RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1482
(627 letters)
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of epsilon subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
epsilon shares sequence similarity with gamma subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 217
Score = 192 bits (490), Expect = 2e-57
Identities = 84/217 (38%), Positives = 130/217 (59%), Gaps = 9/217 (4%)
Query: 18 LQAVIVTDTFNRNFFPVP--EPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
LQAV++ D+FNR F P+ +P CLLPL N L++YTLE L L+G+EE+ VFC SH +QI
Sbjct: 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQI 60
Query: 76 RELVKRKEKSLVGT---LITLIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINL 132
+E +++ + S + ++ +I+S+ C S GD +RDLD K +IR DFILVSGDVVSNI+L
Sbjct: 61 KEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDL 120
Query: 133 LSALKSFKKINSMDSGAVALVLYKKKG--QSKSSWKEDLIVAYECDSKKLLMHQTPQDNQ 190
L+ K+ D A+ ++ K+ E+ ++A + + +LL ++ ++
Sbjct: 121 KEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSK 180
Query: 191 KKVNIPMENILLY--SKLEICAHLASTGIMICSPAVP 225
+ + + LL S++EI L I ICSP V
Sbjct: 181 YRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217
>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic
translation initiation factor 2B epsilon. eIF2B is a
heteropentameric complex which functions as a guanine
nucleotide exchange factor in the recycling of eIF-2
during the initiation of translation in eukaryotes. The
epsilon and gamma subunits are sequence similar and both
are essential in yeast. Epsilon appears to be the
catalytically active subunit, with gamma enhancing its
activity. The C-terminal domain of the eIF2B epsilon
subunit contains bipartite motifs rich in acidic and
aromatic residues, which are responsible for the
interaction with eIF2. The structure of the domain
resembles that of a set of concatenated HEAT repeats.
Length = 169
Score = 171 bits (436), Expect = 2e-50
Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 463 DDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAIL-VVKNK 521
DD S F++EVV+SL R EE DN LEINS R AYNVT +V +VKA+L ++
Sbjct: 1 DDESDFHSEVVESLERALEENHSVDNAILEINSLRMAYNVTDHDVRRAVVKALLELILEV 60
Query: 522 PDMDMKSFHTHMMSKINYFLPLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHK 581
+ ++ + PL +NY+K++ Q + L A EEF E+E + KLLH
Sbjct: 61 SSTSTAELLEALKKLLSKWGPLLENYVKSQDDQVELLLALEEFCLESEEGGPLFAKLLHA 120
Query: 582 LYDKDILSEDIVTKWFNKLEPSS------LRKSVEPFVKWLLEADEESE 624
LYD DIL E+ + +W+ + + + +R+ V+ F++WL EA+EES+
Sbjct: 121 LYDLDILEEEAILEWWEEPDAGADEEMKKVRELVKKFIEWLEEAEEESD 169
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma, subunits
of eukaryotic translation initiators, is a subfamily of
glycosyltranferase 2 and is predicted to have
glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes such
as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 216
Score = 158 bits (402), Expect = 7e-45
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
QAV++ D F F P+ P LLP+ N L++YTLE L +G+EE+ V C H I
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 76 RE-LVKRKEKSLVGTLI-TLIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLL 133
E L+K K SL +I +I SD C S GD +R D + +IR+DF+L+S D+VSNI L
Sbjct: 61 IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSDFLLLSCDLVSNIPLS 120
Query: 134 SALKSFKKINSMDSGAVALVLYKK---KGQSKSSWKEDLIVAYECDSKKLLMH-QTPQDN 189
L+ +K + + ++L QSK + +ED+I + LL+H + D
Sbjct: 121 ELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180
Query: 190 QKKVNIPMENILLYSKLEICAHLASTGIMICSPAVP 225
++ I + + + I L I ICSP V
Sbjct: 181 DLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 120 bits (303), Expect = 9e-30
Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 74/405 (18%)
Query: 19 QAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIR 76
+AVI+ + P+ + P LLP+ K L+EY LE L +G+EEI++ QI
Sbjct: 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIE 62
Query: 77 ELVKRKEKSLVGTLITLIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSAL 136
E E V IT +V +++ + +DF++++GDV+++++L L
Sbjct: 63 EYFGDGEGLGVR--ITYVVEKEPLGTAGALKNAL-DLLGGDDFLVLNGDVLTDLDLSELL 119
Query: 137 KSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQDNQKKVNIP 196
+ KK GA+A + + S + +V + +++
Sbjct: 120 EFHKK-----KGALATIALTRVL-DPSEFG---VVETDDGDGRVV--------------- 155
Query: 197 MENILLYSKLEICA-HLASTGIMICSPAVPPLFSDN--FDF--------QTQEHFIKGVL 245
E +L + GI I P V FDF + + G +
Sbjct: 156 --EFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYV 213
Query: 246 INEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAE 305
LD + E A+ ++ + + E
Sbjct: 214 FEGYWLD-------IGTPE---------DLLEANELLL---------RGDGKSPLGPIEE 248
Query: 306 DVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDN 364
V+I +++ + VVIG G+ IG + + +IG TIG+ V ++ S + DNV I
Sbjct: 249 PVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHG 308
Query: 365 CEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409
+ S+ +GE+ K+ ++G V+ N L GV +
Sbjct: 309 SYIGDSI------IGENCKIGASLIIGDVVIGINSEILPGVVVGP 347
Score = 38.1 bits (89), Expect = 0.011
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIED 363
++V+IG S + + IGE IG + + +IG N I V + + ++ +IED
Sbjct: 301 DNVVIGHGSYIGDSI-IGENCKIGASLIIGDVVIGINSEILPGVVVGPGSVVESGEIED 358
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B epsilon subunit contains
an N-terminal domain that resembles a
dinucleotide-binding Rossmann fold, a central LbH domain
containing 4 turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
unknown function that is present in eIF-4 gamma, eIF-5,
and eIF-2B epsilon. The epsilon and gamma subunits form
the catalytic subcomplex of eIF-2B, which binds eIF2 and
catalyzes guanine nucleotide exchange.
Length = 79
Score = 103 bits (258), Expect = 1e-26
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
VIG G+SIGE T + + +IGRNC IG NV ++ SY++D+V IED C + S+++ +G
Sbjct: 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG 60
Query: 380 EHSKLLNGCLLGTGVLIG 397
+ + G L+ GV+IG
Sbjct: 61 KGCTIPPGSLISFGVVIG 78
Score = 29.9 bits (68), Expect = 0.62
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQLSHCI------IGRNCTIGSNVRLEKSYLFDNVKIE 362
IGK V+ I + +I + + H I IG+ CTI + S+ V I
Sbjct: 25 IGKNVVIDNSY-IWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLI--SF---GVVIG 78
Query: 363 D 363
D
Sbjct: 79 D 79
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate adenylyltransferase,
mannose-1-phosphate guanylyltransferase, and the
eukaryotic translation initiation factor eIF-2B
subunits, epsilon and gamma. Most members of this family
contains an N-terminal catalytic domain that resembles a
dinucleotide-binding Rossmann fold, followed by a LbH
fold domain with at least 4 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the C-terminus.
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 79
Score = 81.1 bits (201), Expect = 5e-19
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
+IGE + IGEN + + +IG N IG V + S L DNV I N + S++ N +G
Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIG 60
Query: 380 EHSKLLNGCLLGTGVLIGN 398
E+ +++N C++G V++ +
Sbjct: 61 ENVRVVNLCIIGDDVVVED 79
Score = 35.3 bits (82), Expect = 0.008
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE-KSYLFDN 358
N+ + + V I S+L V IG S I IIG N IG NVR+ + D+
Sbjct: 22 NVRIGDGVTI-TNSILMDNVTIGANSVI------VDSIIGDNAVIGENVRVVNLCIIGDD 74
Query: 359 VKIED 363
V +ED
Sbjct: 75 VVVED 79
>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon,
eIF-4 gamma and eIF-5.
Length = 83
Score = 80.0 bits (198), Expect = 2e-18
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 542 PLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE 601
PL K K+E Q + L A EEF E E L + K+L LYD DIL E+ + KW+ K
Sbjct: 2 PLLKFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAV 61
Query: 602 P----SSLRKSVEPFVKWLLEA 619
+RK+ +PFV WL EA
Sbjct: 62 SAEGKKKVRKNAKPFVTWLQEA 83
>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation
initiation factor 5. eIF5 functions as a GTPase
acceleration protein (GAP), as well as a GDP
dissociation inhibitor (GDI) during translational
initiation in eukaryotes. The structure of this
C-terminal domain resembles that of a set of
concatenated HEAT repeats.
Length = 157
Score = 76.9 bits (190), Expect = 2e-16
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 542 PLFKNYIKNESAQQDCLDAFEEFAEEN--ESLSVVAGKLLHKLYDKDILSEDIVTKWFNK 599
L + +E AQ+ L E F ++ E L V +L LYD DIL E+++ KW+ K
Sbjct: 66 ALLLKLVTDEKAQKALLGGIERFCGKHSPELLKKVP-LILKALYDNDILEEEVILKWYEK 124
Query: 600 LEP--------SSLRKSVEPFVKWLLEADEESE 624
+ +RK+ EPFV+WL EA+EE E
Sbjct: 125 VSKKYVSKEKSKKVRKAAEPFVEWLEEAEEEEE 157
>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B gamma subunit contains an
N-terminal domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH domain with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The epsilon and gamma subunits form the catalytic
subcomplex of eIF-2B, which binds eIF2 and catalyzes
guanine nucleotide exchange.
Length = 81
Score = 73.8 bits (182), Expect = 2e-16
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
++GE + +GE T + +IG NC IG V++ + DNV IED C + ++ +G
Sbjct: 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60
Query: 380 EHSKLLNGCLLGTGVLIGNKT 400
E KL + CL+G+G + T
Sbjct: 61 EKCKLKD-CLVGSGYRVEAGT 80
Score = 27.9 bits (63), Expect = 3.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 307 VLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE 351
V I L + +IG G+ IGE +L ++C +GS R+E
Sbjct: 40 VTIEDGCTL-ENCIIGNGAVIGEKCKL------KDCLVGSGYRVE 77
>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon. This domain of
unknown function is found at the C-terminus of several
translation initiation factors.
Length = 75
Score = 69.6 bits (171), Expect = 6e-15
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 553 AQQDCLDAFEEF-AEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLEPSS------L 605
AQ+D L A E F +EN L + K+L LYD DIL E+ + KW+ K + +
Sbjct: 2 AQKDLLGALERFCGKENPELIKLLPKILKLLYDLDILEEEAILKWYEKSKKVDGEGSKKV 61
Query: 606 RKSVEPFVKWLLEA 619
RK +PFV WL EA
Sbjct: 62 RKQAKPFVTWLEEA 75
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 68.8 bits (169), Expect = 3e-13
Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 24/219 (10%)
Query: 18 LQAVIVTDTFNRNFFPV--PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCT-SHVNQ 74
QAVI+ +P+ P LLP+ NK ++ Y L+ L +G E++IV +
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60
Query: 75 IRELVKRKEKSLVGTLIT-LIVSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLL 133
I ++ +L L IV D D +R + K I+ DF+++S D+++++ L+
Sbjct: 61 ISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKK--IKKDFLVLSCDLITDLPLI 118
Query: 134 SALKSFKKINSMDSGAVALVLY---------KKKGQSKSSWKEDLIVAYECDSKKLLMHQ 184
+ + ++ ++ ++LY KG+SK + + D+I + + L+
Sbjct: 119 ELVDLHRSHDA----SLTVLLYPPPVSSEQKGGKGKSKKADERDVIGL--DEKTQRLLFI 172
Query: 185 TPQDNQKKVNIPMENILL--YSKLEICAHLASTGIMICS 221
T +++ + + LL + ++ I L + I
Sbjct: 173 TSEEDLDEDLE-LRKSLLKRHPRVTITTKLLDAHVYIFK 210
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Length = 205
Score = 62.4 bits (153), Expect = 3e-11
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNV---- 348
N + E V+IG V+ VVIG+G IG++ + CIIG I S
Sbjct: 13 NAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGS 72
Query: 349 ----------RLEKSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLLG 391
K V I D+ E+ R L +T +G+ +K+ N +
Sbjct: 73 DGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDR-GALG-DTVIGDGTKIDNLVQIA 130
Query: 392 TGVLIGNKTCLSG 404
V IG ++
Sbjct: 131 HNVRIGENCLIAA 143
Score = 59.3 bits (145), Expect = 4e-10
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKI 361
+ E+V IG VIGEG IG+ + +IG IG + + NV I
Sbjct: 4 IGENVSIGP------NAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCV-----IHPNVTI 52
Query: 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLG 391
+ C +G+ + +G ++G
Sbjct: 53 YEGCI-----------IGDRVIIHSGAVIG 71
Score = 39.3 bits (93), Expect = 0.002
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 336 CIIGRNCTIGSNVRLEK-------SYLFDNVKIEDNCEV-RLSVLSYNTGVGEHSKLLNG 387
IG N +IG N + + + V I D + V+ N + E + +
Sbjct: 2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDR 61
Query: 388 CLLGTGVLIG 397
++ +G +IG
Sbjct: 62 VIIHSGAVIG 71
Score = 34.3 bits (80), Expect = 0.12
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNC------TIGSNVRL 350
N + +A +V IG+ ++ QV I ++IG+N IIG TIG V +
Sbjct: 125 NLVQIAHNVRIGENCLIAAQVGIAGSTTIGDN-----VIIGGQVGIAGHLTIGDGVVI 177
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 61.1 bits (149), Expect = 1e-10
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96
P LLP+ K +LEY +E L +GI+EII+ QI E K V I +V
Sbjct: 20 PKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVN--IEYVVQ 77
Query: 97 DGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSMDSGAVALVL 154
+ +R+ + + +DF++V+GDV+++++L L+ ++ GA A +
Sbjct: 78 EEPLGTAGAVRNAE-DFLGDDDFLVVNGDVLTDLDLSELLRFHRE-----KGADATIA 129
>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 61.5 bits (150), Expect = 4e-10
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 30/133 (22%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRL-- 350
N+ + V+IG+ V+ VIGE IG+ T + + +IG N I S +
Sbjct: 123 NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGA 182
Query: 351 ------------EKSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLLG 391
K V I D+ E+ R L +T +GE K+ N +G
Sbjct: 183 DGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDR-GALD-DTVIGEGVKIDNLVQIG 240
Query: 392 TGVLIGNKTCLSG 404
V IG ++G
Sbjct: 241 HNVRIGEHCIIAG 253
Score = 61.2 bits (149), Expect = 4e-10
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 21/122 (17%)
Query: 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIE 362
IGK + VVIG G IGEN + + +IG N IG + NV I
Sbjct: 109 DPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHP-----NVTIY 163
Query: 363 DNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSAGA----DEVDDG 418
N +G + + +G ++G T + VK+P G D+V+ G
Sbjct: 164 HNVV-----------IGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIG 212
Query: 419 NN 420
N
Sbjct: 213 AN 214
Score = 57.3 bits (139), Expect = 9e-09
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGEN--------------TQLSHCIIGRNCTI 344
+ + +V I V+ V+I G+ IG + Q+ IIG + I
Sbjct: 152 DGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEI 211
Query: 345 GSNVRLEKSYLFD-----NVKIED------NCEV-RLSVLSYNTGVGEHSKLLNGCLLGT 392
G+N +++ L D VKI++ N + +++ G+ K+ ++G
Sbjct: 212 GANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGG 271
Query: 393 GVLIGNKTC 401
V I
Sbjct: 272 QVGIAGHLE 280
Score = 32.3 bits (74), Expect = 0.79
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFD 357
N + + +V IG+ ++ QV I IG+ IG V +
Sbjct: 234 DNLVQIGHNVRIGEHCIIAGQVGIAGSVK-----------IGKYVIIGGQVG-----IAG 277
Query: 358 NVKIEDN 364
+++I D
Sbjct: 278 HLEIGDG 284
Score = 28.8 bits (65), Expect = 9.1
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSY 354
+A V IGK ++ QV I IG+ I R+ + +++
Sbjct: 257 IAGSVKIGKYVIIGGQVGIAGHLEIGDGVT----IGARSG-VMASITEPGYS 303
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH trimer.
Length = 193
Score = 58.6 bits (143), Expect = 7e-10
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
Y+ DV IG V+ V++ EG +IG +C IG N ++ S + D
Sbjct: 8 ETTYIDGDVEIGVDVVIDPGVIL-EG----------KTVIGEDCVIGPNCVIKDSTIGDG 56
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
V I+ + + +V+ VG + L G +LG GV IGN
Sbjct: 57 VVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGN 96
Score = 33.5 bits (78), Expect = 0.19
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKI 361
+ + V+I +SV+ + VIG G+++G L ++G IG+ V ++KS + + K
Sbjct: 53 IGDGVVIKASSVI-EGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKA 111
Query: 362 EDNCEVRLSVLSY--NTGVGEHS 382
+ LSY + +GE
Sbjct: 112 --------NHLSYLGDAEIGEGV 126
Score = 30.1 bits (69), Expect = 2.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 314 VLKQQVVIGEGSSIGENTQLSHCI----IGRNCTIGS 346
V K + VIG+ IG N+QL + IG TI +
Sbjct: 140 VNKHRTVIGDNVFIGSNSQL---VAPVTIGDGATIAA 173
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases in
that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 163
Score = 56.4 bits (137), Expect = 2e-09
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 291 VPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVR 349
V + +++ E ++ + ++ V+IG+G IG N + + ++G C +G++V
Sbjct: 8 VEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVE 67
Query: 350 LEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLN----------------------- 386
++ S + D K+ V SVL N +G + N
Sbjct: 68 VKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRK 127
Query: 387 -GCLLGTGVLIG-NKTCLSGVKL 407
G ++G GV G N + GVK+
Sbjct: 128 LGAIIGDGVKTGINVSLNPGVKI 150
Score = 34.9 bits (81), Expect = 0.049
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 29/97 (29%)
Query: 313 SVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSV 371
+K V IGEG+ + + IIG+ C IG N +R
Sbjct: 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPN-----------------AYIRGYT 54
Query: 372 LSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLP 408
+ L +GC++G V + N + G K+P
Sbjct: 55 V-----------LGDGCVVGNSVEVKNSIIMDGTKVP 80
>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 59.0 bits (144), Expect = 3e-09
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 20/113 (17%)
Query: 304 AEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIE 362
IG+ + VIG G IG+ + + +IG IG++ L NV I
Sbjct: 110 DPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGAD-----CRLHANVTIY 164
Query: 363 DNCEV--RLSVLS----------YNTGVGEHSKL--LNGCLLGTGVLIGNKTC 401
+ R+ + S + G K+ L ++G V IG T
Sbjct: 165 HAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTT 217
Score = 49.4 bits (119), Expect = 3e-06
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 34/128 (26%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRL-- 350
N + V+IG V+ VIG+G IG + +L IG I S +
Sbjct: 124 NAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGS 183
Query: 351 ------------EKSYLFDNVKIEDNCEV---------RLSVLSYNTGVGEHSKLLNGCL 389
K V I D+ E+ L +T +GE K+ N
Sbjct: 184 DGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALD----DTVIGEGVKIDNLVQ 239
Query: 390 LGTGVLIG 397
+ V+IG
Sbjct: 240 IAHNVVIG 247
Score = 34.0 bits (79), Expect = 0.20
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 34/89 (38%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
VI + IGE IG N IG+ V + G
Sbjct: 108 VIDPSAKIGEG-----VSIGPNAVIGAGVVI----------------------------G 134
Query: 380 EHSKLLNGCLLGTGVLIGNKTCL-SGVKL 407
+ + G ++G GV IG L + V +
Sbjct: 135 DGVVIGAGAVIGDGVKIGADCRLHANVTI 163
Score = 30.9 bits (71), Expect = 1.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCII------GRNCTIGSNV 348
+D +IG+ + V I IG +T + + I GR C IG V
Sbjct: 224 DDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQV 274
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain.
Length = 153
Score = 53.6 bits (130), Expect = 2e-08
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 27/107 (25%)
Query: 300 NIYLAEDVLIGKTSVLK---QQVVIGEGSSIGENTQLSHC------IIGRNCTIGSNVRL 350
++ L E + +VL+ + IGE ++I + + L H IIG N T+G L
Sbjct: 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVL-HVDPGYPTIIGDNVTVGHGAVL 75
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
I DNC L +G + +L+G ++G G ++
Sbjct: 76 HGC------TIGDNC------L-----IGMGAIILDGAVIGKGSIVA 105
Score = 28.5 bits (65), Expect = 6.9
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 301 IYLAEDVLIGKTSVL-----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYL 355
+ ++V +G +VL +IG G+ I L +IG+ + + S +
Sbjct: 61 TIIGDNVTVGHGAVLHGCTIGDNCLIGMGAII-----LDGAVIGKGSIVAAG-----SLV 110
Query: 356 FDNVKIEDN 364
I
Sbjct: 111 PPGKVIPPG 119
>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 324
Score = 55.4 bits (134), Expect = 3e-08
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 283 VQRWVHPFVPSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRN 341
V P + IG + VVIG G IGEN + +IG +
Sbjct: 80 VAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDD 139
Query: 342 CTIGSNVRL-EKSYLFDNVKIEDNCEVRLSVL------SY-NTGVGEHSKL--LNGCLLG 391
IG R+ +++ V++ N + + Y +T G H K+ + ++
Sbjct: 140 VVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIE 199
Query: 392 TGVLIGNKTC 401
V IG T
Sbjct: 200 DDVEIGANTT 209
Score = 51.1 bits (123), Expect = 7e-07
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 36/151 (23%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLE------- 351
N+ + V IG+ ++ VVIG+ IG+ +++ + +I +G NV +
Sbjct: 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGS 174
Query: 352 --------------KSYLFDNVKIEDNCEV-------RLSVLSYNTGVGEHSKLLNGCLL 390
K V IED+ E+ R +T +GE +K+ N +
Sbjct: 175 DGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDR-GAFD-DTIIGEGTKIDNLVQI 232
Query: 391 GTGVLIGNKTCL-SGVKLPSAGADEVDDGNN 420
IG + + V + AG+ ++ G N
Sbjct: 233 AHNCRIGENCIIVAQVGI--AGSTKI--GRN 259
Score = 38.4 bits (90), Expect = 0.008
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 320 VIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGV 378
+IGEG+ I Q++H C IG NC I + V + S KI N ++ GV
Sbjct: 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGS-----TKIGRNV-----IIGGQVGV 268
Query: 379 GEHSKLLNGCLLGTGVLIGNKT 400
H + +G V IG K+
Sbjct: 269 AGHLE------IGDNVTIGAKS 284
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 55.7 bits (135), Expect = 4e-08
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL-EKSYLF 356
+ + +DV+IG V+K VIG I + L IG C +G RL S L
Sbjct: 277 EGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335
Query: 357 DNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
V I + E + + + + G H L +G+ V IG
Sbjct: 336 AGVHIGNFVETKNARIGKGSKAG-HLSYLGDAEIGSNVNIG 375
Score = 51.9 bits (125), Expect = 7e-07
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVK 360
+ I T + + V I + + IG + IG ++ S + NV
Sbjct: 250 LRDPARFDIRGTVEIGRDVEIDPNVILEGKVK-----IGDDVVIGPGCVIKNSVIGSNVV 304
Query: 361 IEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
I+ + S + VG ++L G +LG GV IGN
Sbjct: 305 IKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGN 342
Score = 29.9 bits (68), Expect = 4.2
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 294 YKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN------ 347
+ R L V IG K IG+GS G + L IG N IG+
Sbjct: 325 FARLRPGSVLGAGVHIGNFVETKNAR-IGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNY 383
Query: 348 --VRLEKSYLFDNVKIEDNC 365
K+ + D V I N
Sbjct: 384 DGANKHKTIIGDGVFIGSNT 403
>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
C-terminal Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase.
It catalyzes the first committed and rate-limiting step
in starch biosynthesis in plants and glycogen
biosynthesis in bacteria. It is the enzymatic site for
regulation of storage polysaccharide accumulation in
plants and bacteria. The enzyme is a homotetramer, with
each subunit containing an N-terminal catalytic domain
that resembles a dinucleotide-binding Rossmann fold and
a C-terminal LbH fold domain with at 5 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The LbH domain is involved in cooperative allosteric
regulation and oligomerization.
Length = 104
Score = 50.9 bits (123), Expect = 5e-08
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
IG+ +K ++ EG I + + ++ R +GS +E S + NV I N +R
Sbjct: 4 IGRRGEVKN-SLVSEGCII-SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR 61
Query: 369 LSVLSYNTGVGEHSKLLNG 387
+++ N + + +
Sbjct: 62 RAIIDKNVVIPDGVVIGGD 80
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic
translation initiation factor 5C and similar proteins.
eIF5C appears to be essential for the initiation of
protein translation; its actual function, and
specifically that of the C-terminal W2 domain, are not
well understood. The Drosophila ortholog, kra
(krasavietz) or exba (extra bases), may be involved in
translational inhibition in neural development. The
structure of this C-terminal domain resembles that of a
set of concatenated HEAT repeats.
Length = 194
Score = 52.6 bits (127), Expect = 8e-08
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 542 PLFKNYIKNESAQQDCLDAFEEFAEENESLSVVAGKLLHKLYDKDILSEDIVTKWFNKLE 601
PL + A+ L+ +E+ EN V K++ LY D+LSED + KW+ K
Sbjct: 110 PLLAAFCTTARAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDAILKWYKK-G 168
Query: 602 PSSLRKSV-----EPFVKWLLEADEE 622
S K V EPFV+WL EA+EE
Sbjct: 169 HSPKGKQVFLKQMEPFVEWLQEAEEE 194
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose pyrophosphorylase,
it contains an N-terminal catalytic domain that
resembles a dinucleotide-binding Rossmann fold and a
C-terminal LbH fold domain, presumably with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 80
Score = 49.1 bits (117), Expect = 1e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGE 380
IG+ + IG N +IG N TIG VRL++ + N + D+ V+ S++ +N+ VG
Sbjct: 8 IGKTAKIGPNV-----VIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGR 62
Query: 381 HSKLLNGCLLGTGVLIGN 398
++L N +LG V I +
Sbjct: 63 WTRLENVTVLGDDVTIKD 80
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity.
Length = 119
Score = 48.7 bits (117), Expect = 4e-07
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 321 IGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK-SYLFDNVKIEDNCEVRLSVLSYNT--- 376
IG+ IG ++ I + IG NV+++ +++ V IED+ + +V+ N
Sbjct: 1 IGDNCIIG-----TNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP 55
Query: 377 -GVGEHSKLLNGCLLGTGVLIG-NKTCLSGV 405
L G + G IG N T L GV
Sbjct: 56 RSKIYRKWELKGTTVKRGASIGANATILPGV 86
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms.
Length = 78
Score = 45.7 bits (109), Expect = 2e-06
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 319 VVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDN----VKIEDNCEVRLSVLS 373
V IGEG I + +IG N IG + + N I DN E+
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVI-GAATGPNEKNPTIIGDNVEI------ 53
Query: 374 YNTGVGEHSKLLNGCLLGTGVLIGNKT 400
G ++ + G +G +IG
Sbjct: 54 -----GANAVIHGGVKIGDNAVIGAGA 75
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGEN---------TQLSHCIIGRNCTIGSNVRLE 351
+++ E V I +V++ VVIG+ +IG + + IIG N IG+N +
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 352 KSYLFDNVKIEDNC 365
VKI DN
Sbjct: 61 G-----GVKIGDNA 69
Score = 36.8 bits (86), Expect = 0.003
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 287 VHPFVPSYKYRRNNIYLAEDVLIGKTSVL--------KQQVVIGEGSSIGENTQLSHCII 338
+HP R + + ++V IG +V+ K +IG+ IG N +I
Sbjct: 9 IHPKA----VIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGAN-----AVI 59
Query: 339 GRNCTIGSNVRL 350
IG N +
Sbjct: 60 HGGVKIGDNAVI 71
Score = 27.6 bits (62), Expect = 5.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQL 333
++V IG +V+ V IG+ + IG +
Sbjct: 49 DNVEIGANAVIHGGVKIGDNAVIGAGAVV 77
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 49.8 bits (120), Expect = 2e-06
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Query: 299 NNIYLAEDVLIGKTSV------LKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK 352
+ Y+ DV IG +V +K VIGE IG +++ IG TI ++V
Sbjct: 258 ESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSV---- 313
Query: 353 SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
IE+ S + N VG + L G ++G V IGN
Sbjct: 314 --------IEE------SKVGDNVTVGPFAHLRPGSVIGEEVKIGN 345
Score = 31.7 bits (73), Expect = 1.4
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 305 EDVLIGKTSVLKQQVV----IGEGSSIGENTQLS-HCIIGRNCTIGSNVRLEKSYLFDNV 359
D IG + V+ +G+ ++G L +IG IG+ V ++KS + +
Sbjct: 299 VDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT 358
Query: 360 KIEDNCEVRLSVLSY--NTGVGEHSKLLNGC 388
K+ S L+Y + VGE+ + GC
Sbjct: 359 KV--------SHLTYIGDAEVGENVNI--GC 379
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 48.4 bits (116), Expect = 3e-06
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96
P CLL + K LLE +E L +GI++I++ QI EL+K+ I + +
Sbjct: 20 PKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYPN------IKFVYN 73
Query: 97 D------GCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSALKSFKKINSM 145
YS + + DF+L+ GDVV + ++L L S N++
Sbjct: 74 PDYAETNNIYSL------YLARDFLDEDFLLLEGDVVFDPSILERLLSSPADNAI 122
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 49.5 bits (119), Expect = 4e-06
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
Y+ DV IG + VVI + NT IG N IG ++ S + DN
Sbjct: 261 ATTYIRGDVEIG------RDVVIEPNVILEGNTV-----IGDNVVIGPGSVIKDSVIGDN 309
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
I+ + S + VG ++L G +LG V IGN
Sbjct: 310 AVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN 349
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation.
Length = 197
Score = 46.7 bits (112), Expect = 8e-06
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLS-------HCIIGRNCTIGSNVRLEKSY 354
++ +IG+ V+ VI + IG+N ++ C+IG I V L
Sbjct: 92 VVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLS--- 148
Query: 355 LFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
V I + + G G + ++ G +G G +IG
Sbjct: 149 --GGVTIGEGAFI---------GAG--ATIIQGVTIGAGAIIG 178
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 47.2 bits (113), Expect = 8e-06
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 34/141 (24%)
Query: 24 TDTFNRNFFPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKE 83
TDT P+P L+P+ K L+++ L+ L +GI I+V +QI +
Sbjct: 17 TDT-------RPKP--LVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSR 67
Query: 84 KSLVGTLITLIVSD--------GCYSFGDV--MRDLDGKAVIRNDFILVSGDVVSNINLL 133
L + +SD G G + L G F++V+GD++ + +L
Sbjct: 68 FGL-----RITISDEPDELLETG----GGIKKALPLLG----DEPFLVVNGDILWDGDLA 114
Query: 134 SALKSFKKINSMDSGAVALVL 154
L MD+ + L L
Sbjct: 115 PLLL--LHAWRMDALLLLLPL 133
>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. This family of
proteins includes the characterized NeuD sialic acid
O-acetyltransferase enzymes from E. coli and
Streptococcus agalactiae (group B strep). These two are
quite closely related to one another, so extension of
this annotation to other members of the family in
unsupported without additional independent evidence. The
neuD gene is often observed in close proximity to the
neuABC genes for the biosynthesis of
CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD
sequences from these organisms were used to construct
the seed for this model. Nevertheless, there are
numerous instances of sequences identified by this model
which are observed in a different genomic context
(although almost universally in exopolysaccharide
biosynthesis-related loci), as well as in genomes for
which the biosynthesis of sialic acid (SA) is
undemonstrated. Even in the cases where the association
with SA biosynthesis is strong, it is unclear in the
literature whether the biological substrate is SA
iteself, CMP-SA, or a polymer containing SA. Similarly,
it is unclear to what extent the enzyme has a preference
for acetylation at the 7, 8 or 9 positions. In the
absence of evidence of association with SA, members of
this family may be involved with the acetylation of
differring sugar substrates, or possibly the delivery of
alternative acyl groups. The closest related sequences
to this family (and those used to root the phylogenetic
tree constructed to create this model) are believed to
be succinyltransferases involved in lysine biosynthesis.
These proteins contain repeats of the bacterial
transferase hexapeptide (pfam00132), although often
these do not register above the trusted cutoff.
Length = 193
Score = 46.4 bits (111), Expect = 9e-06
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 23/103 (22%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGEN------TQLSH-CIIGRNCTIGSNVRLEKSY 354
++ IG+ +V+ VI IG+N + H C+IG I V L
Sbjct: 86 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG-- 143
Query: 355 LFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
V I + +G + ++ G +G G ++G
Sbjct: 144 ---GVVIGEGVF-----------IGAGATIIQGVTIGAGAVVG 172
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 361
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
++ EG I T +SH ++G IGS +E S + +V I +R +++
Sbjct: 296 LVSEGCIISGAT-VSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIID------ 348
Query: 380 EHSKLLNGCLLGTGVLIGN 398
+G GV+IGN
Sbjct: 349 ------KNVRIGEGVVIGN 361
Score = 45.7 bits (109), Expect = 4e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL 350
L V IG S ++ V++G IG + + II +N IG V +
Sbjct: 313 LGIRVRIGSGSTVEDSVIMG-DVGIGRGAVIRNAIIDKNVRIGEGVVI 359
>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six
repeats).
Length = 36
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 319 VVIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEK 352
VIGE IG N + IIG N IG+ V +
Sbjct: 2 TVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
Score = 33.9 bits (79), Expect = 0.009
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSH 335
+ E+VLIG V+ V+IG+ IG +
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
Score = 33.5 bits (78), Expect = 0.014
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 306 DVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIG 345
+IG+ ++ VVIG G IG+N IIG IG
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDN-----VIIGAGVVIG 35
Score = 32.7 bits (76), Expect = 0.022
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 335 HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
+IG N IG NV + V I DN +
Sbjct: 1 GTVIGENVLIGPNVVIG-----GGVIIGDNVIIG 29
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 47.8 bits (114), Expect = 1e-05
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDN 358
N Y+ DV IG +++ I + IGE+ C IG R+ + +N
Sbjct: 248 NTTYIHYDVEIGMDTIIYPMTFIEGKTRIGED-----------CEIGPMTRIVDCEIGNN 296
Query: 359 VKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
VKI + E SV+ + VG S+L G +L V IGN
Sbjct: 297 VKIIRS-ECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGN 335
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 47.5 bits (114), Expect = 1e-05
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL---SH---CIIGRNCTIGSNVRLEK-S 353
++ + D +IG+ V++ VV G G ++ + SH +G +G RL +
Sbjct: 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGA 322
Query: 354 YLFDNVKIEDNCEVRLSVLSYNTGVGEHSK 383
L + K+ + EV+ N +GE +K
Sbjct: 323 ELGEGAKVGNFVEVK------NAKLGEGAK 346
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 47.3 bits (113), Expect = 1e-05
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 274 SYQIASRDIVQRWVHPFV----PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGE 329
SY A+ D++ P + ++ N L S + +V G I
Sbjct: 252 SYYEANMDLLS--PQPELNLYDRNWPIYTKNKNLPP-AKFVNDSEVSNSLV-AGGCII-- 305
Query: 330 NTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCL 389
+ + + ++ R IG +E S + +V+I + +R +++ +
Sbjct: 306 SGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIID------------KNVV 353
Query: 390 LGTGVLIGNKT 400
+G GV+IG
Sbjct: 354 IGEGVVIGGDK 364
>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 45.3 bits (108), Expect = 2e-05
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQL----SHCIIGRNCTIGSNVRL-----EKS 353
+ + ++ + V IG G SI L IG I V +
Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPV 73
Query: 354 YLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPSAG 411
+ D+V I V + N +G + +L+G ++G G ++G ++ K G
Sbjct: 74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGG 131
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 299 NNIYLAEDVLIGKTSVL----KQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSY 354
I + I V+ V IG+ +IG + C IG N IG +
Sbjct: 49 EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG-----AT 103
Query: 355 LFDNVKIEDNCEVR 368
+ D I D V
Sbjct: 104 VLDGAVIGDGSIVG 117
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 46.2 bits (110), Expect = 2e-05
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96
P L+ + + ++ T+E+L +GI E +V + +LV+ K +I S
Sbjct: 22 PKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRA---DLVEEFLKKYPFNAKIVINS 78
Query: 97 DGCYSFGDVMRDL-DGKAVIRNDFILVSGDVV 127
D Y + L K + FILV D V
Sbjct: 79 D--YEKTNTGYSLLLAKDYMDGRFILVMSDHV 108
>gnl|CDD|188173 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132) [Cell envelope, Biosynthesis and degradation
of surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 45.3 bits (108), Expect = 3e-05
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 29/137 (21%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGEN-TQLSHCIIGRNCTIGSNVRL----------- 350
+ E+V IG ++ V IG+G + + L H IG I +
Sbjct: 13 IGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKG 72
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNGCLLGTGVLIGNKTC 401
EK+ L I DN +R V + N G +G ++ L+ + ++GN
Sbjct: 73 EKTRL----IIGDNNTIREFV-TINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVI 127
Query: 402 LS-GVKLPSAGADEVDD 417
L+ L AG EV D
Sbjct: 128 LANNATL--AGHVEVGD 142
>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 45.1 bits (108), Expect = 4e-05
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 42/134 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
+ E+V IG V+ VVIG+G+ IG SH +I + TIG N R+
Sbjct: 17 IGENVEIGPFCVIGPNVVIGDGTVIG-----SHVVIDGHTTIGKNNRIFPFASIGEDPQD 71
Query: 351 -----EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CLL 390
E + L I DN +R V + N G +G+++ L+ C++
Sbjct: 72 LKYKGEPTRLV----IGDNNTIREFV-TINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVV 126
Query: 391 GTGVLIGNKTCLSG 404
G V++ N L+G
Sbjct: 127 GNHVILANNATLAG 140
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region.
Length = 254
Score = 44.7 bits (107), Expect = 6e-05
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 42/134 (31%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRL------------ 350
+ E+V IG V+ V IG+G+ IG SH +I TIG N R+
Sbjct: 14 IGENVEIGPFCVIGPNVEIGDGTVIG-----SHVVIDGPTTIGKNNRIFPFASIGEAPQD 68
Query: 351 -----EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNG------CLL 390
E + L +I DN +R V + + G +G ++ L+ C++
Sbjct: 69 LKYKGEPTRL----EIGDNNTIREFV-TIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVI 123
Query: 391 GTGVLIGNKTCLSG 404
G V++ N L+G
Sbjct: 124 GNNVILANNATLAG 137
Score = 38.6 bits (91), Expect = 0.006
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 33/102 (32%)
Query: 309 IGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
I T+++ IGE IG C+IG N IG + +V I+
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPF-----CVIGPNVEIGDGTVIG-----SHVVIDG----- 46
Query: 369 LSVLSYNTGVGEHSKLLNGCLLG------------TGVLIGN 398
T +G+++++ +G T + IG+
Sbjct: 47 ------PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 44.5 bits (106), Expect = 1e-04
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 317 QQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLF--DNVKIEDNCEVRLSVLSY 374
+ +I EG I +N + H ++G I S +E + + D + + E
Sbjct: 307 TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP 365
Query: 375 NTGVGEHSKLLNG-----CLLGTGVLIGNK 399
G+GE + + +G V I NK
Sbjct: 366 PLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395
>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 43.8 bits (104), Expect = 1e-04
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRL----------- 350
+ EDV IG ++ V IG+G+ + + + H IGRN I +
Sbjct: 18 IGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSYNTG---------VGEHSKLLNGCLLGTGVLIGNKTC 401
E + L I DN +R V + + G +G+++ ++ + +IGN
Sbjct: 78 EPTRL----IIGDNNTIREFV-TIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCI 132
Query: 402 LS-GVKLPSAGADEVDD 417
L+ L AG EV D
Sbjct: 133 LANNATL--AGHVEVGD 147
Score = 37.2 bits (87), Expect = 0.015
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 33/103 (32%)
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
I T++++ IGE IG CIIG N IG L KS++
Sbjct: 5 KIHPTAIIEPGAEIGEDVKIGP-----FCIIGPNVEIGDGTVL-KSHV------------ 46
Query: 368 RLSVLSYNTGVGEHSKLLNGCLLG------------TGVLIGN 398
V+ +T +G ++++ +G T ++IG+
Sbjct: 47 ---VVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86
Score = 31.0 bits (71), Expect = 1.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 299 NNIYLAEDVLIGKTSVLKQQVVIGEGS------SIGENTQ-LSH------CIIGRNCTI 344
N+ + + ++ V++ IG + SIGE+ Q L + IIG N TI
Sbjct: 32 PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI 90
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 44.3 bits (105), Expect = 2e-04
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 302 YLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKI 361
Y+ V+IG+ + + V I + IGE + ++ + C IG +V ++ + ++ +
Sbjct: 264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVV 323
Query: 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
D + +G + L G L V IGN
Sbjct: 324 GD-----------DVAIGPMAHLRPGTELSAHVKIGN 349
Score = 28.9 bits (65), Expect = 9.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIG 345
L+ V IG V +++V+GEGS T L IGRN IG
Sbjct: 341 LSAHVKIGNF-VETKKIVMGEGSKASHLTYLGDATIGRNVNIG 382
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 43.3 bits (103), Expect = 3e-04
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR---- 368
SVL Q V +GEGS + + +I IG NV +E++ + +N I D +
Sbjct: 309 SVLFQGVQVGEGSVVKD------SVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKE 362
Query: 369 -LSVLSYNTGVGEHSK 383
++V+ N +G +
Sbjct: 363 VITVIGENEVIGVGTV 378
Score = 34.8 bits (81), Expect = 0.13
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 321 IGEGSSI-GENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVG 379
+ EG + G + H ++ + +G ++ S + KI +N + +++ N +G
Sbjct: 296 VVEGCVVYGT---VEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIG 352
Query: 380 EHSKL 384
+ +
Sbjct: 353 DGVII 357
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form.
Length = 109
Score = 40.1 bits (95), Expect = 4e-04
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 28/96 (29%)
Query: 319 VVIGEGSSIGENTQLS---HCIIGRNCTIGSNVRL--------------EKSYLFDNVKI 361
+ IG+ IG +S IG N IG NV + E+ + I
Sbjct: 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVI 61
Query: 362 EDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
D+ +G + +L G +G G ++G
Sbjct: 62 GDDVW-----------IGANVVILPGVTIGDGAVVG 86
Score = 33.2 bits (77), Expect = 0.099
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 335 HCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV--RLSVLSYNTGVGEHSKLL------- 385
+ IG N IG + + I DN + +++ +N + + + +
Sbjct: 1 NISIGDNVYIGPGCVI---SAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSA 57
Query: 386 -----NGCLLGTGVLIGNKTCLSGVKL 407
+ +G V+I L GV +
Sbjct: 58 PIVIGDDVWIGANVVI-----LPGVTI 79
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 43.0 bits (102), Expect = 4e-04
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCT----------IGSNVRLEK 352
L DV+I + L+ VIG G IG + + + IG N T IG V++
Sbjct: 265 LGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGP 324
Query: 353 -SYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKL-----LNGCLLGTGVLIGNKT 400
++L +I NC + V + +GE SK+ + LG V IG T
Sbjct: 325 YAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGT 378
Score = 28.7 bits (65), Expect = 9.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 314 VLKQQVVIGEGSSIGENTQLSHCI-IGRNCTIG 345
V K + VIG+ S G N+ L I +G + T+
Sbjct: 386 VKKHRTVIGDRSKTGANSVLVAPITLGEDVTVA 418
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 42.5 bits (101), Expect = 5e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 317 QQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT 376
Q ++ GS I + + ++ N + S +E S L D V+I VR ++L N
Sbjct: 314 QDSLVSAGSII-SGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNV 372
Query: 377 GVGEH 381
V
Sbjct: 373 VVPPG 377
Score = 32.9 bits (76), Expect = 0.54
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 336 CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKL 384
++ I S + S L NV +E EV SVL +G + +
Sbjct: 316 SLVSAGSII-SGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVV 363
Score = 30.6 bits (70), Expect = 2.8
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 313 SVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
SVL VV+ G+ ++ ++ IG + ++ L NV + +
Sbjct: 332 SVLSPNVVVESGA------EVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of
dTDP-L-rhamnose, a cell wall constituent and a feedback
inhibitor of the enzyme.There are two forms of
Glucose-1-phosphate thymidylyltransferase in bacteria
and archeae; short form and long form. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which
dTDP-L-rhamnose is not necessarily produced.The long
from enzymes also have a left-handed parallel helix
domain at the c-terminus, whereas, th eshort form
enzymes do not have this domain. The homotetrameric,
feedback inhibited short form is found in numerous
bacterial species that produce dTDP-L-rhamnose.
Length = 236
Score = 41.4 bits (98), Expect = 6e-04
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLIVS 96
P L+P+ K +++Y +E L +GIE+I + +I+E + + S G IT I+
Sbjct: 22 PKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEAL--GDGSRFGVRITYILQ 79
Query: 97 D 97
+
Sbjct: 80 E 80
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 41.5 bits (98), Expect = 7e-04
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 300 NIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-------------------SHCIIGR 340
+ +V IG + + VI + IG+N ++ S IG
Sbjct: 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82
Query: 341 NCTIGSNVRLEKSYLFDNV-KIEDNCEVRL-SVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
I V + + V +I ++ + S ++++ +G + L+NG LL V +G+
Sbjct: 83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGD 142
Query: 399 KTCLSG 404
+ +SG
Sbjct: 143 RAIISG 148
Score = 39.2 bits (92), Expect = 0.003
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 303 LAEDVLIGKTSVLKQQVVIGEGSSIGEN-TQLSHCIIGRNCTIGSNVRL----------- 350
L V IG +V+ V IG+G+ IG + L IG+N I +
Sbjct: 14 LGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKG 73
Query: 351 EKSYLFDNVKIEDNCEVRLSVLSY-------NTGVGE------HSKLLNGCLLGTGVLIG 397
E+S L +I D +R V + T +G +S + + C +G V++
Sbjct: 74 EESRL----EIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILV 129
Query: 398 NKTCLSG 404
N L+G
Sbjct: 130 NGALLAG 136
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Many of the genes identified by this model
are in proximity to the GlmS and GlmM genes and are also
presumed to be GlmU. However, some archaeal genomes
contain multiple closely-related homologs from this
family and it is not clear what the substrate
specificity is for each of them.
Length = 393
Score = 41.8 bits (99), Expect = 7e-04
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 314 VLKQQVVIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLEK-SYLFDNVKIEDNCEVRLSV 371
+K VVIGEG+ I T + IG+NC IG N + + + +NV I + E++ S+
Sbjct: 244 TIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSI 303
Query: 372 LSYNTGVGEH-----SKLLNGCLLGTGVLIGN 398
+ T + S + C G G + N
Sbjct: 304 IMEGTKIPHLSYVGDSVIGENCNFGAGTKVAN 335
Score = 40.7 bits (96), Expect = 0.002
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 35 PEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLVGTLITLI 94
P+P +LP+ K LLE+ +E L +GI++ + ++RE + G I +
Sbjct: 22 PKP--MLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKVREYFGDGSRG--GVPIEYV 77
Query: 95 VSDGCYSFGDVMRDLDGKAVIRNDFILVSGDVVSNINLLSAL 136
V + D + K + ++F++++GDV+ + +LL L
Sbjct: 78 VQEEQLGTADALGSA--KEYVDDEFLVLNGDVLLDSDLLERL 117
Score = 33.7 bits (78), Expect = 0.26
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 44/139 (31%)
Query: 298 RNNIYLAEDVLIGKTSV------LKQQVVIGEGSSIG-----------ENTQLSH----- 335
R+ Y+ V IGK ++ VIG IG E T++ H
Sbjct: 258 RSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSIIMEGTKIPHLSYVG 317
Query: 336 -CIIGRNC-----TIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCL 389
+IG NC T +N+R D+ V+++V G KL G +
Sbjct: 318 DSVIGENCNFGAGTKVANLRH------------DDKPVKVTVKGKRVDTG-RRKL--GAI 362
Query: 390 LGTGVLIG-NKTCLSGVKL 407
+G GV G N + GVK+
Sbjct: 363 VGDGVKTGINVSINPGVKI 381
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity.
Length = 155
Score = 39.7 bits (93), Expect = 0.001
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 337 IIGRNCTIGSNVRLEKSY----LFDNVKIEDNCEV-----RLSVLSYNTGVGEHSKLLNG 387
IIG+NC IG + L + + D ++DNC + + +VL N +G H +L+G
Sbjct: 20 IIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIG-HGAILHG 78
Query: 388 CLLGTGVLIG 397
C +G L+G
Sbjct: 79 CTIGRNALVG 88
Score = 34.7 bits (80), Expect = 0.053
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 317 QQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
Q V+ E IG L C IGRN +G N + + D I + V
Sbjct: 60 QDTVLEENGHIGHGAILHGCTIGRNALVGMN-----AVVMDGAVIGEESIV 105
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs.
Length = 139
Score = 38.9 bits (91), Expect = 0.001
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 298 RNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHC-IIGRNCTIGSNVR------- 349
R+ ++ ++ S + + EG+ + + C IG+N + +
Sbjct: 11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEP 70
Query: 350 LEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSGVKLPS 409
L+ + V IED+ + N V E + G +L GV++ T + +
Sbjct: 71 LQAT----PVIIEDDV-----FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGE 121
Query: 410 AGADEV 415
V
Sbjct: 122 IYYGRV 127
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain.
Length = 101
Score = 36.6 bits (86), Expect = 0.005
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 25/82 (30%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNV---KIEDNCEVRLSVLSYN 375
+VIGE +IG NCTI V L I DN
Sbjct: 23 IVIGE-----------TAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVV--------- 62
Query: 376 TGVGEHSKLLNGCLLGTGVLIG 397
+G +K+L +G V IG
Sbjct: 63 --IGAGAKILGNITIGDNVKIG 82
Score = 30.5 bits (70), Expect = 0.71
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Query: 305 EDVLIGKTSVLKQQVVIGEGS--------SIGENTQL-SHC------IIGRNCTIGSN 347
E +IG + Q V +G +IG+N + + IG N IG+N
Sbjct: 27 ETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84
>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 38.7 bits (90), Expect = 0.007
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTS-----VLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGS 346
P+ + I + DV+IGK S V+ +++++GE I + I C +
Sbjct: 8 PNTRVEEAIIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTG 67
Query: 347 NVRLE-KSYLFDNVKIE 362
NV +E +Y+ + I+
Sbjct: 68 NVIVENDAYIGEFSSIK 84
Score = 34.4 bits (79), Expect = 0.15
Identities = 18/80 (22%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSS-IGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIED 363
+ +L+ + +++ +++ +G IG+N+ L + ++G +G VR+ + +++I+
Sbjct: 2 KRLLVPPNTRVEEAIIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDM 61
Query: 364 NCEVRLSVLSYNTG-VGEHS 382
C+V +V+ N +GE S
Sbjct: 62 WCKVTGNVIVENDAYIGEFS 81
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis [Energy metabolism, Biosynthesis
and degradation of polysaccharides].
Length = 369
Score = 38.1 bits (89), Expect = 0.010
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 305 EDVLIGKTSVLKQQV---VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKI 361
E+ L+ +++ +V ++ G +G++ + +CII + IG LE + +V I
Sbjct: 288 ENSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVI 347
Query: 362 EDNCEVR 368
E N ++
Sbjct: 348 EPNVKIA 354
Score = 33.1 bits (76), Expect = 0.36
Identities = 42/279 (15%), Positives = 102/279 (36%), Gaps = 48/279 (17%)
Query: 116 RNDFILVSG-DVVSNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYE 174
+++ +V +V NI+L + LK ++ +G V+YKK + +S + ++ E
Sbjct: 113 TSEYTVVLNSHMVCNIDLKAVLKYHEE-----TGKDITVVYKKVKPADASEYDTILRFDE 167
Query: 175 CDSKKLLMHQTPQDNQKKVNIPMENILLYSK---LEICAHLASTGIMICSPAVPPLFSDN 231
K + +++ NI + +I + S +E+ G + +
Sbjct: 168 SGKVKSIGQNLNP--EEEENISL-DIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKE 224
Query: 232 FDFQTQEHFIKGVLINEEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIV--QRWVHP 289
+ E+ G Y + ++ ++ SY A+ D++ Q +
Sbjct: 225 LNINAYEY--TG------------YLANINSVK---------SYYKANMDLLDPQNFQSL 261
Query: 290 FVPSYKYRRNNIYLA----EDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIG 345
F S + IY + S ++ +V G I ++ + I+ R +G
Sbjct: 262 FYSS----QGPIYTKVKDEPPTYYAENSKVENSLV-ANGCII--EGKVENSILSRGVHVG 314
Query: 346 SNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKL 384
+ ++ + I + + ++ + + + K+
Sbjct: 315 KDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353
>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 36.9 bits (86), Expect = 0.013
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 319 VVIGEGSSIGENTQLSHCI---------------IGRNCTIGSNVR-LEKSYLFDNVKIE 362
VVIGE + IG++ + H + IG IG+ + L + DN KI
Sbjct: 88 VVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIG 147
Query: 363 DNCEVRLSVLSYNTGVGEHSKLLNG 387
V V T VG ++++
Sbjct: 148 AGSVVLKDVPPNATVVGVPARVIGR 172
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain.
Length = 167
Score = 36.1 bits (84), Expect = 0.019
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 309 IGKTSVLKQQVVIG--EGSS--IGENTQLSH-------CIIGRNCTIGSNVRLEKSYLFD 357
IG ++ VVI EG S IG+N ++H IG NC IG + + + D
Sbjct: 45 IGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGD 104
Query: 358 NVKIEDNCEVR 368
N I N V
Sbjct: 105 NCVIGHNAVVD 115
Score = 29.9 bits (68), Expect = 2.1
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 306 DVLIGKTSVLKQQ------VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNV 359
V IGK + IG+ IG + + + +G NC IG N + D V
Sbjct: 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNA------VVDGV 117
Query: 360 KIEDN 364
+I
Sbjct: 118 EIPPG 122
>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 425
Score = 37.1 bits (87), Expect = 0.022
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 336 CIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLN-----GCLL 390
CII G+ VR +S LF V++ V SVL + VG +L GC++
Sbjct: 334 CIIS-----GAVVR--RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVI 386
Query: 391 GTGVLIG 397
G++IG
Sbjct: 387 PEGMVIG 393
Score = 30.6 bits (70), Expect = 2.7
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 332 QLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR 368
+ ++ + S +E S L +V + +C +R
Sbjct: 340 VVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR 376
Score = 30.2 bits (69), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 11/43 (25%)
Query: 313 SVLKQQVVIGEGSS-----------IGENTQLSHCIIGRNCTI 344
SVL +V + S+ +G + +L C+I R C I
Sbjct: 344 SVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVI 386
>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an
outer membrane protein which plays a role in iron
acquisition. It binds iron when it is complexed with
pyochelin. It adopts the left-handed parallel beta-helix
(LbH) structure, and contains imperfect tandem repeats
of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Acyltransferase activity has
not been observed in this group.
Length = 154
Score = 35.2 bits (81), Expect = 0.032
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 307 VLIGKTSVLKQQVVIGEGSSI-------GENTQLSHCIIGRNCTIGSNVRLEKSYLF--- 356
+ TS + VVIGE +S+ G+N + IG+ + NV + + +
Sbjct: 7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIY---IGKYSNVQENVSIHTDHGYPTE 63
Query: 357 --DNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIG 397
D V I N V + + VG + LLNG +G V+IG
Sbjct: 64 IGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIG 106
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 36.4 bits (85), Expect = 0.034
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 28/128 (21%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTS-HVNQIRELVKRKEKSLVGTLITLIVSDG 98
LLP+ +K ++ Y LE L L+GI +I++ +EL+ G IT V
Sbjct: 25 LLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSD--FGVDITYAVQP- 81
Query: 99 CYSFGDVMRDLDGKAVIR-------NDFILVSGDVVSNI---NLLSALKSFKKINSMDSG 148
D AV+ +DF+L GD NI L L+ F + SG
Sbjct: 82 -------EPDGLAHAVLIAEDFVGDDDFVLYLGD---NIFQDGLSELLEHFAEE---GSG 128
Query: 149 AVALVLYK 156
A ++LY+
Sbjct: 129 A-TILLYE 135
>gnl|CDD|234432 TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Homologs of this enzyme are identified in
a number of bacterial organisms and modeled here. A
number of these are observed in proximity to the GlmS
and GlmM genes, and phylogenetic profiling by PPP
identifies the LEPBI_I0518 gene in Leptospira biflexa as
a likely Glm-system candidate. Multiple sequence
alignments of these bacterial homologs with their
archaeal counterparts reveals significant structural
differences, necessitating the construction of separate
models.
Length = 337
Score = 36.5 bits (85), Expect = 0.038
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 259 VVDDIEYGISVKDWPSYQIASRDIVQR---WVHPFVPSYKY-----RRNNIYLAEDVLIG 310
+ D E + S +V ++ IY+ +D I
Sbjct: 95 IERDFELLTEGRKSIPVHDGSVVVVNPSHVFIEEGATVRPGAVLDASDGPIYIGKDARIE 154
Query: 311 KTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDN 358
S L+ V IG G+ + ++ IG C IG V E S +
Sbjct: 155 PFSFLEGPVYIGPGARVKAGARIYGGTSIGPTCKIGGEV--ENSIIEGY 201
>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 35.6 bits (82), Expect = 0.041
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 15/160 (9%)
Query: 250 ILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYL---AED 306
L +DD + ++ K + A I+ R V + R + + ++
Sbjct: 10 ELLADRARVRIDDGAFNVAGKPVKLGRYAE--ILGRLVGIKIGEVAVIRPPVRIDLGEKN 67
Query: 307 VLIGKTSVLKQQVVI--GEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDN 364
+ IG + VVI GEG +IG+N ++G N TI +N F I
Sbjct: 68 LTIGDLCFIGVNVVILVGEGITIGDN-----VVVGPNVTIYTNSHP---GDFVTANIGAL 119
Query: 365 CEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGNKTCLSG 404
+ + +G + +L G +G G +IG + ++
Sbjct: 120 VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159
Score = 29.5 bits (66), Expect = 3.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVK 360
+ + EDV IG +V+ V IGEG+ IG + ++ + G+ R+ + K
Sbjct: 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIR-KRDVVAK 183
Query: 361 IE 362
I
Sbjct: 184 IG 185
>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon.
This domain is found at the C-terminus of several
translation initiation factors, including the epsilon
chain of eIF2b, where it has been found to catalyze the
conversion of eIF2.GDP to its active eIF2.GTP form. The
structure of the domain resembles that of a set of
concatenated HEAT repeats.
Length = 135
Score = 34.0 bits (78), Expect = 0.067
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 481 EEKLVCDNLTLEINSSRYAYNVTVKEVNFYMVKAILVVKNKPDMDMKSFHTHMMSKINYF 540
E+K S ++++EV ++ A++ D + ++ + +
Sbjct: 16 EDKSSDVESVKAAKSKLDLDPISLEEVVKVLLTAVVNAVESADSISLTQKEQLVLVLKKY 75
Query: 541 LPLFKNYIKNESAQQD-CLDAFEEFAEEN---ESLSVVAGKLLHKLYDKDILSEDIVTKW 596
P+ + +K Q L E+ + E +S++ K+L LYD D+LSE+ + W
Sbjct: 76 GPVLRELLKLIKKDQLYLLLKIEKLCLQLKLSELISLLE-KILDLLYDADVLSEEAILSW 134
Query: 597 F 597
F
Sbjct: 135 F 135
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 34.8 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVK 360
V IG IGENT++ + II +N IG NV + D V+
Sbjct: 372 VPIG----IGENTKIRNAIIDKNARIGKNVVIINK---DGVQ 406
Score = 34.4 bits (80), Expect = 0.18
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNT--G 377
+I G + ++ H ++G IG V +E + + E E+ + G
Sbjct: 317 IISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIG 375
Query: 378 VGEHSKLLNGCLL------GTGVLIGNKTCLSGVKLPSAGADEVDDG 418
+GE++K+ N ++ G V+I NK GV+ AD ++G
Sbjct: 376 IGENTKIRN-AIIDKNARIGKNVVIINK---DGVQ----EADREEEG 414
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator [Energy metabolism, Other].
Length = 192
Score = 33.7 bits (77), Expect = 0.17
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 337 IIGRNCTIGSNVRLEKSY----LFDNVKIEDNCEVRLSVLSYNTGVGE-----HSKLLNG 387
I+G+ C +G L + L + I+DNC V +T V E H +L+G
Sbjct: 28 ILGKRCYVGPLASLRGDFGRIVLKEGANIQDNC-VMHGFPGQDTVVEENGHVGHGAILHG 86
Query: 388 CLLGTGVLIG 397
C++G L+G
Sbjct: 87 CIVGRNALVG 96
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 317 QQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
Q V+ E +G L CI+GRN +G N + + D I +N V
Sbjct: 68 QDTVVEENGHVGHGAILHGCIVGRNALVGMN-----AVVMDGAVIGENSIV 113
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 33.7 bits (78), Expect = 0.20
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 40 LLPLVNKC-LLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKR 81
L+P+++K +++YTL L +GI E IV CT + R LV
Sbjct: 24 LVPVLDKYPMIQYTLSRLMNAGIREPIVICT---QEHRFLVAE 63
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. The family of known and putative
glucose-1-phosphate thymidyltransferase (also called
dTDP-glucose synthase) shows a deep split into a short
form (see TIGR01207) and a long form described by this
model. The homotetrameric short form is found in
numerous bacterial species that incorporate
dTDP-L-rhamnose, which it helps synthesize, into the
cell wall. It is subject to feedback inhibition. This
form, in contrast, is found in many species for which it
serves as a sugar-activating enzyme for antibiotic
biosynthesis and or other, unknown pathways, and in
which dTDP-L-rhamnose is not necessarily produced.
Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 33.9 bits (78), Expect = 0.20
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 319 VVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVRLSVLSYNTGV 378
VV+GEG+ I + +IG +C I ++ + + + V I D EV
Sbjct: 255 VVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD-AEV----------- 302
Query: 379 GEHSKLLNGCLLGTGVLIGNKT----CLSGVKLPSAGADE 414
EHS +L+ V+ G + + G K+ G
Sbjct: 303 -EHSIVLDES-----VIEGVQARIVDSVIGKKVRIKGNRR 336
Score = 32.8 bits (75), Expect = 0.56
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEI-IVFCTSHVNQIRELVKRKEKSLVGTLITLIV 95
L+P+ NK +L+Y +E L +GI +I IV +I+E+V E+ G IT IV
Sbjct: 24 LIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGER--FGAKITYIV 78
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity.
Length = 161
Score = 33.0 bits (76), Expect = 0.21
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 297 RRNNIYLAEDVLIGKTSVLKQQVVIGEGS----SIGENTQLSHCIIGRNCTIGSNVRLEK 352
R++ I ++++++ ++++ V+I G SIG +CI+ C I +
Sbjct: 12 RKSVICGSQNIVLNGKTIIQSDVII-RGDLATVSIGR-----YCILSEGCVIRPPFKKFS 65
Query: 353 --SYLF-----DNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLI 396
F D V I +NC V + + +G++ + C++ V I
Sbjct: 66 KGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKI 116
Score = 31.8 bits (73), Expect = 0.50
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 292 PSYKYRRNNIY----LAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSN 347
P K+ + + + + V IG+ V+ IG IG+N C+IGR C I
Sbjct: 60 PFKKFSKGVAFFPLHIGDYVFIGENCVV-NAAQIGSYVHIGKN-----CVIGRRCIIK-- 111
Query: 348 VRLEKSYLFDNVKIEDNC 365
D VKI D
Sbjct: 112 ---------DCVKILDGT 120
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 34.2 bits (78), Expect = 0.21
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 292 PSYKYRRNNIYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLE 351
P + + L DV I +L+ Q + +G +IG + ++ ++ I + LE
Sbjct: 262 PGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE 321
Query: 352 KSYLFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+ + + VG ++L G +LG GV IGN
Sbjct: 322 GAE-----------------VGAGSDVGPFARLRPGTVLGEGVHIGN 351
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 101
Score = 31.9 bits (73), Expect = 0.22
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 301 IYLAEDVLIGKTSVLKQQVVIGEGSSIGENTQL-SHCIIGRNCTIGSNV 348
IY+ +D +I +V++ V IG GS + ++ + IG C IG V
Sbjct: 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEV 60
>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-acetyltransferase. This enzyme is part of the
diaminopimelate pathway of lysine biosynthesis.
Alternate name: tetrahydrodipicolinate
N-acetyltransferase. Note that IUBMB lists this
alternate name as the accepted name. Unfortunately, the
related succinyl transferase acting on the same
substrate (EC:2.3.1.117, TIGR00695) uses the opposite
standard. We have decided to give these two enzymes
names which more clearly indicated that they act on the
same substrate.
Length = 231
Score = 33.6 bits (77), Expect = 0.22
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 305 EDVLIGKTSVLKQQVVIGEGSSIGENTQL-------SHCIIGRNCTIGSNVRLE---KSY 354
+ V+IG +V+ VI G+ IGE T + +G+N IG+ L +
Sbjct: 97 DQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPP 156
Query: 355 LFDNVKIEDNCEVRLSVLSYNTGVGEHSKLLNGCLLGTGVLI 396
V IEDN VL +G ++ +L G +G G ++
Sbjct: 157 SAKPVVIEDN------VL-----IGANAVILEGVRVGKGAVV 187
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 32.9 bits (76), Expect = 0.29
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSLV 87
LLPL K LL + L+ +G+ +IV + + +R + +V
Sbjct: 20 LLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPVVVV 67
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 33.0 bits (76), Expect = 0.45
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 318 QVVIGEGSSIGENTQL-SHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEVR-----LSV 371
V IG I TQL IG + +G + L +V + + V S
Sbjct: 271 DVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT------DVTVGEGASVVRTHGSESE 324
Query: 372 LSYNTGVGEHSKLLNGCLLGTGVLIG------NKTCLSGVKLP 408
+ VG + L G +LG +G N T G K+P
Sbjct: 325 IGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVP 367
>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 32.3 bits (74), Expect = 0.57
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 319 VVIGEGSSIG---------ENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
+G+ S IG E Q + IIG NC IG+N S + + V + D C V
Sbjct: 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGAN-----SEVVEGVIVGDGCVV 209
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase)
catalyzes the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan
and various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 32.2 bits (74), Expect = 0.59
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 32 FPVPEPYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQIRELVKRKEKSL 86
VP+P L+ NK ++E+ +E L +G++EII+ + +K EK L
Sbjct: 19 LTVPKP--LVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKL 71
>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 260
Score = 31.9 bits (73), Expect = 0.74
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
+LP+V+K L++Y +E +GIE+I++ I
Sbjct: 25 MLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 32.1 bits (74), Expect = 0.74
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEII 65
+LP+V+K +++Y +E +GIE+II
Sbjct: 25 MLPIVDKPVIQYIVEEAVAAGIEDII 50
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients.
Length = 145
Score = 31.0 bits (71), Expect = 0.84
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 319 VVIGEGSSIGENTQ---LSHCIIGRNCTIGSNVR 349
+ +G+ S IG+ C+I V+
Sbjct: 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVK 35
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 31.8 bits (73), Expect = 0.89
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 37 PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVN-QIRELVKRK-----------EK 84
P L P+ + LEY LE+L GI IV ++ QI E E
Sbjct: 20 PKPLAPVAGRPFLEYLLEYLARQGISR-IVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEP 78
Query: 85 SLVGT 89
+GT
Sbjct: 79 EPLGT 83
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 31.7 bits (72), Expect = 0.92
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 412 ADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMDDTSLFYTE 471
A+E+ D +D E+ E E D D+ + E DS+ ++ E
Sbjct: 209 AEELGDEPESADSEDNEDEDDPKEDE-DDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Query: 472 VVDS 475
++
Sbjct: 268 AAEA 271
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 31.8 bits (72), Expect = 1.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 16 EVLQAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVN 73
+V +AVI P + P +LPLV+K L++Y + +GI EI++ S N
Sbjct: 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKN 66
Query: 74 QI 75
I
Sbjct: 67 SI 68
>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis
O-acetyl transferase WbbJ; Provisional.
Length = 192
Score = 31.0 bits (70), Expect = 1.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 317 QQVVIGEGSSIGEN-TQLSHCIIGRNCTIGSNVRLEKSY 354
VVIG+ IGEN T L IG C +G+N + KS
Sbjct: 129 SAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSI 167
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 31.2 bits (71), Expect = 1.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 413 DEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQG 458
+E D+ +EEE E+E+DSD DSE + + +G
Sbjct: 37 EEDDEEFEIEEEEE--------EEEVDSDFDDSEDDEPESDDEEEG 74
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose [Regulatory functions, Protein
interactions].
Length = 297
Score = 31.5 bits (71), Expect = 1.2
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 18 LQAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
L+AVI + P + P +LP+V+K +++Y ++ + +GI+EI++ + N +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 31.0 bits (71), Expect = 1.3
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 33 PVPEPYCLLPLVNKCLLEYTLEH-LHLSGIEEIIVFCT----SHVNQIRELVKRKEKSLV 87
PVP+ Y L L + LLE+TLE L I+EI+V + + ++ +L K +V
Sbjct: 21 PVPKQY--LELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVV 78
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 31.5 bits (71), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 412 ADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGT 459
D+ +D ++D DE+E + E + D D+ DS +D + DG T
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNET 101
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 31.4 bits (72), Expect = 1.3
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIV 66
+LP+V+K L++Y +E +GIEEI++
Sbjct: 29 MLPIVDKPLIQYIVEEAVAAGIEEILI 55
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 31.5 bits (71), Expect = 1.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 410 AGADEVDDGNNDSDEEEVPKFKCESEQELDSDESDS--ESENDVDSVD 455
A AD D +D DE+E + + E + DS S S SE++ DS D
Sbjct: 445 AHADRADSDEDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSAD 492
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family.
Members of this protein family include YggS from
Escherichia coli and YBL036C, an uncharacterized
pyridoxal protein of Saccharomyces cerevisiae [Unknown
function, Enzymes of unknown specificity].
Length = 229
Score = 31.0 bits (70), Expect = 1.6
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 128 SNINLLSALKSFKKINSMDSGAVALVLYKKKGQSKSSWKEDLIVAYECDSKKLLMHQTPQ 187
SN + L F ++++DS +A L +++ E L LL
Sbjct: 85 SNKDRLVVEN-FDWVHTIDSLKIAKKLNEQR--------EKLQPPLNV----LLQINISD 131
Query: 188 DNQKKVNIPMENILLYSKLEICAHLASTGIMICSPAVPPLFSDNFDFQTQEHFIKGVLIN 247
+ K P E + L ++E HL G+M + + D +E+F L+
Sbjct: 132 EESKSGIQPEELLELAIQIEELKHLKLRGLM----TIGAPTDSHED--QEENFRFMKLLF 185
Query: 248 EEI 250
+I
Sbjct: 186 WQI 188
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 30.9 bits (71), Expect = 1.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 40 LLPLVNKCLLEYTLEHLHLSG-IEEIIV 66
LPL K +LE+TLE I+EIIV
Sbjct: 25 YLPLGGKPILEHTLEAFLAHPRIDEIIV 52
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 31.0 bits (71), Expect = 2.1
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 255 LY--CSVVDDIEYGIS 268
LY SVVDDI+ GI+
Sbjct: 183 LYTLPSVVDDIDMGIT 198
>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
hexapeptide repeat family. This family of proteins
contains copies of the Bacterial transferase hexapeptide
repeat family (pfam00132) and is only found in operons
encoding the phosphonate C-P lyase system (GenProp0232).
Many C-P lyase operons, however, lack a homolog of this
protein.
Length = 204
Score = 30.5 bits (69), Expect = 2.1
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 327 IGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNCEV 367
+ +L+ +GR IG RL + L D + +C++
Sbjct: 11 LHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDI 51
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.7 bits (70), Expect = 2.5
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 411 GADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDS 453
G D+ D+ ++D D EE + S++E D ++ DS+ E+D +
Sbjct: 329 GVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEE 371
>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities:
1) 3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalyzing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43, catalyzing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized
describing kinetics and regulation by substrate charge,
energetic charge and amino-sugar demand.
Length = 197
Score = 30.0 bits (68), Expect = 2.6
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 40 LLPLVNKCLLEYTLEHLHLSG-IEEIIVFCTSHVNQIRELVK 80
LL L K L+ +E S ++++V S +I ++ +
Sbjct: 18 LLKLGGKPLIARVIEAALQSKLFDKVVVATDSE--EIADIAE 57
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 30.8 bits (69), Expect = 2.7
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 7/111 (6%)
Query: 392 TGVLIGNKTCLSGVKLPSAGADEVDDGNNDSDEEEVPKFKCESEQELDSD------ESDS 445
T V I + L G + S A V G + + + E Q D + + D
Sbjct: 359 TTVRIDDHGFLPGREQTSKKA-AVPKGTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDD 417
Query: 446 ESENDVDSVDGQGTPPMDDTSLFYTEVVDSLLRGYEEKLVCDNLTLEINSS 496
END + V G +DD F + R E + E
Sbjct: 418 PKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDE 468
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 30.7 bits (69), Expect = 2.8
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 411 GADEVDDGNNDSDEEEVPKFKCESEQELDSDE------SDSESENDVDSV---DGQGTPP 461
+E + + +EEE + + E+E + +E +D+ SE +++ DG G P
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499
Query: 462 MDD 464
+D
Sbjct: 500 EED 502
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 30.2 bits (69), Expect = 3.3
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 504 VKEVNFYMVK----------AILVVKNKPDMDMKSFHTHMMSKI-NYFLPLF 544
V+E Y V+ A +V+ + + D+ + H+ ++ Y +PLF
Sbjct: 487 VEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLF 538
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 30.1 bits (68), Expect = 3.5
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 248 EEILDCRLYCSVVDDIEYGISVKDWPSYQIASRDIVQRWVHPFVPSYKYRRNNIYLAEDV 307
EE+L R+ V +E G+ + S +I R ++ + P Y + I A
Sbjct: 240 EELLRARI---VEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRI--ARGA 294
Query: 308 LIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEK-SYLFDNVKIEDNCE 366
+I L+ VV G++I + L +G C++G RL + L + ++ + E
Sbjct: 295 VIHSHCWLRDAVV-SSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVE 353
Query: 367 VRLSVLSYNTGVGEHSKL-----LNGCLLGTGVLIGNKT 400
++ +VL G+ +K L +G G IG T
Sbjct: 354 MKKAVL------GKGAKANHLTYLGDAEIGAGANIGAGT 386
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 30.2 bits (68), Expect = 3.6
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 409 SAGADEVDD--GNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMD 463
G +E +D D DE+E + + E E E + D+ +G P+D
Sbjct: 645 FEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPID 701
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. Alternate name: dTDP-D-glucose synthase
homotetramer This model describes a tightly conserved
but broadly distributed subfamily (here designated as
short form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of
dTDP-L-rhamnose, a cell wall constituent and a feedback
inhibitor of the enzyme [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 286
Score = 30.1 bits (68), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 40 LLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSH 71
LLP+ +K ++ Y L L L+GI +I++ T
Sbjct: 24 LLPIYDKPMIYYPLSTLMLAGIRDILIISTPQ 55
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 164
Score = 29.2 bits (66), Expect = 3.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 320 VIGEGSSIGENTQLSH-CIIGRNCTIGSNVRLE 351
V S +G+N ++ CIIG C + S+ L
Sbjct: 91 VFESKSFVGKNVIITDGCIIGAGCKLPSSEILP 123
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 28.6 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 416 DDGNNDSDEEEVPKFKCESEQELDSDESDSESENDV 451
+D ++DSDEEE + E E D DE D E +++V
Sbjct: 10 EDSDSDSDEEE----DDDDEDEEDDDEDDDEDDDEV 41
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved
in choline phosphorylation for cell surface LPS
epitopes [Cell envelope biogenesis, outer membrane].
Length = 231
Score = 29.7 bits (67), Expect = 4.0
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 18 LQAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
+ A+I+ F P+ + P LL + + L+E +E L +GI++I + Q
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF 60
Query: 76 RELVKRKEKSLV 87
L + + +LV
Sbjct: 61 EYLKDKYDVTLV 72
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 29.9 bits (67), Expect = 4.1
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 18 LQAVIVTDTFNRNFFPVPE--PYCLLPLVNKCLLEYTLEHLHLSGIEEIIVFCTSHVNQI 75
L+AVI + P + P +LP+V+K +++Y ++ + +GI+EI++ + N +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in
the synthesis of the spore coat. Spore coat
polysaccharide biosynthesis protein F (spsF) is a
glycosyltransferase implicated in the synthesis of the
spore coat in a variety of bacteria challenged by
stress as starvation. The spsF gene is expressed in the
late stage of coat development responsible for a
terminal step in coat formation that involves the
glycosylation of the coat. SpsF gene mutation resulted
in spores that appeared normal. But, the spores tended
to aggregate and had abnormal adsorption properties,
indicating a surface alteration.
Length = 233
Score = 29.5 bits (67), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 39 CLLPLVNKCLLEYTLEHL-HLSGIEEIIVFCTS 70
L PL K LLE+ L+ L I+EI++ TS
Sbjct: 17 VLKPLGGKPLLEHLLDRLKRSKLIDEIVI-ATS 48
>gnl|CDD|238560 cd01140, FatB, Siderophore binding protein FatB. These proteins
have been shown to function as ABC-type initial
receptors in the siderophore-mediated iron uptake in
some eubacterial species. They belong to the TroA
superfamily of periplasmic metal binding proteins that
share a distinct fold and ligand binding mechanism. A
typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind
their ligands in the cleft between these domains.
Length = 270
Score = 29.5 bits (67), Expect = 5.1
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 72 VNQIRELVKRKEKSLVGTLITLIVSDGCYS-------FGDVMRDLDGKAVIRNDFILVSG 124
+ + + K K+K+LV ++V+ G S FG + L + N G
Sbjct: 137 IAEAKSAAKGKKKALV-----VLVNGGKLSAFGPGSRFGWLHDLLGFEPADENIKASSHG 191
Query: 125 DVVSN 129
VS
Sbjct: 192 QPVSF 196
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 29.3 bits (66), Expect = 5.8
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 408 PSAGADEVDDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVD 455
S D ++G+ D DEE+ K K E +SD DS+S +D DS D
Sbjct: 85 KSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSD 132
Score = 29.3 bits (66), Expect = 5.9
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 397 GNKTCLSGVKLPSAGADEVDDGNNDSDEEEVPKFKCESE-QELDSDESDSESENDVDSVD 455
NK + + + +D +E+E+ + + E + + D+D+SDS S++D D
Sbjct: 75 ENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDD 134
Query: 456 GQGTPPMDDT 465
D+T
Sbjct: 135 SDDDDSEDET 144
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.5 bits (66), Expect = 6.4
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 408 PSAGADEVDDGNNDSDEEEVPKFKCESEQ------------ELDSDESDSESENDVDSVD 455
P+ E D+ + +S+EE+ + S++ LD D+SDS ++D +D
Sbjct: 309 PAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDID 368
Query: 456 G 456
G
Sbjct: 369 G 369
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
Length = 122
Score = 27.8 bits (63), Expect = 6.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 4 KKGKAKSEIQKDEVLQAVIV 23
KK K +++K +V++AVIV
Sbjct: 44 KKAIPKGKVKKGDVVKAVIV 63
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 28.6 bits (64), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 320 VIGEGSSIGENTQLSHCIIGRNCTIGSN 347
++GE IG L C+IGR+ +G N
Sbjct: 73 IVGENGHIGHGAILHGCVIGRDALVGMN 100
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.1 bits (65), Expect = 8.3
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 398 NKTCLSGVKLPSAGADEVDDGNNDSDEEEVPKFKCESEQELDSDESD--SESENDVDSVD 455
+ +S V+ S +E+ + E V + + E E E++ ++SD S +
Sbjct: 42 SSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESI 101
Query: 456 GQGTPPMDDTSL---FYTEVVDSLLRGYEEKLVCDNLTLEINSSRYAYNVTVK---EVNF 509
+DD SL E + R EE L +N + + + Y VK ++
Sbjct: 102 STDMDGIDDDSLDRKLKLERENLRKREIEE-LAEENFS--RGNKLFVYPQVVKPDSDIEV 158
Query: 510 YMVKAILVVKNKPD-MDMKSF 529
Y+ +++ + N+PD + M +F
Sbjct: 159 YLNRSLSTLANEPDVLIMGAF 179
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 29.2 bits (66), Expect = 8.4
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 416 DDGNNDSDEEEVPKFKCESEQELDSDESDSESENDVDSVDGQGTPPMDDTS 466
DDG+ + + ++ P++ + D+ D ES+ + + DD
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDD 152
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 28.8 bits (65), Expect = 8.5
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 306 DVLIGKTSVLKQQVVIGEGSSIGENTQLSHCIIGRNCTIGSNVRLEKSYLFDNVKIEDNC 365
DV I +++ V +G IG L +C+IG +C I Y +V +ED
Sbjct: 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEI-------SPY---SV-VED-- 317
Query: 366 EVRLSVLSYNTGVGEHSKLLNGCLLGTGVLIGN 398
+ L +G ++L G L G +GN
Sbjct: 318 ----ANLGAACTIGPFARLRPGAELAEGAHVGN 346
>gnl|CDD|214472 smart00017, OSTEO, Osteopontin. Osteopontin is an acidic
phosphorylated glycoprotein of about 40 Kd which is
abundant in the mineral matrix of bones and which binds
tightly to hydroxyapatite. It is suggested that
osteopontin might function as a cell attachment factor
and could play a key role in the adhesion of osteoclasts
to the mineral matrix of bone.
Length = 287
Score = 28.8 bits (64), Expect = 9.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 413 DEVDDGNNDSDEEEVPKFKCESEQELDSDESD 444
D VDD +NDSD+ E ES++ SDESD
Sbjct: 79 DHVDDRDNDSDDAEDSDDSDESDESHHSDESD 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,505,186
Number of extensions: 3101818
Number of successful extensions: 3528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3124
Number of HSP's successfully gapped: 212
Length of query: 627
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 524
Effective length of database: 6,369,140
Effective search space: 3337429360
Effective search space used: 3337429360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.6 bits)