350 (627)
Q Consensus 300 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I 350 (627)
.+.+|+++.|++++.|.. ++.||++|.|++++.|. .+.||++|.|+++|+|
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I 106 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYL 106 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEE
Confidence 356778888888887764 47889999999999885 5778888888888776
No 174
>PRK10502 putative acyl transferase; Provisional
Probab=99.03 E-value=1.8e-09 Score=102.40 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=61.5
Q ss_pred cEECCCCEECCCceee---eeEECCCCEECCCcEEe---ceEECCCCEeCCCcEEee----------eeecCCcEECCCc
Q psy1482 319 VVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLE---KSYLFDNVKIEDNCEVRL----------SVLSYNTGVGEHS 382 (627)
Q Consensus 319 ~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~---~s~i~~~v~Ig~~~~i~~----------~ii~~~~~Ig~~~ 382 (627)
+.||+++.|++++.|. ++.||++|.|+++|.|. ...||++|.|+++|.|.. ..+...++||+++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 3455555555555553 57788888888888884 578888888888887731 1233456666666
Q ss_pred EECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 383 KLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 383 ~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
+|+.+|+|.++++||++++|+++++|..
T Consensus 132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 132 WLAADVFVAPGVTIGSGAVVGARSSVFK 159 (182)
T ss_pred EEcCCCEEcCCCEECCCCEECCCCEEec
Confidence 6666666666667777776666666654
No 175
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.01 E-value=3e-09 Score=101.69 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=37.1
Q ss_pred ECCCeEECCCCEE--cCCcEECCCCEECCCceee---eeEECCCCEECCCcEEe
Q psy1482 303 LAEDVLIGKTSVL--KQQVVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLE 351 (627)
Q Consensus 303 i~~~~~i~~~~~i--~~~~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~ 351 (627)
+|+++.|.+.+.+ +.++.||+++.|+.+|+|. ++.||++|.||++|.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 111 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEE
Confidence 4556666666555 4678888888888888873 57899999999999885
No 176
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.00 E-value=1.4e-09 Score=116.11 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=52.0
Q ss_pred CeEECCCCEEcC---CcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEee-----eeecCCcE
Q psy1482 306 DVLIGKTSVLKQ---QVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRL-----SVLSYNTG 377 (627)
Q Consensus 306 ~~~i~~~~~i~~---~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~-----~ii~~~~~ 377 (627)
++.|+++|.|++ +++||++|.||++|.|.+|+|+++|.||++|+|.+|+|++++.|+.+|++.+ .+||+++.
T Consensus 293 ~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~ 372 (380)
T PRK05293 293 NSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEV 372 (380)
T ss_pred cCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCC
Confidence 345666666643 4677777777777777777777777777777777777777777777777754 44444444
Q ss_pred ECCCcE
Q psy1482 378 VGEHSK 383 (627)
Q Consensus 378 Ig~~~~ 383 (627)
|++++.
T Consensus 373 ~~~~~~ 378 (380)
T PRK05293 373 IGVGTV 378 (380)
T ss_pred CCCCcE
Confidence 444433
No 177
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=98.98 E-value=7.2e-09 Score=108.95 Aligned_cols=203 Identities=12% Similarity=0.032 Sum_probs=114.4
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
.+.|||||||.|+||.. ..||+|+|++|+|||+|+++.|...+ +++|+|++++....+.+.+... +. .+.++.
T Consensus 5 ~v~aIILAAG~GsRmg~-~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~-~~----~v~~v~ 78 (378)
T PRK09382 5 DISLVIVAAGRSTRFSA-EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE-IK----FVTLVT 78 (378)
T ss_pred cceEEEECCCCCccCCC-CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc-CC----eEEEeC
Confidence 36799999999999953 57999999999999999999999987 7999999986544333322211 10 144443
Q ss_pred CCCCcchhhhhhcccccCCccCC-EEEEeCCe--eccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEE
Q psy1482 96 SDGCYSFGDVMRDLDGKAVIRND-FILVSGDV--VSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVA 172 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i~~d-fll~~gD~--i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~ 172 (627)
.. .+..+.++ .+...+..+ +++..||. +..-.+..+++..+. +..++...++....+++ ...
T Consensus 79 gG--~~r~~SV~--~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~-------~~a~i~~~pv~Dtik~~----~~t 143 (378)
T PRK09382 79 GG--ATRQESVR--NALEALDSEYVLIHDAARPFVPKELIDRLIEALDK-------ADCVLPALPVADTLKRA----NET 143 (378)
T ss_pred CC--chHHHHHH--HHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhc-------CCeEEEEEEeccCcEEe----eeE
Confidence 21 22233333 122223334 66667774 333445666665432 23444555555444443 223
Q ss_pred EECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChhccc
Q psy1482 173 YECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEEILD 252 (627)
Q Consensus 173 ~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~~~g 252 (627)
+| ..++..+ +.|. . ++... .++.....+++. |... ++ +..|
T Consensus 144 ld--R~~l~~~-QTPQ---~--f~~~~------------------------l~~a~~~~~~~T---Dd~s-l~---~~~G 184 (378)
T PRK09382 144 VD--REGLKLI-QTPQ---L--SRTKT------------------------LKAAADGRGDFT---DDSS-AA---EAAG 184 (378)
T ss_pred cC--cccEEEE-ECCC---C--CCHHH------------------------HHHHHhCCCCcc---cHHH-HH---HHcC
Confidence 33 3344444 3342 0 01110 001111111211 1111 12 2458
Q ss_pred CeeEEEEcCCCceeeecCChhhHHHHhHH
Q psy1482 253 CRLYCSVVDDIEYGISVKDWPSYQIASRD 281 (627)
Q Consensus 253 ~~I~~~~~~~~~~~~~V~s~~~y~~a~~d 281 (627)
.+|+.+.-+ . .|..|++|+++..+...
T Consensus 185 ~~V~~v~g~-~-~n~KITtpeDL~~A~~~ 211 (378)
T PRK09382 185 GKVALVEGS-E-DLHKLTYKEDLKMADLL 211 (378)
T ss_pred CcEEEEECC-C-cccCCCCHHHHHHHHHH
Confidence 888887665 4 89999999999888764
No 178
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.96 E-value=5e-09 Score=100.20 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=35.0
Q ss_pred eEECCCCEECCCcEE---eceEECCCCEeCCCcEEee-------------eeecCCcEECCCcEECCCCEECCCcEECCC
Q psy1482 336 CIIGRNCTIGSNVRL---EKSYLFDNVKIEDNCEVRL-------------SVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399 (627)
Q Consensus 336 s~Ig~~~~Ig~~~~I---~~s~i~~~v~Ig~~~~i~~-------------~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~ 399 (627)
+.||++|.|+.+|.| .+..||++|.|+.+|.|.. ...+..++||++++|+.+|+|.++++||++
T Consensus 76 i~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~ 155 (203)
T PRK09527 76 IHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDN 155 (203)
T ss_pred cEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCC
Confidence 344444444444444 1245555555555555531 112233455555555555555555555555
Q ss_pred cEECCCcccC
Q psy1482 400 TCLSGVKLPS 409 (627)
Q Consensus 400 ~~v~~~~~v~ 409 (627)
++|++|++|.
T Consensus 156 ~vIgagsvV~ 165 (203)
T PRK09527 156 SVIGAGSVVT 165 (203)
T ss_pred CEECCCCEEc
Confidence 5555555554
No 179
>PLN02694 serine O-acetyltransferase
Probab=98.94 E-value=3.4e-09 Score=105.12 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=15.2
Q ss_pred EEECCCeEECCCCEEcC--CcEECCCCEECCCcee
Q psy1482 301 IYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQL 333 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I 333 (627)
+-|++++.||+++.|.. +++||++|.||++|.|
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I 195 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI 195 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEE
Confidence 44555555555554432 3444444444444433
No 180
>KOG3121|consensus
Probab=98.94 E-value=2e-09 Score=92.38 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=50.7
Q ss_pred CeEEECCCeEECCCCEEcC---CcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCC
Q psy1482 299 NNIYLAEDVLIGKTSVLKQ---QVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYN 375 (627)
Q Consensus 299 ~~~~i~~~~~i~~~~~i~~---~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~ 375 (627)
+++.+...+.+..+++|.+ ++.+|..|.++.+++|++.. -....+...-+..||++|.|+++|++..+.||.-
T Consensus 32 QNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~----K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsy 107 (184)
T KOG3121|consen 32 QNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPM----KIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSY 107 (184)
T ss_pred ceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCch----HHhcCCceeeeeeecceEEEecceEeehhhheee
Confidence 4555555566666666653 34555555555555553100 0000000001234555555555555555555555
Q ss_pred cEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 376 TGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 376 ~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
+++|.++.||++|++.+.++|-+++++++.+.++
T Consensus 108 Vh~GknaviGrrCVlkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 108 VHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred eEeccceeEcCceEhhhheeccCCcccCcccccC
Confidence 5555555555555555555555555554444443
No 181
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.94 E-value=6.7e-09 Score=99.35 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=74.7
Q ss_pred CcEECCCCEECCCcee-----eeeEECCCCEECCCcEEe---ceEECCCCEeCCCcEEeeee------------------
Q psy1482 318 QVVIGEGSSIGENTQL-----SHCIIGRNCTIGSNVRLE---KSYLFDNVKIEDNCEVRLSV------------------ 371 (627)
Q Consensus 318 ~~~ig~~~~Ig~~~~I-----~~s~Ig~~~~Ig~~~~I~---~s~i~~~v~Ig~~~~i~~~i------------------ 371 (627)
+..+|+++.++.+|.+ ....||++|.|++++.|. .+.||++|.|+.++.|.+..
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3445555555555555 257899999999999994 68999999999999996421
Q ss_pred ----ecCCcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 372 ----LSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 372 ----i~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
-...++||++++|+.+++|.++++||+++.|+++++|..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 124689999999999999999999999999999999975
No 182
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.93 E-value=9.1e-09 Score=96.49 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=26.6
Q ss_pred cCCcEECCCCEECCCceee---eeEECCCCEECCCcEEe
Q psy1482 316 KQQVVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLE 351 (627)
Q Consensus 316 ~~~~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~ 351 (627)
+.++.||++|.|+.++.|. +.+||++|.|+++|.|.
T Consensus 60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~ 98 (169)
T cd03357 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIY 98 (169)
T ss_pred CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEE
Confidence 3456677777777777663 57899999999998884
No 183
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.93 E-value=1.4e-08 Score=100.54 Aligned_cols=117 Identities=13% Similarity=0.184 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhC-CCcEEEEEecC-ChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLS-GIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~-gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
+.|||||+|.|+||.- ..||+|+|++|+|||.|+++.+..+ ++.+|+|+++. ....+.+++....+. ...+.++.
T Consensus 3 ~~~iIlAaG~g~R~g~-~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 79 (230)
T PRK13385 3 YELIFLAAGQGKRMNA-PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA--DQRVEVVK 79 (230)
T ss_pred eEEEEECCeeccccCC-CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC--CCceEEcC
Confidence 5789999999999963 4699999999999999999999875 58999999985 345555566542221 11344543
Q ss_pred CCCCcchhhhhhcccccCCc-cCC-EEEEeCCee--ccccHHHHHHHHHH
Q psy1482 96 SDGCYSFGDVMRDLDGKAVI-RND-FILVSGDVV--SNINLLSALKSFKK 141 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i-~~d-fll~~gD~i--~~~~l~~~l~~h~~ 141 (627)
.... ..++++. +...+ ..+ ++++.||.- ..-.+..+++.++.
T Consensus 80 ~g~~--r~~sv~~--gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~ 125 (230)
T PRK13385 80 GGTE--RQESVAA--GLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAK 125 (230)
T ss_pred CCch--HHHHHHH--HHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhh
Confidence 2221 1233331 11112 234 566689983 34467788887664
No 184
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.92 E-value=9.9e-09 Score=96.94 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=22.6
Q ss_pred cCCcEECCCCEECCCceee---eeEECCCCEECCCcEEe
Q psy1482 316 KQQVVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLE 351 (627)
Q Consensus 316 ~~~~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~ 351 (627)
+.++.||+++.|+.+|+|. ...||++|.|+++|+|.
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~ 109 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIY 109 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEE
Confidence 3344444444444444443 34899999999999884
No 185
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=4.5e-08 Score=91.86 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=143.5
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC-
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS- 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~- 96 (627)
+-+||.|-=..|||- -|||--|+|+|||.|+.+...++|..+++|.+. .+.|.+.+.+ ++ .+.+..
T Consensus 4 ~~viIPAR~~STRLp----gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~--~G-----~~avmT~ 70 (247)
T COG1212 4 FVVIIPARLASTRLP----GKPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAVQA--FG-----GEAVMTS 70 (247)
T ss_pred eEEEEecchhcccCC----CCchhhhCCchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH--hC-----CEEEecC
Confidence 457788877789985 499999999999999999999999999998886 5677777776 22 344432
Q ss_pred -CCCcchh---hhhhcccccCCccCCEEE-EeCCeec--cccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 97 -DGCYSFG---DVMRDLDGKAVIRNDFIL-VSGDVVS--NINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 97 -~~~~~~g---dalr~l~~~~~i~~dfll-~~gD~i~--~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
+-..|+- .+++.+ .+-+.+.+| +.||.=+ ...+..+++..+.. .-..+|++..-..+...+.++-.
T Consensus 71 ~~h~SGTdR~~Ev~~~l---~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~----~~~~aTl~~~i~~~ee~~nPN~V 143 (247)
T COG1212 71 KDHQSGTDRLAEVVEKL---GLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS----NADMATLAVKITDEEEAFNPNVV 143 (247)
T ss_pred CCCCCccHHHHHHHHhc---CCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC----CcceeeeeeecCCHHHhcCCCcE
Confidence 2223332 333322 122233333 6899732 33456666555443 23566666655544444435556
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCC-CCc-hhhhhcccccC
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFD-FQT-QEHFIKGVLIN 247 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd-~~~-~~dfi~~il~~ 247 (627)
.++.| ..|+-++|+..+ +|-. .++.. ...-+.-.|||.|+..+|+.|..-.. .-+ .+.+-+ | .
T Consensus 144 KvV~d-~~g~ALYFSRs~-------iP~~--rd~~~--~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQ--L-R 208 (247)
T COG1212 144 KVVLD-KEGYALYFSRAP-------IPYG--RDNFG--GTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQ--L-R 208 (247)
T ss_pred EEEEc-CCCcEEEEEcCC-------CCCc--ccccC--CcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHH--H-H
Confidence 66777 679999998876 2311 00000 01235668999999999987765311 111 111110 0 0
Q ss_pred hhcccCeeEEEEcCCCceeeecCChhhHHHHhHHH
Q psy1482 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDI 282 (627)
Q Consensus 248 ~~~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~di 282 (627)
..-.|.+|++.++++- ....|++++++.++.+-+
T Consensus 209 ~Le~G~kI~v~i~~~~-p~~gVDT~EDLe~v~~~~ 242 (247)
T COG1212 209 VLENGEKIHVEIVKEV-PSIGVDTPEDLERVRKIL 242 (247)
T ss_pred HHHcCCeeEEEEeccC-CCCCCCCHHHHHHHHHHH
Confidence 1136999999999854 558999999998886644
No 186
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.91 E-value=3.1e-08 Score=97.14 Aligned_cols=207 Identities=12% Similarity=0.067 Sum_probs=125.5
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe---
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV--- 95 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~--- 95 (627)
|||+|+|.++||. +|.++|++|+|||.|+++.+..++ +++|+|.+. .+.+.++... ++ ..+.+..
T Consensus 2 aiIpArG~Skr~~----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~--~g---~~v~~~r~~~ 70 (222)
T TIGR03584 2 AIIPARGGSKRIP----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS--YG---ASVPFLRPKE 70 (222)
T ss_pred EEEccCCCCCCCC----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH--cC---CEeEEeChHH
Confidence 7999999999994 599999999999999999999887 577766443 3556666554 22 3333321
Q ss_pred -CCCCcchhhhhhccccc--CCcc-CCEEEEeCCee--ccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcce
Q psy1482 96 -SDGCYSFGDVMRDLDGK--AVIR-NDFILVSGDVV--SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDL 169 (627)
Q Consensus 96 -~~~~~~~gdalr~l~~~--~~i~-~dfll~~gD~i--~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 169 (627)
.....+..++++..... ..-. +.++++.||.- ..-++..+++.+++. ++...+.+.+...+. +.
T Consensus 71 l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~-----~~ds~~sv~~~~~~~-~~---- 140 (222)
T TIGR03584 71 LADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP-----NAHFVFSVTSFAFPI-QR---- 140 (222)
T ss_pred HcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEeeccCCCh-HH----
Confidence 23445666776643221 0011 33888899984 345788888887753 344444444432211 11
Q ss_pred EEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChh
Q psy1482 170 IVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEE 249 (627)
Q Consensus 170 vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~ 249 (627)
....+ ++|++..+.......+.=.+| .....+.++|+++++.+.. .. -
T Consensus 141 ~~~~~-~~g~~~~~~~~~~~~~rQd~~------------~~y~~nga~y~~~~~~~~~--~~-----------------~ 188 (222)
T TIGR03584 141 AFKLK-ENGGVEMFFPEHFNTRSQDLE------------EAYHDAGQFYWGKSQAWLE--SG-----------------P 188 (222)
T ss_pred heEEC-CCCcEEecCCCcccCCCCCCc------------hheeeCCeEEEEEHHHHHh--cC-----------------C
Confidence 12233 456655543211000000111 2234678899988876431 10 0
Q ss_pred cccCeeEEEEcCCCceeeecCChhhHHHHhH
Q psy1482 250 ILDCRLYCSVVDDIEYGISVKDWPSYQIASR 280 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~ 280 (627)
..|.+++.|.++.. ...||+++.++..+..
T Consensus 189 ~~~~~~~~~~m~~~-~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 189 IFSPHSIPIVLPRH-LVQDIDTLEDWERAEL 218 (222)
T ss_pred ccCCCcEEEEeCcc-ceeCCCCHHHHHHHHH
Confidence 23667888998865 8999999999877644
No 187
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.91 E-value=5e-09 Score=113.58 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=83.2
Q ss_pred EEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECC----------------C---CEECCCcEEeceEECCCCEe
Q psy1482 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGR----------------N---CTIGSNVRLEKSYLFDNVKI 361 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~----------------~---~~Ig~~~~I~~s~i~~~v~I 361 (627)
.+|++++.|+ ++.|+ +++||++|.|+++|.|.+++|+. + ++||++|+|.+++|+++|.|
T Consensus 316 s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788999998 88885 78999999999999999877744 3 38999999999999999999
Q ss_pred CCCcEEe-eeeecCCcEECCCcEECCC-CEECCCcEECCCcEE
Q psy1482 362 EDNCEVR-LSVLSYNTGVGEHSKLLNG-CLLGTGVLIGNKTCL 402 (627)
Q Consensus 362 g~~~~i~-~~ii~~~~~Ig~~~~i~~~-~ii~~~~~ig~~~~v 402 (627)
|++|.|. ..-+.+..++|+++.+++| ++||+++.|+++++|
T Consensus 394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 394 GKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred CCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 9999996 3346666677777777777 588888888887653
No 188
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.91 E-value=9.3e-09 Score=88.92 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEECCCeEECCCCEEcC--CcEECCCCEECCCceeee
Q psy1482 301 IYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQLSH 335 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~~ 335 (627)
+++++++.|++++.|.+ ++.||++|.|+++|.|.+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEEC
Confidence 45666666666666655 566666666666666543
No 189
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.91 E-value=5.2e-09 Score=99.49 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCC
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSD 97 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~ 97 (627)
|.|||||||.|+||.+ ||+|+|++|+|||+|+++.+... +.+|+|+++..... + .. ..+.++..+
T Consensus 1 ~~~iILAgG~s~Rmg~---~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~---~-~~-------~~~~~v~~~ 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG---DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER---Y-AL-------LGVPVIPDE 65 (181)
T ss_pred CcEEEECCCccccCCC---CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH---H-hh-------cCCcEeeCC
Confidence 4689999999999974 99999999999999999999887 89999999875543 1 11 123444332
Q ss_pred -CCcchhhhhhcccccCCc-cCCEEEEeCCee--ccccHHHHHHHH
Q psy1482 98 -GCYSFGDVMRDLDGKAVI-RNDFILVSGDVV--SNINLLSALKSF 139 (627)
Q Consensus 98 -~~~~~gdalr~l~~~~~i-~~dfll~~gD~i--~~~~l~~~l~~h 139 (627)
...|...+++.. ...+ .+.++++.||+- ..-.+..+++.+
T Consensus 66 ~~~~G~~~si~~~--l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAA--LRAAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHH--HHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 344555555522 2222 356999999993 334556666554
No 190
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.90 E-value=5.9e-09 Score=110.87 Aligned_cols=81 Identities=19% Similarity=0.367 Sum_probs=73.5
Q ss_pred CCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcE
Q psy1482 322 GEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC 401 (627)
Q Consensus 322 g~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~ 401 (627)
.+.+.||++|.|.+|+||++|+|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+. +|+||.+++|++++.
T Consensus 276 ~~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~ 352 (369)
T TIGR02092 276 EPPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVK 352 (369)
T ss_pred CCCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCE
Confidence 366777788888899999999997 46999999999999999999999999999999999998 799999999999998
Q ss_pred ECCC
Q psy1482 402 LSGV 405 (627)
Q Consensus 402 v~~~ 405 (627)
+.+.
T Consensus 353 ~~~~ 356 (369)
T TIGR02092 353 IAGT 356 (369)
T ss_pred eCCC
Confidence 8664
No 191
>KOG3121|consensus
Probab=98.89 E-value=2.7e-09 Score=91.62 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=37.0
Q ss_pred eeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcEECCC
Q psy1482 334 SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399 (627)
Q Consensus 334 ~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~ 399 (627)
-+..||+++.|++.|++....|+..|++|.||.|+ +|++-+.|.|.+++++++.+.+.+..+++.+
T Consensus 83 fp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 83 FPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence 36667777777777777666666666666655553 4444444444444444444444444444433
No 192
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.88 E-value=1.3e-08 Score=88.05 Aligned_cols=85 Identities=25% Similarity=0.387 Sum_probs=52.1
Q ss_pred cEECCCCEECCCceee---eeEECCCCEECCCcEEece---EECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECC
Q psy1482 319 VVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRLEKS---YLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGT 392 (627)
Q Consensus 319 ~~ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I~~s---~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~ 392 (627)
+.||++|.|++++.|. ++.||++|.|+++|+|.++ .++.+..+.......+++||+++.|+.++.+.+++.|++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 4566667777777664 5889999999999988654 222233332233344566666666666666655566666
Q ss_pred CcEECCCcEEC
Q psy1482 393 GVLIGNKTCLS 403 (627)
Q Consensus 393 ~~~ig~~~~v~ 403 (627)
++.++.++.+.
T Consensus 82 ~~~i~~~~~v~ 92 (109)
T cd04647 82 GAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEe
Confidence 66665555444
No 193
>PRK10191 putative acyl transferase; Provisional
Probab=98.88 E-value=1.1e-08 Score=92.39 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=5.2
Q ss_pred EECCCCEeCCCcE
Q psy1482 354 YLFDNVKIEDNCE 366 (627)
Q Consensus 354 ~i~~~v~Ig~~~~ 366 (627)
.|++++.||.++.
T Consensus 94 ~IGd~~~Ig~~~~ 106 (146)
T PRK10191 94 HIGNGVELGANVI 106 (146)
T ss_pred EECCCcEEcCCCE
Confidence 3344444443333
No 194
>PLN02694 serine O-acetyltransferase
Probab=98.88 E-value=8.8e-09 Score=102.16 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=36.5
Q ss_pred eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 335 HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 335 ~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+++||++|.||++|.| .+++++.. +.++..++++||++|.||.+++|..+++||++++||++++|
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV 245 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEE
Confidence 4566666666666655 33333321 23344455666666666666666556666666666666543
No 195
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.88 E-value=1.8e-08 Score=99.19 Aligned_cols=42 Identities=7% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEECCCCEEcCCcEECCCC-EECCCceeeeeEECCCCEECCCcEE
Q psy1482 307 VLIGKTSVLKQQVVIGEGS-SIGENTQLSHCIIGRNCTIGSNVRL 350 (627)
Q Consensus 307 ~~i~~~~~i~~~~~ig~~~-~Ig~~~~I~~s~Ig~~~~Ig~~~~I 350 (627)
++|+++++|.+.++|..++ +||++ .| ++.|+++|.||++|.|
T Consensus 166 AyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~I 208 (319)
T TIGR03535 166 AHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDI 208 (319)
T ss_pred cEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEE
Confidence 4444444444444444555 34443 33 3445555555555544
No 196
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.88 E-value=1.1e-08 Score=108.49 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=73.8
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCC
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNK 399 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~ 399 (627)
.+.+.+.|++++.|.+++||++|.|+.+ .|.+|+|+++|.|+++|+|.+|+|++++.||++++|. +|+||++++|+.+
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~ 356 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR-NAIIDKNVRIGEG 356 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe-eeEECCCCEECCC
Confidence 4556677777777888999999999987 8899999999999999999999999999999999997 8999999999999
Q ss_pred cEEC
Q psy1482 400 TCLS 403 (627)
Q Consensus 400 ~~v~ 403 (627)
+.|+
T Consensus 357 ~~i~ 360 (361)
T TIGR02091 357 VVIG 360 (361)
T ss_pred CEeC
Confidence 8775
No 197
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.87 E-value=1.2e-08 Score=102.53 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=53.3
Q ss_pred EEEEEeCCCCCCCCcCCCCccccccC---CeehHHHHHHHHHh--------CCCcEEEEEecCChHHHHHHHHhcc
Q psy1482 19 QAVIVTDTFNRNFFPVPEPYCLLPLV---NKCLLEYTLEHLHL--------SGIEEIIVFCTSHVNQIRELVKRKE 83 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl~~PK~Llpi~---g~pli~~~l~~L~~--------~gi~~i~vv~~~~~~~i~~~l~~~~ 83 (627)
-+||||||.||||. .+.||+|+||+ |+|+|+|+++.+.. .+|..+++...+..+++++|+++..
T Consensus 2 a~viLaGG~GtRLg-~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGGLGTRLG-KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCCCccccC-CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 47999999999997 38999999999 99999999999976 2455555555567888999998854
No 198
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.87 E-value=1.8e-08 Score=85.91 Aligned_cols=64 Identities=23% Similarity=0.463 Sum_probs=33.5
Q ss_pred eEECCCCEECCCcEEeceEECCCCEeCCCcE---EeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECC
Q psy1482 336 CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCE---VRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404 (627)
Q Consensus 336 s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~---i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~ 404 (627)
++||+++.||++|. |++++.|+.++. +.+++|++++.|+.++.+..++.|++++.|++++.+..
T Consensus 23 ~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 23 IVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 34455555555543 233444444443 34555666666666666655555555555555555443
No 199
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.86 E-value=1.4e-08 Score=81.80 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=19.1
Q ss_pred EECCCCEECCCceeee-eEECCCCEECCCcEEece
Q psy1482 320 VIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEKS 353 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~-s~Ig~~~~Ig~~~~I~~s 353 (627)
.||++|.|++++.|.+ +.||++|.|+++|.|.++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 3455555555555543 666666666666666443
No 200
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.85 E-value=1.4e-08 Score=107.20 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=56.3
Q ss_pred ECCCCEEcCCcEECCCCEECCCcee-eeeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCc-EEC
Q psy1482 309 IGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS-KLL 385 (627)
Q Consensus 309 i~~~~~i~~~~~ig~~~~Ig~~~~I-~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~-~i~ 385 (627)
+.+++.+.+++.||++|.| .++.| ++++||++|.|+ ++.| .+|+|++++.|+ +|.|.+|+|+++++|+.+. .+.
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~ 321 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIV 321 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceee
Confidence 3445566666666666666 45554 245555555554 2333 345555555554 4555677777777777763 665
Q ss_pred CCCEECCCcEECCCcEECC
Q psy1482 386 NGCLLGTGVLIGNKTCLSG 404 (627)
Q Consensus 386 ~~~ii~~~~~ig~~~~v~~ 404 (627)
+++|++++.|+.++.+..
T Consensus 322 -~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 322 -DSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred -cCEEcCCCEECCCccccc
Confidence 678888888888776664
No 201
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.85 E-value=7.8e-09 Score=111.78 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=71.1
Q ss_pred eEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECC-------------------CCEECCCcEEeceEECCCCE
Q psy1482 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGR-------------------NCTIGSNVRLEKSYLFDNVK 360 (627)
Q Consensus 300 ~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~-------------------~~~Ig~~~~I~~s~i~~~v~ 360 (627)
+++|++++.| +++.|+ +++||++|.||++|.|.+|+|+. +|.||++|+|.+|+|++++.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 4678888888 788885 68999999999999999999865 79999999999999999999
Q ss_pred eCCCcEEeeee-ecCCcEECCCcEECCC-CEECCCcEECCCc
Q psy1482 361 IEDNCEVRLSV-LSYNTGVGEHSKLLNG-CLLGTGVLIGNKT 400 (627)
Q Consensus 361 Ig~~~~i~~~i-i~~~~~Ig~~~~i~~~-~ii~~~~~ig~~~ 400 (627)
||++|+|.++. +..-=.-.+++.|++| |+|+.++++.+++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (429)
T PRK02862 386 IGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT 427 (429)
T ss_pred ECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence 99999986332 1111111123344434 4455555555444
No 202
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.84 E-value=1.8e-08 Score=93.51 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=16.1
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
++||++|+||.+++|..+++||+++.||++++|
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 344555555555554444445555544444433
No 203
>PRK10191 putative acyl transferase; Provisional
Probab=98.82 E-value=2.4e-08 Score=90.29 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=9.8
Q ss_pred ecCCcEECCCcEECCCCEECCCcEECC
Q psy1482 372 LSYNTGVGEHSKLLNGCLLGTGVLIGN 398 (627)
Q Consensus 372 i~~~~~Ig~~~~i~~~~ii~~~~~ig~ 398 (627)
||++|+||.++.+..++.||+++.||+
T Consensus 95 IGd~~~Ig~~~~I~~~v~IG~~~~Iga 121 (146)
T PRK10191 95 IGNGVELGANVIILGDITIGNNVTVGA 121 (146)
T ss_pred ECCCcEEcCCCEEeCCCEECCCCEECC
Confidence 333333333333333333333333333
No 204
>PLN02357 serine acetyltransferase
Probab=98.81 E-value=2e-08 Score=102.42 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=37.7
Q ss_pred EEECCCeEECCCCEEcC--CcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEE-eeeeecCCc
Q psy1482 301 IYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV-RLSVLSYNT 376 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i-~~~ii~~~~ 376 (627)
+.|++++.||+++.|.. +++||++|.||++|.|. +++||.. |......+++||++|.||.|+.| +++.||+++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence 44555555555555543 34445444444444432 2223221 01111234556666666666555 344555555
Q ss_pred EECCCcEEC
Q psy1482 377 GVGEHSKLL 385 (627)
Q Consensus 377 ~Ig~~~~i~ 385 (627)
+||.+++|.
T Consensus 304 ~IGAgSVV~ 312 (360)
T PLN02357 304 KIGAGSVVL 312 (360)
T ss_pred EECCCCEEC
Confidence 555555544
No 205
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.81 E-value=5e-08 Score=84.07 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=15.2
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+.||++|+||.++.|..++.||+++.|++++.+
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV 89 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 344444444444444444444444444444433
No 206
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.81 E-value=2.1e-08 Score=95.71 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC-
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS- 96 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~- 96 (627)
+-+||||||.|+||. ..||+|+|++|+|||+|+++.+.. ++++|+|++...... +... .+ .+.++..
T Consensus 1 ~~~iILAgG~s~Rmg--~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-~~-----~~~~i~~~ 68 (186)
T TIGR02665 1 ISGVILAGGRARRMG--GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA-GF-----GLPVVPDA 68 (186)
T ss_pred CeEEEEcCCccccCC--CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-cC-----CCcEEecC
Confidence 458999999999997 359999999999999999999975 599998888754322 2211 11 1233432
Q ss_pred -CCCcchhhhhhcccccCCcc-CCEEEEeCCe-eccc-cHHHHHHHH
Q psy1482 97 -DGCYSFGDVMRDLDGKAVIR-NDFILVSGDV-VSNI-NLLSALKSF 139 (627)
Q Consensus 97 -~~~~~~gdalr~l~~~~~i~-~dfll~~gD~-i~~~-~l~~~l~~h 139 (627)
....|.+++++.. ...++ +.++++.||. +.+. .+..+++.+
T Consensus 69 ~~~~~g~~~si~~a--l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 113 (186)
T TIGR02665 69 LADFPGPLAGILAG--LRWAGTDWVLTVPCDTPFLPEDLVARLAAAL 113 (186)
T ss_pred CCCCCCCHHHHHHH--HHhcCCCeEEEEecCCCcCCHHHHHHHHHHh
Confidence 3446777766632 22233 4699999998 4444 345555544
No 207
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.81 E-value=2.3e-08 Score=96.16 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=72.2
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.|.|||||+|.|+||. ..||+|+|++|+|||+|+++.+. .++++|+|+++.....+. . ++ +.++..
T Consensus 3 ~~~~vILA~G~s~Rm~--~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~--~~-----~~~v~~ 68 (193)
T PRK00317 3 PITGVILAGGRSRRMG--GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARYA----A--FG-----LPVIPD 68 (193)
T ss_pred CceEEEEcCCCcccCC--CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHHH----h--cC-----CcEEeC
Confidence 4789999999999995 36999999999999999999998 789999999876533321 1 11 223322
Q ss_pred CC--CcchhhhhhcccccCCcc-CCEEEEeCCe-ecc-ccHHHHHHHH
Q psy1482 97 DG--CYSFGDVMRDLDGKAVIR-NDFILVSGDV-VSN-INLLSALKSF 139 (627)
Q Consensus 97 ~~--~~~~gdalr~l~~~~~i~-~dfll~~gD~-i~~-~~l~~~l~~h 139 (627)
.. ..|...+++.. ....+ +.++++.||. +.+ ..+..+++.+
T Consensus 69 ~~~~~~g~~~~i~~~--l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 114 (193)
T PRK00317 69 SLADFPGPLAGILAG--LKQARTEWVLVVPCDTPFIPPDLVARLAQAA 114 (193)
T ss_pred CCCCCCCCHHHHHHH--HHhcCCCeEEEEcCCcCCCCHHHHHHHHHhh
Confidence 21 23444555422 22233 4588899999 333 3556666654
No 208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.81 E-value=3.2e-08 Score=79.73 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=14.4
Q ss_pred ECCCeEECCCCEEcCCcEECCCCEECCCceee
Q psy1482 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS 334 (627)
Q Consensus 303 i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~ 334 (627)
+++++.|++++.|++++.||++|.|++++.|.
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 34 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIG 34 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEE
Confidence 34444444444444444444444444444443
No 209
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.80 E-value=2.4e-08 Score=96.39 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=62.2
Q ss_pred ceeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeee-eEECCCCEECCCcEEec---------eEECCCCEeCC
Q psy1482 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEK---------SYLFDNVKIED 363 (627)
Q Consensus 294 ~~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~-s~Ig~~~~Ig~~~~I~~---------s~i~~~v~Ig~ 363 (627)
...++..+||++++++.+.+.|.=++.++.+|.|..++.++. ..||+||+||.++.|.+ .+|++||.||.
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 445666777777777777777766777888888877777763 67899999999998854 35555555555
Q ss_pred CcE-EeeeeecCCcEECCCcEECCCC
Q psy1482 364 NCE-VRLSVLSYNTGVGEHSKLLNGC 388 (627)
Q Consensus 364 ~~~-i~~~ii~~~~~Ig~~~~i~~~~ 388 (627)
|+. ++++++|++|+|+.|+.|..++
T Consensus 194 ns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 194 NSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred ccceEeeeEeCCCcEEecceEEeCCc
Confidence 553 2444444444444444444433
No 210
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.7e-08 Score=103.17 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=80.4
Q ss_pred CCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEE
Q psy1482 311 KTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLL 390 (627)
Q Consensus 311 ~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii 390 (627)
++..|......-+.+++..++.+.+|.|+.+|.|.. +|.+|+|+.+|+|+.+|.|.+|+|.++|.||.||.|. +|||
T Consensus 272 ~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aII 348 (393)
T COG0448 272 RNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAII 348 (393)
T ss_pred CCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEEe
Confidence 344454455566677777777799999999999965 8999999999999999999999999999999999999 8999
Q ss_pred CCCcEECCCcEECCCc
Q psy1482 391 GTGVLIGNKTCLSGVK 406 (627)
Q Consensus 391 ~~~~~ig~~~~v~~~~ 406 (627)
..+|+|++|+.|+...
T Consensus 349 Dk~v~I~~g~~i~~~~ 364 (393)
T COG0448 349 DKNVVIGEGVVIGGDK 364 (393)
T ss_pred CCCcEeCCCcEEcCCc
Confidence 9999999999888753
No 211
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.79 E-value=4.8e-08 Score=92.29 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.1
Q ss_pred EECCCCEE
Q psy1482 337 IIGRNCTI 344 (627)
Q Consensus 337 ~Ig~~~~I 344 (627)
.||++|+|
T Consensus 101 ~I~~~v~i 108 (183)
T PRK10092 101 MLAPGVHI 108 (183)
T ss_pred EECCCCEE
Confidence 33333333
No 212
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.79 E-value=2.5e-08 Score=95.57 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHH---HHHHHhcccccCCeeEEEE
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI---RELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i---~~~l~~~~~~~~~~~v~~i 94 (627)
+.|||||||.|+||. .||.|++++|+|||+|+++.+...++.+++|++++..+.+ .++... ...+.++
T Consensus 1 ~~~vILAgG~s~Rmg---~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~------~~~~~~~ 71 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG---ENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA------DERIMLV 71 (190)
T ss_pred CeEEEEcCCccccCC---CCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc------CCCeEEE
Confidence 358999999999996 4899999999999999999888889999999998654332 222111 1124444
Q ss_pred e-CCCCcchhhhhhccccc--CCccCCEEEEeCCee--ccccHHHHHHHH
Q psy1482 95 V-SDGCYSFGDVMRDLDGK--AVIRNDFILVSGDVV--SNINLLSALKSF 139 (627)
Q Consensus 95 ~-~~~~~~~gdalr~l~~~--~~i~~dfll~~gD~i--~~~~l~~~l~~h 139 (627)
. ++...|.+.+++..... ..-.+.++++.||+- ..-.+..+++..
T Consensus 72 ~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~ 121 (190)
T TIGR03202 72 CCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALA 121 (190)
T ss_pred ECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3 33334555544421111 101245889999983 233455555543
No 213
>KOG1460|consensus
Probab=98.77 E-value=2.1e-08 Score=97.04 Aligned_cols=73 Identities=23% Similarity=0.475 Sum_probs=68.4
Q ss_pred CEEcCCcEECCCCEECCCceee-eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEEC
Q psy1482 313 SVLKQQVVIGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLL 385 (627)
Q Consensus 313 ~~i~~~~~ig~~~~Ig~~~~I~-~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 385 (627)
+.|.+++.|.+++++.+.+.|+ |..||.+++||++++|.+|+|.+++.|.+|+.+.+|+||.++.||..+++.
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVE 356 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeec
Confidence 4577899999999999999998 789999999999999999999999999999999999999999999998886
No 214
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=98.77 E-value=4.3e-08 Score=97.63 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=77.3
Q ss_pred CCceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHh-CCCcEEEEEecCC-hHHHHHHHHhcccccCCeeEE
Q psy1482 15 DEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHL-SGIEEIIVFCTSH-VNQIRELVKRKEKSLVGTLIT 92 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~-~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~~v~ 92 (627)
...+.+||||||.|+||.. ..||+|+|++|+|||+|+++.+.. .++++|+|+++.. .+.++..+.. +. .++.
T Consensus 22 ~~~i~aIILAAG~gsRmg~-~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--~~---~~i~ 95 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMGA-NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--ID---VPLK 95 (252)
T ss_pred cCceEEEEEcccccccCCC-CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--cC---CceE
Confidence 3457899999999999974 469999999999999999999987 5899999999864 4555555543 22 3344
Q ss_pred EEeCC--CCcchhhhhhcccccCCccCCEEEEeCCe----eccccHHHHHHHHHHH
Q psy1482 93 LIVSD--GCYSFGDVMRDLDGKAVIRNDFILVSGDV----VSNINLLSALKSFKKI 142 (627)
Q Consensus 93 ~i~~~--~~~~~gdalr~l~~~~~i~~dfll~~gD~----i~~~~l~~~l~~h~~~ 142 (627)
++... ...|.-.++..+ -.+..+|+.+|. +..-.+..+++.....
T Consensus 96 ~v~gg~~r~~SV~~gl~~l-----~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 96 FALPGKERQDSVFNGLQEV-----DANSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred EcCCCCchHHHHHHHHHhc-----cCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 44321 122333333322 123456777774 2333456777766543
No 215
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.77 E-value=2.2e-08 Score=108.16 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=64.5
Q ss_pred ceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCcc
Q psy1482 331 TQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKL 407 (627)
Q Consensus 331 ~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~ 407 (627)
+.+.+|+||++|.| .+|.|.+|+||++|.||++|.|.+|+|+++|.||++++|. +|+|+++++|++++.|++++.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe-eEEECCCCEECCCCEECCCCC
Confidence 34568999999999 7899989999999999999999999999999999999997 788888888888877766543
No 216
>PLN02357 serine acetyltransferase
Probab=98.75 E-value=5.3e-08 Score=99.43 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=34.9
Q ss_pred eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 335 HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 335 ~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+++||++|.||++|.| .+++|+.. |......+++||++|.||.|+.|..+++||++++||++++|
T Consensus 246 giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV 311 (360)
T PLN02357 246 GVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVV 311 (360)
T ss_pred ceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEE
Confidence 3555666666655555 23333321 11111234666777777776666556666666666666644
No 217
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.74 E-value=2e-07 Score=95.96 Aligned_cols=198 Identities=10% Similarity=0.045 Sum_probs=123.1
Q ss_pred CCceEEEEEeCCCCCCCCcCCCCccccccC---CeehHHHHHHHHHhCC-----------CcEEEEEec-CChHHHHHHH
Q psy1482 15 DEVLQAVIVTDTFNRNFFPVPEPYCLLPLV---NKCLLEYTLEHLHLSG-----------IEEIIVFCT-SHVNQIRELV 79 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~---g~pli~~~l~~L~~~g-----------i~~i~vv~~-~~~~~i~~~l 79 (627)
+..+.+||||||.||||.- ..||+|+||+ |+|++++.++.+...+ .-.++|.++ +..+++++|+
T Consensus 13 ~~~va~viLaGG~GTRLg~-~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~ 91 (323)
T cd04193 13 EGKVAVLLLAGGQGTRLGF-DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFF 91 (323)
T ss_pred cCCEEEEEECCCcccccCC-CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHH
Confidence 3468899999999999953 7899999998 7999999999998742 124567777 5688899999
Q ss_pred Hhccc-ccCCeeEEEEeCC---------------------CCcchhhhhhcccccCCcc-------CCEEEEeCCeecc-
Q psy1482 80 KRKEK-SLVGTLITLIVSD---------------------GCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSN- 129 (627)
Q Consensus 80 ~~~~~-~~~~~~v~~i~~~---------------------~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~- 129 (627)
++..| +...-+|.++.|. .+.|.|+..+.|....+++ ..+.+.+.|.+..
T Consensus 92 ~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~ 171 (323)
T cd04193 92 KENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK 171 (323)
T ss_pred HhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence 87543 3222356655441 3467888887776555543 4688888898532
Q ss_pred ccHHHHHHHHHHHhcCCCCceEEEEe-eccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEE
Q psy1482 130 INLLSALKSFKKINSMDSGAVALVLY-KKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEI 208 (627)
Q Consensus 130 ~~l~~~l~~h~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~ 208 (627)
.---.++-.|... ++.+.+-+ .+..+..+.| +++.....-+|+.|.+.+.. ....+...+..
T Consensus 172 ~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~ekvG----~l~~~~g~~~vvEysel~~~------~~~~~~~~g~l-- 234 (323)
T cd04193 172 VADPVFIGFCISK-----GADVGAKVVRKRYPTEKVG----VVVLVDGKPQVVEYSEISDE------LAEKRDADGEL-- 234 (323)
T ss_pred ccCHHHhHHHHHc-----CCceEEEEEECCCCCCcee----EEEEECCeEEEEEeecCCHH------HHhccCcCCcE--
Confidence 2222344455543 57777644 4444555555 55443133456677775530 00011112222
Q ss_pred EecCCcceeeecCCchhhhhhc
Q psy1482 209 CAHLASTGIMICSPAVPPLFSD 230 (627)
Q Consensus 209 ~~~l~~~Giyi~s~~vl~~~~~ 230 (627)
..+.-++.+.+|+-+++..+.+
T Consensus 235 ~f~~~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 235 QYNAGNIANHFFSLDFLEKAAE 256 (323)
T ss_pred ecccchHhhheeCHHHHHHHHh
Confidence 3344555677788777765543
No 218
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.74 E-value=5.6e-08 Score=96.61 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=41.1
Q ss_pred cCeEEECCCeEECCCCEEcC--CcEECCCCEECCCceeeeeEECCCCEECCC---cEEeceEECCCCEeCCCcEE-eeee
Q psy1482 298 RNNIYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQLSHCIIGRNCTIGSN---VRLEKSYLFDNVKIEDNCEV-RLSV 371 (627)
Q Consensus 298 ~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~---~~I~~s~i~~~v~Ig~~~~i-~~~i 371 (627)
..++.|++++.||+++.|+. +++||++|.||++|.| +.+|+||.+ +...++.|+++|.||.||.| +++.
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~ 213 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIE 213 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCE
Confidence 34566666666666666653 3456666655555544 445555432 22234566666666655554 2333
Q ss_pred ecCCcEECCCc
Q psy1482 372 LSYNTGVGEHS 382 (627)
Q Consensus 372 i~~~~~Ig~~~ 382 (627)
||++|.||.|+
T Consensus 214 IG~~a~IGAgS 224 (273)
T PRK11132 214 VGRGAKIGAGS 224 (273)
T ss_pred ECCCCEECCCC
Confidence 33333333333
No 219
>PLN02739 serine acetyltransferase
Probab=98.73 E-value=4.3e-08 Score=99.17 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHhccC
Q psy1482 465 TSLFYTEVVDSLLRGYEEKL 484 (627)
Q Consensus 465 ~~~F~~ev~~~l~~~~~~~~ 484 (627)
+++|+..+.....+.+..+.
T Consensus 325 T~e~~~~Ia~ay~~lf~~g~ 344 (355)
T PLN02739 325 TREFFQNVAVAYRETIPNGS 344 (355)
T ss_pred hHHHHHHHHHHHHhhccCCC
Confidence 46788888877777776554
No 220
>PLN02739 serine acetyltransferase
Probab=98.72 E-value=5.2e-08 Score=98.61 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=6.5
Q ss_pred EEECCCeEECCCCEE
Q psy1482 301 IYLAEDVLIGKTSVL 315 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i 315 (627)
+.|++++.||+++.|
T Consensus 206 idI~p~A~IG~Gv~I 220 (355)
T PLN02739 206 IDIHPAARIGKGILL 220 (355)
T ss_pred cccCCCccccCceEE
Confidence 334444444444444
No 221
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.72 E-value=6.3e-08 Score=89.95 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=14.4
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
|.+++|..+++|+++|+||.+++|.++ +++++++
T Consensus 123 g~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~ 156 (162)
T TIGR01172 123 GAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATV 156 (162)
T ss_pred cCCCEEECCcEECCCCEECCCCEECCC--CCCCCEE
Confidence 333333344444444444444444443 4444443
No 222
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.72 E-value=1.1e-07 Score=81.05 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=45.1
Q ss_pred EEECCCeEECCCCEEcC--CcEECCCCEECCCceeeeeEECCCCEECCCcE---EeceEECCCCEeCCCcEEe-eeeecC
Q psy1482 301 IYLAEDVLIGKTSVLKQ--QVVIGEGSSIGENTQLSHCIIGRNCTIGSNVR---LEKSYLFDNVKIEDNCEVR-LSVLSY 374 (627)
Q Consensus 301 ~~i~~~~~i~~~~~i~~--~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~---I~~s~i~~~v~Ig~~~~i~-~~ii~~ 374 (627)
+.+++++.|++++.|.. .++||+++.||+++. |+.++.|+.++. +..++|++++.|+.++.+. ++.|++
T Consensus 3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 77 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGD 77 (101)
T ss_pred eEeCCCCEECCCEEECCCCeEEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECC
Confidence 44556666666665543 345555555555554 455566666654 4667777777777777664 244444
Q ss_pred CcEECCCcEEC
Q psy1482 375 NTGVGEHSKLL 385 (627)
Q Consensus 375 ~~~Ig~~~~i~ 385 (627)
+++|++++.|.
T Consensus 78 ~~~i~~~~~i~ 88 (101)
T cd03354 78 NVKIGANAVVT 88 (101)
T ss_pred CCEECCCCEEC
Confidence 44444444433
No 223
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.71 E-value=5.4e-08 Score=104.72 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=49.7
Q ss_pred eeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECC
Q psy1482 333 LSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404 (627)
Q Consensus 333 I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~ 404 (627)
+.+++||++|.|+ ++.|.+|+|+++|.|+.+|+|.+|+|+++|.||+++.|. +|+|+++++|++++.+.+
T Consensus 313 ~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV 382 (407)
T ss_pred EEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence 4567777777776 777777777777777777777777777777777777776 577777777776666654
No 224
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=98.70 E-value=7.1e-08 Score=90.02 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=84.7
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCC-hHHHHHHHHhcccccCCeeEEEE
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH-VNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
..+-|||||+|.++||. .||.|+|+.|+||+.++++.+.++++++++|++++. .+........ ..++++
T Consensus 4 ~~v~~VvLAAGrssRmG---~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~-------~~~~~v 73 (199)
T COG2068 4 STVAAVVLAAGRSSRMG---QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ-------LGVTVV 73 (199)
T ss_pred cceEEEEEcccccccCC---CcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc-------CCeEEE
Confidence 35679999999999997 699999999999999999999999999999999975 3333333332 446666
Q ss_pred eC-CCCcchhhhhhcccccCCc-cCCEEEEeCCe--eccccHHHHHHHHHHH
Q psy1482 95 VS-DGCYSFGDVMRDLDGKAVI-RNDFILVSGDV--VSNINLLSALKSFKKI 142 (627)
Q Consensus 95 ~~-~~~~~~gdalr~l~~~~~i-~~dfll~~gD~--i~~~~l~~~l~~h~~~ 142 (627)
.. +...|.+..++......-- +.-.+++.||+ +...++..+++.++.+
T Consensus 74 ~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 74 VNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred eCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 64 3445666655532211111 13488899998 4566788888876653
No 225
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.70 E-value=1.3e-07 Score=81.46 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=15.5
Q ss_pred CCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 374 YNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
..+.||++++|+.+++|..+++||+++.|++++.+
T Consensus 55 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 55 APIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV 89 (107)
T ss_pred CCEEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 34444444444444444444444444444444444
No 226
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.69 E-value=6.6e-08 Score=93.90 Aligned_cols=111 Identities=22% Similarity=0.310 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHh-CCCcEEEEEecC-ChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHL-SGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~-~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
+-|||+|||.|+||.. ..||++++++|+|+|.|+|+.+.. ..+++|+|+|.. +.+.+++.+.. .++.++.
T Consensus 1 V~aIilAaG~G~R~g~-~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-------~~v~iv~ 72 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS-GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-------KKVKIVE 72 (221)
T ss_dssp EEEEEEESS-STCCTS-SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-------TTEEEEE
T ss_pred CEEEEeCCccchhcCc-CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-------CCEEEec
Confidence 3589999999999986 689999999999999999999987 578999999985 56777777665 1245554
Q ss_pred --CCCCcchhhhhhcccccCCccCCEEEEeCCee----ccccHHHHHHHHHH
Q psy1482 96 --SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVV----SNINLLSALKSFKK 141 (627)
Q Consensus 96 --~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i----~~~~l~~~l~~h~~ 141 (627)
.....|...+|..+... .+++++ -|-. ..--+..+++.-+.
T Consensus 73 GG~tR~~SV~ngL~~l~~~----~d~VlI-HDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 73 GGATRQESVYNGLKALAED----CDIVLI-HDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp --SSHHHHHHHHHHCHHCT----SSEEEE-EETTSTT--HHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHcC----CCEEEE-EccccCCCCHHHHHHHHHHHHh
Confidence 23445666777654322 155555 3432 33345666665544
No 227
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.1e-07 Score=87.85 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.8
Q ss_pred EECCCCEeCCCcEE
Q psy1482 354 YLFDNVKIEDNCEV 367 (627)
Q Consensus 354 ~i~~~v~Ig~~~~i 367 (627)
.|+++|.||.|+.|
T Consensus 121 tIg~~V~IGagAkI 134 (194)
T COG1045 121 TIGNGVYIGAGAKI 134 (194)
T ss_pred ccCCCeEECCCCEE
Confidence 44445555554443
No 228
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.67 E-value=4.6e-07 Score=97.37 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=120.5
Q ss_pred CceEEEEEeCCCCCCCCcCCCCcccccc---CCeehHHHHHHHHHhC------------C-CcEEEEEec-CChHHHHHH
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPL---VNKCLLEYTLEHLHLS------------G-IEEIIVFCT-SHVNQIREL 78 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi---~g~pli~~~l~~L~~~------------g-i~~i~vv~~-~~~~~i~~~ 78 (627)
..+.+||||||.||||+. ..||+|+|| .|+|+++++++.+... + .-.++|+++ +..+.+++|
T Consensus 105 gkvavViLAGG~GTRLg~-~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLGS-DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred CCeEEEEECCCCcCcCCC-CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 358899999999999985 899999999 4899999999999764 1 235566666 578899999
Q ss_pred HHhccc-ccCCeeEEEEeCC----------------------CCcchhhhhhcccccCCcc-------CCEEEEeCCeec
Q psy1482 79 VKRKEK-SLVGTLITLIVSD----------------------GCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVS 128 (627)
Q Consensus 79 l~~~~~-~~~~~~v~~i~~~----------------------~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~ 128 (627)
+++..| +..+-+|.+..|. .+.|.|+..+.|....+++ ..+.+.+.|.+.
T Consensus 184 f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 263 (482)
T PTZ00339 184 LEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNIL 263 (482)
T ss_pred HHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccc
Confidence 986433 3222234443331 3357778777766555542 457888888874
Q ss_pred cccHH-HHHHHHHHHhcCCCC-ceEEEEeeccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcE
Q psy1482 129 NINLL-SALKSFKKINSMDSG-AVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKL 206 (627)
Q Consensus 129 ~~~l~-~~l~~h~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~ 206 (627)
..... .++-.+.... . .+++.++ +..+..+.| +++.....-.|+.|.|-+. .+.+.-. ...-
T Consensus 264 ~k~~DP~flG~~~~~~----~~~~~~kvv-k~~~~EkvG----~~~~~~g~~~vvEYsEi~~------~~~~~~~-~~~g 327 (482)
T PTZ00339 264 AKVLDPEFIGLASSFP----AHDVLNKCV-KREDDESVG----VFCLKDYEWQVVEYTEINE------RILNNDE-LLTG 327 (482)
T ss_pred ccccCHHHhHHHHHCC----chhheeeee-cCCCCCcee----EEEEeCCcccEEEEeccCh------hhhhccc-ccCC
Confidence 33322 2344444331 2 3444444 444445555 5554312226788888653 0111000 0012
Q ss_pred EEEecCCcceeeecCCchhhhh
Q psy1482 207 EICAHLASTGIMICSPAVPPLF 228 (627)
Q Consensus 207 ~~~~~l~~~Giyi~s~~vl~~~ 228 (627)
.......++..++|+-+++...
T Consensus 328 ~l~f~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 328 ELAFNYGNICSHIFSLDFLKKV 349 (482)
T ss_pred eecccccceEEEEEEHHHHHHH
Confidence 2345677888899998888754
No 229
>KOG1322|consensus
Probab=98.67 E-value=4.7e-08 Score=96.45 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=83.6
Q ss_pred eeecCeEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeec
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLS 373 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~ 373 (627)
..+.+++.+.+.+.+|++|.|+++++||++|+|++|+.|.+|.|-.+..++.++.|..++++.++.||.++.|. +|+||
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG 338 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLG 338 (371)
T ss_pred ccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEec
Confidence 55667888999999999999999999999999999999999999999999999999999999999999999884 77888
Q ss_pred CCcEECCCcEECCC
Q psy1482 374 YNTGVGEHSKLLNG 387 (627)
Q Consensus 374 ~~~~Ig~~~~i~~~ 387 (627)
+||.|.+.-.+..+
T Consensus 339 ~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 339 KNVIVADEDYVNEG 352 (371)
T ss_pred cceEEecccccccc
Confidence 88888777766644
No 230
>KOG4042|consensus
Probab=98.65 E-value=2.9e-08 Score=86.05 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=73.3
Q ss_pred eEEECCCeEECCCCEEcCCcEECCCCEECCCcee----eeeEECCCCEECCCcEEec--------------eEECCCCEe
Q psy1482 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL----SHCIIGRNCTIGSNVRLEK--------------SYLFDNVKI 361 (627)
Q Consensus 300 ~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I----~~s~Ig~~~~Ig~~~~I~~--------------s~i~~~v~I 361 (627)
.+.|.+++++-..+.|.+.+.|+++|.|.+.+++ ++.+||+|+.|.+.+.|.+ -+||.+-..
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3667777777777788899999999999999887 4789999999999988854 255555555
Q ss_pred CCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEEC
Q psy1482 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLS 403 (627)
Q Consensus 362 g~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~ 403 (627)
.-+|......+|++-+|+..+.+++||.+..+|.||+++.+.
T Consensus 88 eVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 88 EVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred EeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 555555545566666666666666666666666666655443
No 231
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.65 E-value=1.5e-07 Score=99.35 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
..+.+||||||.|+||. ..||+|+|++|+|||+|+++.+.. ++++|+|+++...+.+.+++.+ +.+..-.
T Consensus 4 ~~i~~VILAgG~s~Rmg--g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~-------~~~i~d~ 73 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN--GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG-------LPVYPDI 73 (366)
T ss_pred CCceEEEEcCCcccCCC--CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC-------CcEEecC
Confidence 35789999999999995 368999999999999999999975 5999999777655555444322 2221111
Q ss_pred CCCCcchhhhhhcccccCCcc-CCEEEEeCCee-ccc-cHHHHHHHHH
Q psy1482 96 SDGCYSFGDVMRDLDGKAVIR-NDFILVSGDVV-SNI-NLLSALKSFK 140 (627)
Q Consensus 96 ~~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i-~~~-~l~~~l~~h~ 140 (627)
.....|....++. +...++ +.++++.||+- ... -+..+++.++
T Consensus 74 ~~g~~G~~~si~~--gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~ 119 (366)
T PRK14489 74 LPGFQGPLSGILA--GLEHADSEYLFVVACDTPFLPENLVKRLSKALA 119 (366)
T ss_pred CCCCCChHHHHHH--HHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhh
Confidence 1222344444442 222234 34999999973 333 3455555433
No 232
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.64 E-value=1.6e-07 Score=93.05 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=76.3
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCCh--HHHHHHHHhcccccCCeeEEEEeC
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHV--NQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
|||||+|.++||. +|+|+|++|+|||+|+++.+..++ +.+|+|+++... +.+.+++... .+.++..
T Consensus 2 aiIlA~G~S~R~~----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~-------~v~~v~~ 70 (233)
T cd02518 2 AIIQARMGSTRLP----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL-------GVKVFRG 70 (233)
T ss_pred EEEeeCCCCCCCC----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc-------CCeEEEC
Confidence 7999999999994 599999999999999999999987 899999998654 6777776541 2344543
Q ss_pred CCCcchhhhhhcccccCCccCCEEEEeCCee--ccccHHHHHHHHHHH
Q psy1482 97 DGCYSFGDVMRDLDGKAVIRNDFILVSGDVV--SNINLLSALKSFKKI 142 (627)
Q Consensus 97 ~~~~~~gdalr~l~~~~~i~~dfll~~gD~i--~~~~l~~~l~~h~~~ 142 (627)
+...+.+..+..+... -.+.++++.||+- ..-.+..+++.++..
T Consensus 71 ~~~~~l~~~~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 71 SEEDVLGRYYQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred CchhHHHHHHHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 3322222222211111 1234888999983 345678888877653
No 233
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.63 E-value=2.3e-07 Score=89.66 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=72.2
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~ 96 (627)
.+.+||||||.|+||. .||+|+|++|+|||+|+++.|.. .+.+|+|+++. .+.+..+.. ..+.++..
T Consensus 7 ~~~~vILAgG~s~Rmg---~~K~ll~~~g~~ll~~~i~~l~~-~~~~ivvv~~~-~~~~~~~~~--------~~~~~i~~ 73 (200)
T PRK02726 7 NLVALILAGGKSSRMG---QDKALLPWQGVPLLQRVARIAAA-CADEVYIITPW-PERYQSLLP--------PGCHWLRE 73 (200)
T ss_pred CceEEEEcCCCcccCC---CCceeeEECCEeHHHHHHHHHHh-hCCEEEEECCC-HHHHHhhcc--------CCCeEecC
Confidence 5789999999999996 48999999999999999999975 47889888763 333332221 12444532
Q ss_pred -CCCcchhhhhhcccccCCcc-CCEEEEeCCee--ccccHHHHHHHH
Q psy1482 97 -DGCYSFGDVMRDLDGKAVIR-NDFILVSGDVV--SNINLLSALKSF 139 (627)
Q Consensus 97 -~~~~~~gdalr~l~~~~~i~-~dfll~~gD~i--~~~~l~~~l~~h 139 (627)
....|...+++. +...+. +.++++.||+- ..-.+..+++.+
T Consensus 74 ~~~~~G~~~si~~--~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 118 (200)
T PRK02726 74 PPPSQGPLVAFAQ--GLPQIKTEWVLLLACDLPRLTVDVLQEWLQQL 118 (200)
T ss_pred CCCCCChHHHHHH--HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHh
Confidence 222455555542 222233 56999999983 333455566554
No 234
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.51 E-value=7e-07 Score=81.13 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=15.3
Q ss_pred eeeecCCcEECCCcEECCCCEECCCcEECCCcE
Q psy1482 369 LSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC 401 (627)
Q Consensus 369 ~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~ 401 (627)
+++||++|+||.++.|.+++.||++++||++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~ 105 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAV 105 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCE
Confidence 444444444444444444444444444444443
No 235
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.48 E-value=4.9e-07 Score=83.55 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=16.1
Q ss_pred eeecCCcEECCCcEECCCCEECCCcEECCCcE
Q psy1482 370 SVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTC 401 (627)
Q Consensus 370 ~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~ 401 (627)
-.||+||.||.|++|-.+-.||+|+.||++++
T Consensus 120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sV 151 (194)
T COG1045 120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSV 151 (194)
T ss_pred CccCCCeEECCCCEEEcceEECCCCEECCCce
Confidence 34555555555555443444555555555543
No 236
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.45 E-value=2.9e-06 Score=82.10 Aligned_cols=86 Identities=26% Similarity=0.284 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhC-CCcEEEEEecC-ChHHHHHHHHhcccccCCeeEEEE
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLS-GIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~-gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
.+-|||+|+|+|+||.. ..||.+++++|+|||+|+|+.+... .+++|+|+++. .-..+.++... . ....+.++
T Consensus 4 ~~~~vilAaG~G~R~~~-~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~---~~~~v~~v 78 (230)
T COG1211 4 MVSAVILAAGFGSRMGN-PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL-S---ADKRVEVV 78 (230)
T ss_pred eEEEEEEcCccccccCC-CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh-c---cCCeEEEe
Confidence 56799999999999998 8999999999999999999999775 57999999986 44555555531 1 22456666
Q ss_pred eC--CCCcchhhhhh
Q psy1482 95 VS--DGCYSFGDVMR 107 (627)
Q Consensus 95 ~~--~~~~~~gdalr 107 (627)
.. ....|.-.+|.
T Consensus 79 ~GG~~R~~SV~~gL~ 93 (230)
T COG1211 79 KGGATRQESVYNGLQ 93 (230)
T ss_pred cCCccHHHHHHHHHH
Confidence 43 23334444444
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.39 E-value=2.2e-06 Score=77.92 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=21.2
Q ss_pred cCCcEECCCcEECCCCEECCCcEECCCcEECCCcccC
Q psy1482 373 SYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409 (627)
Q Consensus 373 ~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~ 409 (627)
..++.||++++|+.+|+|..+++||++++|+++++|.
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 3455555555555555555555555555555555554
No 238
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.38 E-value=2.9e-05 Score=82.89 Aligned_cols=190 Identities=10% Similarity=0.048 Sum_probs=115.9
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccC-CeehHHHHHHHHHh----CCCc-EEEEEecC-ChHHHHHHHHhcccccCCe
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLV-NKCLLEYTLEHLHL----SGIE-EIIVFCTS-HVNQIRELVKRKEKSLVGT 89 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~-g~pli~~~l~~L~~----~gi~-~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 89 (627)
.+-+|+||||.||||.- ..||.++|+. |+++++.+++.+.. .|+. ..+|.++. ..+...+|+++..+ .+.
T Consensus 79 k~avlkLnGGlGTrmG~-~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~--~~~ 155 (469)
T PLN02474 79 KLVVLKLNGGLGTTMGC-TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN--SNI 155 (469)
T ss_pred cEEEEEecCCcccccCC-CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC--Ccc
Confidence 45689999999999986 7899999995 68999999888754 3432 23556664 45778899987544 223
Q ss_pred eEEEEeCC------------------------CCcchhhhhhcccccCCcc-------CCEEEEeCCeeccccHHHHHHH
Q psy1482 90 LITLIVSD------------------------GCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSNINLLSALKS 138 (627)
Q Consensus 90 ~v~~i~~~------------------------~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~~~l~~~l~~ 138 (627)
+|.++.|. .+.|-|+..+.|....+++ +.+.+.+.|.+...-=-.++.+
T Consensus 156 ~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~ 235 (469)
T PLN02474 156 EIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNH 235 (469)
T ss_pred ceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHH
Confidence 44444331 2356677776665555542 4688889999754322234555
Q ss_pred HHHHhcCCCCceEEEEeec-cCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCccee
Q psy1482 139 FKKINSMDSGAVALVLYKK-KGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGI 217 (627)
Q Consensus 139 h~~~~~~~~~~~~T~~~~~-~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 217 (627)
|... ++.++|=+.+ ..+..+.| +++.-...-+|+.|.+.|+ +...+.. -.....+.+|+.
T Consensus 236 ~~~~-----~~e~~~ev~~Kt~~d~kgG----~l~~~dgk~~lvEysqvp~---------e~~~~f~-~~~kf~~fNtnn 296 (469)
T PLN02474 236 LIQN-----KNEYCMEVTPKTLADVKGG----TLISYEGKVQLLEIAQVPD---------EHVNEFK-SIEKFKIFNTNN 296 (469)
T ss_pred HHhc-----CCceEEEEeecCCCCCCcc----EEEEECCEEEEEEEecCCH---------HHHHhhc-ccccceeeeeee
Confidence 5554 5666665443 33333334 4443212335777877653 2111100 112556778888
Q ss_pred eecCCchhhhh
Q psy1482 218 MICSPAVPPLF 228 (627)
Q Consensus 218 yi~s~~vl~~~ 228 (627)
+.++-++++.+
T Consensus 297 ~w~~L~~l~~~ 307 (469)
T PLN02474 297 LWVNLKAIKRL 307 (469)
T ss_pred EEEEHHHHHHH
Confidence 88887777654
No 239
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.35 E-value=1.5e-06 Score=90.36 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCccccccCCceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhccccc
Q psy1482 7 KAKSEIQKDEVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSL 86 (627)
Q Consensus 7 ~~~~~~~~~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~ 86 (627)
+||+++ -+..+-+||||||.|+||. .||.|+|+.|+||++|+++.|.. .+.+|+|+++... .. +. .+
T Consensus 151 gg~s~~-~~~~i~~IILAGGkSsRMG---~dKaLL~~~GkpLl~~~ie~l~~-~~~~ViVv~~~~~--~~-~~---~~-- 217 (346)
T PRK14500 151 GGKADL-SQTPLYGLVLTGGKSRRMG---KDKALLNYQGQPHAQYLYDLLAK-YCEQVFLSARPSQ--WQ-GT---PL-- 217 (346)
T ss_pred CCcCCC-CCCCceEEEEeccccccCC---CCcccceeCCccHHHHHHHHHHh-hCCEEEEEeCchH--hh-hc---cc--
Confidence 557643 3457889999999999996 69999999999999999988865 4889988886421 11 10 11
Q ss_pred CCeeEEEEe-CCCCcchhhhhhcccccCCccCCEEEEeCCee-ccc-cHHHHHHHH
Q psy1482 87 VGTLITLIV-SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVV-SNI-NLLSALKSF 139 (627)
Q Consensus 87 ~~~~v~~i~-~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i-~~~-~l~~~l~~h 139 (627)
..+.++. .....|...+++..... .-...++++.||+- .+. .+..+++.+
T Consensus 218 --~~v~~I~D~~~~~GPlagI~aaL~~-~~~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 --ENLPTLPDRGESVGPISGILTALQS-YPGVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --cCCeEEeCCCCCCChHHHHHHHHHh-CCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 1123332 22223555555422111 11357899999984 333 345555543
No 240
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.34 E-value=2.4e-06 Score=81.78 Aligned_cols=84 Identities=25% Similarity=0.365 Sum_probs=45.6
Q ss_pred CCcEECCCCEECCCcee---eeeEECCCCEECCCcEE-eceEECCCCEeCCCc--EEeeeeecCCcEECCCcEECCCCEE
Q psy1482 317 QQVVIGEGSSIGENTQL---SHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNC--EVRLSVLSYNTGVGEHSKLLNGCLL 390 (627)
Q Consensus 317 ~~~~ig~~~~Ig~~~~I---~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~--~i~~~ii~~~~~Ig~~~~i~~~~ii 390 (627)
.+..+|.+|.++.++.+ .+.+||+++.|+.+|+| ..+..++...-..+. ....++||++|+||.+++|.+|++|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 45677777777777775 35678888888888877 333333333322221 1123445555555554444444444
Q ss_pred CCCcEECCCc
Q psy1482 391 GTGVLIGNKT 400 (627)
Q Consensus 391 ~~~~~ig~~~ 400 (627)
|++++||+++
T Consensus 146 G~gavigags 155 (190)
T COG0110 146 GEGAVIGAGS 155 (190)
T ss_pred CCCcEEeeCC
Confidence 4444444443
No 241
>KOG4042|consensus
Probab=98.29 E-value=8.8e-07 Score=77.02 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=67.7
Q ss_pred eeecCeEEECCCeEECCCCEEc---CCcEECCCCEECCCceeee--------------eEECCCCEECCCcEEeceEECC
Q psy1482 295 KYRRNNIYLAEDVLIGKTSVLK---QQVVIGEGSSIGENTQLSH--------------CIIGRNCTIGSNVRLEKSYLFD 357 (627)
Q Consensus 295 ~~~~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~Ig~~~~I~~--------------s~Ig~~~~Ig~~~~I~~s~i~~ 357 (627)
+.+++.+.++++++++|.+++. ++.+||+|+.|.+.++|.+ .+||.+....-+|+...-.+|+
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd 100 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD 100 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence 3567888899999999998884 6789999999999998853 5778877777777666656666
Q ss_pred CCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEE
Q psy1482 358 NVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCL 402 (627)
Q Consensus 358 ~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v 402 (627)
+-.|+.. +.+|+||.+.+||.+|.+|.|-..-.+.+++.+
T Consensus 101 ~NViesk-----ayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 101 RNVIESK-----AYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred cceEeee-----eEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 5555433 334555444444444444444444444444433
No 242
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.29 E-value=2e-06 Score=81.91 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEe
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~ 95 (627)
..|.+||||||.++|| .+|+|++++|+|||+|+++.|....- .++|......++ |... .+.++.
T Consensus 3 ~~~~~vILAGG~srRm----~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~--------g~~vv~ 66 (192)
T COG0746 3 TPMTGVILAGGKSRRM----RDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF--------GLPVVP 66 (192)
T ss_pred CCceEEEecCCccccc----cccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc--------CCceee
Confidence 4689999999999999 48999999999999999999987765 555555544342 2221 133332
Q ss_pred CCC-----CcchhhhhhcccccCCccCCEEEEeCCee-ccccHH
Q psy1482 96 SDG-----CYSFGDVMRDLDGKAVIRNDFILVSGDVV-SNINLL 133 (627)
Q Consensus 96 ~~~-----~~~~gdalr~l~~~~~i~~dfll~~gD~i-~~~~l~ 133 (627)
... ..|.-.||+.+ -.+.+++++||+- ...++-
T Consensus 67 D~~~~~GPL~Gi~~al~~~-----~~~~~~v~~~D~P~i~~~lv 105 (192)
T COG0746 67 DELPGFGPLAGILAALRHF-----GTEWVLVLPCDMPFIPPELV 105 (192)
T ss_pred cCCCCCCCHHHHHHHHHhC-----CCCeEEEEecCCCCCCHHHH
Confidence 211 12333344321 1457999999984 344443
No 243
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.11 E-value=1e-05 Score=92.31 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=40.3
Q ss_pred eeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCccc
Q psy1482 335 HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 335 ~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
...||+||.|+++|.|.+..+..+. ..++..+||+||.||.+++|.+|++||++++|++++.+..|..|
T Consensus 131 li~IG~~~~I~~~v~l~~~~~~~~~-----l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~~v 199 (695)
T TIGR02353 131 LLTIGAGTIVRKEVMLLGYRAERGR-----LHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSI 199 (695)
T ss_pred ceEECCCCEECCCCEEEcccCCCCc-----eeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCccc
Confidence 4567777777777776443322211 12234466666666666666666666666666666665554433
No 244
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.11 E-value=1.1e-05 Score=85.37 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=45.2
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCCcEEEEEecCC
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi~~i~vv~~~~ 71 (627)
..+.+||||||.|+||. .||+|+|++|+|||+|+++.+.. .+.+|+|+++..
T Consensus 173 ~~i~~iILAGG~SsRmG---~~K~ll~~~Gk~ll~~~l~~l~~-~~~~vvV~~~~~ 224 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG---SDKALLSYHESNQLVHTAALLRP-HCQEVFISCRAE 224 (369)
T ss_pred CCceEEEEcCCccccCC---CCcEEEEECCccHHHHHHHHHHh-hCCEEEEEeCCc
Confidence 45689999999999996 59999999999999999999975 478888877643
No 245
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.08 E-value=4.5e-06 Score=80.33 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=45.9
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccCC-eehHHHHHHHHHhCCCcEEEEEecC
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLVN-KCLLEYTLEHLHLSGIEEIIVFCTS 70 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g-~pli~~~l~~L~~~gi~~i~vv~~~ 70 (627)
..+.+||||||.++||. .||+|+|++| +|+|+|+++.|... +.+|+|++++
T Consensus 7 ~~i~~vILAgG~s~RmG---~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG---ENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred cCceEEEECCcccccCC---CCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 35789999999999996 5999999999 99999999999876 8999988874
No 246
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.08 E-value=1.3e-05 Score=91.49 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=32.7
Q ss_pred eEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCC
Q psy1482 336 CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGV 405 (627)
Q Consensus 336 s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~ 405 (627)
+.||++|.|+++|.|..-...+++.. +.++.||++|.||.+++|.+|+.||+++.||+++.+..|
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~-----~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g 681 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMK-----SDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKG 681 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccc-----cCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC
Confidence 46777777777777643222222221 233445555555555555445555555555555444443
No 247
>KOG4750|consensus
Probab=97.84 E-value=4.5e-05 Score=71.45 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=32.5
Q ss_pred ECCCCEECCCceee---eeEECCCCEECCCcEE-eceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEE
Q psy1482 321 IGEGSSIGENTQLS---HCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLI 396 (627)
Q Consensus 321 ig~~~~Ig~~~~I~---~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~i 396 (627)
|.+.++||+|-.+. +.+||+-+.||++|.| ++..++.. |.+|--++-.||+||.||.|+.|-.|..||.|++|
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggt---gk~~gdrhP~Igd~vliGaGvtILgnV~IGegavI 227 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGT---GKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVI 227 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceeeecceeeccc---cccccccCCcccCCeEEccccEEeCCeeECCCcEE
Confidence 44444455444442 4555555555555533 22222110 11111123345555555555544444444444444
Q ss_pred CCCc
Q psy1482 397 GNKT 400 (627)
Q Consensus 397 g~~~ 400 (627)
++|+
T Consensus 228 aAGs 231 (269)
T KOG4750|consen 228 AAGS 231 (269)
T ss_pred eccc
Confidence 4433
No 248
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.78 E-value=0.00012 Score=70.01 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=20.8
Q ss_pred CcEECCCcEECCCCEECCCcEECCCcEECCCcccCC
Q psy1482 375 NTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSA 410 (627)
Q Consensus 375 ~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~~v~~ 410 (627)
.++||++++|+.+++|.++++||++++|+++++|.+
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 355555555555555555555555555555555554
No 249
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.78 E-value=0.00038 Score=70.64 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=115.9
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccC-CeehHHHHHHHHHhC----CC-cEEEEEecC-ChHHHHHHHHhcccccCCe
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLV-NKCLLEYTLEHLHLS----GI-EEIIVFCTS-HVNQIRELVKRKEKSLVGT 89 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~-g~pli~~~l~~L~~~----gi-~~i~vv~~~-~~~~i~~~l~~~~~~~~~~ 89 (627)
.+-+|+||||.||||.- +.||.|+||. |++++++.++.+... |+ =..+|.++. ..+...+|+++..+ .+.
T Consensus 3 kvavl~LaGG~GTRLG~-~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~--~~~ 79 (300)
T cd00897 3 KLVVLKLNGGLGTSMGC-TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG--VNV 79 (300)
T ss_pred cEEEEEecCCcccccCC-CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC--Ccc
Confidence 35689999999999975 7899999996 679999999998642 32 234666665 46778899987543 122
Q ss_pred eEEEEeC------------------------CCCcchhhhhhcccccCCcc-------CCEEEEeCCeeccccHHHHHHH
Q psy1482 90 LITLIVS------------------------DGCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSNINLLSALKS 138 (627)
Q Consensus 90 ~v~~i~~------------------------~~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~~~l~~~l~~ 138 (627)
.|.+..| -.+.|-|+..+.+....+++ +.+.+.+.|.+...-=-.++-.
T Consensus 80 ~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~ 159 (300)
T cd00897 80 DIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNH 159 (300)
T ss_pred CeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHH
Confidence 2333322 13456777777665555552 5688899999754322234555
Q ss_pred HHHHhcCCCCceEEEE-eeccCCCCCCCCcceEEEEECCCCeEEEeeCCCCCCCccccchhhhccCCcEEEEecCCccee
Q psy1482 139 FKKINSMDSGAVALVL-YKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIPMENILLYSKLEICAHLASTGI 217 (627)
Q Consensus 139 h~~~~~~~~~~~~T~~-~~~~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 217 (627)
|... ++.+++= +.+..+..+.| +++.....=+|+.|.+.|+ +...+.. -.....+.+++.
T Consensus 160 ~~~~-----~~~~~~evv~Kt~~dek~G----~l~~~~g~~~vvEyse~p~---------e~~~~~~-~~~~~~~~nt~n 220 (300)
T cd00897 160 MVDN-----KAEYIMEVTDKTRADVKGG----TLIQYEGKLRLLEIAQVPK---------EHVDEFK-SIKKFKIFNTNN 220 (300)
T ss_pred HHhc-----CCceEEEEeecCCCCCccc----EEEEECCEEEEEEeccCCH---------HHHHhhc-CcccceEEEEeE
Confidence 5554 6777774 34444444555 5554312334777777653 2111100 011345667777
Q ss_pred eecCCchhhhh
Q psy1482 218 MICSPAVPPLF 228 (627)
Q Consensus 218 yi~s~~vl~~~ 228 (627)
+.++-++++.+
T Consensus 221 ~~~~l~~L~~~ 231 (300)
T cd00897 221 LWVNLKAVKRV 231 (300)
T ss_pred EEEEHHHHHHH
Confidence 77777766644
No 250
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.73 E-value=9.8e-05 Score=69.52 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=46.1
Q ss_pred eEEECCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEE-eceEECCCCEeCCCcEEe-eeeecCCcE
Q psy1482 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLFDNVKIEDNCEVR-LSVLSYNTG 377 (627)
Q Consensus 300 ~~~i~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I-~~s~i~~~v~Ig~~~~i~-~~ii~~~~~ 377 (627)
.+....++.||+++.+. ..++|+...+|+++.|.+.+++.+|+|+..|.+ +|.++..++.||+.+.|. .-++...-.
T Consensus 16 ~ivv~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLd 94 (277)
T COG4801 16 IIVVKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLD 94 (277)
T ss_pred eEEEeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccc
Confidence 34444555555555554 235555566666666655555566666666655 455555555555555553 333444445
Q ss_pred ECCCcEEC
Q psy1482 378 VGEHSKLL 385 (627)
Q Consensus 378 Ig~~~~i~ 385 (627)
||.++.|.
T Consensus 95 ig~dV~Ie 102 (277)
T COG4801 95 IGADVIIE 102 (277)
T ss_pred cccceEEe
Confidence 55555555
No 251
>KOG4750|consensus
Probab=97.73 E-value=5.5e-05 Score=70.87 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=30.1
Q ss_pred eEECCCCEECCCcEEece--EECC-CCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCCcEECCCcEECCCc
Q psy1482 336 CIIGRNCTIGSNVRLEKS--YLFD-NVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVK 406 (627)
Q Consensus 336 s~Ig~~~~Ig~~~~I~~s--~i~~-~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~~~~v~~~~ 406 (627)
.+||++|.|..++.+++. -.++ .-.||+|+. ||.+++|-.|+.||+|++|+.|++|-.+ |++.+
T Consensus 175 Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vl-----iGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~ 241 (269)
T KOG4750|consen 175 AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVL-----IGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNT 241 (269)
T ss_pred eEeccceeeecceeeccccccccccCCcccCCeE-----EccccEEeCCeeECCCcEEeccceEEec--cCCCc
Confidence 345555555555555321 1111 124444444 3444444455555555555555555554 44444
No 252
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00046 Score=64.83 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=121.4
Q ss_pred EEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCC-cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC-
Q psy1482 19 QAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGI-EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS- 96 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~- 96 (627)
-|||+|-|..+|.. -|-+-+++|+|||.|+|+.+..+++ ++|+|-+ ..+.|.+.-++ ++ .++-+...
T Consensus 5 iAiIpAR~gSKgI~----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~--yg---ak~~~~Rp~ 73 (228)
T COG1083 5 IAIIPARGGSKGIK----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK--YG---AKVFLKRPK 73 (228)
T ss_pred EEEEeccCCCCcCC----ccchHHhCCcchHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH--hC---ccccccCCh
Confidence 48999999888864 5899999999999999999999885 5554433 45666666554 22 23322221
Q ss_pred ---CCCcchhhhhhcccccCCccCC-EEEEeCC--eeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceE
Q psy1482 97 ---DGCYSFGDVMRDLDGKAVIRND-FILVSGD--VVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLI 170 (627)
Q Consensus 97 ---~~~~~~gdalr~l~~~~~i~~d-fll~~gD--~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~v 170 (627)
.+..++-+++.+......+..+ .+++.+- +....++...++.+.... .+++++.+=.+.. .++ -
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~---~~sl~sa~e~e~~---p~k----~ 143 (228)
T COG1083 74 ELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ---YDSLFSAVECEHH---PYK----A 143 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCC---CcceEEEeecccc---hHH----H
Confidence 1222233333321222223344 6666544 356788999988887652 3444444322221 122 1
Q ss_pred EEEECCCCeEEEeeCCCC-CCCccccchhhhccCCcEEEEecCCcceeeecCCchhhhhhcCCCCCchhhhhcccccChh
Q psy1482 171 VAYECDSKKLLMHQTPQD-NQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLINEE 249 (627)
Q Consensus 171 v~~d~~~~~vl~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~fd~~~~~dfi~~il~~~~ 249 (627)
+.. ++|.+..+.+.++ ..+.=++| .....+..+|+++.+.|.. + .-
T Consensus 144 f~~--~~~~~~~~~~~~~~~~rrQ~Lp------------k~Y~~NgaiYi~~~~~l~e---~----------------~~ 190 (228)
T COG1083 144 FSL--NNGEVKPVNEDPDFETRRQDLP------------KAYRENGAIYINKKDALLE---N----------------DC 190 (228)
T ss_pred HHh--cCCceeecccCCccccccccch------------hhhhhcCcEEEehHHHHhh---c----------------Cc
Confidence 222 3477777766654 12222233 2334567788888776321 1 11
Q ss_pred cccCeeEEEEcCCCceeeecCChhhHHHHhHHHh
Q psy1482 250 ILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV 283 (627)
Q Consensus 250 ~~g~~I~~~~~~~~~~~~~V~s~~~y~~a~~dil 283 (627)
+.+.....|.++.. -..||++..++..+...+.
T Consensus 191 ~f~~~~~~y~m~~~-~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 191 FFIPNTILYEMPED-ESIDIDTELDLEIAENLIF 223 (228)
T ss_pred eecCCceEEEcCcc-cccccccHHhHHHHHHHhh
Confidence 22334556777755 7789999999887766543
No 253
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.69 E-value=0.00055 Score=73.76 Aligned_cols=196 Identities=9% Similarity=0.041 Sum_probs=122.3
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccC---CeehHHHHHHHHHhC--------------CC-cEEEEEecC-ChHHHH
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLV---NKCLLEYTLEHLHLS--------------GI-EEIIVFCTS-HVNQIR 76 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~---g~pli~~~l~~L~~~--------------gi-~~i~vv~~~-~~~~i~ 76 (627)
..+-+|+||||.||||.- ..||.|+||+ ++++++...+.+... ++ =..+|.++. ..+..+
T Consensus 115 gkvavvlLAGGqGTRLG~-~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~ 193 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGS-SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATR 193 (493)
T ss_pred CCEEEEEeCCCcccccCC-CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHH
Confidence 345588889999999986 8899999885 899999999987431 11 134777775 568888
Q ss_pred HHHHhcc-cccCCeeEEEEeC---------------------CCCcchhhhhhcccccCCcc-------CCEEEEeCCee
Q psy1482 77 ELVKRKE-KSLVGTLITLIVS---------------------DGCYSFGDVMRDLDGKAVIR-------NDFILVSGDVV 127 (627)
Q Consensus 77 ~~l~~~~-~~~~~~~v~~i~~---------------------~~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i 127 (627)
+|+++.. ++...-+|.++.| ..+.|.|+..+.|....+++ ..+.+.+.|.+
T Consensus 194 ~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 273 (493)
T PLN02435 194 KFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNA 273 (493)
T ss_pred HHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccc
Confidence 9998744 3322334555543 24568888888776666653 35777788885
Q ss_pred cc-ccHHHHHHHHHHHhcCCCCceEEEE-eeccCCCCCCCCcceEEEEECCCCe--EEEeeCCCCCCCccccchhhhcc-
Q psy1482 128 SN-INLLSALKSFKKINSMDSGAVALVL-YKKKGQSKSSWKEDLIVAYECDSKK--LLMHQTPQDNQKKVNIPMENILL- 202 (627)
Q Consensus 128 ~~-~~l~~~l~~h~~~~~~~~~~~~T~~-~~~~~~~~~~~~~~~vv~~d~~~~~--vl~~~e~~~~~~~~~~~~~~~~~- 202 (627)
.. +---.++-.+... ++.+.+- +.+..+..+.| +++....+|+ |+.|.+.+. ++-..
T Consensus 274 L~~~~DP~flG~~~~~-----~~d~~~kVv~K~~~~EkvG----~i~~~~~~g~~~vvEYsEl~~---------~~~~~~ 335 (493)
T PLN02435 274 LVRVADPTFLGYFIDK-----GVASAAKVVRKAYPQEKVG----VFVRRGKGGPLTVVEYSELDQ---------AMASAI 335 (493)
T ss_pred cccccCHHHHHHHHhc-----CCceEEEeeecCCCCCcee----EEEEecCCCCEEEEEeccCCH---------HHHhcc
Confidence 33 2223344444443 5666654 34444444545 6654213444 777777542 11110
Q ss_pred CC-cEEEEecCCcceeeecCCchhhhhhc
Q psy1482 203 YS-KLEICAHLASTGIMICSPAVPPLFSD 230 (627)
Q Consensus 203 ~~-~~~~~~~l~~~Giyi~s~~vl~~~~~ 230 (627)
.+ +-.+..+..+.++++||-++++.+.+
T Consensus 336 ~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 336 NQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred CccccccccchhhHHHhhccHHHHHHHHH
Confidence 11 12345677888999999999987643
No 254
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.67 E-value=0.00026 Score=66.74 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=68.5
Q ss_pred EECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEe-eeeecCCcEECCCcEECCCCEECCCcEECC
Q psy1482 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-LSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398 (627)
Q Consensus 320 ~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~ii~~~~~ig~ 398 (627)
+....+.||+++.+.-.++|+.+.+|+++.|.+.+++.++.|+.+|.+. +.+++.++.||..+.|+...++.....||+
T Consensus 18 vv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~ 97 (277)
T COG4801 18 VVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA 97 (277)
T ss_pred EEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence 3444455566666667789999999999999999999999999999994 777788888888888887777777777777
Q ss_pred CcEECCCc
Q psy1482 399 KTCLSGVK 406 (627)
Q Consensus 399 ~~~v~~~~ 406 (627)
++.|.+|-
T Consensus 98 dV~Ieggf 105 (277)
T COG4801 98 DVIIEGGF 105 (277)
T ss_pred ceEEecCe
Confidence 77666654
No 255
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.55 E-value=0.00055 Score=66.86 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=72.1
Q ss_pred EEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCC
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDG 98 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~ 98 (627)
|||.|-+..+|+- -|.|.|++|+|||+|+++.+..++ +++|+|.+. .+.+.+.+.+ ++ ..+.+.....
T Consensus 2 aiIpAR~gS~rlp----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~--~g---~~v~~~~~~~ 70 (217)
T PF02348_consen 2 AIIPARGGSKRLP----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE--YG---AKVIFRRGSL 70 (217)
T ss_dssp EEEEE-SSSSSST----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH--TT---SEEEE--TTS
T ss_pred EEEecCCCCCCCC----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH--cC---CeeEEcChhh
Confidence 7999998899985 499999999999999999998875 789877776 4556666665 32 4554443333
Q ss_pred Ccchh---hhhhcccccCCccCCEEEEeCCeec--cccHHHHHHHHHHH
Q psy1482 99 CYSFG---DVMRDLDGKAVIRNDFILVSGDVVS--NINLLSALKSFKKI 142 (627)
Q Consensus 99 ~~~~g---dalr~l~~~~~i~~dfll~~gD~i~--~~~l~~~l~~h~~~ 142 (627)
..++. +++..+.. .-...++.+.||... ...+..+++.+++.
T Consensus 71 ~~~~~r~~~~~~~~~~--~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~ 117 (217)
T PF02348_consen 71 ADDTDRFIEAIKHFLA--DDEDIVVRLQGDSPLLDPTSIDRAIEDIREA 117 (217)
T ss_dssp SSHHHHHHHHHHHHTC--STTSEEEEESTTETT--HHHHHHHHHHHHHS
T ss_pred cCCcccHHHHHHHhhh--hHHhhccccCCeeeECCHHHHHHHHHHHhcC
Confidence 33333 33432211 111246678888843 34678888887775
No 256
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.47 E-value=0.00011 Score=48.56 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=8.7
Q ss_pred ECCCCEECCCceeeeeEECCCCEECCCc
Q psy1482 321 IGEGSSIGENTQLSHCIIGRNCTIGSNV 348 (627)
Q Consensus 321 ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~ 348 (627)
||++|.||.+|.| +..||++|.|++|+
T Consensus 4 IG~~~~ig~~~~i-gi~igd~~~i~~g~ 30 (34)
T PF14602_consen 4 IGDNCFIGANSTI-GITIGDGVIIGAGV 30 (34)
T ss_dssp E-TTEEE-TT-EE-TSEE-TTEEE-TTE
T ss_pred ECCCEEECccccc-CCEEcCCCEECCCC
Confidence 3344444444333 23344444444443
No 257
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.24 E-value=0.00036 Score=46.08 Aligned_cols=13 Identities=54% Similarity=0.951 Sum_probs=4.1
Q ss_pred EECCCCEECCCcE
Q psy1482 337 IIGRNCTIGSNVR 349 (627)
Q Consensus 337 ~Ig~~~~Ig~~~~ 349 (627)
.||++|.||.+|.
T Consensus 3 ~IG~~~~ig~~~~ 15 (34)
T PF14602_consen 3 TIGDNCFIGANST 15 (34)
T ss_dssp EE-TTEEE-TT-E
T ss_pred EECCCEEECcccc
Confidence 3444444444443
No 258
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.19 E-value=0.00031 Score=47.14 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=2.1
Q ss_pred CCCEEC
Q psy1482 340 RNCTIG 345 (627)
Q Consensus 340 ~~~~Ig 345 (627)
++|.|+
T Consensus 24 ~~~~I~ 29 (36)
T PF00132_consen 24 DNCVIG 29 (36)
T ss_dssp TTEEEE
T ss_pred CCCEEc
Confidence 333333
No 259
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.17 E-value=0.0026 Score=64.86 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=94.8
Q ss_pred EEEEeCCCCCCCCcCCCCcccccc---CCeehHHHHHHHHHhCC---------CcEEEEEecC-ChHHHHHHHHhccc-c
Q psy1482 20 AVIVTDTFNRNFFPVPEPYCLLPL---VNKCLLEYTLEHLHLSG---------IEEIIVFCTS-HVNQIRELVKRKEK-S 85 (627)
Q Consensus 20 aVIlA~g~g~R~~Pl~~PK~Llpi---~g~pli~~~l~~L~~~g---------i~~i~vv~~~-~~~~i~~~l~~~~~-~ 85 (627)
+|+||||.||||.- +.||.++|| .|++++++.++.+.... .-..+|.++. ..+..++++++..| +
T Consensus 3 ~vllaGG~GTRLG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG 81 (315)
T cd06424 3 FVLVAGGLGERLGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG 81 (315)
T ss_pred EEEecCCCccccCC-CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence 68999999999985 899999999 48999999999986532 1345777775 57888999987554 2
Q ss_pred cCCeeEEEEeC------------------------CCCcchhhhhhcccccCCcc-------CCEEEEeCCeeccccH-H
Q psy1482 86 LVGTLITLIVS------------------------DGCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSNINL-L 133 (627)
Q Consensus 86 ~~~~~v~~i~~------------------------~~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~~~l-~ 133 (627)
..+-+|.+..| ..+.|-|+..+.+....+++ ..+.+..-|.+..... -
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~adP 161 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIP 161 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhccCh
Confidence 22223433322 13467788777766665542 3455555555432222 2
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEE-ECCCCe--E--EEeeCCC
Q psy1482 134 SALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAY-ECDSKK--L--LMHQTPQ 187 (627)
Q Consensus 134 ~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~-d~~~~~--v--l~~~e~~ 187 (627)
.++-.+..+ ++.|...+.+..+.++.| +++. +..+|+ | +.|.+.+
T Consensus 162 ~fiG~~~~~-----~~d~~~k~v~~~~~E~vG----~~~~~~~~~g~~~v~nvEYsel~ 211 (315)
T cd06424 162 AVLGVSATK-----SLDMNSLTVPRKPKEAIG----ALCKLTKNNGKSMTINVEYNQLD 211 (315)
T ss_pred hhEEEEecC-----CCceEeEEEeCCCCCcee----eEEEEecCCCceEEEEEEeecCC
Confidence 223333332 455555443444445555 5543 222333 4 7787754
No 260
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.04 E-value=0.013 Score=62.71 Aligned_cols=160 Identities=9% Similarity=0.093 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccC-CeehHHHHHHHHHh----CCC-cEEEEEecC-ChHHHHHHHHhcccccCC
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLV-NKCLLEYTLEHLHL----SGI-EEIIVFCTS-HVNQIRELVKRKEKSLVG 88 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~-g~pli~~~l~~L~~----~gi-~~i~vv~~~-~~~~i~~~l~~~~~~~~~ 88 (627)
..+-+|+||||.||||.- ..||.|+||. ++.+++..++.+.. .|+ =..+|.++. ..+..++|+++ .++ .+
T Consensus 55 ~kvavl~LaGGlGTrlG~-~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg-~~ 131 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLGC-SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG-LD 131 (420)
T ss_dssp TCEEEEEEEESBSGCCTE-SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG-SS
T ss_pred CCEEEEEEcCcccCccCC-CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC-CC
Confidence 457788999999999975 7899999996 67899999888764 232 345666774 57888999987 333 12
Q ss_pred eeEEEEeC----------------CC----------CcchhhhhhcccccCCcc-------CCEEEEeCCeeccccHHHH
Q psy1482 89 TLITLIVS----------------DG----------CYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSNINLLSA 135 (627)
Q Consensus 89 ~~v~~i~~----------------~~----------~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~~~l~~~ 135 (627)
..|.++.| +. +.|-|+..+.+....+++ +.+.+.+.|.+...-=-.+
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~ 211 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF 211 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH
Confidence 22433322 11 337888887776665542 5688899999654432345
Q ss_pred HHHHHHHhcCCCCceEEEEeec-cCCCCCCCCcceEEEEECCCCeEEEeeCCC
Q psy1482 136 LKSFKKINSMDSGAVALVLYKK-KGQSKSSWKEDLIVAYECDSKKLLMHQTPQ 187 (627)
Q Consensus 136 l~~h~~~~~~~~~~~~T~~~~~-~~~~~~~~~~~~vv~~d~~~~~vl~~~e~~ 187 (627)
+-.+... ++.+.+-+.+ ..+..+.| +++.....-+|+.|.+.|
T Consensus 212 lG~~~~~-----~~~~~~evv~Kt~~dek~G----vl~~~~G~~~vvEysqip 255 (420)
T PF01704_consen 212 LGYMIEK-----NADFGMEVVPKTSPDEKGG----VLCRYDGKLQVVEYSQIP 255 (420)
T ss_dssp HHHHHHT-----T-SEEEEEEE-CSTTTSSE----EEEEETTEEEEEEGGGS-
T ss_pred HHHHHhc-----cchhheeeeecCCCCCcee----EEEEeCCccEEEEeccCC
Confidence 5655554 4556554443 44445554 555431223466676654
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.014 Score=61.64 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=98.8
Q ss_pred CCceEEEEEeCCCCCCCCcCCCCccccccC-CeehHHHHHHHHHhC----CC-cEEEEEecCChHHHHHHHHhccccc-C
Q psy1482 15 DEVLQAVIVTDTFNRNFFPVPEPYCLLPLV-NKCLLEYTLEHLHLS----GI-EEIIVFCTSHVNQIRELVKRKEKSL-V 87 (627)
Q Consensus 15 ~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~-g~pli~~~l~~L~~~----gi-~~i~vv~~~~~~~i~~~l~~~~~~~-~ 87 (627)
+..+-+|+||||.|+||.- ..||.|++|. |+++++.+.+.+..+ ++ -..+|.++...++-..|+....|.. .
T Consensus 103 ~~klAvl~LaGGqGtrlG~-~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~~~ 181 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC-DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFGLD 181 (472)
T ss_pred cCceEEEEecCCccccccc-CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcCCC
Confidence 4567799999999999986 7999999999 899999998887543 43 2345555544434444544433321 1
Q ss_pred CeeEEEEeCC-----------------------CCcchhhhhhcccccCCcc-------CCEEEEeCCeecc-ccHHHHH
Q psy1482 88 GTLITLIVSD-----------------------GCYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSN-INLLSAL 136 (627)
Q Consensus 88 ~~~v~~i~~~-----------------------~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~~-~~l~~~l 136 (627)
+..|.+..|. .+.|.|+..+.+.....+. +.+.|.+.|.+.- +|+ .++
T Consensus 182 k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~-~~l 260 (472)
T COG4284 182 KEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL-KFL 260 (472)
T ss_pred HHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-HHH
Confidence 2233333321 2346677666554433331 4577789998643 344 345
Q ss_pred HHHHHHhcCCCCceEEEEeecc-CCCCCCCCcceEEE-EECCCCeEEEeeCCCC
Q psy1482 137 KSFKKINSMDSGAVALVLYKKK-GQSKSSWKEDLIVA-YECDSKKLLMHQTPQD 188 (627)
Q Consensus 137 ~~h~~~~~~~~~~~~T~~~~~~-~~~~~~~~~~~vv~-~d~~~~~vl~~~e~~~ 188 (627)
.+|... ++..+|=+... .+....| +++ +| ..-||+.|.+.+.
T Consensus 261 g~~~~~-----~~e~~~e~t~Kt~a~ekvG----~Lv~~~-g~~rllEysev~~ 304 (472)
T COG4284 261 GFMAET-----NYEYLMETTDKTKADEKVG----ILVTYD-GKLRLLEYSEVPN 304 (472)
T ss_pred HHHHhc-----CcceeEEEeecccccccce----EEEEeC-CceEEEEEecCCh
Confidence 555554 56666655442 2223333 554 66 5689999999774
No 262
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.012 Score=55.90 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=69.9
Q ss_pred eEEEEEeCCCC-CCCCcCCCCccccccCCeehHHHHHHHHHhCC-CcEEEEEecC-C-hHHHHHHHHhcccccCCeeEEE
Q psy1482 18 LQAVIVTDTFN-RNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTS-H-VNQIRELVKRKEKSLVGTLITL 93 (627)
Q Consensus 18 ~~aVIlA~g~g-~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~g-i~~i~vv~~~-~-~~~i~~~l~~~~~~~~~~~v~~ 93 (627)
|-++|+.+-.| +||- -|.|+|+++.|||+|+|+.+..+. +.+++|.++. + .+.++.+..+. + +.+
T Consensus 3 ~I~~IiQARmgStRLp----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~--G-----~~v 71 (241)
T COG1861 3 MILVIIQARMGSTRLP----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH--G-----FYV 71 (241)
T ss_pred cEEEEeeecccCccCC----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc--C-----eeE
Confidence 45566666554 6774 499999999999999999998875 6888888884 3 45566666542 2 334
Q ss_pred EeCCCCcchhhhhhcc-cccCCccCC-EEEEeCCe-eccccH-HHHHHHHHHH
Q psy1482 94 IVSDGCYSFGDVMRDL-DGKAVIRND-FILVSGDV-VSNINL-LSALKSFKKI 142 (627)
Q Consensus 94 i~~~~~~~~gdalr~l-~~~~~i~~d-fll~~gD~-i~~~~l-~~~l~~h~~~ 142 (627)
+. .+..++|..+ .+.+....+ ++=+.||. +.+..+ ..++..|.+.
T Consensus 72 fr----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ 120 (241)
T COG1861 72 FR----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEK 120 (241)
T ss_pred ec----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence 31 2334455432 222223344 44489998 344443 5667777765
No 263
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.54 E-value=0.011 Score=68.74 Aligned_cols=138 Identities=12% Similarity=-0.046 Sum_probs=75.6
Q ss_pred CEEEEeCCeeccccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCCCcceEEEEECCC-CeEEEeeCCCCCCCccccc
Q psy1482 118 DFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDS-KKLLMHQTPQDNQKKVNIP 196 (627)
Q Consensus 118 dfll~~gD~i~~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vv~~d~~~-~~vl~~~e~~~~~~~~~~~ 196 (627)
..+|.+||++..++-. +. .-+++.++.+....++. .+.+-+|++.|.++ +++-++-.||. ...+
T Consensus 154 g~li~~gDv~~~f~~~--~~-------~~~~~~~~~~~~~~~~~--~~~~HGVfv~~~~~~~~~~~~LqKps-~eel--- 218 (974)
T PRK13412 154 HTLIASGDVYIRSEQP--LQ-------DIPEADVVCYGLWVDPS--LATNHGVFVSSRKSPERLDFMLQKPS-LEEL--- 218 (974)
T ss_pred ceEEEecchhhhcccc--cc-------CCCccCeEEEEeccChh--hccCceEEEeCCCChHHHHHHhcCCC-HHHH---
Confidence 5888999976433211 00 01123333333332222 22455688888432 56666666663 1111
Q ss_pred hhhhccCCcEEEEecCCcceeeecCCchhhhhhcC-C-----CCC--c-hhhhhcc-----cccChhcccCeeEEEEcCC
Q psy1482 197 MENILLYSKLEICAHLASTGIMICSPAVPPLFSDN-F-----DFQ--T-QEHFIKG-----VLINEEILDCRLYCSVVDD 262 (627)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~Giyi~s~~vl~~~~~~-f-----d~~--~-~~dfi~~-----il~~~~~~g~~I~~~~~~~ 262 (627)
..+.. -..-+.|+|+|+|+....+.+... + ... + -.||... .+...++.+.++....+++
T Consensus 219 ~a~~~------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~ 292 (974)
T PRK13412 219 GGLSK------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPG 292 (974)
T ss_pred Hhhhc------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCC
Confidence 11111 134588999999999877744321 1 000 1 2355432 2333456778888888987
Q ss_pred CceeeecCChhhHHH
Q psy1482 263 IEYGISVKDWPSYQI 277 (627)
Q Consensus 263 ~~~~~~V~s~~~y~~ 277 (627)
+ -++.+||-+.|..
T Consensus 293 ~-~F~H~GTs~E~l~ 306 (974)
T PRK13412 293 G-EFYHYGTSRELIS 306 (974)
T ss_pred c-eeEEecCcHHHhc
Confidence 7 8889998877764
No 264
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.44 E-value=0.064 Score=59.90 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=92.5
Q ss_pred CceEEEEEeCCCCCCCCcCCCCccccccC---CeehHHHHHHHHHhC--------C----CcEEEEEecC-ChHHHHHHH
Q psy1482 16 EVLQAVIVTDTFNRNFFPVPEPYCLLPLV---NKCLLEYTLEHLHLS--------G----IEEIIVFCTS-HVNQIRELV 79 (627)
Q Consensus 16 ~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~---g~pli~~~l~~L~~~--------g----i~~i~vv~~~-~~~~i~~~l 79 (627)
..+-+|+||||.||||.- ..||.+||++ |+++++..++.+... + .-..+|.++. ..+...+|+
T Consensus 127 ~kvavllLaGGlGTRLG~-~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~ 205 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGY-SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLL 205 (615)
T ss_pred CcEEEEEecCCcccccCC-CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHH
Confidence 346689999999999985 7899999983 899999999998553 1 1235777775 467788999
Q ss_pred Hhccc-ccCCeeEEEEeCC------------------------CCcchhhhhhcccccCCcc-------CCEEEEeCCee
Q psy1482 80 KRKEK-SLVGTLITLIVSD------------------------GCYSFGDVMRDLDGKAVIR-------NDFILVSGDVV 127 (627)
Q Consensus 80 ~~~~~-~~~~~~v~~i~~~------------------------~~~~~gdalr~l~~~~~i~-------~dfll~~gD~i 127 (627)
++..| +...-+|.++.|. .+.|-|+..+.+....+++ ..+.+.+.|.+
T Consensus 206 ~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~ 285 (615)
T PLN02830 206 ERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNG 285 (615)
T ss_pred HHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccch
Confidence 87554 2122234433321 3356777777776666653 45777778873
Q ss_pred c-cccHHHHHHHHHHHhcCCCCceEEEEeeccCCCCCCC
Q psy1482 128 S-NINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSW 165 (627)
Q Consensus 128 ~-~~~l~~~l~~h~~~~~~~~~~~~T~~~~~~~~~~~~~ 165 (627)
. ..-.-.++-.+..+ ++.+.+.+.+..+...-|
T Consensus 286 L~~~Adp~flG~~~~~-----~~d~~~kvv~K~~~E~vG 319 (615)
T PLN02830 286 LVFKAIPAALGVSATK-----GFDMNSLAVPRKAKEAIG 319 (615)
T ss_pred hhhcccHHHhHHHHhc-----CCceEEEEEECCCCcccc
Confidence 2 12224455555554 566666555544444444
No 265
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=96.35 E-value=0.051 Score=54.40 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhhHHhcCCC----hHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhhHHHHHHH
Q psy1482 471 EVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVT----VKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKN 546 (627)
Q Consensus 471 ev~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~----~~~v~~~v~~ail~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 546 (627)
++...|.+.+..+.+.+++..-++.+....+-. ..-++.+++++++... .++ ...+...+++|+..|+.
T Consensus 12 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~G------SkS-~SH~~~~lery~~~Lk~ 84 (253)
T PF09090_consen 12 ALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIG------SKS-FSHVLSALERYKEVLKE 84 (253)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHT------TTS-HHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhc------Cch-HHHHHHHHHHHHHHHHH
Confidence 344466667777777776666666655443322 1345666777777763 444 56777899999999999
Q ss_pred h-hcCcHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhh
Q psy1482 547 Y-IKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWF 597 (627)
Q Consensus 547 ~-~~~~~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~ 597 (627)
+ ..+...|..+|.++-.|...+|+ ....++..|=...||+-.+|++|.
T Consensus 85 l~~~~~~~q~~il~~v~~~W~~~~q---~~~li~dkll~~~ii~~~~Vv~w~ 133 (253)
T PF09090_consen 85 LEAESEEAQFWILDAVFRFWKNNPQ---MGFLIIDKLLNYGIISPSAVVNWV 133 (253)
T ss_dssp H-TSSHHHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred hccCChHHHHHHHHHHHHHHhcCCc---eehHHHHHHHhcCCCCHHHHHHHH
Confidence 9 78889999999999999988875 356788888999999999999998
No 266
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.67 E-value=0.014 Score=55.18 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCccccccCC--eehHHHHHHHHHhCCCcEEEEEecCC
Q psy1482 36 EPYCLLPLVN--KCLLEYTLEHLHLSGIEEIIVFCTSH 71 (627)
Q Consensus 36 ~PK~Llpi~g--~pli~~~l~~L~~~gi~~i~vv~~~~ 71 (627)
.||+|+++.| +|||+|+++.+. ..+.+|+|+++..
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~ 39 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPG 39 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCC
Confidence 5899999999 999999999765 5689999999753
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.14 E-value=0.04 Score=59.18 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCc
Q psy1482 324 GSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT 376 (627)
Q Consensus 324 ~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~ 376 (627)
.+.+..++.|-+|+|..++.||++++|.+|.|+.++.||+||.|.++-+....
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccccc
Confidence 45566777788888888888888888888888888888888888877655543
No 268
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=94.59 E-value=0.067 Score=57.50 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=44.4
Q ss_pred ECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCCEECCC
Q psy1482 338 IGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTG 393 (627)
Q Consensus 338 Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ii~~~ 393 (627)
....+.+..++.|.+|+|..++.+|++++|++|.|+.++.||.+|.|. |+-+...
T Consensus 270 ~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~ 324 (414)
T PF07959_consen 270 ATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSW 324 (414)
T ss_pred cccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccc
Confidence 344566778888889999999999999999999999999999998888 6755443
No 269
>KOG1104|consensus
Probab=93.13 E-value=0.72 Score=51.44 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhhHHhcCCC-hHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhhHHHHHHHhhcC
Q psy1482 472 VVDSLLRGYEEKLVCDNLTLEINSSRYAYNVT-VKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKNYIKN 550 (627)
Q Consensus 472 v~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~-~~~v~~~v~~ail~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 550 (627)
+...+.+++++..+.+.+..+|++=--.+..+ ..=.+.++++++++.. .+++ .....++.+|+.+|++++.+
T Consensus 502 ~~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lG------SKSf-SH~f~~lek~~~vfk~l~~~ 574 (759)
T KOG1104|consen 502 VAVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLG------SKSF-SHAFSALEKYHTVFKKLCED 574 (759)
T ss_pred HHHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhc------cchh-hhHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999998111111111 2234556778888873 4553 45577899999999999988
Q ss_pred cHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhh
Q psy1482 551 ESA-QQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWF 597 (627)
Q Consensus 551 ~~~-q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~ 597 (627)
... |..+|.++=.+...+++. ...++..|-...||+-.+|.+|-
T Consensus 575 ~e~~q~~vl~~vft~Wk~n~Qm---~~v~~Dkml~~~ii~~~aVv~Wi 619 (759)
T KOG1104|consen 575 SETKQIIVLEAVFTFWKANPQM---GFVLTDKMLKYQIIDCSAVVRWI 619 (759)
T ss_pred CchhHHHHHHHHHHHHhcCchh---hHHHHHHHhccccccHHHHHHHh
Confidence 866 999999999999888864 34566667778899999999998
No 270
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=92.14 E-value=0.32 Score=46.42 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=54.2
Q ss_pred eehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc-CCEEEEeC
Q psy1482 46 KCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR-NDFILVSG 124 (627)
Q Consensus 46 ~pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~-~dfll~~g 124 (627)
+|||.|+++.+...++.+++|+++. +.+.+++.. ..+.++.+.. .|.+.+++.....-.-. +.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-------~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-------LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-------cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeC
Confidence 6999999999999988888888763 445555443 2245555444 38888887432211111 35999999
Q ss_pred Cee--ccccHHHHHHHH
Q psy1482 125 DVV--SNINLLSALKSF 139 (627)
Q Consensus 125 D~i--~~~~l~~~l~~h 139 (627)
|+- ..-.+..+++.+
T Consensus 100 D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAA 116 (195)
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 984 334566666644
No 271
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=91.82 E-value=1 Score=39.71 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=61.4
Q ss_pred ccccCCe-ehHHHHHHHHHhCC--CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSG--IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR 116 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~ 116 (627)
++|..|. +++.++++.+...+ ..+++|+.+...+...+++..... ....+..+......+.+.++... ....+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~--~~~~~ 77 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK--KDPRVIRVINEENQGLAAARNAG--LKAAR 77 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh--cCCCeEEEEecCCCChHHHHHHH--HHHhc
Confidence 4566665 99999999999987 788999888766666666654211 11234555566777888777632 22234
Q ss_pred C-CEEEEeCCeeccccHHHH
Q psy1482 117 N-DFILVSGDVVSNINLLSA 135 (627)
Q Consensus 117 ~-dfll~~gD~i~~~~l~~~ 135 (627)
. .++++.+|.+...+....
T Consensus 78 ~d~v~~~d~D~~~~~~~~~~ 97 (156)
T cd00761 78 GEYILFLDADDLLLPDWLER 97 (156)
T ss_pred CCEEEEECCCCccCccHHHH
Confidence 4 477889999887765443
No 272
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=87.78 E-value=1.3 Score=37.42 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=47.2
Q ss_pred eEECCCCEEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeec-CCcEECCCcEEC
Q psy1482 307 VLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLS-YNTGVGEHSKLL 385 (627)
Q Consensus 307 ~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~-~~~~Ig~~~~i~ 385 (627)
+.|++++.+.++.....+..|... .-++........|+.++.|...+-.+.+.|... +.+.+.+ ..+.|...+.+.
T Consensus 3 ~~I~~~~~i~G~i~~~~~v~i~G~-v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~ 79 (101)
T PF04519_consen 3 TIIGKGTKIEGDISSDGDVRIDGR-VEGNIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVE 79 (101)
T ss_pred EEECCCCEEEEEEEECcEEEEEEE-EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEE
Confidence 455666666655555555555322 223333333566666666655555555555322 4444444 445566666665
Q ss_pred CCCEECCCcEECCCcEEC
Q psy1482 386 NGCLLGTGVLIGNKTCLS 403 (627)
Q Consensus 386 ~~~ii~~~~~ig~~~~v~ 403 (627)
|-+-.....|.+++.+.
T Consensus 80 -G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 80 -GDITAGKLEVEGGASIN 96 (101)
T ss_pred -EEEEECEEEEeCCCEEE
Confidence 44444445555554443
No 273
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=86.77 E-value=3.5 Score=37.33 Aligned_cols=101 Identities=11% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCCeEECCCCEEcCCcEECCCCEECCCceeeeeEECCC-CEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCc
Q psy1482 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRN-CTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHS 382 (627)
Q Consensus 304 ~~~~~i~~~~~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~-~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~ 382 (627)
..++.|+.++.+.+.......-+|.. .+.+.+..++ +.|+...+|...+..+...| +|++.++....+.+.|.+.+
T Consensus 21 ~~~tli~~g~~f~G~l~f~~~l~IdG--~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g 97 (146)
T COG1664 21 KPETLIGAGTTFKGELVFEGPLRIDG--TFEGDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGG 97 (146)
T ss_pred CCCeEEecCCEEEEEEEecceEEEeE--EEEEEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCc
Confidence 34566666677766655555555542 4555555555 77777777766555555444 34444445556666666666
Q ss_pred EECCCCEECCCcEECCCcEECCCccc
Q psy1482 383 KLLNGCLLGTGVLIGNKTCLSGVKLP 408 (627)
Q Consensus 383 ~i~~~~ii~~~~~ig~~~~v~~~~~v 408 (627)
++- |-+=+....|..++.+.+.+..
T Consensus 98 ~v~-GdI~~~~i~v~~Ga~f~G~~~~ 122 (146)
T COG1664 98 RVI-GDITTKEITVEEGAIFEGDCEM 122 (146)
T ss_pred EEe-eeecccEEEEccCCEEEeEEEe
Confidence 555 4455555666666666554443
No 274
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=86.05 E-value=16 Score=31.11 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhhHHHHHHHh
Q psy1482 468 FYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKNY 547 (627)
Q Consensus 468 F~~ev~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ail~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 547 (627)
|++.+...|...+.. .+.++++..|+.+... .-.++++..++...++. .+.. -+.+..++..+
T Consensus 1 ~rk~i~~~l~ey~~~-~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~-------r~~~~~Ll~~L 63 (113)
T PF02847_consen 1 LRKKIFSILMEYFSS-GDVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSY-------REYYSKLLSHL 63 (113)
T ss_dssp HHHHHHHHHHHHHHH-T-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHH-------HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcC-CCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHH-------HHHHHHHHHHH
Confidence 567777788877754 5788899999988666 45566776666666664 1121 23445555665
Q ss_pred hcCc-HHHHH-------HHHHHHHHHhhccchHHHHHHHHHHHhhcCCC
Q psy1482 548 IKNE-SAQQD-------CLDAFEEFAEENESLSVVAGKLLHKLYDKDIL 588 (627)
Q Consensus 548 ~~~~-~~q~~-------~l~ale~~~~~~~~~~~~~~~il~~lYd~dil 588 (627)
+... -.+-+ ++..++.+..+.|.....+..++-.+...++|
T Consensus 64 ~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~l 112 (113)
T PF02847_consen 64 CKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIADGIL 112 (113)
T ss_dssp HHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHcCCc
Confidence 5433 22223 44455555555666777889999998888876
No 275
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=82.40 E-value=1.9 Score=50.81 Aligned_cols=29 Identities=31% Similarity=0.193 Sum_probs=21.8
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Q psy1482 539 YFLPLFKNYIKNESAQQDCLDAFEEFAEE 567 (627)
Q Consensus 539 ~~~~ll~~~~~~~~~q~~~l~ale~~~~~ 567 (627)
.|.-|-.+|.++--.|+++-.+.+.||..
T Consensus 511 ~~~~l~~n~~~~~~~ql~~~~~~~~~~~~ 539 (974)
T PRK13412 511 NWRALAANHEKSVFYQLDLADAAEDFVRL 539 (974)
T ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Confidence 56667777777777788888888888764
No 276
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=79.58 E-value=8 Score=34.65 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccccCCe-ehHHHHHHHHHhC--CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLS--GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR 116 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~ 116 (627)
++|.-|. ..|..+|+.|... ...+|+|+-+...+...+.+.+..- ...++.++..+...|.+.++... -....
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~--~~~a~ 78 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRG--IKHAK 78 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHH--HHH--
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--ccccccccccccccccccccccc--ccccc
Confidence 4677776 7899999999876 5677777776544444444443210 12568888877666888877633 22344
Q ss_pred C-CEEEEeCCeecccc-HHHHHHHHHHH
Q psy1482 117 N-DFILVSGDVVSNIN-LLSALKSFKKI 142 (627)
Q Consensus 117 ~-dfll~~gD~i~~~~-l~~~l~~h~~~ 142 (627)
+ -++++..|.+...+ +..+++.+.+.
T Consensus 79 ~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 79 GEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred eeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 4 46678999887665 77777777764
No 277
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=74.29 E-value=7.5 Score=32.62 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=39.1
Q ss_pred EcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEEC-CCCEeCCCcEEeeeeecCCcEECCCcEEC
Q psy1482 315 LKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLF-DNVKIEDNCEVRLSVLSYNTGVGEHSKLL 385 (627)
Q Consensus 315 i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~-~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 385 (627)
+.++........|+.++.|.+.+-.+.+.|.. . +...+.. ..+.|...+.|.+.+-.+...|.+++.+.
T Consensus 27 v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G-~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 27 VEGNIKAEGKVKIGGNGEVKGDIKADDVIISG-S-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASIN 96 (101)
T ss_pred EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcC-E-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEE
Confidence 33344443355666666665555555555542 2 4333333 55667777777776666666666666664
No 278
>KOG2638|consensus
Probab=72.27 E-value=1.4e+02 Score=31.76 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCCCCcCCCCccccccC-CeehHHHHHHH---HHh-CCCcEEEEEecC--ChHHHHHHHHhcccccCCee
Q psy1482 18 LQAVIVTDTFNRNFFPVPEPYCLLPLV-NKCLLEYTLEH---LHL-SGIEEIIVFCTS--HVNQIRELVKRKEKSLVGTL 90 (627)
Q Consensus 18 ~~aVIlA~g~g~R~~Pl~~PK~Llpi~-g~pli~~~l~~---L~~-~gi~~i~vv~~~--~~~~i~~~l~~~~~~~~~~~ 90 (627)
+-.+=|-||.|+-|.= ..||.+++|- |...|+-++.. |.+ -+++-=+|+-++ -.++.+++++++.. ..+.
T Consensus 104 LavlKLNGGlGttmGc-~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~--~kv~ 180 (498)
T KOG2638|consen 104 LAVLKLNGGLGTTMGC-KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG--SKVD 180 (498)
T ss_pred eEEEEecCCcCCcccc-CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC--Ccee
Confidence 4466688999999876 7899999997 56777765554 433 234333444443 35677777776322 1233
Q ss_pred EEEEeCC-----------------------C--CcchhhhhhcccccCCcc-------CCEEEEeCCeec-cccHH
Q psy1482 91 ITLIVSD-----------------------G--CYSFGDVMRDLDGKAVIR-------NDFILVSGDVVS-NINLL 133 (627)
Q Consensus 91 v~~i~~~-----------------------~--~~~~gdalr~l~~~~~i~-------~dfll~~gD~i~-~~~l~ 133 (627)
|..+.|. . +-|.|+....+.....++ +..+|-+.|.+. ..||.
T Consensus 181 i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 181 IKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN 256 (498)
T ss_pred EEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH
Confidence 3322220 1 135666655555555442 457778999984 45664
No 279
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=68.32 E-value=25 Score=31.82 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred EEcCCcEECCCCEECCCceeeeeEECCCCEECCCcEEeceEECCCCEeCCCcEEeeeeecCCcEECCCcEECCCC
Q psy1482 314 VLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGC 388 (627)
Q Consensus 314 ~i~~~~~ig~~~~Ig~~~~I~~s~Ig~~~~Ig~~~~I~~s~i~~~v~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~ 388 (627)
.+.+.+....++.|++...|.+.+.-+...| +++..++....+.+.|...+.+.+-+=+....|..|+.+.-.|
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~ 120 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDC 120 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEE
Confidence 3333444444477777777765555555444 2444444566677777777777777777777777777665333
No 280
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=64.40 E-value=23 Score=28.75 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHHHHHHHhh
Q psy1482 473 VDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVK 519 (627)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ail~~~ 519 (627)
+..|+++++++.+|.+++..|...|-|-|. +...++..-+..+
T Consensus 18 v~gI~~Miee~~~C~dIl~Qi~Av~~Al~~----~~~~vl~~hl~~c 60 (85)
T PF02583_consen 18 VRGIERMIEEDRDCEDILQQIAAVRSALDK----VGKLVLEDHLEHC 60 (85)
T ss_dssp HHHHHHHHHTTE-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 347889999999999999999999999874 4444444444443
No 281
>PRK11352 regulator protein FrmR; Provisional
Probab=58.33 E-value=51 Score=27.17 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHH
Q psy1482 473 VDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVN 508 (627)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~ 508 (627)
++.|+++++++..|.+++..|+..|-|-+.-...++
T Consensus 22 v~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~il 57 (91)
T PRK11352 22 IDALERSLEGDAECRAILQQIAAVRGAANGLMAEVL 57 (91)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999774433333
No 282
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.90 E-value=1.1e+02 Score=28.59 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=56.5
Q ss_pred ccccCCee---hHHHHHHHHHhCC--CcEEEEEecC-ChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccC
Q psy1482 40 LLPLVNKC---LLEYTLEHLHLSG--IEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKA 113 (627)
Q Consensus 40 Llpi~g~p---li~~~l~~L~~~g--i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~ 113 (627)
++|+.|.. .|..+|+.+.... ..+++|+-.. ..+...+.+..... ..++.++..+...|.+.|+... -.
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~---~~~i~~i~~~~n~G~~~a~N~g--~~ 77 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR---KLPLKVVPLEKNRGLGKALNEG--LK 77 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh---cCCeEEEEcCccccHHHHHHHH--HH
Confidence 57888764 8999999998754 3566666443 24445444443211 1236666655567888887632 22
Q ss_pred CccCC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 114 VIRND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 114 ~i~~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
..+++ ++++.+|.+...+ +..+++...
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~ 106 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIE 106 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHH
Confidence 33555 5556778776544 555565543
No 283
>KOG2388|consensus
Probab=57.59 E-value=11 Score=40.45 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=54.2
Q ss_pred cCCceEEEEEeCCCCCCCCcCCCCccccccC---CeehHHHHHHHHHh----------CCC-cEEEEEecC-ChHHHHHH
Q psy1482 14 KDEVLQAVIVTDTFNRNFFPVPEPYCLLPLV---NKCLLEYTLEHLHL----------SGI-EEIIVFCTS-HVNQIREL 78 (627)
Q Consensus 14 ~~~~~~aVIlA~g~g~R~~Pl~~PK~Llpi~---g~pli~~~l~~L~~----------~gi-~~i~vv~~~-~~~~i~~~ 78 (627)
.+...-++++|+|+|||+.- ..||.++|++ |+.++++..+.+.. .|. -..+|.++. -.+...+|
T Consensus 94 ~~~~~a~~llaGgqgtRLg~-~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 94 AEGKVAVVLLAGGQGTRLGS-SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred hcCcceEEEeccCceeeecc-CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 34567899999999999875 7899999998 55688877766532 232 223666665 35666677
Q ss_pred HHhc-ccccCCeeEEEEeC
Q psy1482 79 VKRK-EKSLVGTLITLIVS 96 (627)
Q Consensus 79 l~~~-~~~~~~~~v~~i~~ 96 (627)
++.. .++..+.+|++..|
T Consensus 173 f~~~~~FGl~~~qv~~f~Q 191 (477)
T KOG2388|consen 173 FESHKYFGLKPEQVTFFQQ 191 (477)
T ss_pred HhhcCCCCCChhHeeeeec
Confidence 7653 33423334666654
No 284
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=55.31 E-value=1.6e+02 Score=29.04 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccc-hHHHHHHHHHHHhhcCCCChhhHhhhhhcC
Q psy1482 557 CLDAFEEFAEENES-LSVVAGKLLHKLYDKDILSEDIVTKWFNKL 600 (627)
Q Consensus 557 ~l~ale~~~~~~~~-~~~~~~~il~~lYd~dil~Ee~il~W~~~~ 600 (627)
++..+|......+. -..+.-..++++| +.|+.+.+|-..-
T Consensus 162 ~~~~le~l~~~~~~p~~~~Ve~YIKAyY----l~e~e~~~W~~~h 202 (234)
T PF10474_consen 162 LQNKLEKLSGIRPIPNREYVENYIKAYY----LPEEELEEWIRTH 202 (234)
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHc----CCHHHHHHHHHhC
Confidence 34445544443332 3567788999999 8899999999763
No 285
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.36 E-value=1.1e+02 Score=27.03 Aligned_cols=94 Identities=21% Similarity=0.197 Sum_probs=57.6
Q ss_pred ccccCCe-ehHHHHHHHHHhC--CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLS--GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR 116 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~ 116 (627)
++|.-|. ..|..+++.|... ...+++|+.....+...+.+.... ..+.++..+...|.+.|+... ....+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n~~--~~~~~ 74 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQG--IREAK 74 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC-----CCeEEEecCCCcChHHHhhHH--HhhCC
Confidence 3556555 7899999999775 356777777655555555555421 146666666677888887632 23345
Q ss_pred CC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 117 ND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 117 ~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
.+ ++++-.|.+...+ +..+++.+.
T Consensus 75 ~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 75 GDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred CCEEEEECCCcEECccHHHHHHHHHH
Confidence 66 4455677765544 555555433
No 286
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=51.95 E-value=74 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCCccccccCC------eehHHHHHHHHHh---CCCcEEEEEecC-ChHHHHHHHHh
Q psy1482 35 PEPYCLLPLVN------KCLLEYTLEHLHL---SGIEEIIVFCTS-HVNQIRELVKR 81 (627)
Q Consensus 35 ~~PK~Llpi~g------~pli~~~l~~L~~---~gi~~i~vv~~~-~~~~i~~~l~~ 81 (627)
..||.|||+-. +|+=+|..|...- .|.-++..-++. |.+.+++.+.+
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~ 221 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEE 221 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHH
Confidence 67999999953 5999999999643 456677777774 88888877765
No 287
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=51.84 E-value=77 Score=32.18 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=57.6
Q ss_pred ccccCCee--hHHHHHHHHHhCC----CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccC
Q psy1482 40 LLPLVNKC--LLEYTLEHLHLSG----IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKA 113 (627)
Q Consensus 40 Llpi~g~p--li~~~l~~L~~~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~ 113 (627)
.+|.-|.+ .|..+|+.+...- ..+|+||-+...+.....+...........+.++..+...|.+.|.... ..
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g--~~ 80 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAG--AR 80 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHH--HH
Confidence 35666655 8889999987543 2388888664333332222110000011357777777777888776532 12
Q ss_pred CccCC-EEEEeCCeecccc-HHHHHHHHHH
Q psy1482 114 VIRND-FILVSGDVVSNIN-LLSALKSFKK 141 (627)
Q Consensus 114 ~i~~d-fll~~gD~i~~~~-l~~~l~~h~~ 141 (627)
..+++ ++++.+|+....+ |..+++....
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~ 110 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAE 110 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHh
Confidence 23455 6668999987554 6777776654
No 288
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=51.60 E-value=1.1e+02 Score=27.12 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred ccccCCe-ehHHHHHHHHHhCC--CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSG--IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR 116 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~ 116 (627)
++|.-|. ..|..+|+.+.+.. ..+++|+-....+...+.+....-. ....+.++......|.+.++... -...+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~n~~--~~~~~ 78 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-YIRRVLVVRDKENGGKAGALNAG--LRHAK 78 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-ccceEEEEEecccCCchHHHHHH--HHhcC
Confidence 4566665 78889999998765 4567777654343333333331100 11234555566667888777633 22335
Q ss_pred CC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 117 ND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 117 ~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
.+ ++++.+|.+...+ +..++..+.
T Consensus 79 ~~~i~~~D~D~~~~~~~l~~~~~~~~ 104 (180)
T cd06423 79 GDIVVVLDADTILEPDALKRLVVPFF 104 (180)
T ss_pred CCEEEEECCCCCcChHHHHHHHHHhc
Confidence 55 6778888876554 444434443
No 289
>PRK11376 hlyE hemolysin E; Provisional
Probab=48.35 E-value=52 Score=31.40 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcc-CChhhHHHHHHhhHHhcCCChHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHhhHHHHHHHh
Q psy1482 469 YTEVVDSLLRGYEEK-LVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYFLPLFKNY 547 (627)
Q Consensus 469 ~~ev~~~l~~~~~~~-~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ail~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 547 (627)
.+|+++.|.|.+.+= -...+.+-+|++|-+....++.++...|+ +|| -.+.+++..|..||..|
T Consensus 40 LQeAIdeIDRaMlgYqG~AK~~Ld~IRsLnSdAr~kYqecV~pVF----EWC-----------VSinqll~ay~~lf~ey 104 (303)
T PRK11376 40 FDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVY----EWC-----------GVATQLLAAYILLFDEY 104 (303)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHhhHHHH----HHH-----------HHHHHHHHHHHHHHHHh
Confidence 568888888888552 35567888999998888777777766554 565 23445566666666666
Q ss_pred hc
Q psy1482 548 IK 549 (627)
Q Consensus 548 ~~ 549 (627)
-.
T Consensus 105 ~e 106 (303)
T PRK11376 105 NE 106 (303)
T ss_pred hh
Confidence 54
No 290
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=47.59 E-value=88 Score=25.74 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHH
Q psy1482 473 VDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEV 507 (627)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v 507 (627)
+..|+++++++..|.+++..|...|-|-|.-...+
T Consensus 22 v~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 22 VVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999877443333
No 291
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=46.56 E-value=1e+02 Score=28.18 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=53.2
Q ss_pred ccccCCe-ehHHHHHHHHHhC----CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCC
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLS----GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAV 114 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~ 114 (627)
++|.-|. ..|..+|+.+.+. ...+|+|+-+...+...+.++.... ....+.++..+...|.+.|+... ...
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~--~~~~~~~~~~~~n~G~~~a~n~g--~~~ 77 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA--RVPRVRVIRLSRNFGKGAAVRAG--FKA 77 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH--hCCCeEEEEccCCCCccHHHHHH--HHH
Confidence 3555555 5677888888776 3677877766433333333332110 00124566666667777776532 222
Q ss_pred ccCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 115 IRND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 115 i~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
..++ ++++.+|.....+ +..++..
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~ 103 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEK 103 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3445 6667888776554 5556654
No 292
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=42.48 E-value=1.3e+02 Score=28.41 Aligned_cols=94 Identities=20% Similarity=0.200 Sum_probs=53.0
Q ss_pred ccccCCe-ehHHHHHHHHHhC------CCcEEEEEecCChHHHHHHHHhc--ccccCCeeEEEEeCCCCcchhhhhhccc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLS------GIEEIIVFCTSHVNQIRELVKRK--EKSLVGTLITLIVSDGCYSFGDVMRDLD 110 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~------gi~~i~vv~~~~~~~i~~~l~~~--~~~~~~~~v~~i~~~~~~~~gdalr~l~ 110 (627)
++|.-|. ..|..+|+.+... ..-+|+|+-+...+...+.++.. ++ +..+.++......|.+.|+...
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~---~~~i~~i~~~~n~G~~~a~~~g- 77 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKN---PALIRVLTLPKNRGKGGAVRAG- 77 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhC---CCcEEEEEcccCCCcHHHHHHH-
Confidence 4566664 5677777777653 34577777554333333333321 11 1225677666667888887743
Q ss_pred ccCCccCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 111 GKAVIRND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 111 ~~~~i~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
-....++ ++++.+|.....+ +..+++.
T Consensus 78 -~~~a~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 78 -MLAARGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred -HHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2223455 5667889876654 5666554
No 293
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=38.15 E-value=3.2e+02 Score=26.39 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCc--cccccCCe-ehHHHHHHHHHhCCC----cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhh
Q psy1482 35 PEPY--CLLPLVNK-CLLEYTLEHLHLSGI----EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMR 107 (627)
Q Consensus 35 ~~PK--~Llpi~g~-pli~~~l~~L~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr 107 (627)
..|+ .++|..|. ..|..+|+.+..... -+++|+.....+...+.+.+ +. .. .+.++..+...|.+.++.
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~--~~-~~-~v~~i~~~~~~g~~~a~n 102 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE--YA-DK-GVKLLRFPERRGKAAALN 102 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--Hh-hC-cEEEEEcCCCCChHHHHH
Confidence 4444 56777776 678888888866432 26777776555555555544 11 11 466666666677777776
Q ss_pred cccccCCccCC-EEEEeCCeecccc-HHHHHHHH
Q psy1482 108 DLDGKAVIRND-FILVSGDVVSNIN-LLSALKSF 139 (627)
Q Consensus 108 ~l~~~~~i~~d-fll~~gD~i~~~~-l~~~l~~h 139 (627)
... ...++| ++++.+|.+...+ +..+++..
T Consensus 103 ~gi--~~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 134 (251)
T cd06439 103 RAL--ALATGEIVVFTDANALLDPDALRLLVRHF 134 (251)
T ss_pred HHH--HHcCCCEEEEEccccCcCHHHHHHHHHHh
Confidence 332 223445 7778999887654 55555544
No 294
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.76 E-value=1.6e+02 Score=24.16 Aligned_cols=41 Identities=29% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHHH
Q psy1482 473 VDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVK 513 (627)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ 513 (627)
+..|.++++++..|.++...|...|-|-|.-...++.-=+.
T Consensus 22 v~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~ 62 (89)
T COG1937 22 VRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREVLEEHLK 62 (89)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999887555554444433
No 295
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=37.03 E-value=47 Score=28.96 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.8
Q ss_pred CeehHHHHHHHHHhCCCcEEEEE
Q psy1482 45 NKCLLEYTLEHLHLSGIEEIIVF 67 (627)
Q Consensus 45 g~pli~~~l~~L~~~gi~~i~vv 67 (627)
+.|-|+-.++.|...|+++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 57999999999999999988774
No 296
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=36.49 E-value=3.1e+02 Score=26.48 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=54.4
Q ss_pred ccccCCe-ehHHHHHHHHHhCCC----cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCC
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGI----EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAV 114 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~ 114 (627)
++|.-|. -.|..+|+.+...-- -+|+||.....+...+.++..... ...++..+......|.+.|+... -..
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~n~g--~~~ 82 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKACNYA--LAF 82 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHHHHH--HHh
Confidence 4566655 577888888876532 256666554344444444432100 12345555444455677777643 223
Q ss_pred ccCC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 115 IRND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 115 i~~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
.+++ ++++.+|.+...+ +..++..+.
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 4455 5557888876654 556666554
No 297
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=34.48 E-value=48 Score=26.98 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=30.0
Q ss_pred cccCCeehHHHHHHHHHh--CCCcEEEEEecC----ChHHHHHHHHh
Q psy1482 41 LPLVNKCLLEYTLEHLHL--SGIEEIIVFCTS----HVNQIRELVKR 81 (627)
Q Consensus 41 lpi~g~pli~~~l~~L~~--~gi~~i~vv~~~----~~~~i~~~l~~ 81 (627)
+-+++||++.|++..+.. .|.++|.|-... .+=.+.+.+.+
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~ 50 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRN 50 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHH
Confidence 457899999999999875 589999998763 23344455554
No 298
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.25 E-value=2.2e+02 Score=26.02 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=53.0
Q ss_pred cccCCe-ehHHHHHHHHHhCCCc--EEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCccC
Q psy1482 41 LPLVNK-CLLEYTLEHLHLSGIE--EIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIRN 117 (627)
Q Consensus 41 lpi~g~-pli~~~l~~L~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~~ 117 (627)
+|.-|. ..|..+|+.+...... +|+|+-+...+...+.++... -.+.++......|.+.++... ....++
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n~~--~~~a~~ 76 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE-----DKITYWISEPDKGIYDAMNKG--IALATG 76 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH-----hhcEEEEecCCcCHHHHHHHH--HHHcCC
Confidence 455554 5788999999876554 566665444455555555421 112333344556777776632 222345
Q ss_pred C-EEEEeCCeecc-ccHHHHHHHHHH
Q psy1482 118 D-FILVSGDVVSN-INLLSALKSFKK 141 (627)
Q Consensus 118 d-fll~~gD~i~~-~~l~~~l~~h~~ 141 (627)
+ ++++.+|.+.. -.+..++..+..
T Consensus 77 ~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 77 DIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred CEEEEeCCCcccCchHHHHHHHHHHh
Confidence 5 55667777654 446666644443
No 299
>PHA01399 membrane protein P6
Probab=33.15 E-value=2.4e+02 Score=26.31 Aligned_cols=62 Identities=6% Similarity=0.076 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHHHHHHhhcCcHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCCCChhhHhhhhhc
Q psy1482 531 THMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNK 599 (627)
Q Consensus 531 ~~~~~~~~~~~~ll~~~~~~~~~q~~~l~ale~~~~~~~~~~~~~~~il~~lYd~dil~Ee~il~W~~~ 599 (627)
+.+.+.+++--.++..|+..-=..+-++..+--...-.=.+.+.|..++|.|. +.|..|...
T Consensus 34 ka~vk~ikkivsvi~~fiskifs~ig~il~~il~~~~awf~fpa~IAIIKNLW-------EGIrnwv~e 95 (242)
T PHA01399 34 KAIVKIIKKIVSVILDFISKIFSKIGIILIIILIIIAAWFFFPAFAAFLQSAW-------ASFVNFFQT 95 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 45555666666666555543211111111111111111134567788888887 788888754
No 300
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=31.95 E-value=2e+02 Score=27.79 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=52.5
Q ss_pred ccccCCe-ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCccCC
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIRND 118 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~~d 118 (627)
++|.-|. ..|..+|+.|... ..+|+|+-+...+...+.++. + .+.++.. ...|.|.+... +......+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~--~-----~~~v~~~-~~~g~~~~~n~--~~~~a~~d 73 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE--Y-----GAKVYQR-WWDGFGAQRNF--ALELATND 73 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH--c-----CCEEEEC-CCCChHHHHHH--HHHhCCCC
Confidence 4555554 6788888888644 368888877555555555543 1 2344444 55677766552 22234455
Q ss_pred -EEEEeCCeeccccHHHHHHHH
Q psy1482 119 -FILVSGDVVSNINLLSALKSF 139 (627)
Q Consensus 119 -fll~~gD~i~~~~l~~~l~~h 139 (627)
++++.+|.+...++...+...
T Consensus 74 ~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 74 WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred EEEEEeCCcCcCHHHHHHHHHH
Confidence 666889988776654444333
No 301
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=31.53 E-value=31 Score=21.60 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.5
Q ss_pred hhHHHHHHhc
Q psy1482 608 SVEPFVKWLL 617 (627)
Q Consensus 608 ~~~~fi~WL~ 617 (627)
.+++||+||.
T Consensus 18 aak~fl~~L~ 27 (28)
T PF00123_consen 18 AAKKFLQWLM 27 (28)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 5889999995
No 302
>KOG1241|consensus
Probab=30.06 E-value=3.1e+02 Score=31.59 Aligned_cols=135 Identities=12% Similarity=0.153 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHhccCChhhHHHHHHhhHHhcCCChHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHhhHHHHHH
Q psy1482 467 LFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKN-KPDMDMKSFHTHMMSKINYFLPLFK 545 (627)
Q Consensus 467 ~F~~ev~~~l~~~~~~~~~~~~~~lei~~lr~a~n~~~~~v~~~v~~ail~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~ 545 (627)
.|+.+++.+|..+-.- . .......+.+.+.|+++.+. .++.--....+...-.+++....++
T Consensus 494 ~~y~~ii~~Ll~~tdr-~----------------dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 494 PFYEAIIGSLLKVTDR-A----------------DGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS 556 (859)
T ss_pred hhHHHHHHHHHhhccc-c----------------ccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887765311 1 11233456677888888875 3211011111122223444444444
Q ss_pred Hhhc--CcHHHHH-----HHHHHHHHHhhc--------cchHHHHHHHHHHHhhcCCCChhhHhhhhhcCC--chhHHhh
Q psy1482 546 NYIK--NESAQQD-----CLDAFEEFAEEN--------ESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE--PSSLRKS 608 (627)
Q Consensus 546 ~~~~--~~~~q~~-----~l~ale~~~~~~--------~~~~~~~~~il~~lYd~dil~Ee~il~W~~~~~--~~~~~~~ 608 (627)
.-+. .+++|+. +...||....+. +.++..|..+++. =+..++.||+|++=+.-.. .+.|.+-
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~ky 635 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKY 635 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHH
Confidence 2121 2234443 333333333331 1346666666666 5678999999998885443 5677887
Q ss_pred hHHHHHHhccc
Q psy1482 609 VEPFVKWLLEA 619 (627)
Q Consensus 609 ~~~fi~WL~ea 619 (627)
+..|+.+|..+
T Consensus 636 m~~f~pyL~~g 646 (859)
T KOG1241|consen 636 MPAFKPYLLMG 646 (859)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 303
>PRK11204 N-glycosyltransferase; Provisional
Probab=29.67 E-value=2.1e+02 Score=30.69 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=55.9
Q ss_pred ccccCCe-ehHHHHHHHHHhCCC--cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCcc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGI--EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIR 116 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~ 116 (627)
++|.-|. ..|..+++.+....- -+|+|+-....+...+.+++..- ...++.++......|.+.|+... -...+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~--~~~~v~~i~~~~n~Gka~aln~g--~~~a~ 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAA--QIPRLRVIHLAENQGKANALNTG--AAAAR 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHH--hCCcEEEEEcCCCCCHHHHHHHH--HHHcC
Confidence 4566565 678899999876542 36776655433333333332100 11246777655567778877632 22234
Q ss_pred CC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 117 ND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 117 ~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
.| ++++.+|.+...+ +..+++.+.
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHH
Confidence 55 6668999887665 555555543
No 304
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=29.49 E-value=3e+02 Score=25.41 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=51.6
Q ss_pred cccCCe--ehHHHHHHHHHhCCC--cEEEEEecCCh-HHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCc
Q psy1482 41 LPLVNK--CLLEYTLEHLHLSGI--EEIIVFCTSHV-NQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVI 115 (627)
Q Consensus 41 lpi~g~--pli~~~l~~L~~~gi--~~i~vv~~~~~-~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i 115 (627)
+|.-|. ..|..+|+.|...-. -+|+|+-+... ..+...++.... ....+.++..+...|.+.++... ....
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~a~n~g--~~~a 82 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA--QDPRIKVVFREENGGISAATNSA--LELA 82 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh--cCCCEEEEEcccCCCHHHHHHHH--HHhh
Confidence 454443 678888888876543 36777655322 233333332100 11235556566667777776522 2223
Q ss_pred cCC-EEEEeCCeecccc-HHHHHHHH
Q psy1482 116 RND-FILVSGDVVSNIN-LLSALKSF 139 (627)
Q Consensus 116 ~~d-fll~~gD~i~~~~-l~~~l~~h 139 (627)
+++ ++++..|.+...+ +..+++.+
T Consensus 83 ~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 83 TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 456 4556777776654 66666665
No 305
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=27.92 E-value=3.7e+02 Score=25.68 Aligned_cols=95 Identities=23% Similarity=0.206 Sum_probs=53.1
Q ss_pred ccccCCe-ehHHHHHHHHHhCCC----cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCC
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGI----EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAV 114 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~ 114 (627)
++|.-|. +.|..+|+.|..... -+|+|+-+...+...+.++.... ....+.++... ..+.+.|+... -..
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~--~~~~v~~i~~~-~~~~~~a~N~g--~~~ 79 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA--KDPRIRLIDNP-KRIQSAGLNIG--IRN 79 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh--cCCeEEEEeCC-CCCchHHHHHH--HHH
Confidence 4555554 678888999876644 37777766545544555443211 11346666543 34556665422 222
Q ss_pred ccCC-EEEEeCCeecccc-HHHHHHHH
Q psy1482 115 IRND-FILVSGDVVSNIN-LLSALKSF 139 (627)
Q Consensus 115 i~~d-fll~~gD~i~~~~-l~~~l~~h 139 (627)
.+.+ ++++.+|.+...+ +..+++.+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~ 106 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEAL 106 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 3555 5567788776554 56666544
No 306
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=27.87 E-value=2e+02 Score=22.78 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=22.4
Q ss_pred hhhHHHHHHhhHHhcCCChHHHHHHH
Q psy1482 486 CDNLTLEINSSRYAYNVTVKEVNFYM 511 (627)
Q Consensus 486 ~~~~~lei~~lr~a~n~~~~~v~~~v 511 (627)
.+.+...++..|.+.|+|-.+|...+
T Consensus 9 le~~~~~lk~~R~~lGLTQ~dvA~~l 34 (75)
T smart00352 9 LEAFAKTFKQRRIKLGFTQADVGLAL 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 45678889999999999999999883
No 307
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=27.73 E-value=2.9e+02 Score=26.31 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=54.9
Q ss_pred ccccCCe--ehHHHHHHHHHhCCCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCccC
Q psy1482 40 LLPLVNK--CLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIRN 117 (627)
Q Consensus 40 Llpi~g~--pli~~~l~~L~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i~~ 117 (627)
++|.-|. +.|..+|+.+......+|+|+.....+.....+..... ...+.++.. ...|.+.++... -...+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~---~~~~~v~~~-~~~g~~~a~n~g--~~~a~~ 78 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK---YGGIFVITV-PHPGKRRALAEG--IRHVTT 78 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc---CCcEEEEec-CCCChHHHHHHH--HHHhCC
Confidence 4555554 68999999998766678888877655555555533211 123444433 335556665421 122345
Q ss_pred C-EEEEeCCeecccc-HHHHHHHH
Q psy1482 118 D-FILVSGDVVSNIN-LLSALKSF 139 (627)
Q Consensus 118 d-fll~~gD~i~~~~-l~~~l~~h 139 (627)
+ ++++.+|.+...+ +..+++.+
T Consensus 79 d~v~~lD~D~~~~~~~l~~l~~~~ 102 (235)
T cd06434 79 DIVVLLDSDTVWPPNALPEMLKPF 102 (235)
T ss_pred CEEEEECCCceeChhHHHHHHHhc
Confidence 5 6667899887665 55555544
No 308
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.90 E-value=5e+02 Score=23.88 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=55.9
Q ss_pred ceEEEEEeCCCCCCCCcCCCCccccccCCeehHHHHHHHHHhCCC-cEEEEEec-CChHHHHHHHHhcccccCCeeEEEE
Q psy1482 17 VLQAVIVTDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGI-EEIIVFCT-SHVNQIRELVKRKEKSLVGTLITLI 94 (627)
Q Consensus 17 ~~~aVIlA~g~g~R~~Pl~~PK~Llpi~g~pli~~~l~~L~~~gi-~~i~vv~~-~~~~~i~~~l~~~~~~~~~~~v~~i 94 (627)
..+..|+.+|.+.- ++.+ .+-++.+++.+...|- ..-.++++ +..+++.+.+.... + +.+
T Consensus 22 ~~riAvfID~~Nv~------~~~~-----~~d~~~i~~~ls~~G~i~~~R~Y~~a~a~~~l~~~l~~~G-----f--~pv 83 (160)
T TIGR00288 22 EKKIGLLVDGPNML------RKEF-----NIDLDEIREILSEYGDIKIGKVLLNQYASDKLIEAVVNQG-----F--EPI 83 (160)
T ss_pred CCcEEEEEeCCccC------hhhh-----ccCHHHHHHHHHhcCCeEEEEEEechhccHHHHHHHHHCC-----c--eEE
Confidence 44566777765431 1211 1447889999998882 22223344 33456667776522 2 232
Q ss_pred eCCCCcchh---hhhhcccccCCccCCEEEEeCCeeccccHHHHHHHHHHH
Q psy1482 95 VSDGCYSFG---DVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKI 142 (627)
Q Consensus 95 ~~~~~~~~g---dalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~~h~~~ 142 (627)
........+ |||..++.. .+ +.|+|++|| -|+.++++.-+++
T Consensus 84 ~~kG~~Dv~laIDame~~~~~-~i-D~~vLvSgD----~DF~~Lv~~lre~ 128 (160)
T TIGR00288 84 IVAGDVDVRMAVEAMELIYNP-NI-DAVALVTRD----ADFLPVINKAKEN 128 (160)
T ss_pred EecCcccHHHHHHHHHHhccC-CC-CEEEEEecc----HhHHHHHHHHHHC
Confidence 222223332 333322211 11 459999999 7999999887765
No 309
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=26.76 E-value=71 Score=20.39 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.3
Q ss_pred HHHHHHhhcCCCChhhHhh
Q psy1482 577 KLLHKLYDKDILSEDIVTK 595 (627)
Q Consensus 577 ~il~~lYd~dil~Ee~il~ 595 (627)
..|+.||+.++++++.+.+
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 5789999999999997753
No 310
>PRK10018 putative glycosyl transferase; Provisional
Probab=26.61 E-value=4.8e+02 Score=26.33 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=55.5
Q ss_pred cccCCe-ehHHHHHHHHHhCCCc--EEEEEecC--ChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCc
Q psy1482 41 LPLVNK-CLLEYTLEHLHLSGIE--EIIVFCTS--HVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVI 115 (627)
Q Consensus 41 lpi~g~-pli~~~l~~L~~~gi~--~i~vv~~~--~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i 115 (627)
+|.-|. ..|..+|+.+...-.. +|+|+-.. ..+.+++++.... ...|.++..+...|.+.|+.. +-...
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~----~~ri~~i~~~~n~G~~~a~N~--gi~~a 84 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN----DPRITYIHNDINSGACAVRNQ--AIMLA 84 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC----CCCEEEEECCCCCCHHHHHHH--HHHHc
Confidence 455444 6678899988765443 66666442 2345566665421 235777877777788877652 22223
Q ss_pred cCC-EEEEeCCeecccc-HHHHHHHHH
Q psy1482 116 RND-FILVSGDVVSNIN-LLSALKSFK 140 (627)
Q Consensus 116 ~~d-fll~~gD~i~~~~-l~~~l~~h~ 140 (627)
+++ ++++.+|.+...+ +..+++...
T Consensus 85 ~g~~I~~lDaDD~~~p~~l~~~~~~~~ 111 (279)
T PRK10018 85 QGEYITGIDDDDEWTPNRLSVFLAHKQ 111 (279)
T ss_pred CCCEEEEECCCCCCCccHHHHHHHHHH
Confidence 455 5567777766554 566666443
No 311
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=26.60 E-value=3.6e+02 Score=25.34 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=53.1
Q ss_pred ccccCCe-ehHHHHHHHHHhCC---CcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCCc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSG---IEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVI 115 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~i 115 (627)
++|.-|. ..|..+|+.+...- --+|+||-....+...+.++...- ..-.+.++......|.+.|+... -...
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~--~~~~i~~~~~~~n~G~~~a~n~g--~~~a 77 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK--EYPRVRLIVRPGKRGLGSAYIEG--FKAA 77 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH--hCCceEEEecCCCCChHHHHHHH--HHHc
Confidence 4566665 56888888887642 457777765433333333322100 01235666666777888777632 2223
Q ss_pred cCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 116 RND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 116 ~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
.++ ++++.+|.....+ +..+++.
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~ 102 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEA 102 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 445 5567899876554 5555554
No 312
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=25.65 E-value=64 Score=31.87 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=11.4
Q ss_pred EEEEEeCCCCCCCCcC
Q psy1482 19 QAVIVTDTFNRNFFPV 34 (627)
Q Consensus 19 ~aVIlA~g~g~R~~Pl 34 (627)
.-||+|.|||+||..+
T Consensus 31 ~tiliA~Gf~rrmdh~ 46 (294)
T PF02273_consen 31 NTILIAPGFARRMDHF 46 (294)
T ss_dssp -EEEEE-TT-GGGGGG
T ss_pred CeEEEecchhHHHHHH
Confidence 4799999999999865
No 313
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=25.58 E-value=1.2e+02 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHhhcCcHHHHHHHHHHHHHHhhccchHHHHHH
Q psy1482 536 KINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGK 577 (627)
Q Consensus 536 ~~~~~~~ll~~~~~~~~~q~~~l~ale~~~~~~~~~~~~~~~ 577 (627)
+.+.+-.+|..|..+..+..++...+..+...++.+..-|..
T Consensus 3 ~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 3 VYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp HHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345566677777776666667777777777777766555543
No 314
>smart00070 GLUCA Glucagon like hormones.
Probab=24.46 E-value=52 Score=20.44 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.1
Q ss_pred hhHHHHHHhc
Q psy1482 608 SVEPFVKWLL 617 (627)
Q Consensus 608 ~~~~fi~WL~ 617 (627)
.+++|+.||.
T Consensus 18 ~ar~fl~~L~ 27 (27)
T smart00070 18 AAKKFLQWLM 27 (27)
T ss_pred HHHHHHHHhC
Confidence 5888999984
No 315
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=24.42 E-value=3.6e+02 Score=24.47 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=48.8
Q ss_pred cccCCe-ehHHHHHHHHHhC-----CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccCC
Q psy1482 41 LPLVNK-CLLEYTLEHLHLS-----GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAV 114 (627)
Q Consensus 41 lpi~g~-pli~~~l~~L~~~-----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~~ 114 (627)
+|.-|. -.|..+|+.|... ..-+|+|+-+...+...+.++.. .....++.++......|.+.|++.. ...
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~~~~i~~i~~~~n~G~~~a~n~g--~~~ 78 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILREL--AARDPRVKVIRLSRNFGQQAALLAG--LDH 78 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHH--HhhCCCEEEEEecCCCCcHHHHHHH--HHh
Confidence 444444 3455566655432 23477777664333323333221 0011246666655667888887632 222
Q ss_pred ccCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 115 IRND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 115 i~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
..++ ++++.+|.....+ +..+++.
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3444 6667889876654 5666554
No 316
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.74 E-value=1.3e+02 Score=31.81 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=49.2
Q ss_pred HHHHHHhCC-CcEEEEEecCCh--HHHHHHHHhcccccCCeeEEEE--eCCCCcchhhhhhcccc-cCCccCCEEEEeCC
Q psy1482 52 TLEHLHLSG-IEEIIVFCTSHV--NQIRELVKRKEKSLVGTLITLI--VSDGCYSFGDVMRDLDG-KAVIRNDFILVSGD 125 (627)
Q Consensus 52 ~l~~L~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~~v~~i--~~~~~~~~gdalr~l~~-~~~i~~dfll~~gD 125 (627)
++..+.+.+ ++.++++++.|. +....++..-.-..+.....+. .+.-...+|.++..+.. ..-.+-|.+|+.||
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGD 101 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGD 101 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 455666665 999999999776 7777777652211122223333 23333455555553311 01134689999999
Q ss_pred eeccccHHHHHHHHHH
Q psy1482 126 VVSNINLLSALKSFKK 141 (627)
Q Consensus 126 ~i~~~~l~~~l~~h~~ 141 (627)
+-+ .|...+..++.
T Consensus 102 T~t--~lA~alaa~~~ 115 (383)
T COG0381 102 TNT--TLAGALAAFYL 115 (383)
T ss_pred cch--HHHHHHHHHHh
Confidence 765 44433444443
No 317
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=22.53 E-value=4.9e+02 Score=23.41 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=48.3
Q ss_pred ccccCCe-ehHHHHHHHHHhC--CCcEEEEEecCChHHHHHHHHhcccccCCeeEEEEeC-CCCcchhhhhhcccccCCc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLS--GIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS-DGCYSFGDVMRDLDGKAVI 115 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~-~~~~~~gdalr~l~~~~~i 115 (627)
++|.-|. ..|..+|+.+... ..-+|+|+-....+...+.++...-. .+.++..+.. +...+.+.++.. +....
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~--g~~~a 78 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQ-FPIPIKHVWQEDEGFRKAKIRNK--AIAAA 78 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhh-cCCceEEEEcCCcchhHHHHHHH--HHHHh
Confidence 3555554 6788999999764 23577777655455444444431100 1223333332 222344444431 11223
Q ss_pred cCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 116 RND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 116 ~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
+++ ++++.+|.+...+ +..+++.
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHHHHH
Confidence 445 6667888876554 4444443
No 318
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.75 E-value=4.9e+02 Score=25.67 Aligned_cols=116 Identities=10% Similarity=0.008 Sum_probs=64.3
Q ss_pred cCCceEEEEEeCCCCCCCCcC-CCCccccc-cCCe---ehHHHHHHHHHhCCCcEEEEEecCC---hHHHHHHHHhcccc
Q psy1482 14 KDEVLQAVIVTDTFNRNFFPV-PEPYCLLP-LVNK---CLLEYTLEHLHLSGIEEIIVFCTSH---VNQIRELVKRKEKS 85 (627)
Q Consensus 14 ~~~~~~aVIlA~g~g~R~~Pl-~~PK~Llp-i~g~---pli~~~l~~L~~~gi~~i~vv~~~~---~~~i~~~l~~~~~~ 85 (627)
+...+.+|+.+...|+-+.-- ..-..+.. -.|. .-..=+++.|...|+++|.|++.|- .+++.+|+.+.
T Consensus 68 ~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~--- 144 (239)
T TIGR02990 68 PDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR--- 144 (239)
T ss_pred CCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC---
Confidence 335777888888777653211 10011111 0122 3456677888888999999999984 47777888762
Q ss_pred cCCeeEEEEe-----------CCCCcchhhhhhcccccCCccCCEEEEeCCeeccccHHHHHH
Q psy1482 86 LVGTLITLIV-----------SDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALK 137 (627)
Q Consensus 86 ~~~~~v~~i~-----------~~~~~~~gdalr~l~~~~~i~~dfll~~gD~i~~~~l~~~l~ 137 (627)
++.|.-+. .-+.....++++.+. .-+-|-++++|-.+...++-+-++
T Consensus 145 --G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~---~~~aDAifisCTnLrt~~vi~~lE 202 (239)
T TIGR02990 145 --GFEIVNFTCLGLTDDREMARISPDCIVEAALAAF---DPDADALFLSCTALRAATCAQRIE 202 (239)
T ss_pred --CcEEeeeeccCCCCCceeeecCHHHHHHHHHHhc---CCCCCEEEEeCCCchhHHHHHHHH
Confidence 23333221 112223333444321 124578888887665555555444
No 319
>KOG2023|consensus
Probab=21.74 E-value=6.9e+02 Score=28.60 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=24.7
Q ss_pred HHHHHhhcCc-HHHHHHHHHHHHHHhhc-cchHHHHHHHHHHH
Q psy1482 542 PLFKNYIKNE-SAQQDCLDAFEEFAEEN-ESLSVVAGKLLHKL 582 (627)
Q Consensus 542 ~ll~~~~~~~-~~q~~~l~ale~~~~~~-~~~~~~~~~il~~l 582 (627)
+++++.+.++ +-|-+...|+-.+-.+. +.+.+++.+||+.|
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQL 522 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4555555444 66888888877775542 33555666666554
No 320
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=21.51 E-value=3.9e+02 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.1
Q ss_pred cCCCChhhHhhhh
Q psy1482 585 KDILSEDIVTKWF 597 (627)
Q Consensus 585 ~dil~Ee~il~W~ 597 (627)
..|++||+|..=.
T Consensus 63 ~gVLSEDaiyn~l 75 (90)
T PF14131_consen 63 CGVLSEDAIYNAL 75 (90)
T ss_pred cCccCchHHHHHH
Confidence 5799999987544
No 321
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=21.11 E-value=5.7e+02 Score=24.67 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=48.7
Q ss_pred cccCCe-ehHHHHHHHHHhC----CCcEEEEEecCChHHHHHHHHhc--ccccCCeeEEEEeCCCCcchhhhhhcccccC
Q psy1482 41 LPLVNK-CLLEYTLEHLHLS----GIEEIIVFCTSHVNQIRELVKRK--EKSLVGTLITLIVSDGCYSFGDVMRDLDGKA 113 (627)
Q Consensus 41 lpi~g~-pli~~~l~~L~~~----gi~~i~vv~~~~~~~i~~~l~~~--~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~ 113 (627)
+|.-|. .-|..+++.+... .--+|+|+-....+...+.+++. .+ ....+.++......|.|.|+.... .
T Consensus 15 Ip~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~--~~~~v~~~~~~~n~G~~~a~n~g~--~ 90 (243)
T PLN02726 15 VPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY--GEDRILLRPRPGKLGLGTAYIHGL--K 90 (243)
T ss_pred EccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCcEEEEecCCCCCHHHHHHHHH--H
Confidence 444443 4455555555431 22367777654333333333321 11 113456665556677787776332 2
Q ss_pred CccCC-EEEEeCCeecccc-HHHHHHHH
Q psy1482 114 VIRND-FILVSGDVVSNIN-LLSALKSF 139 (627)
Q Consensus 114 ~i~~d-fll~~gD~i~~~~-l~~~l~~h 139 (627)
..+++ ++++.+|...+.+ +..+++..
T Consensus 91 ~a~g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 91 HASGDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred HcCCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 23455 5578999886654 45666544
No 322
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.78 E-value=4.4e+02 Score=24.35 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=51.8
Q ss_pred ccccCCe-ehHHHHHHHHHhCCC--cEEEEEecCCh----HHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhccccc
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGI--EEIIVFCTSHV----NQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGK 112 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi--~~i~vv~~~~~----~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~ 112 (627)
++|.-|. ..|..+|+.+..... -+|+|+-.... +.++++... + +..+.++......|.+.++... .
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~--~---~~~~~~~~~~~~~G~~~~~n~g--~ 75 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDK--D---PFIIILIRNGKNLGVARNFESL--L 75 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhc--C---CceEEEEeCCCCccHHHHHHHH--H
Confidence 4566665 478889999876543 36666655322 333333322 1 1345556666667777776532 2
Q ss_pred CCccCC-EEEEeCCeecccc-HHHHHHH
Q psy1482 113 AVIRND-FILVSGDVVSNIN-LLSALKS 138 (627)
Q Consensus 113 ~~i~~d-fll~~gD~i~~~~-l~~~l~~ 138 (627)
...+++ ++++..|.+...+ +..+++.
T Consensus 76 ~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 223455 5556778766554 5666554
No 323
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=20.63 E-value=1.2e+03 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=29.4
Q ss_pred cCChhhHHHHHHhhHHhcCCC----hHHHHHHHHHHHHHhhc
Q psy1482 483 KLVCDNLTLEINSSRYAYNVT----VKEVNFYMVKAILVVKN 520 (627)
Q Consensus 483 ~~~~~~~~lei~~lr~a~n~~----~~~v~~~v~~ail~~~~ 520 (627)
+++.++..+=|..+|..|+.+ .++-+..++..+++++.
T Consensus 437 ~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~ 478 (840)
T PF04147_consen 437 GYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHIL 478 (840)
T ss_pred cCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 677888999999999999986 45666666677777765
No 324
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.43 E-value=1.4e+02 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=19.2
Q ss_pred eehHHHHHHHHHhCCCcEEEEEe
Q psy1482 46 KCLLEYTLEHLHLSGIEEIIVFC 68 (627)
Q Consensus 46 ~pli~~~l~~L~~~gi~~i~vv~ 68 (627)
.|-++-.++.|...|+++|+|+-
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEe
Confidence 68888888888888888887764
No 325
>KOG4511|consensus
Probab=20.30 E-value=6.6e+02 Score=25.13 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.4
Q ss_pred cCcHHHHHHHHHHHHHHh
Q psy1482 549 KNESAQQDCLDAFEEFAE 566 (627)
Q Consensus 549 ~~~~~q~~~l~ale~~~~ 566 (627)
++-+.|+++|..||..|.
T Consensus 118 kNIElQLQAl~~Ie~~ng 135 (335)
T KOG4511|consen 118 KNIELQLQALQMIEFMNG 135 (335)
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 455889999999998654
No 326
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=20.13 E-value=6.6e+02 Score=22.81 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=54.4
Q ss_pred ccccCCe-ehHHHHHHHHHhCCC----cEEEEEecCChHHHHHHHHhcccccCCeeEEEEeCCCCcchhhhhhcccccC-
Q psy1482 40 LLPLVNK-CLLEYTLEHLHLSGI----EEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKA- 113 (627)
Q Consensus 40 Llpi~g~-pli~~~l~~L~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~~v~~i~~~~~~~~gdalr~l~~~~- 113 (627)
++|.-|. ..|..+|+.+.+..- -+|+|+.....+...+.+... . ..+.........|.+.|+.......
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~--~---~~~~~~~~~~~~gk~~aln~g~~~a~ 76 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA--G---ATVLERHDPERRGKGYALDFGFRHLL 76 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc--C---CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4677765 788888999876542 467777665555555555442 1 2233322344557777766432111
Q ss_pred --CccCC-EEEEeCCeeccccH-HHHHHHHH
Q psy1482 114 --VIRND-FILVSGDVVSNINL-LSALKSFK 140 (627)
Q Consensus 114 --~i~~d-fll~~gD~i~~~~l-~~~l~~h~ 140 (627)
--+.+ ++++-+|.....+. ..++..+.
T Consensus 77 ~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~ 107 (183)
T cd06438 77 NLADDPDAVVVFDADNLVDPNALEELNARFA 107 (183)
T ss_pred hcCCCCCEEEEEcCCCCCChhHHHHHHHHHh
Confidence 01244 66789999877654 55555443
Done!